AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611520 MtrunA17_Chr4g0044921 96.524 633 16 4 1 633 1 627 0.0 1260
Msa0611520 MtrunA17_Chr3g0133911 66.007 606 172 8 47 631 45 637 0.0 817
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611520 AT3G19240.1 69.242 660 161 9 1 631 1 647 0.0 884
Msa0611520 AT4G33400.1 65.552 598 188 7 43 631 57 645 0.0 806

Find 192 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTACTCTTTCTTTAATT+TGG 0.094754 4_2:+59744813 None:intergenic
CTTTAATTTGGAAATTAAAA+AGG 0.197496 4_2:+59744825 None:intergenic
GAAACCTTCAAATGGAAAAT+AGG 0.222418 4_2:+59745023 None:intergenic
ATTTCGTCTCCAACGGTGTC+TGG 0.228016 4_2:-59747965 Msa0611520:CDS
GCAACACTCCCAACGCTAAA+TGG 0.243481 4_2:-59748166 Msa0611520:CDS
GAGAATAAGGTTAAGGTTTA+CGG 0.259733 4_2:-59747846 Msa0611520:CDS
ATTGATTGATTATAGTATAT+TGG 0.263442 4_2:+59748537 None:intergenic
GGGTACAACTGATACTTATT+TGG 0.269243 4_2:-59747013 Msa0611520:CDS
GAAATTCAGTGACGAATTTC+CGG 0.280068 4_2:+59747913 None:intergenic
TGCACGTTTGAGAATGTTTA+CGG 0.298124 4_2:-59747885 Msa0611520:CDS
CACTCCTCTGGATTCACATT+TGG 0.308842 4_2:-59746890 Msa0611520:CDS
TTGATTGATTATAGTATATT+GGG 0.312159 4_2:+59748538 None:intergenic
GAATTCCCCGGTCAAAATTC+CGG 0.312404 4_2:+59747604 None:intergenic
TAGTATATTGGGATTTGAAA+TGG 0.322398 4_2:+59748549 None:intergenic
GCTACCACCAACGGAGCTTC+AGG 0.325629 4_2:+59745119 None:intergenic
TTTGGTTATTACACAAGTTT+GGG 0.327977 4_2:-59744870 Msa0611520:three_prime_UTR
TTAGTTTGTGCAGAAAATTT+AGG 0.331071 4_2:-59744955 Msa0611520:three_prime_UTR
ATGGCCACCATGAAACTTAT+TGG 0.332207 4_2:+59746858 None:intergenic
CCGGCAGGAGACGCCGAATA+AGG 0.333099 4_2:-59747544 Msa0611520:CDS
TTTCAATGCTTTGCAACAAC+TGG 0.335245 4_2:-59747180 Msa0611520:CDS
TTTGAAAATTGAAATTGAAT+TGG 0.336947 4_2:+59748509 None:intergenic
TATCAAGAGCACCTAGGGTT+AGG 0.337247 4_2:+59747664 None:intergenic
ATAAGGCTCCGGACTCTTCC+CGG 0.347959 4_2:+59747746 None:intergenic
ACGGAATCATCCGCGGCTTC+CGG 0.354674 4_2:+59747798 None:intergenic
GAACTTCAATTAAAGATGTT+TGG 0.356166 4_2:-59748005 Msa0611520:CDS
ATCACCGACGGAAGAGAATA+AGG 0.356376 4_2:-59747859 Msa0611520:CDS
CCCTGGTTCCAATGCAAAAC+TGG 0.356444 4_2:+59747228 None:intergenic
GGAAGAGTCCGGAGCCTTAT+CGG 0.358877 4_2:-59747743 Msa0611520:CDS
GGGAAGACAAAGACTGGTTT+TGG 0.360962 4_2:-59746958 Msa0611520:CDS
GTAACATCAACGCTTGTAAT+CGG 0.364613 4_2:+59747057 None:intergenic
AACCAGCTTGATATAGAAAC+AGG 0.367263 4_2:-59747444 Msa0611520:CDS
CTCATCAACAAAGCCTTATT+CGG 0.367438 4_2:+59747531 None:intergenic
ACAGTGCTCATGAATGTTAC+AGG 0.367543 4_2:-59745247 Msa0611520:CDS
GGTTTCAAATTTCTAGTGTT+AGG 0.372480 4_2:-59745006 Msa0611520:three_prime_UTR
CTGATAGAGCTAACTTTCAT+AGG 0.376837 4_2:+59745092 None:intergenic
ATTGGGATTTGAAATGGAAA+TGG 0.377326 4_2:+59748555 None:intergenic
TGGGCAAGTTCAGTGTGATA+TGG 0.385495 4_2:-59745289 Msa0611520:CDS
AATATAAACGGAGGTTTAAC+GGG 0.388303 4_2:+59745052 None:intergenic
TTGAAAATTGAAATTGAATT+GGG 0.390788 4_2:+59748510 None:intergenic
GTTAGCTCTATCAGTATGTC+TGG 0.398499 4_2:-59745083 Msa0611520:CDS
TTGGTGGTCGTATGGGAAAC+AGG 0.400307 4_2:-59746939 Msa0611520:CDS
ATTGTTGAAGCTCACTCCTC+TGG 0.400548 4_2:-59746902 Msa0611520:CDS
GAGTGGAAGTTTGAGAAAGA+TGG 0.406716 4_2:-59747408 Msa0611520:CDS
GGCGTAGGAGGTTCGTTTGT+CGG 0.407065 4_2:+59748136 None:intergenic
GTTTACGGTAAGGAGTTTAT+CGG 0.411185 4_2:-59747831 Msa0611520:CDS
TAACATCAACGCTTGTAATC+GGG 0.416479 4_2:+59747058 None:intergenic
AATGGAAATGGATCAGTTAA+CGG 0.417671 4_2:+59748567 None:intergenic
GTCTTTCAGGTCACTGAGAA+TGG 0.421407 4_2:-59745341 Msa0611520:intron
AAATATAAACGGAGGTTTAA+CGG 0.422537 4_2:+59745051 None:intergenic
CAAAGAACAGAGAGCGTGTC+AGG 0.426443 4_2:-59748625 Msa0611520:five_prime_UTR
CGGTAAGGAGTTTATCGGTT+GGG 0.430501 4_2:-59747826 Msa0611520:CDS
ATCAAGAGCACCTAGGGTTA+GGG 0.431483 4_2:+59747665 None:intergenic
TCGGTCTAGAGGTGATTTGA+TGG 0.434873 4_2:-59747724 Msa0611520:CDS
AAACATCTTTAATTGAAGTT+CGG 0.437252 4_2:+59748007 None:intergenic
AGGATCCAATTGTGACCCTT+TGG 0.437994 4_2:+59747350 None:intergenic
AGAAATTTGAAACCTTCAAA+TGG 0.441794 4_2:+59745015 None:intergenic
AAGCCGCGGATGATTCCGTT+TGG 0.443303 4_2:-59747794 Msa0611520:CDS
TGATACCAAAGGGTCACAAT+TGG 0.445124 4_2:-59747355 Msa0611520:CDS
ATGTGGCGCTCCACTATTCA+AGG 0.446889 4_2:+59747479 None:intergenic
CGAGGTTGGTGGAATGTGAT+TGG 0.450494 4_2:+59748315 None:intergenic
GAGAGAATCCATTTAGCGTT+GGG 0.450845 4_2:+59748158 None:intergenic
GTCGTAATCTGAGTCGGAAT+CGG 0.451640 4_2:+59748403 None:intergenic
CCTCTGGATTCACATTTGGC+TGG 0.454255 4_2:-59746886 Msa0611520:CDS
AGGGTCACAATTGGATCCTT+CGG 0.454835 4_2:-59747346 Msa0611520:CDS
AGCCGCGGATGATTCCGTTT+GGG 0.459582 4_2:-59747793 Msa0611520:CDS
ATGATAATAGGCTATGTCAA+TGG 0.461578 4_2:-59747302 Msa0611520:CDS
TTTCGTCTCCAACGGTGTCT+GGG 0.461909 4_2:-59747964 Msa0611520:CDS
GGAACTACCAATAAGTTTCA+TGG 0.465212 4_2:-59746865 Msa0611520:CDS
TTCATGGTGGCCATTTCTCA+TGG 0.466170 4_2:-59746849 Msa0611520:CDS
ATCGATGAGGATGGCGAAGA+CGG 0.468077 4_2:-59747100 Msa0611520:CDS
GGATGGCTCCGGGAAGAGTC+CGG 0.468191 4_2:-59747754 Msa0611520:CDS
AATATGAAGGTGGGAATCTC+CGG 0.468508 4_2:-59747563 Msa0611520:CDS
GACGGAAGAGAATAAGGTTA+AGG 0.470623 4_2:-59747853 Msa0611520:CDS
