Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555410 | XP_003607607.1 | 99.071 | 861 | 8 | 0 | 1 | 861 | 1 | 861 | 0.0 | 1773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555410 | sp|Q9LMI0|TPS7_ARATH | 78.026 | 851 | 176 | 3 | 1 | 851 | 1 | 840 | 0.0 | 1381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555410 | G7JCN5 | 99.071 | 861 | 8 | 0 | 1 | 861 | 1 | 861 | 0.0 | 1773 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0555410 | Msa0609070 | 0.896376 | 3.916239e-76 | -8.615850e-47 |
| Msa0555410 | Msa0612440 | 0.880668 | 4.542173e-70 | -8.615850e-47 |
| Msa0555410 | Msa0649460 | 0.958168 | 4.580535e-116 | -8.615850e-47 |
| Msa0555410 | Msa0682590 | 0.898757 | 3.878563e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555410 | MtrunA17_Chr4g0041381 | 99.071 | 861 | 8 | 0 | 1 | 861 | 1 | 861 | 0.0 | 1773 |
| Msa0555410 | MtrunA17_Chr1g0209251 | 65.299 | 853 | 285 | 3 | 1 | 851 | 1 | 844 | 0.0 | 1210 |
| Msa0555410 | MtrunA17_Chr1g0161531 | 64.610 | 859 | 285 | 9 | 1 | 849 | 1 | 850 | 0.0 | 1163 |
| Msa0555410 | MtrunA17_Chr8g0391971 | 63.944 | 857 | 292 | 7 | 1 | 849 | 1 | 848 | 0.0 | 1162 |
| Msa0555410 | MtrunA17_Chr8g0364961 | 64.277 | 823 | 286 | 2 | 32 | 852 | 25 | 841 | 0.0 | 1137 |
| Msa0555410 | MtrunA17_Chr4g0073041 | 58.756 | 788 | 313 | 6 | 67 | 848 | 57 | 838 | 0.0 | 977 |
| Msa0555410 | MtrunA17_Chr3g0117891 | 54.860 | 751 | 336 | 2 | 90 | 838 | 3 | 752 | 0.0 | 853 |
| Msa0555410 | MtrunA17_Chr3g0107401 | 48.744 | 597 | 278 | 3 | 68 | 664 | 1 | 569 | 0.0 | 569 |
| Msa0555410 | MtrunA17_Chr2g0314621 | 33.910 | 752 | 438 | 19 | 67 | 799 | 124 | 835 | 3.05e-141 | 442 |
| Msa0555410 | MtrunA17_Chr8g0359371 | 33.822 | 751 | 438 | 19 | 67 | 797 | 85 | 796 | 1.42e-134 | 424 |
| Msa0555410 | MtrunA17_Chr8g0380051 | 35.294 | 357 | 193 | 11 | 43 | 387 | 53 | 383 | 2.62e-66 | 228 |
| Msa0555410 | MtrunA17_Chr8g0380061 | 30.282 | 426 | 250 | 12 | 391 | 799 | 2 | 397 | 1.86e-52 | 191 |
| Msa0555410 | MtrunA17_Chr3g0107421 | 47.429 | 175 | 92 | 0 | 259 | 433 | 1 | 175 | 7.56e-49 | 170 |
| Msa0555410 | MtrunA17_Chr3g0107411 | 47.712 | 153 | 78 | 1 | 450 | 600 | 1 | 153 | 2.10e-42 | 152 |
| Msa0555410 | MtrunA17_Chr3g0116901 | 51.880 | 133 | 63 | 1 | 67 | 199 | 39 | 170 | 6.66e-42 | 150 |
| Msa0555410 | MtrunA17_Chr3g0107431 | 44.737 | 114 | 48 | 2 | 67 | 180 | 11 | 109 | 2.16e-23 | 95.9 |
| Msa0555410 | MtrunA17_Chr3g0079281 | 28.521 | 284 | 158 | 12 | 588 | 844 | 114 | 379 | 1.78e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555410 | AT1G06410.3 | 78.026 | 851 | 176 | 3 | 1 | 851 | 1 | 840 | 0.0 | 1381 |
| Msa0555410 | AT1G06410.1 | 78.026 | 851 | 176 | 3 | 1 | 851 | 1 | 840 | 0.0 | 1381 |
| Msa0555410 | AT1G06410.2 | 78.026 | 851 | 176 | 3 | 1 | 851 | 1 | 840 | 0.0 | 1381 |
| Msa0555410 | AT4G17770.1 | 62.818 | 866 | 304 | 6 | 1 | 861 | 1 | 853 | 0.0 | 1171 |
| Msa0555410 | AT4G17770.2 | 62.818 | 866 | 304 | 6 | 1 | 861 | 1 | 853 | 0.0 | 1171 |
| Msa0555410 | AT1G68020.2 | 62.673 | 868 | 292 | 6 | 1 | 849 | 1 | 855 | 0.0 | 1145 |
| Msa0555410 | AT1G68020.3 | 62.673 | 868 | 292 | 6 | 1 | 849 | 1 | 855 | 0.0 | 1145 |
| Msa0555410 | AT1G70290.1 | 60.660 | 849 | 318 | 4 | 1 | 846 | 1 | 836 | 0.0 | 1098 |
| Msa0555410 | AT1G23870.1 | 59.696 | 856 | 330 | 3 | 1 | 851 | 1 | 846 | 0.0 | 1093 |
| Msa0555410 | AT1G60140.6 | 60.539 | 854 | 328 | 2 | 1 | 852 | 1 | 847 | 0.0 | 1086 |
| Msa0555410 | AT1G60140.1 | 60.539 | 854 | 328 | 2 | 1 | 852 | 1 | 847 | 0.0 | 1086 |
| Msa0555410 | AT1G60140.2 | 60.539 | 854 | 328 | 2 | 1 | 852 | 1 | 847 | 0.0 | 1086 |
| Msa0555410 | AT1G60140.5 | 60.539 | 854 | 328 | 2 | 1 | 852 | 1 | 847 | 0.0 | 1086 |
| Msa0555410 | AT1G60140.4 | 60.539 | 854 | 328 | 2 | 1 | 852 | 1 | 847 | 0.0 | 1086 |
| Msa0555410 | AT2G18700.1 | 58.561 | 806 | 322 | 6 | 55 | 851 | 36 | 838 | 0.0 | 1010 |
| Msa0555410 | AT1G70290.2 | 57.008 | 849 | 311 | 5 | 1 | 846 | 1 | 798 | 0.0 | 1008 |
| Msa0555410 | AT1G60140.3 | 61.367 | 761 | 285 | 2 | 1 | 759 | 1 | 754 | 0.0 | 983 |
| Msa0555410 | AT1G68020.1 | 62.990 | 689 | 223 | 6 | 1 | 670 | 1 | 676 | 0.0 | 918 |
| Msa0555410 | AT1G16980.1 | 33.499 | 806 | 475 | 23 | 67 | 851 | 13 | 778 | 1.05e-142 | 443 |
| Msa0555410 | AT1G78580.4 | 33.421 | 757 | 434 | 21 | 67 | 797 | 93 | 805 | 1.35e-136 | 430 |
| Msa0555410 | AT1G78580.1 | 33.421 | 757 | 434 | 21 | 67 | 797 | 93 | 805 | 1.35e-136 | 430 |
| Msa0555410 | AT1G78580.2 | 33.421 | 757 | 434 | 21 | 67 | 797 | 93 | 805 | 1.35e-136 | 430 |
| Msa0555410 | AT1G78580.3 | 33.421 | 757 | 434 | 21 | 67 | 797 | 93 | 805 | 1.35e-136 | 430 |
| Msa0555410 | AT4G27550.2 | 31.598 | 826 | 479 | 22 | 67 | 850 | 5 | 786 | 1.82e-135 | 423 |
| Msa0555410 | AT4G27550.1 | 32.005 | 828 | 482 | 23 | 67 | 850 | 5 | 795 | 2.15e-135 | 423 |
| Msa0555410 | AT1G16980.2 | 35.105 | 621 | 353 | 18 | 67 | 677 | 13 | 593 | 1.62e-118 | 374 |
Find 235 sgRNAs with CRISPR-Local
Find 396 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCGGAGGATGATTATATT+TGG | 0.168883 | 4_1:-53414814 | Msa0555410:CDS |
| TGTGGTAATTGCTCTGATTT+TGG | 0.190443 | 4_1:-53412819 | Msa0555410:CDS |
