AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0694220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694220 MtrunA17_Chr4g0044921 97.306 631 10 4 1 628 1 627 0.0 1263
Msa0694220 MtrunA17_Chr3g0133911 63.134 651 201 9 1 626 1 637 0.0 820
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0694220 AT3G19240.1 69.394 660 155 9 1 626 1 647 0.0 887
Msa0694220 AT4G33400.1 65.050 598 187 7 42 626 57 645 0.0 804

Find 195 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTACTCTTTCTTTAATT+TGG 0.094754 4_4:+63522341 None:intergenic
TCTCAATGATGCTGGCTTTC+AGG 0.112027 4_4:-63525144 Msa0694220:CDS
CTTTAATTTGGAAATTAAAA+AGG 0.197496 4_4:+63522353 None:intergenic
GAAACCTTCAAATGGAAAAT+AGG 0.222418 4_4:+63522551 None:intergenic
ATTTCGTCTCCAACGGTGTC+TGG 0.228016 4_4:-63525478 Msa0694220:CDS
GCAACACTCCCAACGCTAAA+TGG 0.243481 4_4:-63525667 Msa0694220:CDS
GAGAATAAGGTTAAGGTTTA+CGG 0.259733 4_4:-63525359 Msa0694220:CDS
GGGTACAACTGATACTTATT+TGG 0.269243 4_4:-63524526 Msa0694220:CDS
ATTGATTGATTATGGTATAT+TGG 0.273387 4_4:+63526031 None:intergenic
GAAATTCAGTGACGAATTTC+CGG 0.280068 4_4:+63525426 None:intergenic
TTGAAAATTGAAATTTGAAT+TGG 0.295141 4_4:+63526003 None:intergenic
TGCACGTTTGAGAATGTTTA+CGG 0.298124 4_4:-63525398 Msa0694220:CDS
CACTCCTCTGGATTCACATT+TGG 0.308842 4_4:-63524403 Msa0694220:CDS
GAATTCCCCGGTCAAAATTC+CGG 0.312404 4_4:+63525117 None:intergenic
TGATTTCGATTTCAATTTCA+TGG 0.324882 4_4:-63525957 Msa0694220:exon
GCTACCACCAACGGAGCTTC+AGG 0.325629 4_4:+63522647 None:intergenic
TTTGGTTATTACACAAGTTT+GGG 0.327977 4_4:-63522398 Msa0694220:three_prime_UTR
TTAGTTTGTGCAGAAAATTT+AGG 0.331071 4_4:-63522483 Msa0694220:three_prime_UTR
TGGTATATTGGGATTTGAAA+TGG 0.332104 4_4:+63526043 None:intergenic
ATGGCCACCATGAAACTTAT+TGG 0.332207 4_4:+63524371 None:intergenic
CCGGCAGGAGACGCCGAATA+AGG 0.333099 4_4:-63525057 Msa0694220:CDS
TTTGAATGCTTTGCAACAAC+TGG 0.335245 4_4:-63524693 Msa0694220:CDS
TATCAAGAGCACCTAGGGTT+AGG 0.337247 4_4:+63525177 None:intergenic
ATGCTGGCTTTCAGGTTTAC+CGG 0.345587 4_4:-63525136 Msa0694220:CDS
ATAAGGCTCCGGACTCTTCC+CGG 0.347959 4_4:+63525259 None:intergenic
ACGGAATCATCCGCGGCTTC+CGG 0.354674 4_4:+63525311 None:intergenic
GAACTTCAATTAAAGATGTT+TGG 0.356166 4_4:-63525518 Msa0694220:CDS
ATCACCGACGGAAGAGAATA+AGG 0.356376 4_4:-63525372 Msa0694220:CDS
CCCTGGTTCCAATGCAAAAC+TGG 0.356444 4_4:+63524741 None:intergenic
GGAAGAGTCCGGAGCCTTAT+CGG 0.358877 4_4:-63525256 Msa0694220:CDS
TTGATTGATTATGGTATATT+GGG 0.359456 4_4:+63526032 None:intergenic
GGGAAGACAAAGACTGGTTT+TGG 0.360962 4_4:-63524471 Msa0694220:CDS
GTAACATCAACGCTTGTAAT+CGG 0.364613 4_4:+63524570 None:intergenic
AACCAGCTTGATATAGAAAC+AGG 0.367263 4_4:-63524957 Msa0694220:CDS
CTCATCAACAAAGCCTTATT+CGG 0.367438 4_4:+63525044 None:intergenic
ACAGTGCTCATGAATGTTAC+AGG 0.367543 4_4:-63522775 Msa0694220:CDS
GGTTTCAAATTTCTAGTGTT+AGG 0.372480 4_4:-63522534 Msa0694220:three_prime_UTR
CTGATAGAGCTAACTTTCAT+AGG 0.376837 4_4:+63522620 None:intergenic
ATTGGGATTTGAAATGGAAA+TGG 0.377326 4_4:+63526049 None:intergenic
TGAAAATTGAAATTTGAATT+GGG 0.382648 4_4:+63526004 None:intergenic
TGGGCAAGTTCAGTGTGATA+TGG 0.385495 4_4:-63522817 Msa0694220:CDS
AATATAAACGGAGGTTTAAC+GGG 0.388303 4_4:+63522580 None:intergenic
GTTAGCTCTATCAGTATGTC+TGG 0.398499 4_4:-63522611 Msa0694220:CDS
TTGGTGGTCGTATGGGAAAC+AGG 0.400307 4_4:-63524452 Msa0694220:CDS
ATTGTTGAAGCTCACTCCTC+TGG 0.400548 4_4:-63524415 Msa0694220:CDS
AGCATAGCAGAGAGCGTGTC+AGG 0.405015 4_4:-63526119 Msa0694220:five_prime_UTR
GAGTGGAAGTTTGAGAAAGA+TGG 0.406716 4_4:-63524921 Msa0694220:CDS
GGCGTAGGAGGTTCGTTTGT+CGG 0.407065 4_4:+63525637 None:intergenic
ATTGTGGTGGGGTCTCTTGA+TGG 0.409543 4_4:-63524660 Msa0694220:CDS
GTTTACGGTAAGGAGTTTAT+CGG 0.411185 4_4:-63525344 Msa0694220:CDS
TAACATCAACGCTTGTAATC+GGG 0.416479 4_4:+63524571 None:intergenic
AATGGAAATGGATCAGTTAA+CGG 0.417671 4_4:+63526061 None:intergenic
TGGGTGTGATTGATTGATTA+TGG 0.420393 4_4:+63526023 None:intergenic
GTCTTTCAGGTCACTGAGAA+TGG 0.421407 4_4:-63522869 Msa0694220:intron
AAATATAAACGGAGGTTTAA+CGG 0.422537 4_4:+63522579 None:intergenic
ATCAAGAGCACCTAGGGTTA+GGG 0.431483 4_4:+63525178 None:intergenic
TCGGTCTAGAGGTGATTTGA+TGG 0.434873 4_4:-63525237 Msa0694220:CDS
AAACATCTTTAATTGAAGTT+CGG 0.437252 4_4:+63525520 None:intergenic
AGGATCCAATTGTGACCCTT+TGG 0.437994 4_4:+63524863 None:intergenic
CGGTAAGGAGTTTATCGGTT+GGG 0.438836 4_4:-63525339 Msa0694220:CDS
AGAAATTTGAAACCTTCAAA+TGG 0.441794 4_4:+63522543 None:intergenic
AAGCCGCGGATGATTCCGTT+TGG 0.443303 4_4:-63525307 Msa0694220:CDS
TGATACCAAAGGGTCACAAT+TGG 0.445124 4_4:-63524868 Msa0694220:CDS
ATGTGGCGCTCCACTATTCA+AGG 0.446889 4_4:+63524992 None:intergenic
CGAGGTTGGTGGAATGTGAT+TGG 0.450494 4_4:+63525816 None:intergenic
GAGAGAATCCATTTAGCGTT+GGG 0.450845 4_4:+63525659 None:intergenic
GTCGTAATCTGAGTCGGAAT+CGG 0.451640 4_4:+63525901 None:intergenic
CCTCTGGATTCACATTTGGC+TGG 0.454255 4_4:-63524399 Msa0694220:CDS
AGGGTCACAATTGGATCCTT+CGG 0.454835 4_4:-63524859 Msa0694220:CDS
AGCCGCGGATGATTCCGTTT+GGG 0.459582 4_4:-63525306 Msa0694220:CDS
ATGATAATAGGCTATGTCAA+TGG 0.461578 4_4:-63524815 Msa0694220:CDS
TTTCGTCTCCAACGGTGTCT+GGG 0.461909 4_4:-63525477 Msa0694220:CDS
GGAAAATTCACGGCCTTCGC+GGG 0.464185 4_4:+63525922 None:intergenic
