Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612440 | XP_003607607.1 | 99.571 | 233 | 1 | 0 | 1 | 233 | 629 | 861 | 3.09e-161 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612440 | sp|Q9LMI0|TPS7_ARATH | 77.130 | 223 | 51 | 0 | 1 | 223 | 618 | 840 | 2.03e-117 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612440 | Msa0649460 | 0.863587 | 2.238180e-64 | -8.615850e-47 |
| Msa0374990 | Msa0612440 | -0.810046 | 1.400209e-50 | -8.615850e-47 |
| Msa0555410 | Msa0612440 | 0.880668 | 4.542173e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612440 | MtrunA17_Chr4g0041381 | 99.571 | 233 | 1 | 0 | 1 | 233 | 629 | 861 | 2.84e-165 | 478 |
| Msa0612440 | MtrunA17_Chr1g0161531 | 66.063 | 221 | 74 | 1 | 1 | 221 | 631 | 850 | 1.26e-98 | 305 |
| Msa0612440 | MtrunA17_Chr8g0364961 | 63.393 | 224 | 82 | 0 | 1 | 224 | 618 | 841 | 1.35e-97 | 302 |
| Msa0612440 | MtrunA17_Chr1g0209251 | 64.574 | 223 | 77 | 1 | 1 | 223 | 624 | 844 | 7.99e-97 | 300 |
| Msa0612440 | MtrunA17_Chr8g0391971 | 64.253 | 221 | 77 | 1 | 1 | 221 | 630 | 848 | 4.61e-95 | 296 |
| Msa0612440 | MtrunA17_Chr4g0073041 | 62.727 | 220 | 78 | 1 | 1 | 220 | 623 | 838 | 4.91e-91 | 285 |
| Msa0612440 | MtrunA17_Chr3g0117891 | 54.286 | 210 | 96 | 0 | 1 | 210 | 543 | 752 | 5.09e-67 | 220 |
| Msa0612440 | MtrunA17_Chr2g0314621 | 36.158 | 177 | 105 | 6 | 1 | 171 | 661 | 835 | 2.43e-24 | 100 |
| Msa0612440 | MtrunA17_Chr8g0359371 | 35.028 | 177 | 105 | 7 | 1 | 169 | 622 | 796 | 1.07e-21 | 93.2 |
| Msa0612440 | MtrunA17_Chr8g0380061 | 32.759 | 174 | 111 | 4 | 3 | 171 | 225 | 397 | 2.69e-21 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612440 | AT1G06410.3 | 77.130 | 223 | 51 | 0 | 1 | 223 | 618 | 840 | 2.06e-118 | 357 |
| Msa0612440 | AT1G06410.1 | 77.130 | 223 | 51 | 0 | 1 | 223 | 618 | 840 | 2.06e-118 | 357 |
| Msa0612440 | AT1G06410.2 | 77.130 | 223 | 51 | 0 | 1 | 223 | 618 | 840 | 2.06e-118 | 357 |
| Msa0612440 | AT1G68020.2 | 62.896 | 221 | 82 | 0 | 1 | 221 | 635 | 855 | 8.29e-95 | 296 |
| Msa0612440 | AT1G68020.3 | 62.896 | 221 | 82 | 0 | 1 | 221 | 635 | 855 | 8.29e-95 | 296 |
| Msa0612440 | AT1G70290.2 | 62.385 | 218 | 82 | 0 | 1 | 218 | 581 | 798 | 1.96e-93 | 291 |
| Msa0612440 | AT1G60140.6 | 60.268 | 224 | 89 | 0 | 1 | 224 | 624 | 847 | 2.84e-93 | 291 |
| Msa0612440 | AT1G60140.1 | 60.268 | 224 | 89 | 0 | 1 | 224 | 624 | 847 | 2.84e-93 | 291 |
| Msa0612440 | AT1G60140.2 | 60.268 | 224 | 89 | 0 | 1 | 224 | 624 | 847 | 2.84e-93 | 291 |
| Msa0612440 | AT1G60140.5 | 60.268 | 224 | 89 | 0 | 1 | 224 | 624 | 847 | 2.84e-93 | 291 |
| Msa0612440 | AT1G60140.4 | 60.268 | 224 | 89 | 0 | 1 | 224 | 624 | 847 | 2.84e-93 | 291 |
| Msa0612440 | AT4G17770.1 | 62.500 | 216 | 81 | 0 | 2 | 217 | 625 | 840 | 3.69e-93 | 291 |
| Msa0612440 | AT4G17770.2 | 62.500 | 216 | 81 | 0 | 2 | 217 | 625 | 840 | 3.69e-93 | 291 |
| Msa0612440 | AT1G70290.1 | 62.385 | 218 | 82 | 0 | 1 | 218 | 619 | 836 | 4.69e-93 | 291 |
| Msa0612440 | AT1G23870.1 | 60.538 | 223 | 88 | 0 | 1 | 223 | 624 | 846 | 2.76e-92 | 289 |
| Msa0612440 | AT2G18700.1 | 61.504 | 226 | 81 | 3 | 1 | 223 | 616 | 838 | 3.17e-87 | 276 |
| Msa0612440 | AT1G60140.3 | 64.885 | 131 | 46 | 0 | 1 | 131 | 624 | 754 | 3.17e-56 | 191 |
| Msa0612440 | AT4G27550.2 | 29.960 | 247 | 146 | 8 | 1 | 222 | 542 | 786 | 2.80e-25 | 103 |
| Msa0612440 | AT4G27550.1 | 29.960 | 247 | 146 | 8 | 1 | 222 | 551 | 795 | 2.86e-25 | 103 |
| Msa0612440 | AT1G16980.1 | 29.915 | 234 | 151 | 7 | 1 | 223 | 547 | 778 | 2.89e-23 | 98.2 |
| Msa0612440 | AT1G78580.4 | 33.714 | 175 | 108 | 6 | 1 | 169 | 633 | 805 | 3.27e-22 | 95.1 |
| Msa0612440 | AT1G78580.1 | 33.714 | 175 | 108 | 6 | 1 | 169 | 633 | 805 | 3.27e-22 | 95.1 |
| Msa0612440 | AT1G78580.2 | 33.714 | 175 | 108 | 6 | 1 | 169 | 633 | 805 | 3.27e-22 | 95.1 |
| Msa0612440 | AT1G78580.3 | 33.714 | 175 | 108 | 6 | 1 | 169 | 633 | 805 | 3.27e-22 | 95.1 |
| Msa0612440 | AT1G68020.1 | 69.048 | 42 | 13 | 0 | 1 | 42 | 635 | 676 | 3.16e-14 | 72.0 |
Find 56 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGTAATTGCTCTGATTT+TGG | 0.190443 | 4_2:+60899127 | Msa0612440:CDS |
| ACTGAGGTTTCTCCTGATTT+AGG | 0.229245 | 4_2:+60900711 | Msa0612440:three_prime_UTR |
| AATAAATATGCTAGAATCTT+TGG | 0.258899 | 4_2:+60900624 | Msa0612440:CDS |
| TCTGTATATAGTTTCATTAC+AGG | 0.258995 | 4_2:-60899169 | None:intergenic |
| AGGGATGCCGACCTTGGTTT+TGG | 0.277265 | 4_2:+60899247 | Msa0612440:CDS |
| GTAATATTCTTTGCGACAAT+TGG | 0.295825 | 4_2:+60900766 | Msa0612440:three_prime_UTR |
| AGATAATACTTTGCTTTACT+TGG | 0.315020 | 4_2:-60900583 | None:intergenic |
| GGAGAAACCTCAGTCAAGTT+TGG | 0.341491 | 4_2:-60900702 | None:intergenic |
| TGACCACTCTTTGCGGCAAC+AGG | 0.344178 | 4_2:-60899325 | None:intergenic |
| GTGCTTTGGTTTGGCAATAC+AGG | 0.355182 | 4_2:+60899227 | Msa0612440:CDS |