| AGGTATAAATTTGAAGATTC+TGG | 0.215594 | 4_1:-53414360 | Msa0555410:CDS |
| CAAAGAGGTCATATCTCTTT+TGG | 0.226862 | 4_1:-53413568 | Msa0555410:CDS |
| ACTGAGGTTTCTCCTGATTT+AGG | 0.229245 | 4_1:-53411237 | Msa0555410:three_prime_UTR |
| CCGGCAATGGGATCGGGGTT+GGG | 0.236177 | 4_1:-53415370 | Msa0555410:CDS |
| TTTGCTTGGACTCTTATTAA+TGG | 0.243265 | 4_1:+53413587 | None:intergenic |
| ATTACAAGCATGCTCTTCTT+TGG | 0.251977 | 4_1:+53413996 | None:intergenic |
| AATAAATATGCTAGAATCTT+TGG | 0.258899 | 4_1:-53411324 | Msa0555410:CDS |
| TCTGTATATAGTTTCATTAC+AGG | 0.258995 | 4_1:+53412777 | None:intergenic |
| TTATTCTACCATTCTAGTTT+TGG | 0.266496 | 4_1:-53411031 | Msa0555410:three_prime_UTR |
| CGGCAATGGGATCGGGGTTG+GGG | 0.275013 | 4_1:-53415369 | Msa0555410:CDS |
| AGGGATGCCGACCTTGGTTT+TGG | 0.277265 | 4_1:-53412699 | Msa0555410:CDS |
| TTTGCTTGGTATTGACGATA+TGG | 0.281634 | 4_1:-53414393 | Msa0555410:CDS |
| TTCGCATTTGAACTTGATTC+AGG | 0.288866 | 4_1:+53414023 | None:intergenic |
| ACAGCTCTTCCTTGCCATTT+GGG | 0.295677 | 4_1:+53414311 | None:intergenic |
| GTAATATTCTTTGCGACAAT+TGG | 0.295825 | 4_1:-53411182 | Msa0555410:three_prime_UTR |
| TCCCAGAAGCCAAATCTAAA+AGG | 0.296805 | 4_1:+53415398 | None:intergenic |
| TGGATTGAAGCAATGGTTAT+TGG | 0.313234 | 4_1:+53416040 | None:intergenic |
| AGATAATACTTTGCTTTACT+TGG | 0.315020 | 4_1:+53411365 | None:intergenic |
| GACGAGCATAATCGAAAGTA+TGG | 0.320887 | 4_1:+53414621 | None:intergenic |
| CTCTAGCAGGGTTAACTATC+TGG | 0.321636 | 4_1:+53414282 | None:intergenic |
| TTCTTTGCTATTACAGCTTA+AGG | 0.321784 | 4_1:-53415137 | Msa0555410:CDS |
| AATTTCCCGGCAATGGGATC+GGG | 0.321895 | 4_1:-53415376 | Msa0555410:CDS |
| GCTTCTGCAAAAGGCAATTA+TGG | 0.326836 | 4_1:-53414958 | Msa0555410:CDS |
| AACAGCTCTTCCTTGCCATT+TGG | 0.326987 | 4_1:+53414310 | None:intergenic |
| TTGTAATATCAGAATTTATT+GGG | 0.327538 | 4_1:-53413980 | Msa0555410:CDS |
| CCCAACCCCGATCCCATTGC+CGG | 0.334050 | 4_1:+53415370 | None:intergenic |
| TTTAGTATCTCCTCCCTAAC+AGG | 0.334244 | 4_1:+53414674 | None:intergenic |
| CAATATATTCATAAGGAGTT+AGG | 0.335793 | 4_1:+53414069 | None:intergenic |
| CTTGTAATATCAGAATTTAT+TGG | 0.336765 | 4_1:-53413981 | Msa0555410:CDS |
| TTACTAAATTCTGATATCAT+TGG | 0.338425 | 4_1:-53414647 | Msa0555410:CDS |
| TATCTAGGATTGGAATATTA+CGG | 0.338808 | 4_1:-53414542 | Msa0555410:CDS |
| CCCGGAGGATGATTATATTT+GGG | 0.339590 | 4_1:-53414813 | Msa0555410:CDS |
| GGAGAAACCTCAGTCAAGTT+TGG | 0.341491 | 4_1:+53411246 | None:intergenic |
| TGACCACTCTTTGCGGCAAC+AGG | 0.344178 | 4_1:+53412621 | None:intergenic |
| TATATAGGACTCTTCCTGTT+AGG | 0.344777 | 4_1:-53414688 | Msa0555410:CDS |
| GCACTCATGACGTGGCTTAC+TGG | 0.351395 | 4_1:-53413821 | Msa0555410:CDS |
| ACACTCAGCAAGGCTGTAAT+AGG | 0.352058 | 4_1:+53414124 | None:intergenic |
| GTGCTTTGGTTTGGCAATAC+AGG | 0.355182 | 4_1:-53412719 | Msa0555410:CDS |
| ACTTTCCTTTCGTTCAATAC+TGG | 0.357028 | 4_1:+53412740 | None:intergenic |
| TTACAAGCATGCTCTTCTTT+GGG | 0.358274 | 4_1:+53413997 | None:intergenic |
| CCCGGCAATGGGATCGGGGT+TGG | 0.361167 | 4_1:-53415371 | Msa0555410:CDS |
| TTCTGGGAATTTCCCGGCAA+TGG | 0.361171 | 4_1:-53415383 | Msa0555410:CDS |
| GTTTGTAGACAGGGAATATC+TGG | 0.365870 | 4_1:-53414047 | Msa0555410:CDS |
| AAGTAAAGCAAAGTATTATC+TGG | 0.370428 | 4_1:-53411363 | Msa0555410:CDS |
| TCACCATGCATAGAAGAATC+TGG | 0.371337 | 4_1:-53411284 | Msa0555410:CDS |
| CTCTCCATCACTCATTGAAA+TGG | 0.371727 | 4_1:+53413881 | None:intergenic |
| TAATATTCTTTGCGACAATT+GGG | 0.374062 | 4_1:-53411181 | Msa0555410:three_prime_UTR |
| GGATGGATTTCCAGAAGATA+TGG | 0.376566 | 4_1:-53415116 | Msa0555410:CDS |
| CAATGGGATCGGGGTTGGGG+AGG | 0.379709 | 4_1:-53415366 | Msa0555410:CDS |
| TCCTGCTGCAGTCGTATGTT+GGG | 0.381549 | 4_1:-53414590 | Msa0555410:CDS |
| AGATCATCTAGAAAGTGTTT+TGG | 0.381754 | 4_1:-53412652 | Msa0555410:CDS |
| TTTGGCTTCTGGGAATTTCC+CGG | 0.382943 | 4_1:-53415389 | Msa0555410:CDS |
| GGTTCATGATTACCATTTGA+TGG | 0.383452 | 4_1:-53414792 | Msa0555410:CDS |
| TACAGAACCTCCATATCTTC+TGG | 0.384072 | 4_1:+53415106 | None:intergenic |
| TTCCATCATCGGAGATATAT+AGG | 0.388493 | 4_1:-53414703 | Msa0555410:CDS |
| ATCTAGGATTGGAATATTAC+GGG | 0.399527 | 4_1:-53414541 | Msa0555410:CDS |
| AGTTTCCCATTCACCGTCTT+GGG | 0.399757 | 4_1:+53412842 | None:intergenic |
| ACCATCATAGTCCAACAAAA+TGG | 0.400346 | 4_1:+53413629 | None:intergenic |
| TGAATATATTGTTTGTAGAC+AGG | 0.403035 | 4_1:-53414057 | Msa0555410:CDS |
| CTTTGCGGCAACAGGCTCAT+TGG | 0.407919 | 4_1:+53412629 | None:intergenic |
| TTCCTGCTGCAGTCGTATGT+TGG | 0.414477 | 4_1:-53414591 | Msa0555410:CDS |
| GAATTTCCCGGCAATGGGAT+CGG | 0.414755 | 4_1:-53415377 | Msa0555410:CDS |
| TGAACGAAAGGAAAGTGCTT+TGG | 0.417964 | 4_1:-53412733 | Msa0555410:CDS |
| AGCAGGATCAACAGAGTGTT+TGG | 0.419750 | 4_1:-53414209 | Msa0555410:CDS |
| GAAAGGAAAGTGCTTTGGTT+TGG | 0.425700 | 4_1:-53412728 | Msa0555410:CDS |
| TCTGGGAATTTCCCGGCAAT+GGG | 0.427458 | 4_1:-53415382 | Msa0555410:CDS |
| ATCGTCAATACCAAGCAAAA+TGG | 0.428223 | 4_1:+53414397 | None:intergenic |
| TAAAAGTTTGCCAAAACATC+AGG | 0.429012 | 4_1:+53414986 | None:intergenic |