GGAACTACCAATAAGTTTCA+TGG 0.465212 4_4:-63524378 Msa0694220:CDS
TTCATGGTGGCCATTTCTCA+TGG 0.466170 4_4:-63524362 Msa0694220:CDS
ATCGATGAGGATGGCGAAGA+CGG 0.468077 4_4:-63524613 Msa0694220:CDS
TGATGGCTCCGGGAAGAGTC+CGG 0.468191 4_4:-63525267 Msa0694220:CDS
AATATGAAGGTGGGAATCTC+CGG 0.468508 4_4:-63525076 Msa0694220:CDS
GACGGAAGAGAATAAGGTTA+AGG 0.470623 4_4:-63525366 Msa0694220:CDS
GCTGTTTCCGATGATGGCTC+CGG 0.471673 4_4:-63525278 Msa0694220:CDS
AATAGGAAAGAAAATATAAA+CGG 0.474520 4_4:+63522568 None:intergenic
CATCTTTAATTGAAGTTCGG+TGG 0.474570 4_4:+63525523 None:intergenic
CGGAAAATTCACGGCCTTCG+CGG 0.476321 4_4:+63525921 None:intergenic
TAAGGTTAAGGTTTACGGTA+AGG 0.479211 4_4:-63525354 Msa0694220:CDS
TTTGATGGAAAGTGGGTGTT+GGG 0.481016 4_4:-63524546 Msa0694220:CDS
CTGTTACAAGATAGTATTGA+AGG 0.484212 4_4:-63522726 Msa0694220:CDS
GAAGATGCTGTTTCCGATGA+TGG 0.484247 4_4:-63525284 Msa0694220:CDS
TCCCTGTTTCTATATCAAGC+TGG 0.490609 4_4:+63524955 None:intergenic
ACGATGTCGCTCAAGGTCAA+TGG 0.492537 4_4:-63525583 Msa0694220:CDS
CTCCCCTGAAGCTCCGTTGG+TGG 0.492757 4_4:-63522651 Msa0694220:CDS
CGACTCCCCTGAAGCTCCGT+TGG 0.497070 4_4:-63522654 Msa0694220:CDS
TGATAATAGGCTATGTCAAT+GGG 0.497189 4_4:-63524814 Msa0694220:CDS
GATTTCGATTTCAATTTCAT+GGG 0.497330 4_4:-63525956 Msa0694220:exon
AGTGGAAGTTTGAGAAAGAT+GGG 0.500651 4_4:-63524920 Msa0694220:CDS
GTTTATCGGTTGGGTGAAGC+CGG 0.501437 4_4:-63525330 Msa0694220:CDS
GATTGATTACCCATGAGAAA+TGG 0.502077 4_4:+63524352 None:intergenic
CCTTATTCGGCGTCTCCTGC+CGG 0.502524 4_4:+63525057 None:intergenic
CTCTTGAAAATTGATGCCCC+TGG 0.506880 4_4:+63524724 None:intergenic
ACATTGTTTACTGATAAAGA+TGG 0.508772 4_4:-63524492 Msa0694220:CDS
TGGGATATGCGTGATAGAAA+AGG 0.509675 4_4:-63524795 Msa0694220:CDS
GTAATCGGGGAACCAAGCCC+AGG 0.519099 4_4:+63524585 None:intergenic
CGAATAAGGCTTTGTTGATG+AGG 0.523505 4_4:-63525043 Msa0694220:CDS
GGGCAAGTTCAGTGTGATAT+GGG 0.523866 4_4:-63522816 Msa0694220:CDS
CTACCACCAACGGAGCTTCA+GGG 0.527377 4_4:+63522648 None:intergenic
CTGATGAGTCCCTTGAATAG+TGG 0.528395 4_4:-63525002 Msa0694220:CDS
GGAGAGAATCCATTTAGCGT+TGG 0.530109 4_4:+63525658 None:intergenic
ATGGGGCTGATATTACTATG+AGG 0.530532 4_4:-63524902 Msa0694220:CDS
GGAGTGAGCTTCAACAATCT+AGG 0.532631 4_4:+63524420 None:intergenic
AAATCACCTCTAGACCGATA+AGG 0.534172 4_4:+63525242 None:intergenic
ACGGTAAGGAGTTTATCGGT+TGG 0.534675 4_4:-63525340 Msa0694220:CDS
GAATTTCCGGTAGGATTCAT+CGG 0.534793 4_4:+63525439 None:intergenic
TTTGACCGGGGAATTCGAAA+GGG 0.535186 4_4:-63525110 Msa0694220:CDS
GTCGACATCATCGAGGTTGG+TGG 0.536613 4_4:+63525805 None:intergenic
CTGTTTCCGATGATGGCTCC+GGG 0.537725 4_4:-63525277 Msa0694220:CDS
TTCCGGTAGGATTCATCGGT+GGG 0.539088 4_4:+63525443 None:intergenic
AAAGATGGGAAGACAAAGAC+TGG 0.541574 4_4:-63524477 Msa0694220:CDS
GAGTTTGAAGAGGCTGCAAA+TGG 0.542974 4_4:-63525212 Msa0694220:CDS
CGCCACCTTGTTGCGACTGT+GGG 0.543451 4_4:-63522836 Msa0694220:CDS
GAGGTTGGTGGAATGTGATT+GGG 0.544190 4_4:+63525817 None:intergenic
GAACAAAACGATGTCGCTCA+AGG 0.552344 4_4:-63525590 Msa0694220:CDS
GGAGATGGTTCAATTGTGGT+GGG 0.552428 4_4:-63524672 Msa0694220:CDS
CGTGTTGATTTCGTCTCCAA+CGG 0.558067 4_4:-63525485 Msa0694220:CDS
TGGAGATGGTTCAATTGTGG+TGG 0.559045 4_4:-63524673 Msa0694220:CDS
GGGGTAGCTGTGAAATATGA+AGG 0.559703 4_4:-63525089 Msa0694220:CDS
ACTCTTCCCGGAGCCATCAT+CGG 0.560365 4_4:+63525271 None:intergenic
ACGCCACCTTGTTGCGACTG+TGG 0.560977 4_4:-63522837 Msa0694220:CDS
CATTGTTTACTGATAAAGAT+GGG 0.561253 4_4:-63524491 Msa0694220:CDS
ACTGTTATCAAGAGCACCTA+GGG 0.561865 4_4:+63525172 None:intergenic
AGTCGGAATCGGAAAATTCA+CGG 0.562438 4_4:+63525912 None:intergenic
TGCTTTGCAACAACTGGAGA+TGG 0.562443 4_4:-63524687 Msa0694220:CDS
TCATGGTGGCCATTTCTCAT+GGG 0.562447 4_4:-63524361 Msa0694220:intron
GGTCGTATGGGAAACAGGAT+AGG 0.565383 4_4:-63524447 Msa0694220:CDS
TTGGGTGAAGCCGGAAGCCG+CGG 0.568941 4_4:-63525321 Msa0694220:CDS
AGCGTCGACATCATCGAGGT+TGG 0.570308 4_4:+63525802 None:intergenic
CCTCTAGACCGATAAGGCTC+CGG 0.574522 4_4:+63525248 None:intergenic
ATAGGAGTTGCTACCACCAA+CGG 0.574538 4_4:+63522638 None:intergenic
TTCCCACCGATGAATCCTAC+CGG 0.575350 4_4:-63525445 Msa0694220:CDS
TTTAAGAGCCCAGACACCGT+TGG 0.580496 4_4:+63525469 None:intergenic
AGCTGCATTGCCATGGCAGA+TGG 0.582717 4_4:-63522251 Msa0694220:three_prime_UTR
TAGCTGTGAAATATGAAGGT+GGG 0.583398 4_4:-63525085 Msa0694220:CDS
ATATCACAAATGATACCAAA+GGG 0.586841 4_4:-63524878 Msa0694220:CDS
GGAAACAGCATCTTCCCAAA+CGG 0.591198 4_4:+63525292 None:intergenic
GGTATTCAAACCCTAACCCT+AGG 0.591767 4_4:-63525188 Msa0694220:CDS
GAATAAGGCTTTGTTGATGA+GGG 0.593377 4_4:-63525042 Msa0694220:CDS
GATATCACAAATGATACCAA+AGG 0.593545 4_4:-63524879 Msa0694220:CDS
TACCACCAACGGAGCTTCAG+GGG 0.595085 4_4:+63522649 None:intergenic
TTGTTCGTCGTAATCTGAGT+CGG 0.595936 4_4:+63525895 None:intergenic
AACATCAACGCTTGTAATCG+GGG 0.597890 4_4:+63524572 None:intergenic
TGGGGCTGATATTACTATGA+GGG 0.598346 4_4:-63524901 Msa0694220:CDS
TGAAGGTGGGAATCTCCGGC+AGG 0.605060 4_4:-63525072 Msa0694220:CDS
TTAACCTTATTCTCTTCCGT+CGG 0.609586 4_4:+63525368 None:intergenic
TTGACCGGGGAATTCGAAAG+GGG 0.609777 4_4:-63525109 Msa0694220:CDS
TTTGAAGAGGCTGCAAATGG+TGG 0.611463 4_4:-63525209 Msa0694220:CDS
CCGGAGCCTTATCGGTCTAG+AGG 0.612763 4_4:-63525248 Msa0694220:CDS