AATAGGAAAGAAAATATAAA+CGG 0.474520 4_2:+59745040 None:intergenic
CATCTTTAATTGAAGTTCGG+TGG 0.474570 4_2:+59748010 None:intergenic
GCAGTTTCCGAGGATGGCTC+CGG 0.476882 4_2:-59747765 Msa0611520:CDS
GGAAAATTCACGGCCTTCGC+GGG 0.477147 4_2:+59748424 None:intergenic
CGGAAAATTCACGGCCTTCG+CGG 0.477783 4_2:+59748423 None:intergenic
TAAGGTTAAGGTTTACGGTA+AGG 0.479211 4_2:-59747841 Msa0611520:CDS
TTTGATGGAAAGTGGGTGTT+GGG 0.481016 4_2:-59747033 Msa0611520:CDS
CTGTTACAAGATAGTATTGA+AGG 0.484212 4_2:-59745198 Msa0611520:CDS
CGATTTCGATTTCATCTCAT+GGG 0.484404 4_2:-59748458 Msa0611520:exon
TCCCTGTTTCTATATCAAGC+TGG 0.490609 4_2:+59747442 None:intergenic
CTCCCCTGAAGCTCCGTTGG+TGG 0.492757 4_2:-59745123 Msa0611520:CDS
TCGATTTCGATTTCATCTCA+TGG 0.494382 4_2:-59748459 Msa0611520:exon
CGACTCCCCTGAAGCTCCGT+TGG 0.497070 4_2:-59745126 Msa0611520:CDS
TGATAATAGGCTATGTCAAT+GGG 0.497189 4_2:-59747301 Msa0611520:CDS
ACGATGTTGCTCAAGGTCAA+TGG 0.498510 4_2:-59748070 Msa0611520:CDS
AGTGGAAGTTTGAGAAAGAT+GGG 0.500651 4_2:-59747407 Msa0611520:CDS
GATTGATTACCCATGAGAAA+TGG 0.502077 4_2:+59746839 None:intergenic
CCTTATTCGGCGTCTCCTGC+CGG 0.502524 4_2:+59747544 None:intergenic
ACTCTTCCCGGAGCCATCCT+CGG 0.504972 4_2:+59747758 None:intergenic
CTCTTGAAAATTGATGCCCC+TGG 0.506880 4_2:+59747211 None:intergenic
ACATTGTTTACTGATAAAGA+TGG 0.508772 4_2:-59746979 Msa0611520:CDS
TGGGATATGCGTGATAGAAA+AGG 0.509675 4_2:-59747282 Msa0611520:CDS
TGCTTTGCAACAACTGGAGA+TGG 0.514356 4_2:-59747174 Msa0611520:CDS
GTAATCGGGGAACCAAGCCC+AGG 0.519099 4_2:+59747072 None:intergenic
GTTTATCGGTTGGGTTAAGC+CGG 0.522207 4_2:-59747817 Msa0611520:CDS
CGAATAAGGCTTTGTTGATG+AGG 0.523505 4_2:-59747530 Msa0611520:CDS
GGGCAAGTTCAGTGTGATAT+GGG 0.523866 4_2:-59745288 Msa0611520:CDS
CTACCACCAACGGAGCTTCA+GGG 0.527377 4_2:+59745120 None:intergenic
CTGATGAGTCCCTTGAATAG+TGG 0.528395 4_2:-59747489 Msa0611520:CDS
GGAGAGAATCCATTTAGCGT+TGG 0.530109 4_2:+59748157 None:intergenic
ATGGGGCTGATATTACTATG+AGG 0.530532 4_2:-59747389 Msa0611520:CDS
GGAGTGAGCTTCAACAATCT+AGG 0.532631 4_2:+59746907 None:intergenic
AAATCACCTCTAGACCGATA+AGG 0.534172 4_2:+59747729 None:intergenic
ACGGTAAGGAGTTTATCGGT+TGG 0.534675 4_2:-59747827 Msa0611520:CDS
GAATTTCCGGTAGGATTCAT+CGG 0.534793 4_2:+59747926 None:intergenic
TTTGACCGGGGAATTCGAAA+GGG 0.535186 4_2:-59747597 Msa0611520:CDS
GTCGACATCATCGAGGTTGG+TGG 0.536613 4_2:+59748304 None:intergenic
TTCCGGTAGGATTCATCGGT+GGG 0.539088 4_2:+59747930 None:intergenic
AAAGATGGGAAGACAAAGAC+TGG 0.541574 4_2:-59746964 Msa0611520:CDS
GAGTTTGAAGAGGCTGCAAA+TGG 0.542974 4_2:-59747699 Msa0611520:CDS
CGCCACCTTGTTGCGACTGT+GGG 0.543451 4_2:-59745308 Msa0611520:CDS
CAGTTTCCGAGGATGGCTCC+GGG 0.544085 4_2:-59747764 Msa0611520:CDS
GAGGTTGGTGGAATGTGATT+GGG 0.544190 4_2:+59748316 None:intergenic
ACTGTTATCAAGAGCACCTA+GGG 0.545077 4_2:+59747659 None:intergenic
GAAGATGCAGTTTCCGAGGA+TGG 0.549847 4_2:-59747771 Msa0611520:CDS
GGAGATGGTTCAATTGTGGT+GGG 0.552428 4_2:-59747159 Msa0611520:CDS
CGTGTTGATTTCGTCTCCAA+CGG 0.558067 4_2:-59747972 Msa0611520:CDS
TGGAGATGGTTCAATTGTGG+TGG 0.559045 4_2:-59747160 Msa0611520:CDS
ACGCCACCTTGTTGCGACTG+TGG 0.560977 4_2:-59745309 Msa0611520:CDS
CATTGTTTACTGATAAAGAT+GGG 0.561253 4_2:-59746978 Msa0611520:CDS
AGTCGGAATCGGAAAATTCA+CGG 0.562438 4_2:+59748414 None:intergenic
TCATGGTGGCCATTTCTCAT+GGG 0.562447 4_2:-59746848 Msa0611520:intron
GGAAACTGCATCTTCCCAAA+CGG 0.564677 4_2:+59747779 None:intergenic
AGACGAAATCAACACGGCGT+TGG 0.564708 4_2:+59747979 None:intergenic
GGTCGTATGGGAAACAGGAT+AGG 0.565383 4_2:-59746934 Msa0611520:CDS
AGCGTCGACATCATCGAGGT+TGG 0.570308 4_2:+59748301 None:intergenic
CCTCTAGACCGATAAGGCTC+CGG 0.574522 4_2:+59747735 None:intergenic
ATAGGAGTTGCTACCACCAA+CGG 0.574538 4_2:+59745110 None:intergenic
TTCCCACCGATGAATCCTAC+CGG 0.575350 4_2:-59747932 Msa0611520:CDS
TTGGGTTAAGCCGGAAGCCG+CGG 0.576118 4_2:-59747808 Msa0611520:CDS
TTTAAGAGCCCAGACACCGT+TGG 0.580496 4_2:+59747956 None:intergenic
AGCTGCATTGCCATGGCAGA+TGG 0.582717 4_2:-59744723 Msa0611520:three_prime_UTR
GGGGTTGCTGTGAAATATGA+AGG 0.584027 4_2:-59747576 Msa0611520:CDS
ATATCACAAATGATACCAAA+GGG 0.586841 4_2:-59747365 Msa0611520:CDS
TTGCTGTGAAATATGAAGGT+GGG 0.587942 4_2:-59747572 Msa0611520:CDS
GGTATTCAAACCCTAACCCT+AGG 0.591767 4_2:-59747675 Msa0611520:CDS
GAATAAGGCTTTGTTGATGA+GGG 0.593377 4_2:-59747529 Msa0611520:CDS
GATATCACAAATGATACCAA+AGG 0.593545 4_2:-59747366 Msa0611520:CDS
TTGGGAAGATGCAGTTTCCG+AGG 0.594533 4_2:-59747775 Msa0611520:CDS
TACCACCAACGGAGCTTCAG+GGG 0.595085 4_2:+59745121 None:intergenic
TTGTTCGTCGTAATCTGAGT+CGG 0.595936 4_2:+59748397 None:intergenic
AACATCAACGCTTGTAATCG+GGG 0.597890 4_2:+59747059 None:intergenic
TGGGGCTGATATTACTATGA+GGG 0.598346 4_2:-59747388 Msa0611520:CDS
TTGACCGGGGAATTCGAAAG+GGG 0.605039 4_2:-59747596 Msa0611520:CDS
TGAAGGTGGGAATCTCCGGC+AGG 0.605060 4_2:-59747559 Msa0611520:CDS
GGTACTTCTCAGTCCCGCGA+AGG 0.608390 4_2:-59748437 Msa0611520:CDS
TTAACCTTATTCTCTTCCGT+CGG 0.609586 4_2:+59747855 None:intergenic
CACAACAACGATGTTGCTCA+AGG 0.611006 4_2:-59748077 Msa0611520:CDS
TTTGAAGAGGCTGCAAATGG+TGG 0.611463 4_2:-59747696 Msa0611520:CDS
CCGGAGCCTTATCGGTCTAG+AGG 0.612763 4_2:-59747735 Msa0611520:CDS
TGGTTCAGCTTCGAAGCATG+TGG 0.615986 4_2:+59747462 None:intergenic