| TTTATGATGGCTTCTGCAAA+AGG | 0.429950 | 4_1:-53414967 | Msa0555410:CDS |
| GGTGGTCCCAAGACGGTGAA+TGG | 0.434178 | 4_1:-53412848 | Msa0555410:CDS |
| AAAGCTCTCAATTGATGCTA+TGG | 0.434592 | 4_1:-53413682 | Msa0555410:CDS |
| AAACGCCTTCTTAGAAAAGT+TGG | 0.435169 | 4_1:+53414764 | None:intergenic |
| CTCAGAGGTTGATGATGATC+AGG | 0.436611 | 4_1:-53415290 | Msa0555410:CDS |
| TCTGTATTTGCTTGCACGGT+TGG | 0.440122 | 4_1:-53411395 | Msa0555410:CDS |
| GGTGTTCTCCATCGCTTAGT+GGG | 0.441085 | 4_1:-53413959 | Msa0555410:CDS |
| TGGGGAATAGGTCTTAGCTT+TGG | 0.442950 | 4_1:-53413738 | Msa0555410:CDS |
| GTTAACCCTGCTAGAGGTAA+AGG | 0.443791 | 4_1:-53414275 | Msa0555410:CDS |
| GGGTGTTCTCCATCGCTTAG+TGG | 0.443816 | 4_1:-53413960 | Msa0555410:CDS |
| GATCTGTCAATAAACACAAT+AGG | 0.448371 | 4_1:+53414170 | None:intergenic |
| TGATGTATCACAGTATTTGC+TGG | 0.449009 | 4_1:-53415041 | Msa0555410:CDS |
| TGTATCCCTTTACCTCTAGC+AGG | 0.449011 | 4_1:+53414269 | None:intergenic |
| TGCGGCATGAAAAGCATTAT+CGG | 0.451086 | 4_1:-53413851 | Msa0555410:CDS |
| GTGTTATTGTCACAGCTGTA+AGG | 0.453106 | 4_1:-53414103 | Msa0555410:CDS |
| CTTGGAATTGCTGCAGAACA+TGG | 0.454255 | 4_1:-53413453 | Msa0555410:CDS |
| GAACATAGGCTTCCCACAAA+TGG | 0.459768 | 4_1:+53414879 | None:intergenic |
| GATAAACTGACCACTCTTTG+CGG | 0.461574 | 4_1:+53412614 | None:intergenic |
| CATTGTTAGTGGACGGGGTA+GGG | 0.464339 | 4_1:-53413511 | Msa0555410:CDS |
| TGCTGAAACAACACCCCAAA+TGG | 0.466478 | 4_1:-53414325 | Msa0555410:CDS |
| TAAAAGGTTTGTATACGATC+TGG | 0.467408 | 4_1:+53415414 | None:intergenic |
| AAATTTGAAGATTCTGGCTA+TGG | 0.469132 | 4_1:-53414354 | Msa0555410:CDS |
| CAGTCAAAGAGGGGTTATCT+AGG | 0.470100 | 4_1:-53414557 | Msa0555410:CDS |
| AATGGGATCGGGGTTGGGGA+GGG | 0.470267 | 4_1:-53415365 | Msa0555410:CDS |
| GCAGTTGCTTCAACATTCCA+TGG | 0.470653 | 4_1:+53413921 | None:intergenic |
| CACCATGCATAGAAGAATCT+GGG | 0.476735 | 4_1:-53411283 | Msa0555410:CDS |
| AGAGAAAGAAAGAGAAAGAA+GGG | 0.477124 | 4_1:-53416165 | Msa0555410:five_prime_UTR |
| ACCGCTTTGATCGCCATTTG+TGG | 0.477691 | 4_1:-53414892 | Msa0555410:CDS |
| ACCCAAATATAATCATCCTC+CGG | 0.481751 | 4_1:+53414812 | None:intergenic |
| CGATCAGAAGAAATAGTTGA+CGG | 0.482348 | 4_1:+53415244 | None:intergenic |
| TGCTTCTGTATTTGCTTGCA+CGG | 0.482357 | 4_1:-53411399 | Msa0555410:CDS |
| GAGAGAAAGAAAGAGAAAGA+AGG | 0.484006 | 4_1:-53416166 | Msa0555410:five_prime_UTR |
| AAGTTTCCCATTCACCGTCT+TGG | 0.485112 | 4_1:+53412841 | None:intergenic |
| ATATAGGACTCTTCCTGTTA+GGG | 0.485478 | 4_1:-53414687 | Msa0555410:CDS |
| CAGCTTGTTTGCCAGAACAT+AGG | 0.487233 | 4_1:+53414865 | None:intergenic |
| CCGAGGGTTATGAGTGTCCC+GGG | 0.488412 | 4_1:-53415319 | Msa0555410:CDS |
| AGCAAATACAGAAGCATTGG+AGG | 0.488464 | 4_1:+53411406 | None:intergenic |
| TATATCTCCGATGATGGAAA+GGG | 0.489420 | 4_1:+53414707 | None:intergenic |
| ACCCAACATACGACTGCAGC+AGG | 0.490840 | 4_1:+53414589 | None:intergenic |
| AATGACTGAAAGTGACAAAC+AGG | 0.491293 | 4_1:-53411516 | Msa0555410:CDS |
| GTATTAAGATCATGCCTGTC+GGG | 0.494321 | 4_1:-53414508 | Msa0555410:CDS |
| CCGCTTTGATCGCCATTTGT+GGG | 0.494408 | 4_1:-53414891 | Msa0555410:CDS |
| GTCCTATATATCTCCGATGA+TGG | 0.496938 | 4_1:+53414701 | None:intergenic |
| GCCGAGGGTTATGAGTGTCC+CGG | 0.498721 | 4_1:-53415320 | Msa0555410:CDS |
| AACTTTCTTCTATTTCAGAA+TGG | 0.500344 | 4_1:+53414234 | None:intergenic |
| TTTGTGGGAAGCCTATGTTC+TGG | 0.500908 | 4_1:-53414876 | Msa0555410:CDS |
| CTACAAACAATATATTCATA+AGG | 0.502334 | 4_1:+53414062 | None:intergenic |
| CAGTAGCAGATTGAGATTGA+AGG | 0.504875 | 4_1:+53416066 | None:intergenic |
| GATATGGAGGTTCTGTATGT+TGG | 0.504909 | 4_1:-53415100 | Msa0555410:CDS |
| GTAGGGATAGCTTAAGTGAA+TGG | 0.505507 | 4_1:-53413494 | Msa0555410:CDS |
| CCCAAATATAATCATCCTCC+GGG | 0.508556 | 4_1:+53414813 | None:intergenic |
| GCATAGCCCCTTTCCATCAT+CGG | 0.508587 | 4_1:-53414714 | Msa0555410:CDS |
| GCTGACTTTGTCCTGTGTGT+TGG | 0.508603 | 4_1:-53411494 | Msa0555410:CDS |
| AAAGAGGGGTTATCTAGGAT+TGG | 0.508611 | 4_1:-53414552 | Msa0555410:CDS |
| CTGCTACTCCAAAACTAGAA+TGG | 0.508913 | 4_1:+53411023 | None:intergenic |
| TGCTTTGGTTTGGCAATACA+GGG | 0.511440 | 4_1:-53412718 | Msa0555410:CDS |
| GATGTCGGATGAGGAGTGTA+AGG | 0.511899 | 4_1:-53414453 | Msa0555410:CDS |
| AACAGAGTGTTTGGACGACC+TGG | 0.514305 | 4_1:-53414200 | Msa0555410:CDS |
| GAGCTCAAACAGCAATTTGA+AGG | 0.515176 | 4_1:-53414425 | Msa0555410:CDS |
| CAGCTCTTCCTTGCCATTTG+GGG | 0.515782 | 4_1:+53414312 | None:intergenic |
| TTAACCCTGCTAGAGGTAAA+GGG | 0.516128 | 4_1:-53414274 | Msa0555410:CDS |
| AAGAACGAAGGCGGATGCCG+AGG | 0.520114 | 4_1:-53415336 | Msa0555410:CDS |
| CAATACAGGGATGCCGACCT+TGG | 0.520176 | 4_1:-53412705 | Msa0555410:CDS |
| TCATTGTTAGTGGACGGGGT+AGG | 0.521156 | 4_1:-53413512 | Msa0555410:CDS |
| AGACATGGAGAGGGCTTGCA+CGG | 0.522594 | 4_1:-53413781 | Msa0555410:CDS |
| AAATTGAAAACTGACCTTGT+TGG | 0.523531 | 4_1:+53416020 | None:intergenic |
| ATATATCTCCGATGATGGAA+AGG | 0.524519 | 4_1:+53414706 | None:intergenic |
| AGAGATATGACCTCTTTGCT+TGG | 0.525145 | 4_1:+53413573 | None:intergenic |