TGGTTCAGCTTCGAAGCATG+TGG 0.615986 4_4:+63524975 None:intergenic
GGGATGAAGATTGAACGTCT+TGG 0.616486 4_4:+63525837 None:intergenic
AATAATTCAACCATCTGCCA+TGG 0.618549 4_4:+63522241 None:intergenic
TTTCCGGTAGGATTCATCGG+TGG 0.620316 4_4:+63525442 None:intergenic
CAGGGAAGATTGTTTCAGAG+TGG 0.620928 4_4:-63524938 Msa0694220:CDS
TAAAGAAGAAAACAGAAAAG+CGG 0.621840 4_4:+63522296 None:intergenic
TTCGAATAAATCGATGAGGA+TGG 0.623115 4_4:-63524622 Msa0694220:CDS
GAGTGTTGCCGCCGATGTGA+AGG 0.626265 4_4:+63525681 None:intergenic
AGGAAAGAAAATATAAACGG+AGG 0.627026 4_4:+63522571 None:intergenic
AAGCTTTACCTTCACATCGG+CGG 0.627540 4_4:-63525689 Msa0694220:CDS
GGTCTCTTGATGGAAAGATA+AGG 0.629620 4_4:-63524650 Msa0694220:CDS
AACAGAAAAGCGGTTAAATG+CGG 0.630057 4_4:+63522306 None:intergenic
GTTTGGGTTTGCAAAGACTG+AGG 0.633350 4_4:-63522382 Msa0694220:three_prime_UTR
ACTTGCCCACAGTCGCAACA+AGG 0.634313 4_4:+63522831 None:intergenic
GGTCAATGGATTCTCAAAGT+CGG 0.637822 4_4:-63525569 Msa0694220:CDS
AACTGTTATCAAGAGCACCT+AGG 0.637908 4_4:+63525171 None:intergenic
GAGATGGTTCAATTGTGGTG+GGG 0.643174 4_4:-63524671 Msa0694220:CDS
TTTGATGGAGGAGTTTGAAG+AGG 0.645411 4_4:-63525222 Msa0694220:CDS
TGTGGCGCTCCACTATTCAA+GGG 0.647458 4_4:+63524993 None:intergenic
TTCAGTGACGAATTTCCGGT+AGG 0.648527 4_4:+63525430 None:intergenic
GTAGCTGTGAAATATGAAGG+TGG 0.649176 4_4:-63525086 Msa0694220:CDS
ACGAGTCAATCATAGAATCA+CGG 0.650778 4_4:-63522703 Msa0694220:CDS
TTAGAAATAAAAGAGATACA+TGG 0.658330 4_4:+63522457 None:intergenic
AACTGGAGATGGTTCAATTG+TGG 0.661094 4_4:-63524676 Msa0694220:CDS
GTCTAGAGGTGATTTGATGG+AGG 0.661438 4_4:-63525234 Msa0694220:CDS
TTCCCAAACGGAATCATCCG+CGG 0.661974 4_4:+63525304 None:intergenic
GGTACTTCTCAATCCCGCGA+AGG 0.669085 4_4:-63525935 Msa0694220:CDS
TGTTTACGGTTTATCACCGA+CGG 0.671523 4_4:-63525384 Msa0694220:CDS
GAATGTTACAGGAATCAACA+AGG 0.677359 4_4:-63522764 Msa0694220:CDS
ACCAGCTTGATATAGAAACA+GGG 0.678641 4_4:-63524956 Msa0694220:CDS
TGACCGGGGAATTCGAAAGG+GGG 0.680507 4_4:-63525108 Msa0694220:CDS
GTCAAGCTTTACCTTCACAT+CGG 0.680830 4_4:-63525692 Msa0694220:CDS
TGTATTCGAATAAATCGATG+AGG 0.688375 4_4:-63524626 Msa0694220:CDS
GTGGAAGTTTGAGAAAGATG+GGG 0.691794 4_4:-63524919 Msa0694220:CDS
CCAGCCAAATGTGAATCCAG+AGG 0.694133 4_4:+63524399 None:intergenic
AATGTTACAGGAATCAACAA+GGG 0.703235 4_4:-63522763 Msa0694220:CDS
TGCCCACAGTCGCAACAAGG+TGG 0.708774 4_4:+63522834 None:intergenic
CGTTGGAGACGAAATCAACA+CGG 0.722626 4_4:+63525486 None:intergenic
GTTCGGTGGAAACCCTAGCG+CGG 0.733834 4_4:+63525537 None:intergenic
ACTACCAATAAGTTTCATGG+TGG 0.735152 4_4:-63524375 Msa0694220:CDS
GTTTAGCGTCGACATCATCG+AGG 0.758315 4_4:+63525798 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATTGAAATTTGAATT+GGG + chr4_4:63522384-63522403 None:intergenic 15.0%
!! TTGAAAATTGAAATTTGAAT+TGG + chr4_4:63522385-63522404 None:intergenic 15.0%
!! ATATACAAATGAATATGAAT+GGG - chr4_4:63524131-63524150 Msa0694220:intron 15.0%
!!! ACAATGTTTTTGAATTAAAT+AGG - chr4_4:63524517-63524536 Msa0694220:CDS 15.0%
!! AATAGGAAAGAAAATATAAA+CGG + chr4_4:63525820-63525839 None:intergenic 15.0%
!!! CTTTAATTTGGAAATTAAAA+AGG + chr4_4:63526035-63526054 None:intergenic 15.0%
!! TTGATTGATTATGGTATATT+GGG + chr4_4:63522356-63522375 None:intergenic 20.0%
!! ATTGATTGATTATGGTATAT+TGG + chr4_4:63522357-63522376 None:intergenic 20.0%
!! AAACATCTTTAATTGAAGTT+CGG + chr4_4:63522868-63522887 None:intergenic 20.0%
!! CATATACAAATGAATATGAA+TGG - chr4_4:63524130-63524149 Msa0694220:intron 20.0%
!! AGGAATATAAAAAAAGTAGT+TGG + chr4_4:63524339-63524358 None:intergenic 20.0%
!! AGATAATGTTATCAGTAAAT+TGG - chr4_4:63525187-63525206 Msa0694220:CDS 20.0%
!! GATAATGTTATCAGTAAATT+GGG - chr4_4:63525188-63525207 Msa0694220:CDS 20.0%
!! TTAGAAATAAAAGAGATACA+TGG + chr4_4:63525931-63525950 None:intergenic 20.0%
!!! TTATTTTGTGATTACAAGTT+TGG - chr4_4:63525957-63525976 Msa0694220:exon 20.0%
!!! TATTTTGTGATTACAAGTTT+GGG - chr4_4:63525958-63525977 Msa0694220:exon 20.0%
!! AAACTACTCTTTCTTTAATT+TGG + chr4_4:63526047-63526066 None:intergenic 20.0%
! TGATTTCGATTTCAATTTCA+TGG - chr4_4:63522428-63522447 Msa0694220:three_prime_UTR 25.0%
! GATTTCGATTTCAATTTCAT+GGG - chr4_4:63522429-63522448 Msa0694220:three_prime_UTR 25.0%
!!! AGAAGAGTATTTGAGTTTTA+AGG + chr4_4:63522619-63522638 None:intergenic 25.0%
! GAACTTCAATTAAAGATGTT+TGG - chr4_4:63522867-63522886 Msa0694220:intron 25.0%
! ATATCACAAATGATACCAAA+GGG - chr4_4:63523507-63523526 Msa0694220:intron 25.0%
! ACATTGTTTACTGATAAAGA+TGG - chr4_4:63523893-63523912 Msa0694220:intron 25.0%
! CATTGTTTACTGATAAAGAT+GGG - chr4_4:63523894-63523913 Msa0694220:intron 25.0%
!! TATTTAATGTTGACTATGGT+GGG + chr4_4:63524234-63524253 None:intergenic 25.0%
!! TTATTTAATGTTGACTATGG+TGG + chr4_4:63524235-63524254 None:intergenic 25.0%
!! AGGTTATTTAATGTTGACTA+TGG + chr4_4:63524238-63524257 None:intergenic 25.0%
!! TTACCTTTTCAACAGTAAAA+GGG + chr4_4:63524268-63524287 None:intergenic 25.0%
! TGTCATTAACAAAGGAAATA+AGG + chr4_4:63524359-63524378 None:intergenic 25.0%
! AAAAGTTCTGTCATTAACAA+AGG + chr4_4:63524367-63524386 None:intergenic 25.0%
! TCAAAAACATTGTCAAATGA+CGG + chr4_4:63524510-63524529 None:intergenic 25.0%
! TGAATTAAATAGGATATCAC+AGG - chr4_4:63524527-63524546 Msa0694220:CDS 25.0%
!!! TTTTTAGTGGTAAACATTGA+TGG + chr4_4:63524647-63524666 None:intergenic 25.0%