GGGATGAAGATTGAACGTCT+TGG 0.616486 4_2:+59748336 None:intergenic
AATAATTCAACCATCTGCCA+TGG 0.618549 4_2:+59744713 None:intergenic
TTTCCGGTAGGATTCATCGG+TGG 0.620316 4_2:+59747929 None:intergenic
CAGGGAAGATTGTTTCAGAG+TGG 0.620928 4_2:-59747425 Msa0611520:CDS
TAAAGAAGAAAACAGAAAAG+CGG 0.621840 4_2:+59744768 None:intergenic
TTCGAATAAATCGATGAGGA+TGG 0.623115 4_2:-59747109 Msa0611520:CDS
AACTGTTATCAAGAGCACCT+AGG 0.624516 4_2:+59747658 None:intergenic
GAGTGTTGCCGCCGATGTGA+AGG 0.626265 4_2:+59748180 None:intergenic
AGGAAAGAAAATATAAACGG+AGG 0.627026 4_2:+59745043 None:intergenic
AAGCTTTACCTTCACATCGG+CGG 0.627540 4_2:-59748188 Msa0611520:CDS
GTTGCTGTGAAATATGAAGG+TGG 0.629707 4_2:-59747573 Msa0611520:CDS
AACAGAAAAGCGGTTAAATG+CGG 0.630057 4_2:+59744778 None:intergenic
GTTTGGGTTTGCAAAGACTG+AGG 0.633350 4_2:-59744854 Msa0611520:three_prime_UTR
ACTTGCCCACAGTCGCAACA+AGG 0.634313 4_2:+59745303 None:intergenic
TGACCGGGGAATTCGAAAGG+GGG 0.636755 4_2:-59747595 Msa0611520:CDS
GGTCAATGGATTCTCAAAGT+CGG 0.637822 4_2:-59748056 Msa0611520:CDS
GAGATGGTTCAATTGTGGTG+GGG 0.643174 4_2:-59747158 Msa0611520:CDS
TTTGATGGAGGAGTTTGAAG+AGG 0.645411 4_2:-59747709 Msa0611520:CDS
TGTGGCGCTCCACTATTCAA+GGG 0.647458 4_2:+59747480 None:intergenic
TTCAGTGACGAATTTCCGGT+AGG 0.648527 4_2:+59747917 None:intergenic
ACGAGTCAATCATAGAATCA+CGG 0.650778 4_2:-59745175 Msa0611520:CDS
TTAGAAATAAAAGAGATACA+TGG 0.658330 4_2:+59744929 None:intergenic
AACTGGAGATGGTTCAATTG+TGG 0.661094 4_2:-59747163 Msa0611520:CDS
GTCTAGAGGTGATTTGATGG+AGG 0.661438 4_2:-59747721 Msa0611520:CDS
TTCCCAAACGGAATCATCCG+CGG 0.661974 4_2:+59747791 None:intergenic
TGTTTACGGTTTATCACCGA+CGG 0.671523 4_2:-59747871 Msa0611520:CDS
GAATGTTACAGGAATCAACA+AGG 0.677359 4_2:-59745236 Msa0611520:CDS
ACCAGCTTGATATAGAAACA+GGG 0.678641 4_2:-59747443 Msa0611520:CDS
GTCAAGCTTTACCTTCACAT+CGG 0.680830 4_2:-59748191 Msa0611520:CDS
TGTATTCGAATAAATCGATG+AGG 0.688375 4_2:-59747113 Msa0611520:CDS
GTGGAAGTTTGAGAAAGATG+GGG 0.691794 4_2:-59747406 Msa0611520:CDS
CCAGCCAAATGTGAATCCAG+AGG 0.694133 4_2:+59746886 None:intergenic
AATGTTACAGGAATCAACAA+GGG 0.703235 4_2:-59745235 Msa0611520:CDS
TGCCCACAGTCGCAACAAGG+TGG 0.708774 4_2:+59745306 None:intergenic
CGTTGGAGACGAAATCAACA+CGG 0.722626 4_2:+59747973 None:intergenic
GTTCGGTGGAAACCCTAGCG+CGG 0.733834 4_2:+59748024 None:intergenic
ACTACCAATAAGTTTCATGG+TGG 0.735152 4_2:-59746862 Msa0611520:CDS
GTTTAGCGTCGACATCATCG+AGG 0.758315 4_2:+59748297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTGATTATAGTATATT+GGG + chr4_2:59744817-59744836 None:intergenic 15.0%
!! ATTGATTGATTATAGTATAT+TGG + chr4_2:59744818-59744837 None:intergenic 15.0%
!! TTGAAAATTGAAATTGAATT+GGG + chr4_2:59744845-59744864 None:intergenic 15.0%
!! TTTGAAAATTGAAATTGAAT+TGG + chr4_2:59744846-59744865 None:intergenic 15.0%
!! ATATACAAATGAATATGAAT+GGG - chr4_2:59746611-59746630 Msa0611520:intron 15.0%
!!! ACAATGTTTTTGAATTAAAT+AGG - chr4_2:59747014-59747033 Msa0611520:CDS 15.0%
!! AATAGGAAAGAAAATATAAA+CGG + chr4_2:59748315-59748334 None:intergenic 15.0%
!!! CTTTAATTTGGAAATTAAAA+AGG + chr4_2:59748530-59748549 None:intergenic 15.0%
!! AAACATCTTTAATTGAAGTT+CGG + chr4_2:59745348-59745367 None:intergenic 20.0%
!! CATATACAAATGAATATGAA+TGG - chr4_2:59746610-59746629 Msa0611520:intron 20.0%
!! AGATAATGTTATCAGTAAAT+TGG - chr4_2:59747682-59747701 Msa0611520:CDS 20.0%
!! GATAATGTTATCAGTAAATT+GGG - chr4_2:59747683-59747702 Msa0611520:CDS 20.0%
!! TTAGAAATAAAAGAGATACA+TGG + chr4_2:59748426-59748445 None:intergenic 20.0%
!!! TTATTTTGTGATTACAAGTT+TGG - chr4_2:59748452-59748471 Msa0611520:exon 20.0%
!!! TATTTTGTGATTACAAGTTT+GGG - chr4_2:59748453-59748472 Msa0611520:exon 20.0%
!! AAACTACTCTTTCTTTAATT+TGG + chr4_2:59748542-59748561 None:intergenic 20.0%
! TAGTATATTGGGATTTGAAA+TGG + chr4_2:59744806-59744825 None:intergenic 25.0%
!!! AGAAGAGTATTTGAGTTTTA+AGG + chr4_2:59745087-59745106 None:intergenic 25.0%
! GAACTTCAATTAAAGATGTT+TGG - chr4_2:59745347-59745366 Msa0611520:intron 25.0%
! ATATCACAAATGATACCAAA+GGG - chr4_2:59745987-59746006 Msa0611520:intron 25.0%
! ACATTGTTTACTGATAAAGA+TGG - chr4_2:59746373-59746392 Msa0611520:intron 25.0%
! CATTGTTTACTGATAAAGAT+GGG - chr4_2:59746374-59746393 Msa0611520:intron 25.0%
!! TATTTAATGTTGACTATGGT+GGG + chr4_2:59746714-59746733 None:intergenic 25.0%
!! TTATTTAATGTTGACTATGG+TGG + chr4_2:59746715-59746734 None:intergenic 25.0%
!! AGGTTATTTAATGTTGACTA+TGG + chr4_2:59746718-59746737 None:intergenic 25.0%
!! TTACCTTTTCAACAGTAAAA+GGG + chr4_2:59746748-59746767 None:intergenic 25.0%
! TCAAAAACATTGTCAAATGA+CGG + chr4_2:59747007-59747026 None:intergenic 25.0%
! TGAATTAAATAGGATATCAC+AGG - chr4_2:59747024-59747043 Msa0611520:CDS 25.0%
!!! TTTTTAGTGGTAAACATTGA+TGG + chr4_2:59747144-59747163 None:intergenic 25.0%
! TTACAAAAGAAAACCTAGAA+TGG + chr4_2:59747169-59747188 None:intergenic 25.0%
!! TTCTAGGTTTTCTTTTGTAA+AGG - chr4_2:59747169-59747188 Msa0611520:CDS 25.0%
!! TCTAGGTTTTCTTTTGTAAA+GGG - chr4_2:59747170-59747189 Msa0611520:CDS 25.0%
!!! ATTAATTCTCTTGCTGTTAT+AGG - chr4_2:59747196-59747215 Msa0611520:CDS 25.0%
!! ACTTTCTGTTACTTATGTTT+GGG - chr4_2:59747319-59747338 Msa0611520:CDS 25.0%
! GTTAAGAAATCAAGTTATCA+TGG - chr4_2:59747594-59747613 Msa0611520:CDS 25.0%