| ACTTTCCTTTCGTTCAATAC+TGG | 0.357028 | 4_2:-60899206 | None:intergenic |
| AAGTAAAGCAAAGTATTATC+TGG | 0.370428 | 4_2:+60900585 | Msa0612440:CDS |
| TCACCATGCATAGAAGAATC+TGG | 0.371337 | 4_2:+60900664 | Msa0612440:CDS |
| TAATATTCTTTGCGACAATT+GGG | 0.374062 | 4_2:+60900767 | Msa0612440:three_prime_UTR |
| AGATCATCTAGAAAGTGTTT+TGG | 0.381754 | 4_2:+60899294 | Msa0612440:CDS |
| AGTTTCCCATTCACCGTCTT+GGG | 0.399757 | 4_2:-60899104 | None:intergenic |
| CTTTGCGGCAACAGGCTCAT+TGG | 0.407919 | 4_2:-60899317 | None:intergenic |
| TGAACGAAAGGAAAGTGCTT+TGG | 0.417964 | 4_2:+60899213 | Msa0612440:CDS |
| GAAAGGAAAGTGCTTTGGTT+TGG | 0.425700 | 4_2:+60899218 | Msa0612440:CDS |
| GGTGGTCCCAAGACGGTGAA+TGG | 0.434178 | 4_2:+60899098 | Msa0612440:intron |
| TCTGTATTTGCTTGCACGGT+TGG | 0.440122 | 4_2:+60900553 | Msa0612440:CDS |
| CTTGGAATTGCTGCAGAACA+TGG | 0.454255 | 4_2:+60898494 | Msa0612440:CDS |
| GATAAACTGACCACTCTTTG+CGG | 0.461574 | 4_2:-60899332 | None:intergenic |
| CATTGTTAGTGGACGGGGTA+GGG | 0.464339 | 4_2:+60898436 | Msa0612440:CDS |
| CACCATGCATAGAAGAATCT+GGG | 0.476735 | 4_2:+60900665 | Msa0612440:CDS |
| TGCTTCTGTATTTGCTTGCA+CGG | 0.482357 | 4_2:+60900549 | Msa0612440:CDS |
| AAGTTTCCCATTCACCGTCT+TGG | 0.485112 | 4_2:-60899105 | None:intergenic |
| AGCAAATACAGAAGCATTGG+AGG | 0.488464 | 4_2:-60900542 | None:intergenic |
| AATGACTGAAAGTGACAAAC+AGG | 0.491293 | 4_2:+60900432 | Msa0612440:CDS |
| GTAGGGATAGCTTAAGTGAA+TGG | 0.505507 | 4_2:+60898453 | Msa0612440:CDS |
| GCTGACTTTGTCCTGTGTGT+TGG | 0.508603 | 4_2:+60900454 | Msa0612440:CDS |
| TGCTTTGGTTTGGCAATACA+GGG | 0.511440 | 4_2:+60899228 | Msa0612440:CDS |
| CAATACAGGGATGCCGACCT+TGG | 0.520176 | 4_2:+60899241 | Msa0612440:CDS |
| TCATTGTTAGTGGACGGGGT+AGG | 0.521156 | 4_2:+60898435 | Msa0612440:CDS |
| GCAAGCAAATACAGAAGCAT+TGG | 0.525460 | 4_2:-60900545 | None:intergenic |
| GTGGTCCCAAGACGGTGAAT+GGG | 0.525548 | 4_2:+60899099 | Msa0612440:CDS |
| GATAAACAGAGAAAATGAAA+AGG | 0.539477 | 4_2:-60900818 | None:intergenic |
| CTTGAATCCAAACTTGACTG+AGG | 0.572634 | 4_2:+60900695 | Msa0612440:exon |
| TCCCCAGATTCTTCTATGCA+TGG | 0.572909 | 4_2:-60900667 | None:intergenic |
| GAGCCTGTTGCCGCAAAGAG+TGG | 0.574335 | 4_2:+60899322 | Msa0612440:CDS |
| TATCGTTGAAGTGAAGCCCC+AGG | 0.581315 | 4_2:+60899351 | Msa0612440:CDS |
| GCATTGCAGGATGTGAGCAA+AGG | 0.581846 | 4_2:+60900382 | Msa0612440:intron |
| CAGTCAAGTTTGGATTCAAG+AGG | 0.585127 | 4_2:-60900692 | None:intergenic |
| AATATTCTTTGCGACAATTG+GGG | 0.592899 | 4_2:+60900768 | Msa0612440:three_prime_UTR |
| TGGTTCCAGTATTGAACGAA+AGG | 0.595735 | 4_2:+60899201 | Msa0612440:CDS |
| AGAAGATCCAAAACCAAGGT+CGG | 0.600676 | 4_2:-60899254 | None:intergenic |
| CTATATACAGAGGCAACTGA+TGG | 0.609983 | 4_2:+60899181 | Msa0612440:CDS |
| TAGTTAGTAGTGCAATCTCA+AGG | 0.623819 | 4_2:+60900509 | Msa0612440:CDS |
| CAGAACATGGATACTTCTTG+AGG | 0.624436 | 4_2:+60898507 | Msa0612440:CDS |
| GACGGTGAATGGGAAACTTG+TGG | 0.631275 | 4_2:+60899109 | Msa0612440:CDS |
| ATCTGTCATCACCAACACAC+AGG | 0.635325 | 4_2:-60900465 | None:intergenic |
| ACCATGCATAGAAGAATCTG+GGG | 0.671869 | 4_2:+60900666 | Msa0612440:CDS |
| TGTAATGAAACTATATACAG+AGG | 0.682097 | 4_2:+60899171 | Msa0612440:CDS |
| TGGTGATGACAGATCAGATG+AGG | 0.713489 | 4_2:+60900474 | Msa0612440:CDS |
| TGTGAGCAAAGGCTTAGTTG+CGG | 0.713566 | 4_2:+60900393 | Msa0612440:CDS |
| CCTGAGAAGATCCAAAACCA+AGG | 0.716480 | 4_2:-60899258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTGAAAATAATATTTT+AGG | + | chr4_2:60898601-60898620 | Msa0612440:intron | 10.0% |
| !!! | TTATGTGAAAATAATATTTT+AGG | + | chr4_2:60898601-60898620 | Msa0612440:intron | 10.0% |
| !! | TTAAAATTGAAAACAGAAAA+TGG | - | chr4_2:60899553-60899572 | None:intergenic | 15.0% |
| !!! | AACTTTTTAAAATGAAAACA+AGG | - | chr4_2:60899590-60899609 | None:intergenic | 15.0% |
| !!! | TTGTTTTTACCATATAATTT+TGG | + | chr4_2:60900275-60900294 | Msa0612440:intron | 15.0% |
| !! | TTAAAATTGAAAACAGAAAA+TGG | - | chr4_2:60899553-60899572 | None:intergenic | 15.0% |
| !!! | AACTTTTTAAAATGAAAACA+AGG | - | chr4_2:60899590-60899609 | None:intergenic | 15.0% |
| !!! | TTGTTTTTACCATATAATTT+TGG | + | chr4_2:60900275-60900294 | Msa0612440:intron | 15.0% |
| !!! | ACAATGAAAACAACATTTTT+GGG | - | chr4_2:60898422-60898441 | None:intergenic | 20.0% |
| !!! | AACAATGAAAACAACATTTT+TGG | - | chr4_2:60898423-60898442 | None:intergenic | 20.0% |
| !! | TAAATTGAAATTCATGTGTA+TGG | + | chr4_2:60898788-60898807 | Msa0612440:intron | 20.0% |
| !!! | GTTCTCTTCTTTTTATAATT+TGG | + | chr4_2:60899047-60899066 | Msa0612440:intron | 20.0% |
| !!! | AAATCAAATTGCTATTTAAC+AGG | - | chr4_2:60899758-60899777 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTTCTACCA+TGG | + | chr4_2:60900020-60900039 | Msa0612440:intron | 20.0% |
| !!! | TGGAACATTTTCTTATTAAA+TGG | - | chr4_2:60900046-60900065 | None:intergenic | 20.0% |