| GCAAGCAAATACAGAAGCAT+TGG | 0.525460 | 4_1:+53411403 | None:intergenic |
| GTGGTCCCAAGACGGTGAAT+GGG | 0.525548 | 4_1:-53412847 | Msa0555410:CDS |
| TATTGTGTTTATTGACAGAT+CGG | 0.528425 | 4_1:-53414168 | Msa0555410:CDS |
| TTGCTATTACAGCTTAAGGA+TGG | 0.530659 | 4_1:-53415133 | Msa0555410:CDS |
| AGAACGAAGGCGGATGCCGA+GGG | 0.530953 | 4_1:-53415335 | Msa0555410:CDS |
| TATTGAATGAAATATAAAAG+TGG | 0.533469 | 4_1:+53416238 | None:intergenic |
| TAGCTTTGGATTTAGAGTTG+TGG | 0.534487 | 4_1:-53413724 | Msa0555410:CDS |
| GATACATCATCTTGTTCAGC+GGG | 0.537461 | 4_1:+53415055 | None:intergenic |
| CCAACCCCGATCCCATTGCC+GGG | 0.537737 | 4_1:+53415371 | None:intergenic |
| GATAAACAGAGAAAATGAAA+AGG | 0.539477 | 4_1:+53411130 | None:intergenic |
| ACATCAGGAGGCAGAAAAGT+GGG | 0.540834 | 4_1:+53415001 | None:intergenic |
| GGGCTATCCGTGTCAATCCA+TGG | 0.541240 | 4_1:-53413938 | Msa0555410:CDS |
| ACGTAGTTTCTTGCAAGACA+TGG | 0.542110 | 4_1:-53413796 | Msa0555410:CDS |
| AAGTTGGCAGCACCATCAAA+TGG | 0.542653 | 4_1:+53414780 | None:intergenic |
| GAATATATTGTTTGTAGACA+GGG | 0.549934 | 4_1:-53414056 | Msa0555410:CDS |
| TCAACCTCTGAGACAATCCC+CGG | 0.551143 | 4_1:+53415301 | None:intergenic |
| TGTTATGAGGATGTCGGATG+AGG | 0.553523 | 4_1:-53414462 | Msa0555410:CDS |
| CTTACAAGAGAGCAAAGAGT+AGG | 0.556704 | 4_1:-53413653 | Msa0555410:CDS |
| AAATAGAAGAAAGTTGCAGC+AGG | 0.559745 | 4_1:-53414226 | Msa0555410:CDS |
| ATTTCCCGGCAATGGGATCG+GGG | 0.560954 | 4_1:-53415375 | Msa0555410:CDS |
| CATGCCTGTCGGGATTCACA+TGG | 0.562430 | 4_1:-53414498 | Msa0555410:CDS |
| AAACAAGCTGTTCTTTCAGA+AGG | 0.565229 | 4_1:-53414852 | Msa0555410:CDS |
| ACCTTGTTGGATTGAAGCAA+TGG | 0.566395 | 4_1:+53416033 | None:intergenic |
| CTGTCGGGATTCACATGGGT+CGG | 0.567181 | 4_1:-53414493 | Msa0555410:CDS |
| TTACAAGAGAGCAAAGAGTA+GGG | 0.570138 | 4_1:-53413652 | Msa0555410:CDS |
| CGACCCATGTGAATCCCGAC+AGG | 0.570473 | 4_1:+53414494 | None:intergenic |
| CCCGGGACACTCATAACCCT+CGG | 0.570549 | 4_1:+53415319 | None:intergenic |
| ATTGTCACAGCTGTAAGGGA+TGG | 0.572045 | 4_1:-53414098 | Msa0555410:CDS |
| CTTGAATCCAAACTTGACTG+AGG | 0.572634 | 4_1:-53411253 | Msa0555410:exon |
| TCCCCAGATTCTTCTATGCA+TGG | 0.572909 | 4_1:+53411281 | None:intergenic |
| AACATCAGGAGGCAGAAAAG+TGG | 0.573267 | 4_1:+53415000 | None:intergenic |
| GAAGCCATTTCAATGAGTGA+TGG | 0.574264 | 4_1:-53413885 | Msa0555410:CDS |
| GAGCCTGTTGCCGCAAAGAG+TGG | 0.574335 | 4_1:-53412624 | Msa0555410:CDS |
| TTGTCACAGCTGTAAGGGAT+GGG | 0.578214 | 4_1:-53414097 | Msa0555410:CDS |
| TGGTAGAATAAACGATGAAG+AGG | 0.579424 | 4_1:+53411043 | None:intergenic |
| TCTAGAGTATCAGTCAAAGA+GGG | 0.581200 | 4_1:-53414567 | Msa0555410:CDS |
| TATCGTTGAAGTGAAGCCCC+AGG | 0.581315 | 4_1:-53412595 | Msa0555410:intron |
| GCATTGCAGGATGTGAGCAA+AGG | 0.581846 | 4_1:-53411566 | Msa0555410:intron |
| GTCGGATTGAATCTGTTATG+AGG | 0.584194 | 4_1:-53414475 | Msa0555410:CDS |
| CAGTCAAGTTTGGATTCAAG+AGG | 0.585127 | 4_1:+53411256 | None:intergenic |
| AATATTCTTTGCGACAATTG+GGG | 0.592899 | 4_1:-53411180 | Msa0555410:three_prime_UTR |
| TGGTTCCAGTATTGAACGAA+AGG | 0.595735 | 4_1:-53412745 | Msa0555410:CDS |
| AGAAAAGAGAGGACAACAAA+GGG | 0.596911 | 4_1:-53415183 | Msa0555410:CDS |
| AAGAAAAGAGAGGACAACAA+AGG | 0.597247 | 4_1:-53415184 | Msa0555410:CDS |
| GTCTAGAGTATCAGTCAAAG+AGG | 0.599688 | 4_1:-53414568 | Msa0555410:CDS |
| AGAAGATCCAAAACCAAGGT+CGG | 0.600676 | 4_1:+53412692 | None:intergenic |
| CAACATTCCATGGATTGACA+CGG | 0.605906 | 4_1:+53413931 | None:intergenic |
| AGTATTAAGATCATGCCTGT+CGG | 0.607541 | 4_1:-53414509 | Msa0555410:CDS |
| CTATATACAGAGGCAACTGA+TGG | 0.609983 | 4_1:-53412765 | Msa0555410:CDS |
| CGGATAGCCCCACTAAGCGA+TGG | 0.610821 | 4_1:+53413951 | None:intergenic |
| TAATAAGAGTCCAAGCAAAG+AGG | 0.616472 | 4_1:-53413583 | Msa0555410:CDS |
| TGTCCCGGGGATTGTCTCAG+AGG | 0.616643 | 4_1:-53415305 | Msa0555410:CDS |
| GTATCCCTTTACCTCTAGCA+GGG | 0.618579 | 4_1:+53414270 | None:intergenic |
| TGACAATAACACACTCAGCA+AGG | 0.622584 | 4_1:+53414114 | None:intergenic |
| GGATGAGGAGTGTAAGGCAA+GGG | 0.623073 | 4_1:-53414447 | Msa0555410:CDS |
| CAGATAGTTAACCCTGCTAG+AGG | 0.623112 | 4_1:-53414281 | Msa0555410:CDS |
| TAGTTAGTAGTGCAATCTCA+AGG | 0.623819 | 4_1:-53411439 | Msa0555410:CDS |
| CAGAACATGGATACTTCTTG+AGG | 0.624436 | 4_1:-53413440 | Msa0555410:intron |
| AAACAACACCCCAAATGGCA+AGG | 0.628534 | 4_1:-53414320 | Msa0555410:CDS |
| TTTCTTGCAAGACATGGAGA+GGG | 0.628667 | 4_1:-53413790 | Msa0555410:CDS |
| GACGGTGAATGGGAAACTTG+TGG | 0.631275 | 4_1:-53412837 | Msa0555410:CDS |
| GTGATGGAGAGAAGCAGTTG+CGG | 0.631761 | 4_1:-53413869 | Msa0555410:CDS |
| GTGTTCTCCATCGCTTAGTG+GGG | 0.632837 | 4_1:-53413958 | Msa0555410:CDS |
| GTATGTCAGCACTCATGACG+TGG | 0.632870 | 4_1:-53413829 | Msa0555410:CDS |
| ATCTGTCATCACCAACACAC+AGG | 0.635325 | 4_1:+53411483 | None:intergenic |
| TGGATTTCCAGAAGATATGG+AGG | 0.636676 | 4_1:-53415113 | Msa0555410:CDS |
| TAGGACTCTTCCTGTTAGGG+AGG | 0.637903 | 4_1:-53414684 | Msa0555410:CDS |
| AAAGAGAGGACAACAAAGGG+TGG | 0.638553 | 4_1:-53415180 | Msa0555410:CDS |
| CGGATGAGGAGTGTAAGGCA+AGG | 0.638820 | 4_1:-53414448 | Msa0555410:CDS |