!! AATTTCACTTAATGAGTTGA+TGG + chr4_2:59747626-59747645 None:intergenic 25.0%
! GGAATGTTAATTTAAACTGA+TGG - chr4_2:59747922-59747941 Msa0611520:CDS 25.0%
! AAATATAAACGGAGGTTTAA+CGG + chr4_2:59748304-59748323 None:intergenic 25.0%
!! AGAAATTTGAAACCTTCAAA+TGG + chr4_2:59748340-59748359 None:intergenic 25.0%
!!! TTAGTTTGTGCAGAAAATTT+AGG - chr4_2:59748397-59748416 Msa0611520:CDS 25.0%
!!! ATCTCTTTTATTTCTAACAC+TGG - chr4_2:59748429-59748448 Msa0611520:CDS 25.0%
!!! TTTTGGTTATTACACAAGTT+TGG - chr4_2:59748481-59748500 Msa0611520:five_prime_UTR 25.0%
! TTTGGTTATTACACAAGTTT+GGG - chr4_2:59748482-59748501 Msa0611520:five_prime_UTR 25.0%
! TAAAGAAGAAAACAGAAAAG+CGG + chr4_2:59748587-59748606 None:intergenic 25.0%
AATGGAAATGGATCAGTTAA+CGG + chr4_2:59744788-59744807 None:intergenic 30.0%
! ATTGGGATTTGAAATGGAAA+TGG + chr4_2:59744800-59744819 None:intergenic 30.0%
GAGAATAAGGTTAAGGTTTA+CGG - chr4_2:59745506-59745525 Msa0611520:intron 30.0%
!!! AGTTTTTTACTCAATGATGC+TGG - chr4_2:59745713-59745732 Msa0611520:intron 30.0%
GATATCACAAATGATACCAA+AGG - chr4_2:59745986-59746005 Msa0611520:intron 30.0%
!!! TTTTAGGGTTGGATGATAAT+AGG - chr4_2:59746038-59746057 Msa0611520:intron 30.0%
ATGATAATAGGCTATGTCAA+TGG - chr4_2:59746050-59746069 Msa0611520:intron 30.0%
TGATAATAGGCTATGTCAAT+GGG - chr4_2:59746051-59746070 Msa0611520:intron 30.0%
TGTATTCGAATAAATCGATG+AGG - chr4_2:59746239-59746258 Msa0611520:intron 30.0%
!!! ATGTTACTTTTGATGGAAAG+TGG - chr4_2:59746311-59746330 Msa0611520:intron 30.0%
!!! TGTTACTTTTGATGGAAAGT+GGG - chr4_2:59746312-59746331 Msa0611520:intron 30.0%
ATCACTCTTCTCTATTATTG+TGG - chr4_2:59746533-59746552 Msa0611520:intron 30.0%
ATATGTCAATGCGAAATAGA+AGG + chr4_2:59746564-59746583 None:intergenic 30.0%
! TACCTTTTCAACAGTAAAAG+GGG + chr4_2:59746747-59746766 None:intergenic 30.0%
! CTTACCTTTTCAACAGTAAA+AGG + chr4_2:59746749-59746768 None:intergenic 30.0%
TACTGTTGAAAAGGTAAGTA+TGG - chr4_2:59746751-59746770 Msa0611520:intron 30.0%
TGTCATTAACGAAGGAAATA+AGG + chr4_2:59746854-59746873 None:intergenic 30.0%
AAAAGTTCTGTCATTAACGA+AGG + chr4_2:59746862-59746881 None:intergenic 30.0%
ACCACTAAAAATTCCATTCT+AGG - chr4_2:59747153-59747172 Msa0611520:CDS 30.0%
!! ACCTAGAATGGAATTTTTAG+TGG + chr4_2:59747157-59747176 None:intergenic 30.0%
! CTAGGTTTTCTTTTGTAAAG+GGG - chr4_2:59747171-59747190 Msa0611520:CDS 30.0%
TGTCTGATTTAGCAATAGTA+GGG - chr4_2:59747274-59747293 Msa0611520:CDS 30.0%
! CACTTTCTGTTACTTATGTT+TGG - chr4_2:59747318-59747337 Msa0611520:CDS 30.0%
TTCACAATCGCACTATTATA+TGG + chr4_2:59747395-59747414 None:intergenic 30.0%
AATGCAGCAAGATGTATAAA+TGG - chr4_2:59747434-59747453 Msa0611520:CDS 30.0%
TGGGTGAGATTTAATGATAA+TGG - chr4_2:59747473-59747492 Msa0611520:CDS 30.0%
GGGTGAGATTTAATGATAAT+GGG - chr4_2:59747474-59747493 Msa0611520:CDS 30.0%
AAAGGATGAAAAACAAGTAC+AGG - chr4_2:59747533-59747552 Msa0611520:CDS 30.0%
TATGTCTTGTACTCTACTAA+TGG + chr4_2:59747563-59747582 None:intergenic 30.0%
TGATCAGCGAGTTATAAATA+TGG - chr4_2:59747839-59747858 Msa0611520:CDS 30.0%
! AAATGATTAATACTTGCTGC+AGG + chr4_2:59747984-59748003 None:intergenic 30.0%
!!! TCATTTGCTTTTTGTCTTTC+AGG - chr4_2:59747998-59748017 Msa0611520:CDS 30.0%
AATGTTACAGGAATCAACAA+GGG - chr4_2:59748117-59748136 Msa0611520:CDS 30.0%
! CTGTTACAAGATAGTATTGA+AGG - chr4_2:59748154-59748173 Msa0611520:CDS 30.0%
AATATAAACGGAGGTTTAAC+GGG + chr4_2:59748303-59748322 None:intergenic 30.0%
AGGAAAGAAAATATAAACGG+AGG + chr4_2:59748312-59748331 None:intergenic 30.0%
! CTTTCCTATTTTCCATTTGA+AGG - chr4_2:59748325-59748344 Msa0611520:CDS 30.0%
GAAACCTTCAAATGGAAAAT+AGG + chr4_2:59748332-59748351 None:intergenic 30.0%
!! GGTTTCAAATTTCTAGTGTT+AGG - chr4_2:59748346-59748365 Msa0611520:CDS 30.0%
!!! TACAAGTTTGGGTTTTGTTT+TGG - chr4_2:59748464-59748483 Msa0611520:five_prime_UTR 30.0%
!! CGGTTTTATAGCGTTAATGT+CGG + chr4_2:59744768-59744787 None:intergenic 35.0%
TCGATTTCGATTTCATCTCA+TGG - chr4_2:59744893-59744912 Msa0611520:three_prime_UTR 35.0%
CGATTTCGATTTCATCTCAT+GGG - chr4_2:59744894-59744913 Msa0611520:three_prime_UTR 35.0%
!! GATTGTGATTTTGAAGGTGA+AGG + chr4_2:59745110-59745129 None:intergenic 35.0%
! GTCTCTGATTGTGATTTTGA+AGG + chr4_2:59745116-59745135 None:intergenic 35.0%
! TAAAGCTTGACAGCGTTTTT+GGG + chr4_2:59745152-59745171 None:intergenic 35.0%
CATCTTTAATTGAAGTTCGG+TGG + chr4_2:59745345-59745364 None:intergenic 35.0%
GAAATTCAGTGACGAATTTC+CGG + chr4_2:59745442-59745461 None:intergenic 35.0%
TGCACGTTTGAGAATGTTTA+CGG - chr4_2:59745467-59745486 Msa0611520:intron 35.0%
TTAACCTTATTCTCTTCCGT+CGG + chr4_2:59745500-59745519 None:intergenic 35.0%
TAAGGTTAAGGTTTACGGTA+AGG - chr4_2:59745511-59745530 Msa0611520:intron 35.0%
GTTTACGGTAAGGAGTTTAT+CGG - chr4_2:59745521-59745540 Msa0611520:intron 35.0%
!!! ATGCTGGTTTTCAAGTTTAC+CGG - chr4_2:59745729-59745748 Msa0611520:intron 35.0%
!! AAGTTTACCGGAATTTTGAC+CGG - chr4_2:59745741-59745760 Msa0611520:intron 35.0%
TTGCTGTGAAATATGAAGGT+GGG - chr4_2:59745780-59745799 Msa0611520:intron 35.0%
!! CTCATCAACAAAGCCTTATT+CGG + chr4_2:59745824-59745843 None:intergenic 35.0%
!! GAATAAGGCTTTGTTGATGA+GGG - chr4_2:59745823-59745842 Msa0611520:intron 35.0%
AACCAGCTTGATATAGAAAC+AGG - chr4_2:59745908-59745927 Msa0611520:intron 35.0%