! TTACAAAAGAAAACCTAGAA+TGG + chr4_4:63524672-63524691 None:intergenic 25.0%
!! TTCTAGGTTTTCTTTTGTAA+AGG - chr4_4:63524672-63524691 Msa0694220:CDS 25.0%
!! TCTAGGTTTTCTTTTGTAAA+GGG - chr4_4:63524673-63524692 Msa0694220:CDS 25.0%
!!! ATTAATTCTCTTGCTGTTAT+AGG - chr4_4:63524699-63524718 Msa0694220:CDS 25.0%
!! ACTTTCTGTTACTTATGTTT+GGG - chr4_4:63524822-63524841 Msa0694220:CDS 25.0%
! GTTAAGAAATCAAGTTATCA+TGG - chr4_4:63525097-63525116 Msa0694220:CDS 25.0%
!! AATTTCACTTAATGAGTTGA+TGG + chr4_4:63525129-63525148 None:intergenic 25.0%
! TGATCAGTGAGTTATAAATA+TGG - chr4_4:63525344-63525363 Msa0694220:CDS 25.0%
! GGAATGTTAATTTAAACTGA+TGG - chr4_4:63525427-63525446 Msa0694220:CDS 25.0%
! AAATATAAACGGAGGTTTAA+CGG + chr4_4:63525809-63525828 None:intergenic 25.0%
!! AGAAATTTGAAACCTTCAAA+TGG + chr4_4:63525845-63525864 None:intergenic 25.0%
!!! TTAGTTTGTGCAGAAAATTT+AGG - chr4_4:63525902-63525921 Msa0694220:CDS 25.0%
!!! ATCTCTTTTATTTCTAACAC+TGG - chr4_4:63525934-63525953 Msa0694220:CDS 25.0%
!!! TTTTGGTTATTACACAAGTT+TGG - chr4_4:63525986-63526005 Msa0694220:five_prime_UTR 25.0%
! TTTGGTTATTACACAAGTTT+GGG - chr4_4:63525987-63526006 Msa0694220:five_prime_UTR 25.0%
! TAAAGAAGAAAACAGAAAAG+CGG + chr4_4:63526092-63526111 None:intergenic 25.0%
AATGGAAATGGATCAGTTAA+CGG + chr4_4:63522327-63522346 None:intergenic 30.0%
! ATTGGGATTTGAAATGGAAA+TGG + chr4_4:63522339-63522358 None:intergenic 30.0%
TGGTATATTGGGATTTGAAA+TGG + chr4_4:63522345-63522364 None:intergenic 30.0%
GAGAATAAGGTTAAGGTTTA+CGG - chr4_4:63523026-63523045 Msa0694220:intron 30.0%
GATATCACAAATGATACCAA+AGG - chr4_4:63523506-63523525 Msa0694220:intron 30.0%
!!! TTTTAGGGTTGGATGATAAT+AGG - chr4_4:63523558-63523577 Msa0694220:intron 30.0%
ATGATAATAGGCTATGTCAA+TGG - chr4_4:63523570-63523589 Msa0694220:intron 30.0%
TGATAATAGGCTATGTCAAT+GGG - chr4_4:63523571-63523590 Msa0694220:intron 30.0%
TGTATTCGAATAAATCGATG+AGG - chr4_4:63523759-63523778 Msa0694220:intron 30.0%
!!! ATGTTACTTTTGATGGAAAG+TGG - chr4_4:63523831-63523850 Msa0694220:intron 30.0%
!!! TGTTACTTTTGATGGAAAGT+GGG - chr4_4:63523832-63523851 Msa0694220:intron 30.0%
ATCACTCTTCTCTATTATTG+TGG - chr4_4:63524053-63524072 Msa0694220:intron 30.0%
ATATGTCAATGCGAAATAGA+AGG + chr4_4:63524084-63524103 None:intergenic 30.0%
! TACCTTTTCAACAGTAAAAG+GGG + chr4_4:63524267-63524286 None:intergenic 30.0%
! CTTACCTTTTCAACAGTAAA+AGG + chr4_4:63524269-63524288 None:intergenic 30.0%
TACTGTTGAAAAGGTAAGTA+TGG - chr4_4:63524271-63524290 Msa0694220:intron 30.0%
ACCACTAAAAATTCCATTCT+AGG - chr4_4:63524656-63524675 Msa0694220:CDS 30.0%
!! ACCTAGAATGGAATTTTTAG+TGG + chr4_4:63524660-63524679 None:intergenic 30.0%
! CTAGGTTTTCTTTTGTAAAG+GGG - chr4_4:63524674-63524693 Msa0694220:CDS 30.0%
TGTCTGATTTAGCAATAGTA+GGG - chr4_4:63524777-63524796 Msa0694220:CDS 30.0%
! CACTTTCTGTTACTTATGTT+TGG - chr4_4:63524821-63524840 Msa0694220:CDS 30.0%
TTCACAATCGCACTATTATA+TGG + chr4_4:63524898-63524917 None:intergenic 30.0%
AATGCAGCAAGATGTATAAA+TGG - chr4_4:63524937-63524956 Msa0694220:CDS 30.0%
TGGGTGAGATTTAATGATAA+TGG - chr4_4:63524976-63524995 Msa0694220:CDS 30.0%
GGGTGAGATTTAATGATAAT+GGG - chr4_4:63524977-63524996 Msa0694220:CDS 30.0%
AAAGGATGAAAAACAAGTAC+AGG - chr4_4:63525036-63525055 Msa0694220:CDS 30.0%
TATGTCTTGTACTCTACTAA+TGG + chr4_4:63525066-63525085 None:intergenic 30.0%
! AAATGATTAATACTTGCTGC+AGG + chr4_4:63525489-63525508 None:intergenic 30.0%
!!! TCATTTGCTTTTTGTCTTTC+AGG - chr4_4:63525503-63525522 Msa0694220:CDS 30.0%
AATGTTACAGGAATCAACAA+GGG - chr4_4:63525622-63525641 Msa0694220:CDS 30.0%
! CTGTTACAAGATAGTATTGA+AGG - chr4_4:63525659-63525678 Msa0694220:CDS 30.0%
AATATAAACGGAGGTTTAAC+GGG + chr4_4:63525808-63525827 None:intergenic 30.0%
AGGAAAGAAAATATAAACGG+AGG + chr4_4:63525817-63525836 None:intergenic 30.0%
! CTTTCCTATTTTCCATTTGA+AGG - chr4_4:63525830-63525849 Msa0694220:CDS 30.0%
GAAACCTTCAAATGGAAAAT+AGG + chr4_4:63525837-63525856 None:intergenic 30.0%
!! GGTTTCAAATTTCTAGTGTT+AGG - chr4_4:63525851-63525870 Msa0694220:CDS 30.0%
!!! TACAAGTTTGGGTTTTGTTT+TGG - chr4_4:63525969-63525988 Msa0694220:five_prime_UTR 30.0%
!! CGGTTTTATAGCGTTAATGT+CGG + chr4_4:63522307-63522326 None:intergenic 35.0%
TGGGTGTGATTGATTGATTA+TGG + chr4_4:63522365-63522384 None:intergenic 35.0%
!! GATTGTGATTTTGAAGGTGA+AGG + chr4_4:63522642-63522661 None:intergenic 35.0%
! GTCTCTGATTGTGATTTTGA+AGG + chr4_4:63522648-63522667 None:intergenic 35.0%
! TAAAGCTTGACAGCGTTTTT+GGG + chr4_4:63522684-63522703 None:intergenic 35.0%
CATCTTTAATTGAAGTTCGG+TGG + chr4_4:63522865-63522884 None:intergenic 35.0%
GAAATTCAGTGACGAATTTC+CGG + chr4_4:63522962-63522981 None:intergenic 35.0%
TGCACGTTTGAGAATGTTTA+CGG - chr4_4:63522987-63523006 Msa0694220:intron 35.0%
TTAACCTTATTCTCTTCCGT+CGG + chr4_4:63523020-63523039 None:intergenic 35.0%
TAAGGTTAAGGTTTACGGTA+AGG - chr4_4:63523031-63523050 Msa0694220:intron 35.0%
GTTTACGGTAAGGAGTTTAT+CGG - chr4_4:63523041-63523060 Msa0694220:intron 35.0%
! AGTTTTCTTCTCAATGATGC+TGG - chr4_4:63523233-63523252 Msa0694220:intron 35.0%
TAGCTGTGAAATATGAAGGT+GGG - chr4_4:63523300-63523319 Msa0694220:intron 35.0%
!! CTCATCAACAAAGCCTTATT+CGG + chr4_4:63523344-63523363 None:intergenic 35.0%
!! GAATAAGGCTTTGTTGATGA+GGG - chr4_4:63523343-63523362 Msa0694220:intron 35.0%