| TTTGAAAGCTAAGAAAAGAG+AGG | 0.639677 | 4_1:-53415194 | Msa0555410:CDS |
| GTTTCTTGCAAGACATGGAG+AGG | 0.640852 | 4_1:-53413791 | Msa0555410:CDS |
| AAGTTTGCCAAAACATCAGG+AGG | 0.642149 | 4_1:+53414989 | None:intergenic |
| ATGCCTGTCGGGATTCACAT+GGG | 0.643775 | 4_1:-53414497 | Msa0555410:CDS |
| GGTAGTTGAAATAATAAACC+CGG | 0.646249 | 4_1:-53414831 | Msa0555410:CDS |
| AACACAATAGGTTCATAACC+AGG | 0.652850 | 4_1:+53414182 | None:intergenic |
| CATCAGGAGGCAGAAAAGTG+GGG | 0.652893 | 4_1:+53415002 | None:intergenic |
| GAATGTTGAAGCAACTGCGG+AGG | 0.653258 | 4_1:-53413916 | Msa0555410:CDS |
| TGATACATCATCTTGTTCAG+CGG | 0.658366 | 4_1:+53415054 | None:intergenic |
| ATATCTCCGATGATGGAAAG+GGG | 0.659124 | 4_1:+53414708 | None:intergenic |
| TGTTATTGTCACAGCTGTAA+GGG | 0.659939 | 4_1:-53414102 | Msa0555410:CDS |
| TGAATCTGTTATGAGGATGT+CGG | 0.662042 | 4_1:-53414468 | Msa0555410:CDS |
| ACCATTGCTTCAATCCAACA+AGG | 0.667180 | 4_1:-53416034 | Msa0555410:intron |
| ACAAATGGCGATCAAAGCGG+TGG | 0.668272 | 4_1:+53414894 | None:intergenic |
| ACCATGCATAGAAGAATCTG+GGG | 0.671869 | 4_1:-53411282 | Msa0555410:CDS |
| CAACCTCTGAGACAATCCCC+GGG | 0.672054 | 4_1:+53415302 | None:intergenic |
| GGAGGGAGTTTAAAGAACGA+AGG | 0.681613 | 4_1:-53415348 | Msa0555410:CDS |
| TGTAATGAAACTATATACAG+AGG | 0.682097 | 4_1:-53412775 | Msa0555410:CDS |
| CTAGAGTATCAGTCAAAGAG+GGG | 0.688713 | 4_1:-53414566 | Msa0555410:CDS |
| ATGGAATGTTGAAGCAACTG+CGG | 0.690516 | 4_1:-53413919 | Msa0555410:CDS |
| TAGGATTGGAATATTACGGG+AGG | 0.692571 | 4_1:-53414538 | Msa0555410:CDS |
| CGAGGGTTATGAGTGTCCCG+GGG | 0.699920 | 4_1:-53415318 | Msa0555410:CDS |
| GGGAGTTTAAAGAACGAAGG+CGG | 0.701696 | 4_1:-53415345 | Msa0555410:CDS |
| CCCACAAATGGCGATCAAAG+CGG | 0.706904 | 4_1:+53414891 | None:intergenic |
| TGGTGATGACAGATCAGATG+AGG | 0.713489 | 4_1:-53411474 | Msa0555410:CDS |
| TGTGAGCAAAGGCTTAGTTG+CGG | 0.713566 | 4_1:-53411555 | Msa0555410:CDS |
| CCTGAGAAGATCCAAAACCA+AGG | 0.716480 | 4_1:+53412688 | None:intergenic |
| AGTTGAAATAATAAACCCGG+AGG | 0.724497 | 4_1:-53414828 | Msa0555410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTGAAAATAATATTTT+AGG | - | chr4_1:53413927-53413946 | Msa0555410:CDS | 10.0% |
| !!! | AAATTTATGTTCTAATTTTT+TGG | - | chr4_1:53415457-53415476 | Msa0555410:five_prime_UTR | 10.0% |
| !! | TATTGAATGAAATATAAAAG+TGG | + | chr4_1:53411038-53411057 | None:intergenic | 15.0% |
| !! | TTGTAATATCAGAATTTATT+GGG | - | chr4_1:53413293-53413312 | Msa0555410:intron | 15.0% |
| !! | TTAAAATTGAAAACAGAAAA+TGG | + | chr4_1:53414880-53414899 | None:intergenic | 15.0% |
| !!! | AACTTTTTAAAATGAAAACA+AGG | + | chr4_1:53414917-53414936 | None:intergenic | 15.0% |
| !!! | TTGTTTTTACCATATAATTT+TGG | - | chr4_1:53415600-53415619 | Msa0555410:intron | 15.0% |
| !!! | TACAACATAGTAATTTTTTT+TGG | - | chr4_1:53416183-53416202 | Msa0555410:five_prime_UTR | 15.0% |
| !!! | ACAACATAGTAATTTTTTTT+GGG | - | chr4_1:53416184-53416203 | Msa0555410:five_prime_UTR | 15.0% |
| !!! | GTAAAAATTGAAACTTTTCT+TGG | - | chr4_1:53411480-53411499 | Msa0555410:CDS | 20.0% |
| !! | TTACTAAATTCTGATATCAT+TGG | - | chr4_1:53412626-53412645 | Msa0555410:CDS | 20.0% |
| !! | CTACAAACAATATATTCATA+AGG | + | chr4_1:53413214-53413233 | None:intergenic | 20.0% |
| !! | CTTGTAATATCAGAATTTAT+TGG | - | chr4_1:53413292-53413311 | Msa0555410:intron | 20.0% |
| !!! | TTGAGAGCTTTTTAAAATTA+GGG | + | chr4_1:53413582-53413601 | None:intergenic | 20.0% |
| !!! | ATTGAGAGCTTTTTAAAATT+AGG | + | chr4_1:53413583-53413602 | None:intergenic | 20.0% |
| !!! | ACAATGAAAACAACATTTTT+GGG | + | chr4_1:53413748-53413767 | None:intergenic | 20.0% |
| !!! | AACAATGAAAACAACATTTT+TGG | + | chr4_1:53413749-53413768 | None:intergenic | 20.0% |
| !! | TAAATTGAAATTCATGTGTA+TGG | - | chr4_1:53414114-53414133 | Msa0555410:CDS | 20.0% |
| !!! | GTTCTCTTCTTTTTATAATT+TGG | - | chr4_1:53414373-53414392 | Msa0555410:CDS | 20.0% |
| !!! | TTGTTTTCAAAGTTAACAAT+AGG | + | chr4_1:53414965-53414984 | None:intergenic | 20.0% |
| !!! | AAATCAAATTGCTATTTAAC+AGG | + | chr4_1:53415085-53415104 | None:intergenic | 20.0% |
| !!! | CTATTTTTTTTTTTCTACCA+TGG | - | chr4_1:53415344-53415363 | Msa0555410:CDS | 20.0% |
| !!! | TGGAACATTTTCTTATTAAA+TGG | + | chr4_1:53415370-53415389 | None:intergenic | 20.0% |
| !! | AAATTAGAACATAAATTTGC+AGG | + | chr4_1:53415455-53415474 | None:intergenic | 20.0% |
| !! | AATAAATATGCTAGAATCTT+TGG | - | chr4_1:53415949-53415968 | Msa0555410:intron | 20.0% |
| !!! | ACCCTAGTTTTTTCTTTTTT+CGG | - | chr4_1:53411155-53411174 | Msa0555410:three_prime_UTR | 25.0% |
| ! | ACCGAAAAAAGAAAAAACTA+GGG | + | chr4_1:53411159-53411178 | None:intergenic | 25.0% |
| ! | AACCGAAAAAAGAAAAAACT+AGG | + | chr4_1:53411160-53411179 | None:intergenic | 25.0% |
| !!! | TTCCATTGTTTTGTATCAAA+AGG | - | chr4_1:53411274-53411293 | Msa0555410:CDS | 25.0% |
| !!! | TCCATTGTTTTGTATCAAAA+GGG | - | chr4_1:53411275-53411294 | Msa0555410:CDS | 25.0% |
| !! | AAAGGGAAAATTGAACTTTT+AGG | - | chr4_1:53411292-53411311 | Msa0555410:CDS | 25.0% |
| ! | AAATTCTATACACCTAAAAC+GGG | + | chr4_1:53411440-53411459 | None:intergenic | 25.0% |