ACCAGCTTGATATAGAAACA+GGG - chr4_2:59745909-59745928 Msa0611520:intron 35.0%
AGTGGAAGTTTGAGAAAGAT+GGG - chr4_2:59745945-59745964 Msa0611520:intron 35.0%
TTTCAATGCTTTGCAACAAC+TGG - chr4_2:59746172-59746191 Msa0611520:intron 35.0%
! GGTCTTTTGATGGAAAGATA+AGG - chr4_2:59746215-59746234 Msa0611520:intron 35.0%
TTCGAATAAATCGATGAGGA+TGG - chr4_2:59746243-59746262 Msa0611520:intron 35.0%
TAACATCAACGCTTGTAATC+GGG + chr4_2:59746297-59746316 None:intergenic 35.0%
GTAACATCAACGCTTGTAAT+CGG + chr4_2:59746298-59746317 None:intergenic 35.0%
!!! AGCGTTGATGTTACTTTTGA+TGG - chr4_2:59746304-59746323 Msa0611520:intron 35.0%
GGGTACAACTGATACTTATT+TGG - chr4_2:59746339-59746358 Msa0611520:intron 35.0%
GGAACTACCAATAAGTTTCA+TGG - chr4_2:59746487-59746506 Msa0611520:intron 35.0%
ACTACCAATAAGTTTCATGG+TGG - chr4_2:59746490-59746509 Msa0611520:intron 35.0%
GATTGATTACCCATGAGAAA+TGG + chr4_2:59746516-59746535 None:intergenic 35.0%
TTTCATACACTGTACAGGTA+TGG + chr4_2:59746888-59746907 None:intergenic 35.0%
AGTTCTTTCATACACTGTAC+AGG + chr4_2:59746893-59746912 None:intergenic 35.0%
GGTATAGAACTATTGCATAG+CGG + chr4_2:59746974-59746993 None:intergenic 35.0%
TAGGATATCACAGGAAATAG+TGG - chr4_2:59747033-59747052 Msa0611520:CDS 35.0%
! CAGTCAGTGTTGTTAAATAG+TGG + chr4_2:59747085-59747104 None:intergenic 35.0%
TATAGGCTTATTACCATGTG+CGG - chr4_2:59747213-59747232 Msa0611520:CDS 35.0%
CTGTCTGATTTAGCAATAGT+AGG - chr4_2:59747273-59747292 Msa0611520:CDS 35.0%
GTCTGATTTAGCAATAGTAG+GGG - chr4_2:59747275-59747294 Msa0611520:CDS 35.0%
TCTGATTTAGCAATAGTAGG+GGG - chr4_2:59747276-59747295 Msa0611520:CDS 35.0%
ACGCTTTCTGTTTAAAAGCT+AGG - chr4_2:59747346-59747365 Msa0611520:CDS 35.0%
! TCACCCATCATTTTCAGAAT+CGG + chr4_2:59747460-59747479 None:intergenic 35.0%
! GCATGCTTTTAATAGAAGAC+AGG - chr4_2:59747734-59747753 Msa0611520:CDS 35.0%
AAACAAGGAATTCTATCTCG+AGG + chr4_2:59747878-59747897 None:intergenic 35.0%
TATGCAGCATGGAATAAACA+AGG + chr4_2:59747893-59747912 None:intergenic 35.0%
GAATGTTACAGGAATCAACA+AGG - chr4_2:59748116-59748135 Msa0611520:CDS 35.0%
ACGAGTCAATCATAGAATCA+CGG - chr4_2:59748177-59748196 Msa0611520:CDS 35.0%
CTGATAGAGCTAACTTTCAT+AGG + chr4_2:59748263-59748282 None:intergenic 35.0%
AACAGAAAAGCGGTTAAATG+CGG + chr4_2:59748577-59748596 None:intergenic 35.0%
AATAATTCAACCATCTGCCA+TGG + chr4_2:59748642-59748661 None:intergenic 35.0%
AGTCGGAATCGGAAAATTCA+CGG + chr4_2:59744941-59744960 None:intergenic 40.0%
TTGTTCGTCGTAATCTGAGT+CGG + chr4_2:59744958-59744977 None:intergenic 40.0%
! GTAAAGCTTGACAGCGTTTT+TGG + chr4_2:59745153-59745172 None:intergenic 40.0%
GTCAAGCTTTACCTTCACAT+CGG - chr4_2:59745161-59745180 Msa0611520:CDS 40.0%
GAGAGAATCCATTTAGCGTT+GGG + chr4_2:59745197-59745216 None:intergenic 40.0%
! GGTCAATGGATTCTCAAAGT+CGG - chr4_2:59745296-59745315 Msa0611520:CDS 40.0%
GAATTTCCGGTAGGATTCAT+CGG + chr4_2:59745429-59745448 None:intergenic 40.0%
TGTTTACGGTTTATCACCGA+CGG - chr4_2:59745481-59745500 Msa0611520:intron 40.0%
GACGGAAGAGAATAAGGTTA+AGG - chr4_2:59745499-59745518 Msa0611520:intron 40.0%
AAATCACCTCTAGACCGATA+AGG + chr4_2:59745626-59745645 None:intergenic 40.0%
TTTGATGGAGGAGTTTGAAG+AGG - chr4_2:59745643-59745662 Msa0611520:intron 40.0%
!! ACTGTTATCAAGAGCACCTA+GGG + chr4_2:59745696-59745715 None:intergenic 40.0%
!! AACTGTTATCAAGAGCACCT+AGG + chr4_2:59745697-59745716 None:intergenic 40.0%
!! AGTTTACCGGAATTTTGACC+GGG - chr4_2:59745742-59745761 Msa0611520:intron 40.0%
GTTGCTGTGAAATATGAAGG+TGG - chr4_2:59745779-59745798 Msa0611520:intron 40.0%
AATATGAAGGTGGGAATCTC+CGG - chr4_2:59745789-59745808 Msa0611520:intron 40.0%
!! CGAATAAGGCTTTGTTGATG+AGG - chr4_2:59745822-59745841 Msa0611520:intron 40.0%
!! TCCCTGTTTCTATATCAAGC+TGG + chr4_2:59745913-59745932 None:intergenic 40.0%
GAGTGGAAGTTTGAGAAAGA+TGG - chr4_2:59745944-59745963 Msa0611520:intron 40.0%
GTGGAAGTTTGAGAAAGATG+GGG - chr4_2:59745946-59745965 Msa0611520:intron 40.0%
ATGGGGCTGATATTACTATG+AGG - chr4_2:59745963-59745982 Msa0611520:intron 40.0%
TGGGGCTGATATTACTATGA+GGG - chr4_2:59745964-59745983 Msa0611520:intron 40.0%
TGATACCAAAGGGTCACAAT+TGG - chr4_2:59745997-59746016 Msa0611520:intron 40.0%
TGGGATATGCGTGATAGAAA+AGG - chr4_2:59746070-59746089 Msa0611520:intron 40.0%
!!! AGGGGCATCAATTTTCAAGA+GGG - chr4_2:59746143-59746162 Msa0611520:intron 40.0%
AACTGGAGATGGTTCAATTG+TGG - chr4_2:59746189-59746208 Msa0611520:intron 40.0%
AACATCAACGCTTGTAATCG+GGG + chr4_2:59746296-59746315 None:intergenic 40.0%
! TTTTGATGGAAAGTGGGTGT+TGG - chr4_2:59746318-59746337 Msa0611520:intron 40.0%
TTTGATGGAAAGTGGGTGTT+GGG - chr4_2:59746319-59746338 Msa0611520:intron 40.0%
AAAGATGGGAAGACAAAGAC+TGG - chr4_2:59746388-59746407 Msa0611520:intron 40.0%
!!! AAGACAAAGACTGGTTTTGG+TGG - chr4_2:59746397-59746416 Msa0611520:intron 40.0%
ATGGCCACCATGAAACTTAT+TGG + chr4_2:59746497-59746516 None:intergenic 40.0%
ATATGTGTGTGTGTGTGTGT+TGG + chr4_2:59746668-59746687 None:intergenic 40.0%
AACAGTAAAAGGGGTGATTC+AGG + chr4_2:59746738-59746757 None:intergenic 40.0%
! CACCCCTTTTACTGTTGAAA+AGG - chr4_2:59746742-59746761 Msa0611520:intron 40.0%
TCATGCACACAGTGTAATTG+TGG - chr4_2:59746919-59746938 Msa0611520:CDS 40.0%
! CACAGTGTAATTGTGGATTG+CGG - chr4_2:59746926-59746945 Msa0611520:CDS 40.0%