| !!! | CAAATTTCTGTTCTAATTTT+TGG | + | chr4_2:60900132-60900151 | Msa0612440:intron | 20.0% |
| !! | AATAAATATGCTAGAATCTT+TGG | + | chr4_2:60900624-60900643 | Msa0612440:CDS | 20.0% |
| !!! | ACAATGAAAACAACATTTTT+GGG | - | chr4_2:60898422-60898441 | None:intergenic | 20.0% |
| !!! | AACAATGAAAACAACATTTT+TGG | - | chr4_2:60898423-60898442 | None:intergenic | 20.0% |
| !! | TAAATTGAAATTCATGTGTA+TGG | + | chr4_2:60898788-60898807 | Msa0612440:intron | 20.0% |
| !!! | GTTCTCTTCTTTTTATAATT+TGG | + | chr4_2:60899047-60899066 | Msa0612440:intron | 20.0% |
| !!! | AAATCAAATTGCTATTTAAC+AGG | - | chr4_2:60899758-60899777 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTTCTACCA+TGG | + | chr4_2:60900020-60900039 | Msa0612440:intron | 20.0% |
| !!! | TGGAACATTTTCTTATTAAA+TGG | - | chr4_2:60900046-60900065 | None:intergenic | 20.0% |
| !!! | CAAATTTCTGTTCTAATTTT+TGG | + | chr4_2:60900132-60900151 | Msa0612440:intron | 20.0% |
| !! | AATAAATATGCTAGAATCTT+TGG | + | chr4_2:60900624-60900643 | Msa0612440:CDS | 20.0% |
| !! | CAATGAAAACAACATTTTTG+GGG | - | chr4_2:60898421-60898440 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTCATTGTTAG+TGG | + | chr4_2:60898425-60898444 | Msa0612440:CDS | 25.0% |
| !!! | AAAGTGTTTTAAAGTCCAAT+TGG | + | chr4_2:60898747-60898766 | Msa0612440:intron | 25.0% |
| ! | TATCAAGAAAGTGAACATTT+GGG | - | chr4_2:60899014-60899033 | None:intergenic | 25.0% |
| ! | ATATCAAGAAAGTGAACATT+TGG | - | chr4_2:60899015-60899034 | None:intergenic | 25.0% |
| ! | TTATAAAAAGAAGAGAACAC+AGG | - | chr4_2:60899045-60899064 | None:intergenic | 25.0% |
| !! | TTAACAATTTGAGCATTTTC+AGG | + | chr4_2:60899077-60899096 | Msa0612440:intron | 25.0% |
| ! | TCTGTATATAGTTTCATTAC+AGG | - | chr4_2:60899172-60899191 | None:intergenic | 25.0% |
| ! | TGTAATGAAACTATATACAG+AGG | + | chr4_2:60899171-60899190 | Msa0612440:CDS | 25.0% |
| ! | TAGAGAAATTGTATATACCT+GGG | - | chr4_2:60899371-60899390 | None:intergenic | 25.0% |
| ! | AGCTTAGATAGCAATATTAA+GGG | + | chr4_2:60899515-60899534 | Msa0612440:intron | 25.0% |
| ! | TCAAAGTTAACAATAGGAAA+TGG | - | chr4_2:60899632-60899651 | None:intergenic | 25.0% |
| !! | CTGTTTTCAAAGTTAACAAT+AGG | - | chr4_2:60899638-60899657 | None:intergenic | 25.0% |
| ! | AATATGTACAGAAATCCAAA+AGG | + | chr4_2:60899699-60899718 | Msa0612440:intron | 25.0% |
| !!! | TAGCTTTAGATAACATTGTT+AGG | - | chr4_2:60899928-60899947 | None:intergenic | 25.0% |
| ! | TGTTATATCTTACGTAAAGT+TGG | - | chr4_2:60899981-60900000 | None:intergenic | 25.0% |
| !! | ATTTTCTTATTAAATGGCCA+TGG | - | chr4_2:60900040-60900059 | None:intergenic | 25.0% |
| ! | AAATTAGAACAGAAATTTGC+AGG | - | chr4_2:60900131-60900150 | None:intergenic | 25.0% |
| !!! | AGTTTTTTAGAGAAGCTTTT+TGG | + | chr4_2:60900205-60900224 | Msa0612440:intron | 25.0% |
| ! | GTGTTAAAGCCAAAATTATA+TGG | - | chr4_2:60900287-60900306 | None:intergenic | 25.0% |
| ! | AGATAATACTTTGCTTTACT+TGG | - | chr4_2:60900586-60900605 | None:intergenic | 25.0% |
| !! | AAGTAAAGCAAAGTATTATC+TGG | + | chr4_2:60900585-60900604 | Msa0612440:CDS | 25.0% |
| ! | AAAAAAACATCACCTAAATC+AGG | - | chr4_2:60900726-60900745 | None:intergenic | 25.0% |
| ! | TAATATTCTTTGCGACAATT+GGG | + | chr4_2:60900767-60900786 | Msa0612440:three_prime_UTR | 25.0% |
| ! | GATAAACAGAGAAAATGAAA+AGG | - | chr4_2:60900821-60900840 | None:intergenic | 25.0% |
| !! | CAATGAAAACAACATTTTTG+GGG | - | chr4_2:60898421-60898440 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTCATTGTTAG+TGG | + | chr4_2:60898425-60898444 | Msa0612440:CDS | 25.0% |
| !!! | AAAGTGTTTTAAAGTCCAAT+TGG | + | chr4_2:60898747-60898766 | Msa0612440:intron | 25.0% |
| ! | TATCAAGAAAGTGAACATTT+GGG | - | chr4_2:60899014-60899033 | None:intergenic | 25.0% |
| ! | ATATCAAGAAAGTGAACATT+TGG | - | chr4_2:60899015-60899034 | None:intergenic | 25.0% |
| ! | TTATAAAAAGAAGAGAACAC+AGG | - | chr4_2:60899045-60899064 | None:intergenic | 25.0% |
| !! | TTAACAATTTGAGCATTTTC+AGG | + | chr4_2:60899077-60899096 | Msa0612440:intron | 25.0% |
| ! | TCTGTATATAGTTTCATTAC+AGG | - | chr4_2:60899172-60899191 | None:intergenic | 25.0% |
| ! | TGTAATGAAACTATATACAG+AGG | + | chr4_2:60899171-60899190 | Msa0612440:CDS | 25.0% |
| ! | TAGAGAAATTGTATATACCT+GGG | - | chr4_2:60899371-60899390 | None:intergenic | 25.0% |
| ! | AGCTTAGATAGCAATATTAA+GGG | + | chr4_2:60899515-60899534 | Msa0612440:intron | 25.0% |
| ! | TCAAAGTTAACAATAGGAAA+TGG | - | chr4_2:60899632-60899651 | None:intergenic | 25.0% |
| !! | CTGTTTTCAAAGTTAACAAT+AGG | - | chr4_2:60899638-60899657 | None:intergenic | 25.0% |
| ! | AATATGTACAGAAATCCAAA+AGG | + | chr4_2:60899699-60899718 | Msa0612440:intron | 25.0% |
| !!! | TAGCTTTAGATAACATTGTT+AGG | - | chr4_2:60899928-60899947 | None:intergenic | 25.0% |
| ! | TGTTATATCTTACGTAAAGT+TGG | - | chr4_2:60899981-60900000 | None:intergenic | 25.0% |