| ! | CAAATTCTATACACCTAAAA+CGG | + | chr4_1:53411441-53411460 | None:intergenic | 25.0% |
| !!! | GTTTTAGGTGTATAGAATTT+GGG | - | chr4_1:53411440-53411459 | Msa0555410:CDS | 25.0% |
| !!! | TTTTAGGTGTATAGAATTTG+GGG | - | chr4_1:53411441-53411460 | Msa0555410:CDS | 25.0% |
| !! | TAAGAGAATGTATGTTTTGT+TGG | - | chr4_1:53411638-53411657 | Msa0555410:intron | 25.0% |
| !!! | TGTGTGTGTTTTTTTTTTGT+TGG | - | chr4_1:53411703-53411722 | Msa0555410:intron | 25.0% |
| !! | GTATACAAACCTTTTAGATT+TGG | - | chr4_1:53411866-53411885 | Msa0555410:intron | 25.0% |
| !! | TATCTAGGATTGGAATATTA+CGG | - | chr4_1:53412731-53412750 | Msa0555410:CDS | 25.0% |
| ! | AGGTATAAATTTGAAGATTC+TGG | - | chr4_1:53412913-53412932 | Msa0555410:intron | 25.0% |
| ! | AACTTTCTTCTATTTCAGAA+TGG | + | chr4_1:53413042-53413061 | None:intergenic | 25.0% |
| ! | TATTGTGTTTATTGACAGAT+CGG | - | chr4_1:53413105-53413124 | Msa0555410:intron | 25.0% |
| ! | CAATATATTCATAAGGAGTT+AGG | + | chr4_1:53413207-53413226 | None:intergenic | 25.0% |
| ! | TGAATATATTGTTTGTAGAC+AGG | - | chr4_1:53413216-53413235 | Msa0555410:intron | 25.0% |
| ! | GAATATATTGTTTGTAGACA+GGG | - | chr4_1:53413217-53413236 | Msa0555410:intron | 25.0% |
| !! | CAATGAAAACAACATTTTTG+GGG | + | chr4_1:53413747-53413766 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTCATTGTTAG+TGG | - | chr4_1:53413751-53413770 | Msa0555410:CDS | 25.0% |
| !!! | AAAGTGTTTTAAAGTCCAAT+TGG | - | chr4_1:53414073-53414092 | Msa0555410:CDS | 25.0% |
| ! | TATCAAGAAAGTGAACATTT+GGG | + | chr4_1:53414340-53414359 | None:intergenic | 25.0% |
| ! | ATATCAAGAAAGTGAACATT+TGG | + | chr4_1:53414341-53414360 | None:intergenic | 25.0% |
| ! | TTATAAAAAGAAGAGAACAC+AGG | + | chr4_1:53414371-53414390 | None:intergenic | 25.0% |
| !! | TAACAATTTGAGCATTTTTC+AGG | - | chr4_1:53414404-53414423 | Msa0555410:CDS | 25.0% |
| ! | TCTGTATATAGTTTCATTAC+AGG | + | chr4_1:53414499-53414518 | None:intergenic | 25.0% |
| ! | TGTAATGAAACTATATACAG+AGG | - | chr4_1:53414498-53414517 | Msa0555410:CDS | 25.0% |
| ! | TAGAGAAATTGTATATACCT+GGG | + | chr4_1:53414698-53414717 | None:intergenic | 25.0% |
| ! | AGCTTAGATAGCAATATTAA+GGG | - | chr4_1:53414842-53414861 | Msa0555410:CDS | 25.0% |
| ! | TCAAAGTTAACAATAGGAAA+TGG | + | chr4_1:53414959-53414978 | None:intergenic | 25.0% |
| ! | AATATGTACAGAAATCCAAA+AGG | - | chr4_1:53415026-53415045 | Msa0555410:CDS | 25.0% |
| !!! | AGTTTTCGAAGTCATTTTAT+AGG | + | chr4_1:53415179-53415198 | None:intergenic | 25.0% |
| !!! | TAGCTTTAGATAACATTGTT+AGG | + | chr4_1:53415255-53415274 | None:intergenic | 25.0% |
| ! | TGTTATATCTTACGTAAAGT+TGG | + | chr4_1:53415308-53415327 | None:intergenic | 25.0% |
| !! | ATTTTCTTATTAAATGGCCA+TGG | + | chr4_1:53415364-53415383 | None:intergenic | 25.0% |
| !!! | AGTTTTTTAGAGAAGCTTTT+TGG | - | chr4_1:53415530-53415549 | Msa0555410:intron | 25.0% |
| ! | GTGTTAAAGCCAAAATTATA+TGG | + | chr4_1:53415612-53415631 | None:intergenic | 25.0% |
| ! | AGATAATACTTTGCTTTACT+TGG | + | chr4_1:53415911-53415930 | None:intergenic | 25.0% |
| !! | AAGTAAAGCAAAGTATTATC+TGG | - | chr4_1:53415910-53415929 | Msa0555410:intron | 25.0% |
| ! | AAAAAAACATCACCTAAATC+AGG | + | chr4_1:53416051-53416070 | None:intergenic | 25.0% |
| ! | TAATATTCTTTGCGACAATT+GGG | - | chr4_1:53416092-53416111 | Msa0555410:five_prime_UTR | 25.0% |
| ! | GATAAACAGAGAAAATGAAA+AGG | + | chr4_1:53416146-53416165 | None:intergenic | 25.0% |
| !!! | TTATTCTACCATTCTAGTTT+TGG | - | chr4_1:53416242-53416261 | Msa0555410:five_prime_UTR | 25.0% |
| AGAGAAAGAAAGAGAAAGAA+GGG | - | chr4_1:53411108-53411127 | Msa0555410:three_prime_UTR | 30.0% | |
| AAATTGAAAACTGACCTTGT+TGG | + | chr4_1:53411256-53411275 | None:intergenic | 30.0% | |
| ! | TCCCTTTTGATACAAAACAA+TGG | + | chr4_1:53411279-53411298 | None:intergenic | 30.0% |
| AGTATACATGAACAAATACC+AGG | + | chr4_1:53411404-53411423 | None:intergenic | 30.0% | |
| !! | CGTTTTAGGTGTATAGAATT+TGG | - | chr4_1:53411439-53411458 | Msa0555410:CDS | 30.0% |
| !!! | TTGATGATGTATCTGCATTT+TGG | - | chr4_1:53411524-53411543 | Msa0555410:CDS | 30.0% |
| !!! | TATGATTGTTTTTGTCCTGT+TGG | - | chr4_1:53411733-53411752 | Msa0555410:intron | 30.0% |
| AAAAACCATTAATCACCAAC+AGG | + | chr4_1:53411751-53411770 | None:intergenic | 30.0% | |
| !!! | TTTGCAGAGTGAAGATTTTT+TGG | - | chr4_1:53411798-53411817 | Msa0555410:intron | 30.0% |
| !!! | TTGGAGAAGTGTGTATTTTT+TGG | - | chr4_1:53411817-53411836 | Msa0555410:intron | 30.0% |
| !!! | AGAAGTGTGTATTTTTTGGA+AGG | - | chr4_1:53411821-53411840 | Msa0555410:intron | 30.0% |
| TAAAAGGTTTGTATACGATC+TGG | + | chr4_1:53411862-53411881 | None:intergenic | 30.0% | |
| !! | TCTCTTTTCTTAGCTTTCAA+AGG | + | chr4_1:53412080-53412099 | None:intergenic | 30.0% |
| TTTGAAAGCTAAGAAAAGAG+AGG | - | chr4_1:53412079-53412098 | Msa0555410:intron | 30.0% | |
| !! | TTCTTTGCTATTACAGCTTA+AGG | - | chr4_1:53412136-53412155 | Msa0555410:intron | 30.0% |
| TAAAAGTTTGCCAAAACATC+AGG | + | chr4_1:53412290-53412309 | None:intergenic | 30.0% | |
| !! | GTTTTGGCAAACTTTTATGA+TGG | - | chr4_1:53412293-53412312 | Msa0555410:intron | 30.0% |