AACCAGCTTGATATAGAAAC+AGG - chr4_4:63523428-63523447 Msa0694220:intron 35.0%
ACCAGCTTGATATAGAAACA+GGG - chr4_4:63523429-63523448 Msa0694220:intron 35.0%
AGTGGAAGTTTGAGAAAGAT+GGG - chr4_4:63523465-63523484 Msa0694220:intron 35.0%
TTTGAATGCTTTGCAACAAC+TGG - chr4_4:63523692-63523711 Msa0694220:intron 35.0%
TTCGAATAAATCGATGAGGA+TGG - chr4_4:63523763-63523782 Msa0694220:intron 35.0%
TAACATCAACGCTTGTAATC+GGG + chr4_4:63523817-63523836 None:intergenic 35.0%
GTAACATCAACGCTTGTAAT+CGG + chr4_4:63523818-63523837 None:intergenic 35.0%
!!! AGCGTTGATGTTACTTTTGA+TGG - chr4_4:63523824-63523843 Msa0694220:intron 35.0%
GGGTACAACTGATACTTATT+TGG - chr4_4:63523859-63523878 Msa0694220:intron 35.0%
GGAACTACCAATAAGTTTCA+TGG - chr4_4:63524007-63524026 Msa0694220:intron 35.0%
ACTACCAATAAGTTTCATGG+TGG - chr4_4:63524010-63524029 Msa0694220:intron 35.0%
GATTGATTACCCATGAGAAA+TGG + chr4_4:63524036-63524055 None:intergenic 35.0%
TTTCATACACTGTACAGGTA+TGG + chr4_4:63524393-63524412 None:intergenic 35.0%
AGTTCTTTCATACACTGTAC+AGG + chr4_4:63524398-63524417 None:intergenic 35.0%
GGTATAGAACTATTGCATAG+CGG + chr4_4:63524477-63524496 None:intergenic 35.0%
TAGGATATCACAGGAAATAG+TGG - chr4_4:63524536-63524555 Msa0694220:CDS 35.0%
! CAGTCAGTGTTGTTAAATAG+CGG + chr4_4:63524588-63524607 None:intergenic 35.0%
TATAGGCTTATTACCATGTG+CGG - chr4_4:63524716-63524735 Msa0694220:CDS 35.0%
CTGTCTGATTTAGCAATAGT+AGG - chr4_4:63524776-63524795 Msa0694220:CDS 35.0%
GTCTGATTTAGCAATAGTAG+GGG - chr4_4:63524778-63524797 Msa0694220:CDS 35.0%
TCTGATTTAGCAATAGTAGG+GGG - chr4_4:63524779-63524798 Msa0694220:CDS 35.0%
ACGCTTTCTGTTTAAAAGCT+AGG - chr4_4:63524849-63524868 Msa0694220:CDS 35.0%
! TCACCCATCATTTTCAGAAT+CGG + chr4_4:63524963-63524982 None:intergenic 35.0%
! GCATGCTTTTAATAGAAGAC+AGG - chr4_4:63525239-63525258 Msa0694220:CDS 35.0%
AAACAAGGAATTCTATCTCG+AGG + chr4_4:63525383-63525402 None:intergenic 35.0%
TATGCAGCATGGAATAAACA+AGG + chr4_4:63525398-63525417 None:intergenic 35.0%
GAATGTTACAGGAATCAACA+AGG - chr4_4:63525621-63525640 Msa0694220:CDS 35.0%
ACGAGTCAATCATAGAATCA+CGG - chr4_4:63525682-63525701 Msa0694220:CDS 35.0%
CTGATAGAGCTAACTTTCAT+AGG + chr4_4:63525768-63525787 None:intergenic 35.0%
AACAGAAAAGCGGTTAAATG+CGG + chr4_4:63526082-63526101 None:intergenic 35.0%
AATAATTCAACCATCTGCCA+TGG + chr4_4:63526147-63526166 None:intergenic 35.0%
AGTCGGAATCGGAAAATTCA+CGG + chr4_4:63522476-63522495 None:intergenic 40.0%
TTGTTCGTCGTAATCTGAGT+CGG + chr4_4:63522493-63522512 None:intergenic 40.0%
! GTAAAGCTTGACAGCGTTTT+TGG + chr4_4:63522685-63522704 None:intergenic 40.0%
GTCAAGCTTTACCTTCACAT+CGG - chr4_4:63522693-63522712 Msa0694220:CDS 40.0%
GAGAGAATCCATTTAGCGTT+GGG + chr4_4:63522729-63522748 None:intergenic 40.0%
!!! GTCTTCGTCATTTTTGACGA+AGG + chr4_4:63522772-63522791 None:intergenic 40.0%
! GGTCAATGGATTCTCAAAGT+CGG - chr4_4:63522816-63522835 Msa0694220:CDS 40.0%
GAATTTCCGGTAGGATTCAT+CGG + chr4_4:63522949-63522968 None:intergenic 40.0%
TGTTTACGGTTTATCACCGA+CGG - chr4_4:63523001-63523020 Msa0694220:intron 40.0%
GACGGAAGAGAATAAGGTTA+AGG - chr4_4:63523019-63523038 Msa0694220:intron 40.0%
AAATCACCTCTAGACCGATA+AGG + chr4_4:63523146-63523165 None:intergenic 40.0%
TTTGATGGAGGAGTTTGAAG+AGG - chr4_4:63523163-63523182 Msa0694220:intron 40.0%
!! ACTGTTATCAAGAGCACCTA+GGG + chr4_4:63523216-63523235 None:intergenic 40.0%
!! AACTGTTATCAAGAGCACCT+AGG + chr4_4:63523217-63523236 None:intergenic 40.0%
!! AGGTTTACCGGAATTTTGAC+CGG - chr4_4:63523261-63523280 Msa0694220:intron 40.0%
GTAGCTGTGAAATATGAAGG+TGG - chr4_4:63523299-63523318 Msa0694220:intron 40.0%
AATATGAAGGTGGGAATCTC+CGG - chr4_4:63523309-63523328 Msa0694220:intron 40.0%
!! CGAATAAGGCTTTGTTGATG+AGG - chr4_4:63523342-63523361 Msa0694220:intron 40.0%
!! TCCCTGTTTCTATATCAAGC+TGG + chr4_4:63523433-63523452 None:intergenic 40.0%
GAGTGGAAGTTTGAGAAAGA+TGG - chr4_4:63523464-63523483 Msa0694220:intron 40.0%
GTGGAAGTTTGAGAAAGATG+GGG - chr4_4:63523466-63523485 Msa0694220:intron 40.0%
ATGGGGCTGATATTACTATG+AGG - chr4_4:63523483-63523502 Msa0694220:intron 40.0%
TGGGGCTGATATTACTATGA+GGG - chr4_4:63523484-63523503 Msa0694220:intron 40.0%
TGATACCAAAGGGTCACAAT+TGG - chr4_4:63523517-63523536 Msa0694220:intron 40.0%
TGGGATATGCGTGATAGAAA+AGG - chr4_4:63523590-63523609 Msa0694220:intron 40.0%
!!! AGGGGCATCAATTTTCAAGA+GGG - chr4_4:63523663-63523682 Msa0694220:intron 40.0%
AACTGGAGATGGTTCAATTG+TGG - chr4_4:63523709-63523728 Msa0694220:intron 40.0%
GGTCTCTTGATGGAAAGATA+AGG - chr4_4:63523735-63523754 Msa0694220:intron 40.0%
AACATCAACGCTTGTAATCG+GGG + chr4_4:63523816-63523835 None:intergenic 40.0%
! TTTTGATGGAAAGTGGGTGT+TGG - chr4_4:63523838-63523857 Msa0694220:intron 40.0%
TTTGATGGAAAGTGGGTGTT+GGG - chr4_4:63523839-63523858 Msa0694220:intron 40.0%
AAAGATGGGAAGACAAAGAC+TGG - chr4_4:63523908-63523927 Msa0694220:intron 40.0%
!!! AAGACAAAGACTGGTTTTGG+TGG - chr4_4:63523917-63523936 Msa0694220:intron 40.0%
ATGGCCACCATGAAACTTAT+TGG + chr4_4:63524017-63524036 None:intergenic 40.0%
ATATGTGTGTGTGTGTGTGT+TGG + chr4_4:63524188-63524207 None:intergenic 40.0%
AACAGTAAAAGGGGTGATTC+AGG + chr4_4:63524258-63524277 None:intergenic 40.0%
! CACCCCTTTTACTGTTGAAA+AGG - chr4_4:63524262-63524281 Msa0694220:intron 40.0%