| !! | ATTTTCTTATTAAATGGCCA+TGG | - | chr4_2:60900040-60900059 | None:intergenic | 25.0% |
| ! | AAATTAGAACAGAAATTTGC+AGG | - | chr4_2:60900131-60900150 | None:intergenic | 25.0% |
| !!! | AGTTTTTTAGAGAAGCTTTT+TGG | + | chr4_2:60900205-60900224 | Msa0612440:intron | 25.0% |
| ! | GTGTTAAAGCCAAAATTATA+TGG | - | chr4_2:60900287-60900306 | None:intergenic | 25.0% |
| ! | AGATAATACTTTGCTTTACT+TGG | - | chr4_2:60900586-60900605 | None:intergenic | 25.0% |
| !! | AAGTAAAGCAAAGTATTATC+TGG | + | chr4_2:60900585-60900604 | Msa0612440:CDS | 25.0% |
| ! | AAAAAAACATCACCTAAATC+AGG | - | chr4_2:60900726-60900745 | None:intergenic | 25.0% |
| ! | TAATATTCTTTGCGACAATT+GGG | + | chr4_2:60900767-60900786 | Msa0612440:three_prime_UTR | 25.0% |
| ! | GATAAACAGAGAAAATGAAA+AGG | - | chr4_2:60900821-60900840 | None:intergenic | 25.0% |
| ! | TTGTTTTCATTGTTAGTGGA+CGG | + | chr4_2:60898429-60898448 | Msa0612440:CDS | 30.0% |
| TTTACTCCCTGTAAAAAACT+TGG | + | chr4_2:60898476-60898495 | Msa0612440:CDS | 30.0% | |
| !!! | GCAATTCCAAGTTTTTTACA+GGG | - | chr4_2:60898485-60898504 | None:intergenic | 30.0% |
| !!! | AGCAATTCCAAGTTTTTTAC+AGG | - | chr4_2:60898486-60898505 | None:intergenic | 30.0% |
| TAAAGCATACACTATCCAAT+TGG | - | chr4_2:60898765-60898784 | None:intergenic | 30.0% | |
| CAAACAATATATCACTCAAC+AGG | - | chr4_2:60898909-60898928 | None:intergenic | 30.0% | |
| !!! | AGATCATCTAGAAAGTGTTT+TGG | + | chr4_2:60899294-60899313 | Msa0612440:CDS | 30.0% |
| AGAGAAATTGTATATACCTG+GGG | - | chr4_2:60899370-60899389 | None:intergenic | 30.0% | |
| GTAGAGAAATTGTATATACC+TGG | - | chr4_2:60899372-60899391 | None:intergenic | 30.0% | |
| GAGCTTAGATAGCAATATTA+AGG | + | chr4_2:60899514-60899533 | Msa0612440:intron | 30.0% | |
| !! | CGAAGTCATTTTATAGGAAA+TGG | - | chr4_2:60899846-60899865 | None:intergenic | 30.0% |
| !! | GGTTTTCGAAGTCATTTTAT+AGG | - | chr4_2:60899852-60899871 | None:intergenic | 30.0% |
| ! | CAATGTTATCTAAAGCTAGT+AGG | + | chr4_2:60899930-60899949 | Msa0612440:intron | 30.0% |
| GATAAAATAGATCAGGTTCT+TGG | - | chr4_2:60900081-60900100 | None:intergenic | 30.0% | |
| AGACAAGGATAAAATAGATC+AGG | - | chr4_2:60900088-60900107 | None:intergenic | 30.0% | |
| ! | GATCTATTTTATCCTTGTCT+TGG | + | chr4_2:60900088-60900107 | Msa0612440:intron | 30.0% |
| TTTATGTCTAAAGGAACAAC+AGG | - | chr4_2:60900170-60900189 | None:intergenic | 30.0% | |
| ACAGCATCATTTATGTCTAA+AGG | - | chr4_2:60900179-60900198 | None:intergenic | 30.0% | |
| ! | TGAATCATCATTTTCCCAAA+GGG | - | chr4_2:60900349-60900368 | None:intergenic | 30.0% |
| ! | ATGAATCATCATTTTCCCAA+AGG | - | chr4_2:60900350-60900369 | None:intergenic | 30.0% |
| GTAATATTCTTTGCGACAAT+TGG | + | chr4_2:60900766-60900785 | Msa0612440:three_prime_UTR | 30.0% | |
| AATATTCTTTGCGACAATTG+GGG | + | chr4_2:60900768-60900787 | Msa0612440:three_prime_UTR | 30.0% | |
| ! | TTGTTTTCATTGTTAGTGGA+CGG | + | chr4_2:60898429-60898448 | Msa0612440:CDS | 30.0% |
| TTTACTCCCTGTAAAAAACT+TGG | + | chr4_2:60898476-60898495 | Msa0612440:CDS | 30.0% | |
| !!! | GCAATTCCAAGTTTTTTACA+GGG | - | chr4_2:60898485-60898504 | None:intergenic | 30.0% |
| !!! | AGCAATTCCAAGTTTTTTAC+AGG | - | chr4_2:60898486-60898505 | None:intergenic | 30.0% |
| TAAAGCATACACTATCCAAT+TGG | - | chr4_2:60898765-60898784 | None:intergenic | 30.0% | |
| CAAACAATATATCACTCAAC+AGG | - | chr4_2:60898909-60898928 | None:intergenic | 30.0% | |
| !!! | AGATCATCTAGAAAGTGTTT+TGG | + | chr4_2:60899294-60899313 | Msa0612440:CDS | 30.0% |
| AGAGAAATTGTATATACCTG+GGG | - | chr4_2:60899370-60899389 | None:intergenic | 30.0% | |
| GTAGAGAAATTGTATATACC+TGG | - | chr4_2:60899372-60899391 | None:intergenic | 30.0% | |
| GAGCTTAGATAGCAATATTA+AGG | + | chr4_2:60899514-60899533 | Msa0612440:intron | 30.0% | |
| !! | CGAAGTCATTTTATAGGAAA+TGG | - | chr4_2:60899846-60899865 | None:intergenic | 30.0% |
| !! | GGTTTTCGAAGTCATTTTAT+AGG | - | chr4_2:60899852-60899871 | None:intergenic | 30.0% |
| ! | CAATGTTATCTAAAGCTAGT+AGG | + | chr4_2:60899930-60899949 | Msa0612440:intron | 30.0% |
| GATAAAATAGATCAGGTTCT+TGG | - | chr4_2:60900081-60900100 | None:intergenic | 30.0% | |
| AGACAAGGATAAAATAGATC+AGG | - | chr4_2:60900088-60900107 | None:intergenic | 30.0% | |
| ! | GATCTATTTTATCCTTGTCT+TGG | + | chr4_2:60900088-60900107 | Msa0612440:intron | 30.0% |
| TTTATGTCTAAAGGAACAAC+AGG | - | chr4_2:60900170-60900189 | None:intergenic | 30.0% | |
| ACAGCATCATTTATGTCTAA+AGG | - | chr4_2:60900179-60900198 | None:intergenic | 30.0% | |
| ! | TGAATCATCATTTTCCCAAA+GGG | - | chr4_2:60900349-60900368 | None:intergenic | 30.0% |
| ! | ATGAATCATCATTTTCCCAA+AGG | - | chr4_2:60900350-60900369 | None:intergenic | 30.0% |
| GTAATATTCTTTGCGACAAT+TGG | + | chr4_2:60900766-60900785 | Msa0612440:three_prime_UTR | 30.0% | |
| AATATTCTTTGCGACAATTG+GGG | + | chr4_2:60900768-60900787 | Msa0612440:three_prime_UTR | 30.0% | |