! TTGTGGATTGCGGAAAATAG+CGG - chr4_2:59746936-59746955 Msa0611520:CDS 40.0%
TATTACCATGTGCGGAAACT+AGG - chr4_2:59747221-59747240 Msa0611520:CDS 40.0%
ATTACCATGTGCGGAAACTA+GGG - chr4_2:59747222-59747241 Msa0611520:CDS 40.0%
!! ACTAGGGTGTTATTGGTACA+TGG - chr4_2:59747238-59747257 Msa0611520:CDS 40.0%
CTGATTTAGCAATAGTAGGG+GGG - chr4_2:59747277-59747296 Msa0611520:CDS 40.0%
! ATGGCCGATTCTGAAAATGA+TGG - chr4_2:59747453-59747472 Msa0611520:CDS 40.0%
! TGGCCGATTCTGAAAATGAT+GGG - chr4_2:59747454-59747473 Msa0611520:CDS 40.0%
AATGGGTAGCGTAAGTAATG+AGG - chr4_2:59747491-59747510 Msa0611520:CDS 40.0%
ATGGGTAGCGTAAGTAATGA+GGG - chr4_2:59747492-59747511 Msa0611520:CDS 40.0%
TTAATAGAAGACAGGACTGC+AGG - chr4_2:59747742-59747761 Msa0611520:CDS 40.0%
TAATAGAAGACAGGACTGCA+GGG - chr4_2:59747743-59747762 Msa0611520:CDS 40.0%
ATTCTATCTCGAGGTGCATT+TGG + chr4_2:59747869-59747888 None:intergenic 40.0%
! TGTGATATGGGATTTTCAGC+AGG - chr4_2:59748076-59748095 Msa0611520:CDS 40.0%
ACAGTGCTCATGAATGTTAC+AGG - chr4_2:59748105-59748124 Msa0611520:CDS 40.0%
!! GTTAGCTCTATCAGTATGTC+TGG - chr4_2:59748269-59748288 Msa0611520:CDS 40.0%
!!! ATGGCAATGCAGCTTTTTTC+TGG + chr4_2:59748623-59748642 None:intergenic 40.0%
AGAAAAAAGCTGCATTGCCA+TGG - chr4_2:59748622-59748641 Msa0611520:five_prime_UTR 40.0%
GTCGTAATCTGAGTCGGAAT+CGG + chr4_2:59744952-59744971 None:intergenic 45.0%
GGGATGAAGATTGAACGTCT+TGG + chr4_2:59745019-59745038 None:intergenic 45.0%
!! GAGGTTGGTGGAATGTGATT+GGG + chr4_2:59745039-59745058 None:intergenic 45.0%
!! TTGACAGCGTTTTTGGGAAG+TGG + chr4_2:59745146-59745165 None:intergenic 45.0%
AAGCTTTACCTTCACATCGG+CGG - chr4_2:59745164-59745183 Msa0611520:CDS 45.0%
GGAGAGAATCCATTTAGCGT+TGG + chr4_2:59745198-59745217 None:intergenic 45.0%
!!! GTCTTCGTCGTTTTTGACGA+AGG + chr4_2:59745240-59745259 None:intergenic 45.0%
CACAACAACGATGTTGCTCA+AGG - chr4_2:59745275-59745294 Msa0611520:CDS 45.0%
ACGATGTTGCTCAAGGTCAA+TGG - chr4_2:59745282-59745301 Msa0611520:CDS 45.0%
CGTTGGAGACGAAATCAACA+CGG + chr4_2:59745382-59745401 None:intergenic 45.0%
!! CGTGTTGATTTCGTCTCCAA+CGG - chr4_2:59745380-59745399 Msa0611520:intron 45.0%
TTCAGTGACGAATTTCCGGT+AGG + chr4_2:59745438-59745457 None:intergenic 45.0%
ATCACCGACGGAAGAGAATA+AGG - chr4_2:59745493-59745512 Msa0611520:intron 45.0%
ACGGTAAGGAGTTTATCGGT+TGG - chr4_2:59745525-59745544 Msa0611520:intron 45.0%
! CGGTAAGGAGTTTATCGGTT+GGG - chr4_2:59745526-59745545 Msa0611520:intron 45.0%
! GTTTATCGGTTGGGTTAAGC+CGG - chr4_2:59745535-59745554 Msa0611520:intron 45.0%
GGAAACTGCATCTTCCCAAA+CGG + chr4_2:59745576-59745595 None:intergenic 45.0%
TCGGTCTAGAGGTGATTTGA+TGG - chr4_2:59745628-59745647 Msa0611520:intron 45.0%
GTCTAGAGGTGATTTGATGG+AGG - chr4_2:59745631-59745650 Msa0611520:intron 45.0%
GAGTTTGAAGAGGCTGCAAA+TGG - chr4_2:59745653-59745672 Msa0611520:intron 45.0%
TTTGAAGAGGCTGCAAATGG+TGG - chr4_2:59745656-59745675 Msa0611520:intron 45.0%
GGTATTCAAACCCTAACCCT+AGG - chr4_2:59745677-59745696 Msa0611520:intron 45.0%
!! ATCAAGAGCACCTAGGGTTA+GGG + chr4_2:59745690-59745709 None:intergenic 45.0%
!! TATCAAGAGCACCTAGGGTT+AGG + chr4_2:59745691-59745710 None:intergenic 45.0%
!! GTTTACCGGAATTTTGACCG+GGG - chr4_2:59745743-59745762 Msa0611520:intron 45.0%
GAATTCCCCGGTCAAAATTC+CGG + chr4_2:59745751-59745770 None:intergenic 45.0%
! TTTTGACCGGGGAATTCGAA+AGG - chr4_2:59745754-59745773 Msa0611520:intron 45.0%
TTTGACCGGGGAATTCGAAA+GGG - chr4_2:59745755-59745774 Msa0611520:intron 45.0%
GGGGTTGCTGTGAAATATGA+AGG - chr4_2:59745776-59745795 Msa0611520:intron 45.0%
CTGATGAGTCCCTTGAATAG+TGG - chr4_2:59745863-59745882 Msa0611520:intron 45.0%
CAGGGAAGATTGTTTCAGAG+TGG - chr4_2:59745927-59745946 Msa0611520:intron 45.0%
AGGATCCAATTGTGACCCTT+TGG + chr4_2:59746005-59746024 None:intergenic 45.0%
AGGGTCACAATTGGATCCTT+CGG - chr4_2:59746006-59746025 Msa0611520:intron 45.0%
! CTTCGGAGTCGACGTTTTTA+GGG - chr4_2:59746023-59746042 Msa0611520:intron 45.0%
! CGAGTTCTCCAGTTTTGCAT+TGG - chr4_2:59746116-59746135 Msa0611520:intron 45.0%
! TCCAGTTTTGCATTGGAACC+AGG - chr4_2:59746123-59746142 Msa0611520:intron 45.0%
! CCAGTTTTGCATTGGAACCA+GGG - chr4_2:59746124-59746143 Msa0611520:intron 45.0%
! CAGTTTTGCATTGGAACCAG+GGG - chr4_2:59746125-59746144 Msa0611520:intron 45.0%
CTCTTGAAAATTGATGCCCC+TGG + chr4_2:59746144-59746163 None:intergenic 45.0%
!!! CAGGGGCATCAATTTTCAAG+AGG - chr4_2:59746142-59746161 Msa0611520:intron 45.0%
TGCTTTGCAACAACTGGAGA+TGG - chr4_2:59746178-59746197 Msa0611520:intron 45.0%
TGGAGATGGTTCAATTGTGG+TGG - chr4_2:59746192-59746211 Msa0611520:intron 45.0%
GGAGATGGTTCAATTGTGGT+GGG - chr4_2:59746193-59746212 Msa0611520:intron 45.0%
GAGATGGTTCAATTGTGGTG+GGG - chr4_2:59746194-59746213 Msa0611520:intron 45.0%
!! ATTGTGGTGGGGTCTTTTGA+TGG - chr4_2:59746205-59746224 Msa0611520:intron 45.0%
!!! GGGAAGACAAAGACTGGTTT+TGG - chr4_2:59746394-59746413 Msa0611520:intron 45.0%
!!! ACTGGTTTTGGTGGTCGTAT+GGG - chr4_2:59746406-59746425 Msa0611520:intron 45.0%
GGAGTGAGCTTCAACAATCT+AGG + chr4_2:59746448-59746467 None:intergenic 45.0%
ATTGTTGAAGCTCACTCCTC+TGG - chr4_2:59746450-59746469 Msa0611520:intron 45.0%
CACTCCTCTGGATTCACATT+TGG - chr4_2:59746462-59746481 Msa0611520:intron 45.0%