GTTCATGCACAGTGTAATTG+TGG - chr4_4:63524422-63524441 Msa0694220:CDS 40.0%
! CACAGTGTAATTGTGGATTG+CGG - chr4_4:63524429-63524448 Msa0694220:CDS 40.0%
! TTGTGGATTGCGGAAAATAG+CGG - chr4_4:63524439-63524458 Msa0694220:CDS 40.0%
TATTACCATGTGCGGAAACT+AGG - chr4_4:63524724-63524743 Msa0694220:CDS 40.0%
ATTACCATGTGCGGAAACTA+GGG - chr4_4:63524725-63524744 Msa0694220:CDS 40.0%
!! ACTAGGGTGTTATTGGTACA+TGG - chr4_4:63524741-63524760 Msa0694220:CDS 40.0%
CTGATTTAGCAATAGTAGGG+GGG - chr4_4:63524780-63524799 Msa0694220:CDS 40.0%
! ATGGCCGATTCTGAAAATGA+TGG - chr4_4:63524956-63524975 Msa0694220:CDS 40.0%
! TGGCCGATTCTGAAAATGAT+GGG - chr4_4:63524957-63524976 Msa0694220:CDS 40.0%
AATGGGTAGCGTAAGTAATG+AGG - chr4_4:63524994-63525013 Msa0694220:CDS 40.0%
ATGGGTAGCGTAAGTAATGA+GGG - chr4_4:63524995-63525014 Msa0694220:CDS 40.0%
TTAATAGAAGACAGGACTGC+AGG - chr4_4:63525247-63525266 Msa0694220:CDS 40.0%
TAATAGAAGACAGGACTGCA+GGG - chr4_4:63525248-63525267 Msa0694220:CDS 40.0%
ATTCTATCTCGAGGTGCATT+TGG + chr4_4:63525374-63525393 None:intergenic 40.0%
! TGTGATATGGGATTTTCAGC+AGG - chr4_4:63525581-63525600 Msa0694220:CDS 40.0%
ACAGTGCTCATGAATGTTAC+AGG - chr4_4:63525610-63525629 Msa0694220:CDS 40.0%
!! GTTAGCTCTATCAGTATGTC+TGG - chr4_4:63525774-63525793 Msa0694220:CDS 40.0%
!!! ATGGCAATGCAGCTTTTTTC+TGG + chr4_4:63526128-63526147 None:intergenic 40.0%
AGAAAAAAGCTGCATTGCCA+TGG - chr4_4:63526127-63526146 Msa0694220:five_prime_UTR 40.0%
GTCGTAATCTGAGTCGGAAT+CGG + chr4_4:63522487-63522506 None:intergenic 45.0%
GGGATGAAGATTGAACGTCT+TGG + chr4_4:63522551-63522570 None:intergenic 45.0%
!! GAGGTTGGTGGAATGTGATT+GGG + chr4_4:63522571-63522590 None:intergenic 45.0%
!! TTGACAGCGTTTTTGGGAAG+TGG + chr4_4:63522678-63522697 None:intergenic 45.0%
AAGCTTTACCTTCACATCGG+CGG - chr4_4:63522696-63522715 Msa0694220:CDS 45.0%
GGAGAGAATCCATTTAGCGT+TGG + chr4_4:63522730-63522749 None:intergenic 45.0%
!! ATTTTTGACGAAGGCGTAGG+AGG + chr4_4:63522763-63522782 None:intergenic 45.0%
!!! GTCATTTTTGACGAAGGCGT+AGG + chr4_4:63522766-63522785 None:intergenic 45.0%
GAACAAAACGATGTCGCTCA+AGG - chr4_4:63522795-63522814 Msa0694220:CDS 45.0%
CGTTGGAGACGAAATCAACA+CGG + chr4_4:63522902-63522921 None:intergenic 45.0%
!! CGTGTTGATTTCGTCTCCAA+CGG - chr4_4:63522900-63522919 Msa0694220:intron 45.0%
TTCAGTGACGAATTTCCGGT+AGG + chr4_4:63522958-63522977 None:intergenic 45.0%
ATCACCGACGGAAGAGAATA+AGG - chr4_4:63523013-63523032 Msa0694220:intron 45.0%
ACGGTAAGGAGTTTATCGGT+TGG - chr4_4:63523045-63523064 Msa0694220:intron 45.0%
! CGGTAAGGAGTTTATCGGTT+GGG - chr4_4:63523046-63523065 Msa0694220:intron 45.0%
GGAAACAGCATCTTCCCAAA+CGG + chr4_4:63523096-63523115 None:intergenic 45.0%
!! GAAGATGCTGTTTCCGATGA+TGG - chr4_4:63523101-63523120 Msa0694220:intron 45.0%
TCGGTCTAGAGGTGATTTGA+TGG - chr4_4:63523148-63523167 Msa0694220:intron 45.0%
GTCTAGAGGTGATTTGATGG+AGG - chr4_4:63523151-63523170 Msa0694220:intron 45.0%
GAGTTTGAAGAGGCTGCAAA+TGG - chr4_4:63523173-63523192 Msa0694220:intron 45.0%
TTTGAAGAGGCTGCAAATGG+TGG - chr4_4:63523176-63523195 Msa0694220:intron 45.0%
GGTATTCAAACCCTAACCCT+AGG - chr4_4:63523197-63523216 Msa0694220:intron 45.0%
!! ATCAAGAGCACCTAGGGTTA+GGG + chr4_4:63523210-63523229 None:intergenic 45.0%
!! TATCAAGAGCACCTAGGGTT+AGG + chr4_4:63523211-63523230 None:intergenic 45.0%
!! TCTCAATGATGCTGGCTTTC+AGG - chr4_4:63523241-63523260 Msa0694220:intron 45.0%
!! ATGCTGGCTTTCAGGTTTAC+CGG - chr4_4:63523249-63523268 Msa0694220:intron 45.0%
!! GGTTTACCGGAATTTTGACC+GGG - chr4_4:63523262-63523281 Msa0694220:intron 45.0%
!! GTTTACCGGAATTTTGACCG+GGG - chr4_4:63523263-63523282 Msa0694220:intron 45.0%
GAATTCCCCGGTCAAAATTC+CGG + chr4_4:63523271-63523290 None:intergenic 45.0%
! TTTTGACCGGGGAATTCGAA+AGG - chr4_4:63523274-63523293 Msa0694220:intron 45.0%
TTTGACCGGGGAATTCGAAA+GGG - chr4_4:63523275-63523294 Msa0694220:intron 45.0%
GGGGTAGCTGTGAAATATGA+AGG - chr4_4:63523296-63523315 Msa0694220:intron 45.0%
CTGATGAGTCCCTTGAATAG+TGG - chr4_4:63523383-63523402 Msa0694220:intron 45.0%
CAGGGAAGATTGTTTCAGAG+TGG - chr4_4:63523447-63523466 Msa0694220:intron 45.0%
AGGATCCAATTGTGACCCTT+TGG + chr4_4:63523525-63523544 None:intergenic 45.0%
AGGGTCACAATTGGATCCTT+CGG - chr4_4:63523526-63523545 Msa0694220:intron 45.0%
! CTTCGGAGTCGACGTTTTTA+GGG - chr4_4:63523543-63523562 Msa0694220:intron 45.0%
! CGAGTTCTCCAGTTTTGCAT+TGG - chr4_4:63523636-63523655 Msa0694220:intron 45.0%
! TCCAGTTTTGCATTGGAACC+AGG - chr4_4:63523643-63523662 Msa0694220:intron 45.0%
! CCAGTTTTGCATTGGAACCA+GGG - chr4_4:63523644-63523663 Msa0694220:intron 45.0%
! CAGTTTTGCATTGGAACCAG+GGG - chr4_4:63523645-63523664 Msa0694220:intron 45.0%
CTCTTGAAAATTGATGCCCC+TGG + chr4_4:63523664-63523683 None:intergenic 45.0%
!!! CAGGGGCATCAATTTTCAAG+AGG - chr4_4:63523662-63523681 Msa0694220:intron 45.0%
TGCTTTGCAACAACTGGAGA+TGG - chr4_4:63523698-63523717 Msa0694220:intron 45.0%
TGGAGATGGTTCAATTGTGG+TGG - chr4_4:63523712-63523731 Msa0694220:intron 45.0%
GGAGATGGTTCAATTGTGGT+GGG - chr4_4:63523713-63523732 Msa0694220:intron 45.0%
GAGATGGTTCAATTGTGGTG+GGG - chr4_4:63523714-63523733 Msa0694220:intron 45.0%
!!! GGGAAGACAAAGACTGGTTT+TGG - chr4_4:63523914-63523933 Msa0694220:intron 45.0%
!!! ACTGGTTTTGGTGGTCGTAT+GGG - chr4_4:63523926-63523945 Msa0694220:intron 45.0%