| !! | TGTTTTCATTGTTAGTGGAC+GGG | + | chr4_2:60898430-60898449 | Msa0612440:CDS | 35.0% |
| TACAGCACAAGTTCATAGTA+TGG | - | chr4_2:60898632-60898651 | None:intergenic | 35.0% | |
| CTGCATTCAGACAAGAAAAA+TGG | - | chr4_2:60898668-60898687 | None:intergenic | 35.0% | |
| AATAACTTCCTTTCATCCCT+AGG | + | chr4_2:60898696-60898715 | Msa0612440:intron | 35.0% | |
| TGAGAACATCAGTTGTCTTA+TGG | + | chr4_2:60898862-60898881 | Msa0612440:intron | 35.0% | |
| !! | ACAATTTGAGCATTTTCAGG+TGG | + | chr4_2:60899080-60899099 | Msa0612440:intron | 35.0% |
| ! | TGTGGTAATTGCTCTGATTT+TGG | + | chr4_2:60899127-60899146 | Msa0612440:CDS | 35.0% |
| ! | GTAATTGCTCTGATTTTGGA+TGG | + | chr4_2:60899131-60899150 | Msa0612440:CDS | 35.0% |
| ACTTTCCTTTCGTTCAATAC+TGG | - | chr4_2:60899209-60899228 | None:intergenic | 35.0% | |
| !! | GTCCTTTCTAAAATGCATTC+TGG | + | chr4_2:60899457-60899476 | Msa0612440:intron | 35.0% |
| !! | CTCCAGAATGCATTTTAGAA+AGG | - | chr4_2:60899462-60899481 | None:intergenic | 35.0% |
| !! | CTAAAATGCATTCTGGAGTT+TGG | + | chr4_2:60899464-60899483 | Msa0612440:intron | 35.0% |
| ! | AGCAATATTAAGGGCATGAT+TGG | + | chr4_2:60899524-60899543 | Msa0612440:intron | 35.0% |
| AAGCCTGTGATAACAGAAAA+TGG | + | chr4_2:60899668-60899687 | Msa0612440:intron | 35.0% | |
| AGCCTGTGATAACAGAAAAT+GGG | + | chr4_2:60899669-60899688 | Msa0612440:intron | 35.0% | |
| ! | TTCCCATTTTCTGTTATCAC+AGG | - | chr4_2:60899674-60899693 | None:intergenic | 35.0% |
| ! | AACTTGCTTTCACCATGTTT+CGG | - | chr4_2:60899874-60899893 | None:intergenic | 35.0% |
| GAAAATGTTCCATCTAACCA+TGG | + | chr4_2:60900054-60900073 | Msa0612440:intron | 35.0% | |
| AATGTCAGATATCCAAGACA+AGG | - | chr4_2:60900103-60900122 | None:intergenic | 35.0% | |
| GTAAAAACAAACTGCTATGC+TGG | - | chr4_2:60900265-60900284 | None:intergenic | 35.0% | |
| ! | GAATCATCATTTTCCCAAAG+GGG | - | chr4_2:60900348-60900367 | None:intergenic | 35.0% |
| TCTTATACCATTTGCATTGC+AGG | + | chr4_2:60900369-60900388 | Msa0612440:intron | 35.0% | |
| AATGACTGAAAGTGACAAAC+AGG | + | chr4_2:60900432-60900451 | Msa0612440:CDS | 35.0% | |
| TAGTTAGTAGTGCAATCTCA+AGG | + | chr4_2:60900509-60900528 | Msa0612440:CDS | 35.0% | |
| !! | TGTTTTCATTGTTAGTGGAC+GGG | + | chr4_2:60898430-60898449 | Msa0612440:CDS | 35.0% |
| TACAGCACAAGTTCATAGTA+TGG | - | chr4_2:60898632-60898651 | None:intergenic | 35.0% | |
| CTGCATTCAGACAAGAAAAA+TGG | - | chr4_2:60898668-60898687 | None:intergenic | 35.0% | |
| AATAACTTCCTTTCATCCCT+AGG | + | chr4_2:60898696-60898715 | Msa0612440:intron | 35.0% | |
| TGAGAACATCAGTTGTCTTA+TGG | + | chr4_2:60898862-60898881 | Msa0612440:intron | 35.0% | |
| !! | ACAATTTGAGCATTTTCAGG+TGG | + | chr4_2:60899080-60899099 | Msa0612440:intron | 35.0% |
| ! | TGTGGTAATTGCTCTGATTT+TGG | + | chr4_2:60899127-60899146 | Msa0612440:CDS | 35.0% |
| ! | GTAATTGCTCTGATTTTGGA+TGG | + | chr4_2:60899131-60899150 | Msa0612440:CDS | 35.0% |
| ACTTTCCTTTCGTTCAATAC+TGG | - | chr4_2:60899209-60899228 | None:intergenic | 35.0% | |
| !! | GTCCTTTCTAAAATGCATTC+TGG | + | chr4_2:60899457-60899476 | Msa0612440:intron | 35.0% |
| !! | CTCCAGAATGCATTTTAGAA+AGG | - | chr4_2:60899462-60899481 | None:intergenic | 35.0% |
| !! | CTAAAATGCATTCTGGAGTT+TGG | + | chr4_2:60899464-60899483 | Msa0612440:intron | 35.0% |
| ! | AGCAATATTAAGGGCATGAT+TGG | + | chr4_2:60899524-60899543 | Msa0612440:intron | 35.0% |
| AAGCCTGTGATAACAGAAAA+TGG | + | chr4_2:60899668-60899687 | Msa0612440:intron | 35.0% | |
| AGCCTGTGATAACAGAAAAT+GGG | + | chr4_2:60899669-60899688 | Msa0612440:intron | 35.0% | |
| ! | TTCCCATTTTCTGTTATCAC+AGG | - | chr4_2:60899674-60899693 | None:intergenic | 35.0% |
| ! | AACTTGCTTTCACCATGTTT+CGG | - | chr4_2:60899874-60899893 | None:intergenic | 35.0% |
| GAAAATGTTCCATCTAACCA+TGG | + | chr4_2:60900054-60900073 | Msa0612440:intron | 35.0% | |
| AATGTCAGATATCCAAGACA+AGG | - | chr4_2:60900103-60900122 | None:intergenic | 35.0% | |
| GTAAAAACAAACTGCTATGC+TGG | - | chr4_2:60900265-60900284 | None:intergenic | 35.0% | |
| ! | GAATCATCATTTTCCCAAAG+GGG | - | chr4_2:60900348-60900367 | None:intergenic | 35.0% |
| TCTTATACCATTTGCATTGC+AGG | + | chr4_2:60900369-60900388 | Msa0612440:intron | 35.0% | |
| AATGACTGAAAGTGACAAAC+AGG | + | chr4_2:60900432-60900451 | Msa0612440:CDS | 35.0% | |
| TAGTTAGTAGTGCAATCTCA+AGG | + | chr4_2:60900509-60900528 | Msa0612440:CDS | 35.0% | |
| !! | GTTTTCATTGTTAGTGGACG+GGG | + | chr4_2:60898431-60898450 | Msa0612440:CDS | 40.0% |
| GTAGGGATAGCTTAAGTGAA+TGG | + | chr4_2:60898453-60898472 | Msa0612440:CDS | 40.0% | |
| CAGAACATGGATACTTCTTG+AGG | + | chr4_2:60898507-60898526 | Msa0612440:CDS | 40.0% | |
| ATAGCTCTTGTTCAGACCTA+GGG | - | chr4_2:60898715-60898734 | None:intergenic | 40.0% | |
| AATAGCTCTTGTTCAGACCT+AGG | - | chr4_2:60898716-60898735 | None:intergenic | 40.0% | |