TTCATGGTGGCCATTTCTCA+TGG - chr4_2:59746503-59746522 Msa0611520:intron 45.0%
TCATGGTGGCCATTTCTCAT+GGG - chr4_2:59746504-59746523 Msa0611520:intron 45.0%
TCAAATGACGGTTATAGCGC+AGG + chr4_2:59746995-59747014 None:intergenic 45.0%
! TGCGGAAACTAGGGTGTTAT+TGG - chr4_2:59747231-59747250 Msa0611520:CDS 45.0%
!! GGGTGTTATTGGTACATGGA+TGG - chr4_2:59747242-59747261 Msa0611520:CDS 45.0%
! GTCTTTCAGGTCACTGAGAA+TGG - chr4_2:59748011-59748030 Msa0611520:CDS 45.0%
TGGGCAAGTTCAGTGTGATA+TGG - chr4_2:59748063-59748082 Msa0611520:CDS 45.0%
GGGCAAGTTCAGTGTGATAT+GGG - chr4_2:59748064-59748083 Msa0611520:CDS 45.0%
ATAGGAGTTGCTACCACCAA+CGG + chr4_2:59748245-59748264 None:intergenic 45.0%
! GTTTGGGTTTGCAAAGACTG+AGG - chr4_2:59748498-59748517 Msa0611520:five_prime_UTR 45.0%
!! ATATTTAAAAAAATTGTAAA+AGG - chr4_2:59747515-59747534 Msa0611520:CDS 5.0%
!!! AAATTTTGATTTTTTTTTTT+TGG - chr4_2:59747641-59747660 Msa0611520:CDS 5.0%
! CAAAGAACAGAGAGCGTGTC+AGG - chr4_2:59744727-59744746 Msa0611520:three_prime_UTR 50.0%
!! CGAGGTTGGTGGAATGTGAT+TGG + chr4_2:59745040-59745059 None:intergenic 50.0%
!! GTTTAGCGTCGACATCATCG+AGG + chr4_2:59745058-59745077 None:intergenic 50.0%
GCAACACTCCCAACGCTAAA+TGG - chr4_2:59745186-59745205 Msa0611520:CDS 50.0%
!! GTTTTTGACGAAGGCGTAGG+AGG + chr4_2:59745231-59745250 None:intergenic 50.0%
!!! GTCGTTTTTGACGAAGGCGT+AGG + chr4_2:59745234-59745253 None:intergenic 50.0%
TCGGTTCAAAAATCCGCGCT+AGG - chr4_2:59745315-59745334 Msa0611520:CDS 50.0%
CGGTTCAAAAATCCGCGCTA+GGG - chr4_2:59745316-59745335 Msa0611520:CDS 50.0%
AGACGAAATCAACACGGCGT+TGG + chr4_2:59745376-59745395 None:intergenic 50.0%
ATTTCGTCTCCAACGGTGTC+TGG - chr4_2:59745387-59745406 Msa0611520:intron 50.0%
TTTCGTCTCCAACGGTGTCT+GGG - chr4_2:59745388-59745407 Msa0611520:intron 50.0%
TTTAAGAGCCCAGACACCGT+TGG + chr4_2:59745399-59745418 None:intergenic 50.0%
TTCCCACCGATGAATCCTAC+CGG - chr4_2:59745420-59745439 Msa0611520:intron 50.0%
TTCCGGTAGGATTCATCGGT+GGG + chr4_2:59745425-59745444 None:intergenic 50.0%
TTTCCGGTAGGATTCATCGG+TGG + chr4_2:59745426-59745445 None:intergenic 50.0%
TTCCCAAACGGAATCATCCG+CGG + chr4_2:59745564-59745583 None:intergenic 50.0%
TTGGGAAGATGCAGTTTCCG+AGG - chr4_2:59745577-59745596 Msa0611520:intron 50.0%
GAAGATGCAGTTTCCGAGGA+TGG - chr4_2:59745581-59745600 Msa0611520:intron 50.0%
TTGACCGGGGAATTCGAAAG+GGG - chr4_2:59745756-59745775 Msa0611520:intron 50.0%
TGTGGCGCTCCACTATTCAA+GGG + chr4_2:59745875-59745894 None:intergenic 50.0%
ATGTGGCGCTCCACTATTCA+AGG + chr4_2:59745876-59745895 None:intergenic 50.0%
TGGTTCAGCTTCGAAGCATG+TGG + chr4_2:59745893-59745912 None:intergenic 50.0%
!! CCTAAAAACGTCGACTCCGA+AGG + chr4_2:59746025-59746044 None:intergenic 50.0%
! CCTTCGGAGTCGACGTTTTT+AGG - chr4_2:59746022-59746041 Msa0611520:intron 50.0%
!!! GGAGTCGACGTTTTTAGGGT+TGG - chr4_2:59746027-59746046 Msa0611520:intron 50.0%
CCCTGGTTCCAATGCAAAAC+TGG + chr4_2:59746127-59746146 None:intergenic 50.0%
ATCGATGAGGATGGCGAAGA+CGG - chr4_2:59746252-59746271 Msa0611520:intron 50.0%
!!! GACTGGTTTTGGTGGTCGTA+TGG - chr4_2:59746405-59746424 Msa0611520:intron 50.0%
! TTGGTGGTCGTATGGGAAAC+AGG - chr4_2:59746413-59746432 Msa0611520:intron 50.0%
GGTCGTATGGGAAACAGGAT+AGG - chr4_2:59746418-59746437 Msa0611520:intron 50.0%
CCAGCCAAATGTGAATCCAG+AGG + chr4_2:59746469-59746488 None:intergenic 50.0%
CCTCTGGATTCACATTTGGC+TGG - chr4_2:59746466-59746485 Msa0611520:intron 50.0%
AACACCCTAGTTTCCGCACA+TGG + chr4_2:59747229-59747248 None:intergenic 50.0%
TAGTAGGGGGGTAAACCTAG+TGG - chr4_2:59747289-59747308 Msa0611520:CDS 50.0%
AGTAGGGGGGTAAACCTAGT+GGG - chr4_2:59747290-59747309 Msa0611520:CDS 50.0%
! CAGAAAGTGCATGACCCACT+AGG + chr4_2:59747307-59747326 None:intergenic 50.0%
AAGACAGGACTGCAGGGAAA+TGG - chr4_2:59747749-59747768 Msa0611520:CDS 50.0%
CCAGATGCAAGTATGCAGCA+TGG + chr4_2:59747904-59747923 None:intergenic 50.0%
CCATGCTGCATACTTGCATC+TGG - chr4_2:59747901-59747920 Msa0611520:CDS 50.0%
GGAAAATTCACGGCCTTCGC+GGG + chr4_2:59744931-59744950 None:intergenic 55.0%
CGGAAAATTCACGGCCTTCG+CGG + chr4_2:59744932-59744951 None:intergenic 55.0%
GTCGACATCATCGAGGTTGG+TGG + chr4_2:59745051-59745070 None:intergenic 55.0%
!! AGCGTCGACATCATCGAGGT+TGG + chr4_2:59745054-59745073 None:intergenic 55.0%
GGCGTAGGAGGTTCGTTTGT+CGG + chr4_2:59745219-59745238 None:intergenic 55.0%
AAGCCGCGGATGATTCCGTT+TGG - chr4_2:59745558-59745577 Msa0611520:intron 55.0%
AGCCGCGGATGATTCCGTTT+GGG - chr4_2:59745559-59745578 Msa0611520:intron 55.0%
ATAAGGCTCCGGACTCTTCC+CGG + chr4_2:59745609-59745628 None:intergenic 55.0%
! GGAAGAGTCCGGAGCCTTAT+CGG - chr4_2:59745609-59745628 Msa0611520:intron 55.0%
CCTCTAGACCGATAAGGCTC+CGG + chr4_2:59745620-59745639 None:intergenic 55.0%
TGACCGGGGAATTCGAAAGG+GGG - chr4_2:59745757-59745776 Msa0611520:intron 55.0%
CAACCCCCTTTCGAATTCCC+CGG + chr4_2:59745763-59745782 None:intergenic 55.0%
! ATGGCGAAGACGGCTTTTCC+TGG - chr4_2:59746262-59746281 Msa0611520:intron 55.0%
! TGGCGAAGACGGCTTTTCCT+GGG - chr4_2:59746263-59746282 Msa0611520:intron 55.0%
! AAGACGGCTTTTCCTGGGCT+TGG - chr4_2:59746268-59746287 Msa0611520:intron 55.0%
ACTTGCCCACAGTCGCAACA+AGG + chr4_2:59748052-59748071 None:intergenic 55.0%
TACCACCAACGGAGCTTCAG+GGG + chr4_2:59748234-59748253 None:intergenic 55.0%