GGAGTGAGCTTCAACAATCT+AGG + chr4_4:63523968-63523987 None:intergenic 45.0%
ATTGTTGAAGCTCACTCCTC+TGG - chr4_4:63523970-63523989 Msa0694220:intron 45.0%
CACTCCTCTGGATTCACATT+TGG - chr4_4:63523982-63524001 Msa0694220:intron 45.0%
TTCATGGTGGCCATTTCTCA+TGG - chr4_4:63524023-63524042 Msa0694220:intron 45.0%
TCATGGTGGCCATTTCTCAT+GGG - chr4_4:63524024-63524043 Msa0694220:intron 45.0%
TCAAATGACGGTTATAGCGC+AGG + chr4_4:63524498-63524517 None:intergenic 45.0%
! TGCGGAAACTAGGGTGTTAT+TGG - chr4_4:63524734-63524753 Msa0694220:CDS 45.0%
!! GGGTGTTATTGGTACATGGA+TGG - chr4_4:63524745-63524764 Msa0694220:CDS 45.0%
! GTCTTTCAGGTCACTGAGAA+TGG - chr4_4:63525516-63525535 Msa0694220:CDS 45.0%
TGGGCAAGTTCAGTGTGATA+TGG - chr4_4:63525568-63525587 Msa0694220:CDS 45.0%
GGGCAAGTTCAGTGTGATAT+GGG - chr4_4:63525569-63525588 Msa0694220:CDS 45.0%
ATAGGAGTTGCTACCACCAA+CGG + chr4_4:63525750-63525769 None:intergenic 45.0%
! GTTTGGGTTTGCAAAGACTG+AGG - chr4_4:63526003-63526022 Msa0694220:five_prime_UTR 45.0%
!! ATATTTAAAAAAATTGTAAA+AGG - chr4_4:63525018-63525037 Msa0694220:CDS 5.0%
!!! ATTTTGATTTTTTTTTTTTT+TGG - chr4_4:63525146-63525165 Msa0694220:CDS 5.0%
!! CGAGGTTGGTGGAATGTGAT+TGG + chr4_4:63522572-63522591 None:intergenic 50.0%
!! GTTTAGCGTCGACATCATCG+AGG + chr4_4:63522590-63522609 None:intergenic 50.0%
GCAACACTCCCAACGCTAAA+TGG - chr4_4:63522718-63522737 Msa0694220:CDS 50.0%
ACGATGTCGCTCAAGGTCAA+TGG - chr4_4:63522802-63522821 Msa0694220:CDS 50.0%
TCGGTTCAAAAATCCGCGCT+AGG - chr4_4:63522835-63522854 Msa0694220:CDS 50.0%
CGGTTCAAAAATCCGCGCTA+GGG - chr4_4:63522836-63522855 Msa0694220:CDS 50.0%
ATTTCGTCTCCAACGGTGTC+TGG - chr4_4:63522907-63522926 Msa0694220:intron 50.0%
TTTCGTCTCCAACGGTGTCT+GGG - chr4_4:63522908-63522927 Msa0694220:intron 50.0%
TTTAAGAGCCCAGACACCGT+TGG + chr4_4:63522919-63522938 None:intergenic 50.0%
TTCCCACCGATGAATCCTAC+CGG - chr4_4:63522940-63522959 Msa0694220:intron 50.0%
TTCCGGTAGGATTCATCGGT+GGG + chr4_4:63522945-63522964 None:intergenic 50.0%
TTTCCGGTAGGATTCATCGG+TGG + chr4_4:63522946-63522965 None:intergenic 50.0%
! GTTTATCGGTTGGGTGAAGC+CGG - chr4_4:63523055-63523074 Msa0694220:intron 50.0%
TTCCCAAACGGAATCATCCG+CGG + chr4_4:63523084-63523103 None:intergenic 50.0%
TTGACCGGGGAATTCGAAAG+GGG - chr4_4:63523276-63523295 Msa0694220:intron 50.0%
TGTGGCGCTCCACTATTCAA+GGG + chr4_4:63523395-63523414 None:intergenic 50.0%
ATGTGGCGCTCCACTATTCA+AGG + chr4_4:63523396-63523415 None:intergenic 50.0%
TGGTTCAGCTTCGAAGCATG+TGG + chr4_4:63523413-63523432 None:intergenic 50.0%
!! CCTAAAAACGTCGACTCCGA+AGG + chr4_4:63523545-63523564 None:intergenic 50.0%
! CCTTCGGAGTCGACGTTTTT+AGG - chr4_4:63523542-63523561 Msa0694220:intron 50.0%
!!! GGAGTCGACGTTTTTAGGGT+TGG - chr4_4:63523547-63523566 Msa0694220:intron 50.0%
CCCTGGTTCCAATGCAAAAC+TGG + chr4_4:63523647-63523666 None:intergenic 50.0%
! ATTGTGGTGGGGTCTCTTGA+TGG - chr4_4:63523725-63523744 Msa0694220:intron 50.0%
ATCGATGAGGATGGCGAAGA+CGG - chr4_4:63523772-63523791 Msa0694220:intron 50.0%
!!! GACTGGTTTTGGTGGTCGTA+TGG - chr4_4:63523925-63523944 Msa0694220:intron 50.0%
! TTGGTGGTCGTATGGGAAAC+AGG - chr4_4:63523933-63523952 Msa0694220:intron 50.0%
GGTCGTATGGGAAACAGGAT+AGG - chr4_4:63523938-63523957 Msa0694220:intron 50.0%
CCAGCCAAATGTGAATCCAG+AGG + chr4_4:63523989-63524008 None:intergenic 50.0%
CCTCTGGATTCACATTTGGC+TGG - chr4_4:63523986-63524005 Msa0694220:intron 50.0%
AACACCCTAGTTTCCGCACA+TGG + chr4_4:63524732-63524751 None:intergenic 50.0%
TAGTAGGGGGGTAAACCTAG+TGG - chr4_4:63524792-63524811 Msa0694220:CDS 50.0%
AGTAGGGGGGTAAACCTAGT+GGG - chr4_4:63524793-63524812 Msa0694220:CDS 50.0%
! CAGAAAGTGCATGACCCACT+AGG + chr4_4:63524810-63524829 None:intergenic 50.0%
AAGACAGGACTGCAGGGAAA+TGG - chr4_4:63525254-63525273 Msa0694220:CDS 50.0%
CCAGATGCAAGTATGCAGCA+TGG + chr4_4:63525409-63525428 None:intergenic 50.0%
CCATGCTGCATACTTGCATC+TGG - chr4_4:63525406-63525425 Msa0694220:CDS 50.0%
! AGCATAGCAGAGAGCGTGTC+AGG - chr4_4:63522266-63522285 Msa0694220:three_prime_UTR 55.0%
GGTACTTCTCAATCCCGCGA+AGG - chr4_4:63522450-63522469 Msa0694220:three_prime_UTR 55.0%
GGAAAATTCACGGCCTTCGC+GGG + chr4_4:63522466-63522485 None:intergenic 55.0%
CGGAAAATTCACGGCCTTCG+CGG + chr4_4:63522467-63522486 None:intergenic 55.0%
GTCGACATCATCGAGGTTGG+TGG + chr4_4:63522583-63522602 None:intergenic 55.0%
!! AGCGTCGACATCATCGAGGT+TGG + chr4_4:63522586-63522605 None:intergenic 55.0%
GGCGTAGGAGGTTCGTTTGT+CGG + chr4_4:63522751-63522770 None:intergenic 55.0%
AAGCCGCGGATGATTCCGTT+TGG - chr4_4:63523078-63523097 Msa0694220:intron 55.0%
AGCCGCGGATGATTCCGTTT+GGG - chr4_4:63523079-63523098 Msa0694220:intron 55.0%
! GCTGTTTCCGATGATGGCTC+CGG - chr4_4:63523107-63523126 Msa0694220:intron 55.0%
! CTGTTTCCGATGATGGCTCC+GGG - chr4_4:63523108-63523127 Msa0694220:intron 55.0%
ACTCTTCCCGGAGCCATCAT+CGG + chr4_4:63523117-63523136 None:intergenic 55.0%
ATAAGGCTCCGGACTCTTCC+CGG + chr4_4:63523129-63523148 None:intergenic 55.0%
! GGAAGAGTCCGGAGCCTTAT+CGG - chr4_4:63523129-63523148 Msa0694220:intron 55.0%
CCTCTAGACCGATAAGGCTC+CGG + chr4_4:63523140-63523159 None:intergenic 55.0%
TGACCGGGGAATTCGAAAGG+GGG - chr4_4:63523277-63523296 Msa0694220:intron 55.0%
CTACCCCCTTTCGAATTCCC+CGG + chr4_4:63523283-63523302 None:intergenic 55.0%