| TCTGAACAAGAGCTATTACG+TGG | + | chr4_2:60898719-60898738 | Msa0612440:intron | 40.0% | |
| CTGAACAAGAGCTATTACGT+GGG | + | chr4_2:60898720-60898739 | Msa0612440:intron | 40.0% | |
| TGAACAAGAGCTATTACGTG+GGG | + | chr4_2:60898721-60898740 | Msa0612440:intron | 40.0% | |
| ACAACTGATGTTCTCAACTC+TGG | - | chr4_2:60898858-60898877 | None:intergenic | 40.0% | |
| TTGATCACTTCCTCCATGTA+TGG | + | chr4_2:60898941-60898960 | Msa0612440:intron | 40.0% | |
| GATCAATGCAGATCCATACA+TGG | - | chr4_2:60898957-60898976 | None:intergenic | 40.0% | |
| CTATATACAGAGGCAACTGA+TGG | + | chr4_2:60899181-60899200 | Msa0612440:CDS | 40.0% | |
| ! | TGGTTCCAGTATTGAACGAA+AGG | + | chr4_2:60899201-60899220 | Msa0612440:CDS | 40.0% |
| !! | TGAACGAAAGGAAAGTGCTT+TGG | + | chr4_2:60899213-60899232 | Msa0612440:CDS | 40.0% |
| !! | GAAAGGAAAGTGCTTTGGTT+TGG | + | chr4_2:60899218-60899237 | Msa0612440:CDS | 40.0% |
| !! | TGCTTTGGTTTGGCAATACA+GGG | + | chr4_2:60899228-60899247 | Msa0612440:CDS | 40.0% |
| AGAAGATCCAAAACCAAGGT+CGG | - | chr4_2:60899257-60899276 | None:intergenic | 40.0% | |
| ! | TTTTGGATCTTCTCAGGCTA+AGG | + | chr4_2:60899264-60899283 | Msa0612440:CDS | 40.0% |
| GATAAACTGACCACTCTTTG+CGG | - | chr4_2:60899335-60899354 | None:intergenic | 40.0% | |
| AGAAATCCAAAAGGTCCCTA+GGG | + | chr4_2:60899708-60899727 | Msa0612440:intron | 40.0% | |
| ACTTGCTTTCACCATGTTTC+GGG | - | chr4_2:60899873-60899892 | None:intergenic | 40.0% | |
| GAAACATGGTGAAAGCAAGT+TGG | + | chr4_2:60899873-60899892 | Msa0612440:intron | 40.0% | |
| CAACAAATTCCCGACAACTA+AGG | - | chr4_2:60899957-60899976 | None:intergenic | 40.0% | |
| ATGTCTAAAGGAACAACAGG+AGG | - | chr4_2:60900167-60900186 | None:intergenic | 40.0% | |
| TTATTGTGCTACAACCCCTT+TGG | + | chr4_2:60900331-60900350 | Msa0612440:intron | 40.0% | |
| TATTGTGCTACAACCCCTTT+GGG | + | chr4_2:60900332-60900351 | Msa0612440:intron | 40.0% | |
| !! | AGCAAATACAGAAGCATTGG+AGG | - | chr4_2:60900545-60900564 | None:intergenic | 40.0% |
| ! | GCAAGCAAATACAGAAGCAT+TGG | - | chr4_2:60900548-60900567 | None:intergenic | 40.0% |
| TGCTTCTGTATTTGCTTGCA+CGG | + | chr4_2:60900549-60900568 | Msa0612440:CDS | 40.0% | |
| TCACCATGCATAGAAGAATC+TGG | + | chr4_2:60900664-60900683 | Msa0612440:CDS | 40.0% | |
| CACCATGCATAGAAGAATCT+GGG | + | chr4_2:60900665-60900684 | Msa0612440:CDS | 40.0% | |
| ACCATGCATAGAAGAATCTG+GGG | + | chr4_2:60900666-60900685 | Msa0612440:CDS | 40.0% | |
| CAGTCAAGTTTGGATTCAAG+AGG | - | chr4_2:60900695-60900714 | None:intergenic | 40.0% | |
| CTTGAATCCAAACTTGACTG+AGG | + | chr4_2:60900695-60900714 | Msa0612440:exon | 40.0% | |
| ACTGAGGTTTCTCCTGATTT+AGG | + | chr4_2:60900711-60900730 | Msa0612440:three_prime_UTR | 40.0% | |
| !! | GTTTTCATTGTTAGTGGACG+GGG | + | chr4_2:60898431-60898450 | Msa0612440:CDS | 40.0% |
| GTAGGGATAGCTTAAGTGAA+TGG | + | chr4_2:60898453-60898472 | Msa0612440:CDS | 40.0% | |
| CAGAACATGGATACTTCTTG+AGG | + | chr4_2:60898507-60898526 | Msa0612440:CDS | 40.0% | |
| ATAGCTCTTGTTCAGACCTA+GGG | - | chr4_2:60898715-60898734 | None:intergenic | 40.0% | |
| AATAGCTCTTGTTCAGACCT+AGG | - | chr4_2:60898716-60898735 | None:intergenic | 40.0% | |
| TCTGAACAAGAGCTATTACG+TGG | + | chr4_2:60898719-60898738 | Msa0612440:intron | 40.0% | |
| CTGAACAAGAGCTATTACGT+GGG | + | chr4_2:60898720-60898739 | Msa0612440:intron | 40.0% | |
| TGAACAAGAGCTATTACGTG+GGG | + | chr4_2:60898721-60898740 | Msa0612440:intron | 40.0% | |
| ACAACTGATGTTCTCAACTC+TGG | - | chr4_2:60898858-60898877 | None:intergenic | 40.0% | |
| TTGATCACTTCCTCCATGTA+TGG | + | chr4_2:60898941-60898960 | Msa0612440:intron | 40.0% | |
| GATCAATGCAGATCCATACA+TGG | - | chr4_2:60898957-60898976 | None:intergenic | 40.0% | |
| CTATATACAGAGGCAACTGA+TGG | + | chr4_2:60899181-60899200 | Msa0612440:CDS | 40.0% | |
| ! | TGGTTCCAGTATTGAACGAA+AGG | + | chr4_2:60899201-60899220 | Msa0612440:CDS | 40.0% |
| !! | TGAACGAAAGGAAAGTGCTT+TGG | + | chr4_2:60899213-60899232 | Msa0612440:CDS | 40.0% |
| !! | GAAAGGAAAGTGCTTTGGTT+TGG | + | chr4_2:60899218-60899237 | Msa0612440:CDS | 40.0% |
| !! | TGCTTTGGTTTGGCAATACA+GGG | + | chr4_2:60899228-60899247 | Msa0612440:CDS | 40.0% |
| AGAAGATCCAAAACCAAGGT+CGG | - | chr4_2:60899257-60899276 | None:intergenic | 40.0% | |
| ! | TTTTGGATCTTCTCAGGCTA+AGG | + | chr4_2:60899264-60899283 | Msa0612440:CDS | 40.0% |
| GATAAACTGACCACTCTTTG+CGG | - | chr4_2:60899335-60899354 | None:intergenic | 40.0% | |
| AGAAATCCAAAAGGTCCCTA+GGG | + | chr4_2:60899708-60899727 | Msa0612440:intron | 40.0% | |
| ACTTGCTTTCACCATGTTTC+GGG | - | chr4_2:60899873-60899892 | None:intergenic | 40.0% | |
| GAAACATGGTGAAAGCAAGT+TGG | + | chr4_2:60899873-60899892 | Msa0612440:intron | 40.0% | |
| CAACAAATTCCCGACAACTA+AGG | - | chr4_2:60899957-60899976 | None:intergenic | 40.0% | |
| ATGTCTAAAGGAACAACAGG+AGG | - | chr4_2:60900167-60900186 | None:intergenic | 40.0% | |