| ! | GGTAACTTGTAATGAAAAAG+TGG | + | chr4_1:53412341-53412360 | None:intergenic | 30.0% |
| ! | TGGCTTTTATCAGTTGAAAA+CGG | + | chr4_1:53412362-53412381 | None:intergenic | 30.0% |
| GGTAGTTGAAATAATAAACC+CGG | - | chr4_1:53412442-53412461 | Msa0555410:intron | 30.0% | |
| !! | CGTTTTAACAGGGTTAAAAT+GGG | - | chr4_1:53412527-53412546 | Msa0555410:intron | 30.0% |
| ! | ATCTAGGATTGGAATATTAC+GGG | - | chr4_1:53412732-53412751 | Msa0555410:CDS | 30.0% |
| ! | GACGATATGGACATTTTTAA+AGG | - | chr4_1:53412893-53412912 | Msa0555410:intron | 30.0% |
| ! | AAATTTGAAGATTCTGGCTA+TGG | - | chr4_1:53412919-53412938 | Msa0555410:intron | 30.0% |
| GATCTGTCAATAAACACAAT+AGG | + | chr4_1:53413106-53413125 | None:intergenic | 30.0% | |
| !!! | TAGGCAACTTTTTCAGTAAT+TGG | + | chr4_1:53413133-53413152 | None:intergenic | 30.0% |
| ACCTTCTTAGAAAAAGATGT+TGG | - | chr4_1:53413515-53413534 | Msa0555410:CDS | 30.0% | |
| CCTTCTTAGAAAAAGATGTT+GGG | - | chr4_1:53413516-53413535 | Msa0555410:CDS | 30.0% | |
| CTTCTTAGAAAAAGATGTTG+GGG | - | chr4_1:53413517-53413536 | Msa0555410:CDS | 30.0% | |
| ! | CTCTTATTAATGGAGTTTTG+TGG | + | chr4_1:53413679-53413698 | None:intergenic | 30.0% |
| TTTGCTTGGACTCTTATTAA+TGG | + | chr4_1:53413689-53413708 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATTGTTAGTGGA+CGG | - | chr4_1:53413755-53413774 | Msa0555410:CDS | 30.0% |
| TTTACTCCCTGTAAAAAACT+TGG | - | chr4_1:53413802-53413821 | Msa0555410:CDS | 30.0% | |
| !!! | GCAATTCCAAGTTTTTTACA+GGG | + | chr4_1:53413811-53413830 | None:intergenic | 30.0% |
| !!! | AGCAATTCCAAGTTTTTTAC+AGG | + | chr4_1:53413812-53413831 | None:intergenic | 30.0% |
| TAAAGCATACACTATCCAAT+TGG | + | chr4_1:53414091-53414110 | None:intergenic | 30.0% | |
| ! | TCTTACACTGTTGTTTAAAC+CGG | - | chr4_1:53414162-53414181 | Msa0555410:CDS | 30.0% |
| CAAACAATATATCACTCAAC+AGG | + | chr4_1:53414235-53414254 | None:intergenic | 30.0% | |
| !!! | AGATCATCTAGAAAGTGTTT+TGG | - | chr4_1:53414621-53414640 | Msa0555410:CDS | 30.0% |
| AGAGAAATTGTATATACCTG+GGG | + | chr4_1:53414697-53414716 | None:intergenic | 30.0% | |
| GTAGAGAAATTGTATATACC+TGG | + | chr4_1:53414699-53414718 | None:intergenic | 30.0% | |
| GAGCTTAGATAGCAATATTA+AGG | - | chr4_1:53414841-53414860 | Msa0555410:CDS | 30.0% | |
| !! | CGAAGTCATTTTATAGGAAA+TGG | + | chr4_1:53415173-53415192 | None:intergenic | 30.0% |
| ! | CAATGTTATCTAAAGCTAGT+AGG | - | chr4_1:53415257-53415276 | Msa0555410:CDS | 30.0% |
| GATAAAATAGATCAGGTTCT+TGG | + | chr4_1:53415405-53415424 | None:intergenic | 30.0% | |
| AGACAAGGATAAAATAGATC+AGG | + | chr4_1:53415412-53415431 | None:intergenic | 30.0% | |
| ! | GATCTATTTTATCCTTGTCT+TGG | - | chr4_1:53415412-53415431 | Msa0555410:CDS | 30.0% |
| TTTATGTCTAAAGGAACAAC+AGG | + | chr4_1:53415495-53415514 | None:intergenic | 30.0% | |
| ACAGCATCATTTATGTCTAA+AGG | + | chr4_1:53415504-53415523 | None:intergenic | 30.0% | |
| ! | TGAATCATCATTTTCCCAAA+GGG | + | chr4_1:53415674-53415693 | None:intergenic | 30.0% |
| ! | ATGAATCATCATTTTCCCAA+AGG | + | chr4_1:53415675-53415694 | None:intergenic | 30.0% |
| GTAATATTCTTTGCGACAAT+TGG | - | chr4_1:53416091-53416110 | Msa0555410:five_prime_UTR | 30.0% | |
| AATATTCTTTGCGACAATTG+GGG | - | chr4_1:53416093-53416112 | Msa0555410:five_prime_UTR | 30.0% | |
| GAGAGAAAGAAAGAGAAAGA+AGG | - | chr4_1:53411107-53411126 | Msa0555410:three_prime_UTR | 35.0% | |
| TGGATTGAAGCAATGGTTAT+TGG | + | chr4_1:53411236-53411255 | None:intergenic | 35.0% | |
| !!! | GTTTAATGCGTTTTTTTGCC+TGG | - | chr4_1:53411383-53411402 | Msa0555410:CDS | 35.0% |
| ! | ATTGTGATGTAACCCGTTTT+AGG | - | chr4_1:53411425-53411444 | Msa0555410:CDS | 35.0% |
| TGTGATCGTTTATTTCCTGA+AGG | - | chr4_1:53411552-53411571 | Msa0555410:CDS | 35.0% | |
| GTGATCGTTTATTTCCTGAA+GGG | - | chr4_1:53411553-53411572 | Msa0555410:CDS | 35.0% | |
| !! | TTTGTCCTGTTGGTGATTAA+TGG | - | chr4_1:53411743-53411762 | Msa0555410:intron | 35.0% |
| !! | AACCTTTTAGATTTGGCTTC+TGG | - | chr4_1:53411873-53411892 | Msa0555410:intron | 35.0% |
| !! | ACCTTTTAGATTTGGCTTCT+GGG | - | chr4_1:53411874-53411893 | Msa0555410:intron | 35.0% |
| CGATCAGAAGAAATAGTTGA+CGG | + | chr4_1:53412032-53412051 | None:intergenic | 35.0% | |
| AAGAAAAGAGAGGACAACAA+AGG | - | chr4_1:53412089-53412108 | Msa0555410:intron | 35.0% | |
| AGAAAAGAGAGGACAACAAA+GGG | - | chr4_1:53412090-53412109 | Msa0555410:intron | 35.0% | |
| ! | TTGCTATTACAGCTTAAGGA+TGG | - | chr4_1:53412140-53412159 | Msa0555410:intron | 35.0% |
| TGATACATCATCTTGTTCAG+CGG | + | chr4_1:53412222-53412241 | None:intergenic | 35.0% | |
| TGATGTATCACAGTATTTGC+TGG | - | chr4_1:53412232-53412251 | Msa0555410:intron | 35.0% | |
| TTTATGATGGCTTCTGCAAA+AGG | - | chr4_1:53412306-53412325 | Msa0555410:intron | 35.0% | |
| AAACAAGCTGTTCTTTCAGA+AGG | - | chr4_1:53412421-53412440 | Msa0555410:intron | 35.0% | |
| AGTTGAAATAATAAACCCGG+AGG | - | chr4_1:53412445-53412464 | Msa0555410:intron | 35.0% | |
| ACCCAAATATAATCATCCTC+CGG | + | chr4_1:53412464-53412483 | None:intergenic | 35.0% | |
| GGTTCATGATTACCATTTGA+TGG | - | chr4_1:53412481-53412500 | Msa0555410:intron | 35.0% | |