! ATGGCGAAGACGGCTTTTCC+TGG - chr4_4:63523782-63523801 Msa0694220:intron 55.0%
! TGGCGAAGACGGCTTTTCCT+GGG - chr4_4:63523783-63523802 Msa0694220:intron 55.0%
! AAGACGGCTTTTCCTGGGCT+TGG - chr4_4:63523788-63523807 Msa0694220:intron 55.0%
ACTTGCCCACAGTCGCAACA+AGG + chr4_4:63525557-63525576 None:intergenic 55.0%
TACCACCAACGGAGCTTCAG+GGG + chr4_4:63525739-63525758 None:intergenic 55.0%
CTACCACCAACGGAGCTTCA+GGG + chr4_4:63525740-63525759 None:intergenic 55.0%
AGCTGCATTGCCATGGCAGA+TGG - chr4_4:63526134-63526153 Msa0694220:five_prime_UTR 55.0%
! GAGTGTTGCCGCCGATGTGA+AGG + chr4_4:63522707-63522726 None:intergenic 60.0%
! GTTCGGTGGAAACCCTAGCG+CGG + chr4_4:63522851-63522870 None:intergenic 60.0%
ACGGAATCATCCGCGGCTTC+CGG + chr4_4:63523077-63523096 None:intergenic 60.0%
TGATGGCTCCGGGAAGAGTC+CGG - chr4_4:63523118-63523137 Msa0694220:intron 60.0%
! CCGGAGCCTTATCGGTCTAG+AGG - chr4_4:63523137-63523156 Msa0694220:intron 60.0%
TGAAGGTGGGAATCTCCGGC+AGG - chr4_4:63523313-63523332 Msa0694220:intron 60.0%
CCTTATTCGGCGTCTCCTGC+CGG + chr4_4:63523331-63523350 None:intergenic 60.0%
GTAATCGGGGAACCAAGCCC+AGG + chr4_4:63523803-63523822 None:intergenic 60.0%
ACGCCACCTTGTTGCGACTG+TGG - chr4_4:63525548-63525567 Msa0694220:CDS 60.0%
CGCCACCTTGTTGCGACTGT+GGG - chr4_4:63525549-63525568 Msa0694220:CDS 60.0%
TGCCCACAGTCGCAACAAGG+TGG + chr4_4:63525554-63525573 None:intergenic 60.0%
GCTACCACCAACGGAGCTTC+AGG + chr4_4:63525741-63525760 None:intergenic 60.0%
TTGGGTGAAGCCGGAAGCCG+CGG - chr4_4:63523064-63523083 Msa0694220:intron 65.0%
CCGGCAGGAGACGCCGAATA+AGG - chr4_4:63523328-63523347 Msa0694220:intron 65.0%
CGACTCCCCTGAAGCTCCGT+TGG - chr4_4:63525731-63525750 Msa0694220:CDS 65.0%
CTCCCCTGAAGCTCCGTTGG+TGG - chr4_4:63525734-63525753 Msa0694220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 63522229 63526178 63522229 ID=Msa0694220;Name=Msa0694220
chr4_4 mRNA 63522229 63526178 63522229 ID=Msa0694220-mRNA-1;Parent=Msa0694220;Name=Msa0694220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=218|1|1|1|1|1|2|366|628
chr4_4 exon 63522229 63522882 63522229 ID=Msa0694220-mRNA-1:exon:17903;Parent=Msa0694220-mRNA-1
chr4_4 exon 63524362 63526178 63524362 ID=Msa0694220-mRNA-1:exon:17902;Parent=Msa0694220-mRNA-1
chr4_4 five_prime_UTR 63525961 63526178 63525961 ID=Msa0694220-mRNA-1:five_prime_utr;Parent=Msa0694220-mRNA-1
chr4_4 CDS 63524362 63525960 63524362 ID=Msa0694220-mRNA-1:cds;Parent=Msa0694220-mRNA-1
chr4_4 CDS 63522595 63522882 63522595 ID=Msa0694220-mRNA-1:cds;Parent=Msa0694220-mRNA-1
chr4_4 three_prime_UTR 63522229 63522594 63522229 ID=Msa0694220-mRNA-1:three_prime_utr;Parent=Msa0694220-mRNA-1
Gene Sequence

>Msa0694220

ATGGGTACTTCTCAATCCCGCGAAGGCCGTGAATTTTCCGATTCCGACTCAGATTACGACGAACAAGACGATGAACAAGAACAAGAAGATCAAGATCAATACCAAGACGTTCAATCTTCATCCCAATCACATTCCACCAACCTCGATGATGTCGACGCTAAACTCAGTGCCTTAAAACTCAAATACTCTTCTCCTTCACCTTCAAAATCACAATCAGAGACAAAAACACCACTTCCCAAAAACGCTGTCAAGCTTTACCTTCACATCGGCGGCAACACTCCCAACGCTAAATGGATTCTCTCCGACAAACGAACCTCCTACGCCTTCGTCAAAAATGACGAAGACGAAGAACAAAACGATGTCGCTCAAGGTCAATGGATTCTCAAAGTCGGTTCAAAAATCCGCGCTAGGGTTTCCACCGAACTTCAATTAAAGATGTTTGGTGATCAACGCCGTGTTGATTTCGTCTCCAACGGTGTCTGGGCTCTTAAATTTCCCACCGATGAATCCTACCGGAAATTCGTCACTGAATTTCAAAACTGCACGTTTGAGAATGTTTACGGTTTATCACCGACGGAAGAGAATAAGGTTAAGGTTTACGGTAAGGAGTTTATCGGTTGGGTGAAGCCGGAAGCCGCGGATGATTCCGTTTGGGAAGATGCTGTTTCCGATGATGGCTCCGGGAAGAGTCCGGAGCCTTATCGGTCTAGAGGTGATTTGATGGAGGAGTTTGAAGAGGCTGCAAATGGTGGTATTCAAACCCTAACCCTAGGTGCTCTTGATAACAGTTTTCTTCTCAATGATGCTGGCTTTCAGGTTTACCGGAATTTTGACCGGGGAATTCGAAAGGGGGTAGCTGTGAAATATGAAGGTGGGAATCTCCGGCAGGAGACGCCGAATAAGGCTTTGTTGATGAGGGCAGAGACTAACATGATGCTGATGAGTCCCTTGAATAGTGGAGCGCCACATGCTTCGAAGCTGAACCAGCTTGATATAGAAACAGGGAAGATTGTTTCAGAGTGGAAGTTTGAGAAAGATGGGGCTGATATTACTATGAGGGATATCACAAATGATACCAAAGGGTCACAATTGGATCCTTCGGAGTCGACGTTTTTAGGGTTGGATGATAATAGGCTATGTCAATGGGATATGCGTGATAGAAAAGGAATTGTTCAGAATATAGCGACAGCGAGTTCTCCAGTTTTGCATTGGAACCAGGGGCATCAATTTTCAAGAGGGACTAATTTTGAATGCTTTGCAACAACTGGAGATGGTTCAATTGTGGTGGGGTCTCTTGATGGAAAGATAAGGTTGTATTCGAATAAATCGATGAGGATGGCGAAGACGGCTTTTCCTGGGCTTGGTTCCCCGATTACAAGCGTTGATGTTACTTTTGATGGAAAGTGGGTGTTGGGTACAACTGATACTTATTTGGTGTTGATTTGTACATTGTTTACTGATAAAGATGGGAAGACAAAGACTGGTTTTGGTGGTCGTATGGGAAACAGGATAGGTGCTCCTAGATTGTTGAAGCTCACTCCTCTGGATTCACATTTGGCTGGAACTACCAATAAGTTTCATGGTGGCCATTTCTCATGGGTCACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCGACTGTGGGCAAGTTCAGTGTGATATGGGATTTTCAGCAGGTAAAGAACAGTGCTCATGAATGTTACAGGAATCAACAAGGGCTAAAAAGCTGTTACTGTTACAAGATAGTATTGAAGGACGAGTCAATCATAGAATCACGGTTTATGCATGACAACTATGCTGTTAGCGACTCCCCTGAAGCTCCGTTGGTGGTAGCAACTCCTATGAAAGTTAGCTCTATCAGTATGTCTGGAAAGCGAACCCGTTAA
Protein sequence

>Msa0694220

MGTSQSREGREFSDSDSDYDEQDDEQEQEDQDQYQDVQSSSQSHSTNLDDVDAKLSALKLKYSSPSPSKSQSETKTPLPKNAVKLYLHIGGNTPNAKWILSDKRTSYAFVKNDEDEEQNDVAQGQWILKVGSKIRARVSTELQLKMFGDQRRVDFVSNGVWALKFPTDESYRKFVTEFQNCTFENVYGLSPTEENKVKVYGKEFIGWVKPEAADDSVWEDAVSDDGSGKSPEPYRSRGDLMEEFEEAANGGIQTLTLGALDNSFLLNDAGFQVYRNFDRGIRKGVAVKYEGGNLRQETPNKALLMRAETNMMLMSPLNSGAPHASKLNQLDIETGKIVSEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSPVLHWNQGHQFSRGTNFECFATTGDGSIVVGSLDGKIRLYSNKSMRMAKTAFPGLGSPITSVDVTFDGKWVLGTTDTYLVLICTLFTDKDGKTKTGFGGRMGNRIGAPRLLKLTPLDSHLAGTTNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIIESRFMHDNYAVSDSPEAPLVVATPMKVSSISMSGKRTR*