| TTATTGTGCTACAACCCCTT+TGG | + | chr4_2:60900331-60900350 | Msa0612440:intron | 40.0% | |
| TATTGTGCTACAACCCCTTT+GGG | + | chr4_2:60900332-60900351 | Msa0612440:intron | 40.0% | |
| !! | AGCAAATACAGAAGCATTGG+AGG | - | chr4_2:60900545-60900564 | None:intergenic | 40.0% |
| ! | GCAAGCAAATACAGAAGCAT+TGG | - | chr4_2:60900548-60900567 | None:intergenic | 40.0% |
| TGCTTCTGTATTTGCTTGCA+CGG | + | chr4_2:60900549-60900568 | Msa0612440:CDS | 40.0% | |
| TCACCATGCATAGAAGAATC+TGG | + | chr4_2:60900664-60900683 | Msa0612440:CDS | 40.0% | |
| CACCATGCATAGAAGAATCT+GGG | + | chr4_2:60900665-60900684 | Msa0612440:CDS | 40.0% | |
| ACCATGCATAGAAGAATCTG+GGG | + | chr4_2:60900666-60900685 | Msa0612440:CDS | 40.0% | |
| CAGTCAAGTTTGGATTCAAG+AGG | - | chr4_2:60900695-60900714 | None:intergenic | 40.0% | |
| CTTGAATCCAAACTTGACTG+AGG | + | chr4_2:60900695-60900714 | Msa0612440:exon | 40.0% | |
| ACTGAGGTTTCTCCTGATTT+AGG | + | chr4_2:60900711-60900730 | Msa0612440:three_prime_UTR | 40.0% | |
| CTTGGAATTGCTGCAGAACA+TGG | + | chr4_2:60898494-60898513 | Msa0612440:CDS | 45.0% | |
| TGTTCAGACCTAGGGATGAA+AGG | - | chr4_2:60898707-60898726 | None:intergenic | 45.0% | |
| CAATGCAGATCCATACATGG+AGG | - | chr4_2:60898954-60898973 | None:intergenic | 45.0% | |
| !!! | ATTTTCAGGTGGTCCCAAGA+CGG | + | chr4_2:60899091-60899110 | Msa0612440:intron | 45.0% |
| AGTTTCCCATTCACCGTCTT+GGG | - | chr4_2:60899107-60899126 | None:intergenic | 45.0% | |
| AAGTTTCCCATTCACCGTCT+TGG | - | chr4_2:60899108-60899127 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGTTTGGCAATAC+AGG | + | chr4_2:60899227-60899246 | Msa0612440:CDS | 45.0% |
| CCTGAGAAGATCCAAAACCA+AGG | - | chr4_2:60899261-60899280 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTGGATCTTCTC+AGG | + | chr4_2:60899258-60899277 | Msa0612440:CDS | 45.0% |
| CAGAAATCCAAAAGGTCCCT+AGG | + | chr4_2:60899707-60899726 | Msa0612440:intron | 45.0% | |
| CTGAAACCAATCAGACCCTA+GGG | - | chr4_2:60899726-60899745 | None:intergenic | 45.0% | |
| ! | TCTGAAACCAATCAGACCCT+AGG | - | chr4_2:60899727-60899746 | None:intergenic | 45.0% |
| GACTTCGAAAACCCGAAACA+TGG | + | chr4_2:60899859-60899878 | Msa0612440:intron | 45.0% | |
| GCTAGTAGGTCCTTAGTTGT+CGG | + | chr4_2:60899944-60899963 | Msa0612440:intron | 45.0% | |
| CTAGTAGGTCCTTAGTTGTC+GGG | + | chr4_2:60899945-60899964 | Msa0612440:intron | 45.0% | |
| GTTCTTGGTCCATGGTTAGA+TGG | - | chr4_2:60900066-60900085 | None:intergenic | 45.0% | |
| TAGATCAGGTTCTTGGTCCA+TGG | - | chr4_2:60900074-60900093 | None:intergenic | 45.0% | |
| CTCACATCCTGCAATGCAAA+TGG | - | chr4_2:60900379-60900398 | None:intergenic | 45.0% | |
| TGTGAGCAAAGGCTTAGTTG+CGG | + | chr4_2:60900393-60900412 | Msa0612440:CDS | 45.0% | |
| ATCTGTCATCACCAACACAC+AGG | - | chr4_2:60900468-60900487 | None:intergenic | 45.0% | |
| ! | TGGTGATGACAGATCAGATG+AGG | + | chr4_2:60900474-60900493 | Msa0612440:CDS | 45.0% |
| TCTGTATTTGCTTGCACGGT+TGG | + | chr4_2:60900553-60900572 | Msa0612440:CDS | 45.0% | |
| TCCCCAGATTCTTCTATGCA+TGG | - | chr4_2:60900670-60900689 | None:intergenic | 45.0% | |
| GGAGAAACCTCAGTCAAGTT+TGG | - | chr4_2:60900705-60900724 | None:intergenic | 45.0% | |
| CTTGGAATTGCTGCAGAACA+TGG | + | chr4_2:60898494-60898513 | Msa0612440:CDS | 45.0% | |
| TGTTCAGACCTAGGGATGAA+AGG | - | chr4_2:60898707-60898726 | None:intergenic | 45.0% | |
| CAATGCAGATCCATACATGG+AGG | - | chr4_2:60898954-60898973 | None:intergenic | 45.0% | |
| !!! | ATTTTCAGGTGGTCCCAAGA+CGG | + | chr4_2:60899091-60899110 | Msa0612440:intron | 45.0% |
| AGTTTCCCATTCACCGTCTT+GGG | - | chr4_2:60899107-60899126 | None:intergenic | 45.0% | |
| AAGTTTCCCATTCACCGTCT+TGG | - | chr4_2:60899108-60899127 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGTTTGGCAATAC+AGG | + | chr4_2:60899227-60899246 | Msa0612440:CDS | 45.0% |
| CCTGAGAAGATCCAAAACCA+AGG | - | chr4_2:60899261-60899280 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTGGATCTTCTC+AGG | + | chr4_2:60899258-60899277 | Msa0612440:CDS | 45.0% |
| CAGAAATCCAAAAGGTCCCT+AGG | + | chr4_2:60899707-60899726 | Msa0612440:intron | 45.0% | |
| CTGAAACCAATCAGACCCTA+GGG | - | chr4_2:60899726-60899745 | None:intergenic | 45.0% | |
| ! | TCTGAAACCAATCAGACCCT+AGG | - | chr4_2:60899727-60899746 | None:intergenic | 45.0% |
| GACTTCGAAAACCCGAAACA+TGG | + | chr4_2:60899859-60899878 | Msa0612440:intron | 45.0% | |
| GCTAGTAGGTCCTTAGTTGT+CGG | + | chr4_2:60899944-60899963 | Msa0612440:intron | 45.0% | |
| CTAGTAGGTCCTTAGTTGTC+GGG | + | chr4_2:60899945-60899964 | Msa0612440:intron | 45.0% | |
| GTTCTTGGTCCATGGTTAGA+TGG | - | chr4_2:60900066-60900085 | None:intergenic | 45.0% | |
| TAGATCAGGTTCTTGGTCCA+TGG | - | chr4_2:60900074-60900093 | None:intergenic | 45.0% | |
| CTCACATCCTGCAATGCAAA+TGG | - | chr4_2:60900379-60900398 | None:intergenic | 45.0% | |