CTACCACCAACGGAGCTTCA+GGG + chr4_2:59748235-59748254 None:intergenic 55.0%
AGCTGCATTGCCATGGCAGA+TGG - chr4_2:59748629-59748648 Msa0611520:five_prime_UTR 55.0%
GGTACTTCTCAGTCCCGCGA+AGG - chr4_2:59744915-59744934 Msa0611520:three_prime_UTR 60.0%
! GAGTGTTGCCGCCGATGTGA+AGG + chr4_2:59745175-59745194 None:intergenic 60.0%
! GTTCGGTGGAAACCCTAGCG+CGG + chr4_2:59745331-59745350 None:intergenic 60.0%
TTGGGTTAAGCCGGAAGCCG+CGG - chr4_2:59745544-59745563 Msa0611520:intron 60.0%
ACGGAATCATCCGCGGCTTC+CGG + chr4_2:59745557-59745576 None:intergenic 60.0%
GCAGTTTCCGAGGATGGCTC+CGG - chr4_2:59745587-59745606 Msa0611520:intron 60.0%
CAGTTTCCGAGGATGGCTCC+GGG - chr4_2:59745588-59745607 Msa0611520:intron 60.0%
ACTCTTCCCGGAGCCATCCT+CGG + chr4_2:59745597-59745616 None:intergenic 60.0%
! CCGGAGCCTTATCGGTCTAG+AGG - chr4_2:59745617-59745636 Msa0611520:intron 60.0%
TGAAGGTGGGAATCTCCGGC+AGG - chr4_2:59745793-59745812 Msa0611520:intron 60.0%
CCTTATTCGGCGTCTCCTGC+CGG + chr4_2:59745811-59745830 None:intergenic 60.0%
GTAATCGGGGAACCAAGCCC+AGG + chr4_2:59746283-59746302 None:intergenic 60.0%
ACGCCACCTTGTTGCGACTG+TGG - chr4_2:59748043-59748062 Msa0611520:CDS 60.0%
CGCCACCTTGTTGCGACTGT+GGG - chr4_2:59748044-59748063 Msa0611520:CDS 60.0%
TGCCCACAGTCGCAACAAGG+TGG + chr4_2:59748049-59748068 None:intergenic 60.0%
GCTACCACCAACGGAGCTTC+AGG + chr4_2:59748236-59748255 None:intergenic 60.0%
GGATGGCTCCGGGAAGAGTC+CGG - chr4_2:59745598-59745617 Msa0611520:intron 65.0%
CCGGCAGGAGACGCCGAATA+AGG - chr4_2:59745808-59745827 Msa0611520:intron 65.0%
CGACTCCCCTGAAGCTCCGT+TGG - chr4_2:59748226-59748245 Msa0611520:CDS 65.0%
CTCCCCTGAAGCTCCGTTGG+TGG - chr4_2:59748229-59748248 Msa0611520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59744701 59748673 59744701 ID=Msa0611520;Name=Msa0611520
chr4_2 mRNA 59744701 59748673 59744701 ID=Msa0611520-mRNA-1;Parent=Msa0611520;Name=Msa0611520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=211|1|1|1|1|1|2|366|633
chr4_2 exon 59744701 59745354 59744701 ID=Msa0611520-mRNA-1:exon:15898;Parent=Msa0611520-mRNA-1
chr4_2 exon 59746849 59748673 59746849 ID=Msa0611520-mRNA-1:exon:15897;Parent=Msa0611520-mRNA-1
chr4_2 five_prime_UTR 59748463 59748673 59748463 ID=Msa0611520-mRNA-1:five_prime_utr;Parent=Msa0611520-mRNA-1
chr4_2 CDS 59746849 59748462 59746849 ID=Msa0611520-mRNA-1:cds;Parent=Msa0611520-mRNA-1
chr4_2 CDS 59745067 59745354 59745067 ID=Msa0611520-mRNA-1:cds;Parent=Msa0611520-mRNA-1
chr4_2 three_prime_UTR 59744701 59745066 59744701 ID=Msa0611520-mRNA-1:three_prime_utr;Parent=Msa0611520-mRNA-1
Gene Sequence

>Msa0611520

ATGGGTACTTCTCAGTCCCGCGAAGGCCGTGAATTTTCCGATTCCGACTCAGATTACGACGAACAAGACGACGATGAACAAGAACAAGAAGATCAAGATCAATACCAAGACGTTCAATCTTCATCCCAATCACATTCCACCAACCTCGATGATGTCGACGCTAAACTCAGTGCCTTAAAACTCAAATACTCTTCTCCTTCACCTTCAAAATCACAATCAGAGACAAAAACACCACTTCCCAAAAACGCTGTCAAGCTTTACCTTCACATCGGCGGCAACACTCCCAACGCTAAATGGATTCTCTCCGACAAACGAACCTCCTACGCCTTCGTCAAAAACGACGAAGACGAAGAAGACGACGAACACAACAACGATGTTGCTCAAGGTCAATGGATTCTCAAAGTCGGTTCAAAAATCCGCGCTAGGGTTTCCACCGAACTTCAATTAAAGATGTTTGGTGACCAACGCCGTGTTGATTTCGTCTCCAACGGTGTCTGGGCTCTTAAATTTCCCACCGATGAATCCTACCGGAAATTCGTCACTGAATTTCAAAACTGCACGTTTGAGAATGTTTACGGTTTATCACCGACGGAAGAGAATAAGGTTAAGGTTTACGGTAAGGAGTTTATCGGTTGGGTTAAGCCGGAAGCCGCGGATGATTCCGTTTGGGAAGATGCAGTTTCCGAGGATGGCTCCGGGAAGAGTCCGGAGCCTTATCGGTCTAGAGGTGATTTGATGGAGGAGTTTGAAGAGGCTGCAAATGGTGGTATTCAAACCCTAACCCTAGGTGCTCTTGATAACAGTTTTTTACTCAATGATGCTGGTTTTCAAGTTTACCGGAATTTTGACCGGGGAATTCGAAAGGGGGTTGCTGTGAAATATGAAGGTGGGAATCTCCGGCAGGAGACGCCGAATAAGGCTTTGTTGATGAGGGCAGAGACTAACATGATGCTGATGAGTCCCTTGAATAGTGGAGCGCCACATGCTTCGAAGCTGAACCAGCTTGATATAGAAACAGGGAAGATTGTTTCAGAGTGGAAGTTTGAGAAAGATGGGGCTGATATTACTATGAGGGATATCACAAATGATACCAAAGGGTCACAATTGGATCCTTCGGAGTCGACGTTTTTAGGGTTGGATGATAATAGGCTATGTCAATGGGATATGCGTGATAGAAAAGGAATTGTTCAGAATATAGCAACAGCGAGTTCTCCAGTTTTGCATTGGAACCAGGGGCATCAATTTTCAAGAGGGACTAATTTTCAATGCTTTGCAACAACTGGAGATGGTTCAATTGTGGTGGGGTCTTTTGATGGAAAGATAAGGTTGTATTCGAATAAATCGATGAGGATGGCGAAGACGGCTTTTCCTGGGCTTGGTTCCCCGATTACAAGCGTTGATGTTACTTTTGATGGAAAGTGGGTGTTGGGTACAACTGATACTTATTTGGTGTTGATTTGTACATTGTTTACTGATAAAGATGGGAAGACAAAGACTGGTTTTGGTGGTCGTATGGGAAACAGGATAGGTGCTCCTAGATTGTTGAAGCTCACTCCTCTGGATTCACATTTGGCTGGAACTACCAATAAGTTTCATGGTGGCCATTTCTCATGGGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCGACTGTGGGCAAGTTCAGTGTGATATGGGATTTTCAGCAGGTAAAGAACAGTGCTCATGAATGTTACAGGAATCAACAAGGGCTAAAAAGCTGTTACTGTTACAAGATAGTATTGAAGGACGAGTCAATCATAGAATCACGGTTTATGCATGACAACTATGCTGTTAGCGACTCCCCTGAAGCTCCGTTGGTGGTAGCAACTCCTATGAAAGTTAGCTCTATCAGTATGTCTGGAAAGCGAACCCGTTAA
Protein sequence

>Msa0611520

MGTSQSREGREFSDSDSDYDEQDDDEQEQEDQDQYQDVQSSSQSHSTNLDDVDAKLSALKLKYSSPSPSKSQSETKTPLPKNAVKLYLHIGGNTPNAKWILSDKRTSYAFVKNDEDEEDDEHNNDVAQGQWILKVGSKIRARVSTELQLKMFGDQRRVDFVSNGVWALKFPTDESYRKFVTEFQNCTFENVYGLSPTEENKVKVYGKEFIGWVKPEAADDSVWEDAVSEDGSGKSPEPYRSRGDLMEEFEEAANGGIQTLTLGALDNSFLLNDAGFQVYRNFDRGIRKGVAVKYEGGNLRQETPNKALLMRAETNMMLMSPLNSGAPHASKLNQLDIETGKIVSEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSPVLHWNQGHQFSRGTNFQCFATTGDGSIVVGSFDGKIRLYSNKSMRMAKTAFPGLGSPITSVDVTFDGKWVLGTTDTYLVLICTLFTDKDGKTKTGFGGRMGNRIGAPRLLKLTPLDSHLAGTTNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIIESRFMHDNYAVSDSPEAPLVVATPMKVSSISMSGKRTR*