| TGTGAGCAAAGGCTTAGTTG+CGG | + | chr4_2:60900393-60900412 | Msa0612440:CDS | 45.0% | |
| ATCTGTCATCACCAACACAC+AGG | - | chr4_2:60900468-60900487 | None:intergenic | 45.0% | |
| ! | TGGTGATGACAGATCAGATG+AGG | + | chr4_2:60900474-60900493 | Msa0612440:CDS | 45.0% |
| TCTGTATTTGCTTGCACGGT+TGG | + | chr4_2:60900553-60900572 | Msa0612440:CDS | 45.0% | |
| TCCCCAGATTCTTCTATGCA+TGG | - | chr4_2:60900670-60900689 | None:intergenic | 45.0% | |
| GGAGAAACCTCAGTCAAGTT+TGG | - | chr4_2:60900705-60900724 | None:intergenic | 45.0% | |
| ! | TCATTGTTAGTGGACGGGGT+AGG | + | chr4_2:60898435-60898454 | Msa0612440:CDS | 50.0% |
| ! | CATTGTTAGTGGACGGGGTA+GGG | + | chr4_2:60898436-60898455 | Msa0612440:CDS | 50.0% |
| TGTCTTATGGCAGTCATGCC+AGG | + | chr4_2:60898875-60898894 | Msa0612440:intron | 50.0% | |
| GTCTTATGGCAGTCATGCCA+GGG | + | chr4_2:60898876-60898895 | Msa0612440:intron | 50.0% | |
| ACTCAACAGGAACTTCTCCC+TGG | - | chr4_2:60898896-60898915 | None:intergenic | 50.0% | |
| GACGGTGAATGGGAAACTTG+TGG | + | chr4_2:60899109-60899128 | Msa0612440:CDS | 50.0% | |
| TATCGTTGAAGTGAAGCCCC+AGG | + | chr4_2:60899351-60899370 | Msa0612440:CDS | 50.0% | |
| ! | ATCAGACCCTAGGGACCTTT+TGG | - | chr4_2:60899717-60899736 | None:intergenic | 50.0% |
| AAAGGTCCCTAGGGTCTGAT+TGG | + | chr4_2:60899717-60899736 | Msa0612440:intron | 50.0% | |
| GCATTGCAGGATGTGAGCAA+AGG | + | chr4_2:60900382-60900401 | Msa0612440:intron | 50.0% | |
| ! | GCTGACTTTGTCCTGTGTGT+TGG | + | chr4_2:60900454-60900473 | Msa0612440:CDS | 50.0% |
| ! | TCATTGTTAGTGGACGGGGT+AGG | + | chr4_2:60898435-60898454 | Msa0612440:CDS | 50.0% |
| ! | CATTGTTAGTGGACGGGGTA+GGG | + | chr4_2:60898436-60898455 | Msa0612440:CDS | 50.0% |
| TGTCTTATGGCAGTCATGCC+AGG | + | chr4_2:60898875-60898894 | Msa0612440:intron | 50.0% | |
| GTCTTATGGCAGTCATGCCA+GGG | + | chr4_2:60898876-60898895 | Msa0612440:intron | 50.0% | |
| ACTCAACAGGAACTTCTCCC+TGG | - | chr4_2:60898896-60898915 | None:intergenic | 50.0% | |
| GACGGTGAATGGGAAACTTG+TGG | + | chr4_2:60899109-60899128 | Msa0612440:CDS | 50.0% | |
| TATCGTTGAAGTGAAGCCCC+AGG | + | chr4_2:60899351-60899370 | Msa0612440:CDS | 50.0% | |
| ! | ATCAGACCCTAGGGACCTTT+TGG | - | chr4_2:60899717-60899736 | None:intergenic | 50.0% |
| AAAGGTCCCTAGGGTCTGAT+TGG | + | chr4_2:60899717-60899736 | Msa0612440:intron | 50.0% | |
| GCATTGCAGGATGTGAGCAA+AGG | + | chr4_2:60900382-60900401 | Msa0612440:intron | 50.0% | |
| ! | GCTGACTTTGTCCTGTGTGT+TGG | + | chr4_2:60900454-60900473 | Msa0612440:CDS | 50.0% |
| GTGGTCCCAAGACGGTGAAT+GGG | + | chr4_2:60899099-60899118 | Msa0612440:CDS | 55.0% | |
| CAATACAGGGATGCCGACCT+TGG | + | chr4_2:60899241-60899260 | Msa0612440:CDS | 55.0% | |
| ! | AGGGATGCCGACCTTGGTTT+TGG | + | chr4_2:60899247-60899266 | Msa0612440:CDS | 55.0% |
| CTTTGCGGCAACAGGCTCAT+TGG | - | chr4_2:60899320-60899339 | None:intergenic | 55.0% | |
| TGACCACTCTTTGCGGCAAC+AGG | - | chr4_2:60899328-60899347 | None:intergenic | 55.0% | |
| GTGGTCCCAAGACGGTGAAT+GGG | + | chr4_2:60899099-60899118 | Msa0612440:CDS | 55.0% | |
| CAATACAGGGATGCCGACCT+TGG | + | chr4_2:60899241-60899260 | Msa0612440:CDS | 55.0% | |
| ! | AGGGATGCCGACCTTGGTTT+TGG | + | chr4_2:60899247-60899266 | Msa0612440:CDS | 55.0% |
| CTTTGCGGCAACAGGCTCAT+TGG | - | chr4_2:60899320-60899339 | None:intergenic | 55.0% | |
| TGACCACTCTTTGCGGCAAC+AGG | - | chr4_2:60899328-60899347 | None:intergenic | 55.0% | |
| GGTGGTCCCAAGACGGTGAA+TGG | + | chr4_2:60899098-60899117 | Msa0612440:intron | 60.0% | |
| GAGCCTGTTGCCGCAAAGAG+TGG | + | chr4_2:60899322-60899341 | Msa0612440:CDS | 60.0% | |
| GGTGGTCCCAAGACGGTGAA+TGG | + | chr4_2:60899098-60899117 | Msa0612440:intron | 60.0% | |
| GAGCCTGTTGCCGCAAAGAG+TGG | + | chr4_2:60899322-60899341 | Msa0612440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60898410 | 60900847 | 60898410 | ID=Msa0612440;Name=Msa0612440 |
| chr4_2 | mRNA | 60898410 | 60900847 | 60898410 | ID=Msa0612440-mRNA-1;Parent=Msa0612440;Name=Msa0612440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|148|233 |
| chr4_2 | exon | 60898410 | 60898528 | 60898410 | ID=Msa0612440-mRNA-1:exon:16445;Parent=Msa0612440-mRNA-1 |
| chr4_2 | exon | 60899099 | 60899372 | 60899099 | ID=Msa0612440-mRNA-1:exon:16446;Parent=Msa0612440-mRNA-1 |
| chr4_2 | exon | 60900391 | 60900847 | 60900391 | ID=Msa0612440-mRNA-1:exon:16447;Parent=Msa0612440-mRNA-1 |
| chr4_2 | CDS | 60898410 | 60898528 | 60898410 | ID=Msa0612440-mRNA-1:cds;Parent=Msa0612440-mRNA-1 |
| chr4_2 | CDS | 60899099 | 60899372 | 60899099 | ID=Msa0612440-mRNA-1:cds;Parent=Msa0612440-mRNA-1 |
| chr4_2 | CDS | 60900391 | 60900699 | 60900391 | ID=Msa0612440-mRNA-1:cds;Parent=Msa0612440-mRNA-1 |
| chr4_2 | three_prime_UTR | 60900700 | 60900847 | 60900700 | ID=Msa0612440-mRNA-1:three_prime_utr;Parent=Msa0612440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