| AAACGCCTTCTTAGAAAAGT+TGG | + | chr4_1:53412512-53412531 | None:intergenic | 35.0% | |
| !!! | TTCTAAGAAGGCGTTTTAAC+AGG | - | chr4_1:53412516-53412535 | Msa0555410:intron | 35.0% |
| !!! | TCTAAGAAGGCGTTTTAACA+GGG | - | chr4_1:53412517-53412536 | Msa0555410:intron | 35.0% |
| !! | GCGTTTTAACAGGGTTAAAA+TGG | - | chr4_1:53412526-53412545 | Msa0555410:intron | 35.0% |
| !! | TATATCTCCGATGATGGAAA+GGG | + | chr4_1:53412569-53412588 | None:intergenic | 35.0% |
| !! | ATATATCTCCGATGATGGAA+AGG | + | chr4_1:53412570-53412589 | None:intergenic | 35.0% |
| TTCCATCATCGGAGATATAT+AGG | - | chr4_1:53412570-53412589 | Msa0555410:intron | 35.0% | |
| TATATAGGACTCTTCCTGTT+AGG | - | chr4_1:53412585-53412604 | Msa0555410:intron | 35.0% | |
| ATATAGGACTCTTCCTGTTA+GGG | - | chr4_1:53412586-53412605 | Msa0555410:intron | 35.0% | |
| ! | TCTAGAGTATCAGTCAAAGA+GGG | - | chr4_1:53412706-53412725 | Msa0555410:CDS | 35.0% |
| AGTATTAAGATCATGCCTGT+CGG | - | chr4_1:53412764-53412783 | Msa0555410:CDS | 35.0% | |
| TGAATCTGTTATGAGGATGT+CGG | - | chr4_1:53412805-53412824 | Msa0555410:CDS | 35.0% | |
| ! | GAAGGAAAAACCATTTTGCT+TGG | - | chr4_1:53412866-53412885 | Msa0555410:intron | 35.0% |
| ATCGTCAATACCAAGCAAAA+TGG | + | chr4_1:53412879-53412898 | None:intergenic | 35.0% | |
| !! | TTTGCTTGGTATTGACGATA+TGG | - | chr4_1:53412880-53412899 | Msa0555410:intron | 35.0% |
| AAATAGAAGAAAGTTGCAGC+AGG | - | chr4_1:53413047-53413066 | Msa0555410:intron | 35.0% | |
| AACACAATAGGTTCATAACC+AGG | + | chr4_1:53413094-53413113 | None:intergenic | 35.0% | |
| TGTTATTGTCACAGCTGTAA+GGG | - | chr4_1:53413171-53413190 | Msa0555410:intron | 35.0% | |
| TTCGCATTTGAACTTGATTC+AGG | + | chr4_1:53413253-53413272 | None:intergenic | 35.0% | |
| TTACAAGCATGCTCTTCTTT+GGG | + | chr4_1:53413279-53413298 | None:intergenic | 35.0% | |
| ATTACAAGCATGCTCTTCTT+TGG | + | chr4_1:53413280-53413299 | None:intergenic | 35.0% | |
| !! | CCCAACATCTTTTTCTAAGA+AGG | + | chr4_1:53413519-53413538 | None:intergenic | 35.0% |
| AGAAAAAGATGTTGGGGAAT+AGG | - | chr4_1:53413523-53413542 | Msa0555410:CDS | 35.0% | |
| !! | TAGCTTTGGATTTAGAGTTG+TGG | - | chr4_1:53413549-53413568 | Msa0555410:CDS | 35.0% |
| AAAGCTCTCAATTGATGCTA+TGG | - | chr4_1:53413591-53413610 | Msa0555410:CDS | 35.0% | |
| TTACAAGAGAGCAAAGAGTA+GGG | - | chr4_1:53413621-53413640 | Msa0555410:CDS | 35.0% | |
| ACCATCATAGTCCAACAAAA+TGG | + | chr4_1:53413647-53413666 | None:intergenic | 35.0% | |
| TAATAAGAGTCCAAGCAAAG+AGG | - | chr4_1:53413690-53413709 | Msa0555410:CDS | 35.0% | |
| ! | CAAAGAGGTCATATCTCTTT+TGG | - | chr4_1:53413705-53413724 | Msa0555410:CDS | 35.0% |
| !! | TGTTTTCATTGTTAGTGGAC+GGG | - | chr4_1:53413756-53413775 | Msa0555410:CDS | 35.0% |
| TACAGCACAAGTTCATAGTA+TGG | + | chr4_1:53413958-53413977 | None:intergenic | 35.0% | |
| CTGCATTCAGACAAGAAAAA+TGG | + | chr4_1:53413994-53414013 | None:intergenic | 35.0% | |
| AATAACTTCCTTTCATCCCT+AGG | - | chr4_1:53414022-53414041 | Msa0555410:CDS | 35.0% | |
| TGAGAACATCAGTTGTCTTA+TGG | - | chr4_1:53414188-53414207 | Msa0555410:CDS | 35.0% | |
| !!! | CAATTTGAGCATTTTTCAGG+TGG | - | chr4_1:53414407-53414426 | Msa0555410:CDS | 35.0% |
| ! | TGTGGTAATTGCTCTGATTT+TGG | - | chr4_1:53414454-53414473 | Msa0555410:CDS | 35.0% |
| ! | GTAATTGCTCTGATTTTGGA+TGG | - | chr4_1:53414458-53414477 | Msa0555410:CDS | 35.0% |
| ACTTTCCTTTCGTTCAATAC+TGG | + | chr4_1:53414536-53414555 | None:intergenic | 35.0% | |
| !! | GTCCTTTCTAAAATGCATTC+TGG | - | chr4_1:53414784-53414803 | Msa0555410:CDS | 35.0% |
| !! | CTCCAGAATGCATTTTAGAA+AGG | + | chr4_1:53414789-53414808 | None:intergenic | 35.0% |
| !! | CTAAAATGCATTCTGGAGTT+TGG | - | chr4_1:53414791-53414810 | Msa0555410:CDS | 35.0% |
| ! | AGCAATATTAAGGGCATGAT+TGG | - | chr4_1:53414851-53414870 | Msa0555410:CDS | 35.0% |
| AAGCCTGTGATAACAGAAAA+TGG | - | chr4_1:53414995-53415014 | Msa0555410:CDS | 35.0% | |
| AGCCTGTGATAACAGAAAAT+GGG | - | chr4_1:53414996-53415015 | Msa0555410:CDS | 35.0% | |
| ! | TTCCCATTTTCTGTTATCAC+AGG | + | chr4_1:53415001-53415020 | None:intergenic | 35.0% |
| GAAAATGTTCCATCTAACCA+TGG | - | chr4_1:53415378-53415397 | Msa0555410:CDS | 35.0% | |
| AATGTCAGATATCCAAGACA+AGG | + | chr4_1:53415427-53415446 | None:intergenic | 35.0% | |
| GTAAAAACAAACTGCTATGC+TGG | + | chr4_1:53415590-53415609 | None:intergenic | 35.0% | |
| ! | GAATCATCATTTTCCCAAAG+GGG | + | chr4_1:53415673-53415692 | None:intergenic | 35.0% |
| TCTTATACCATTTGCATTGC+AGG | - | chr4_1:53415694-53415713 | Msa0555410:intron | 35.0% | |
| AATGACTGAAAGTGACAAAC+AGG | - | chr4_1:53415757-53415776 | Msa0555410:intron | 35.0% | |
| TAGTTAGTAGTGCAATCTCA+AGG | - | chr4_1:53415834-53415853 | Msa0555410:intron | 35.0% | |
| TGGTAGAATAAACGATGAAG+AGG | + | chr4_1:53416233-53416252 | None:intergenic | 35.0% | |
| CAGTAGCAGATTGAGATTGA+AGG | + | chr4_1:53411210-53411229 | None:intergenic | 40.0% | |
| ACCATTGCTTCAATCCAACA+AGG | - | chr4_1:53411239-53411258 | Msa0555410:three_prime_UTR | 40.0% | |
| ACCTTGTTGGATTGAAGCAA+TGG | + | chr4_1:53411243-53411262 | None:intergenic | 40.0% | |
| TCCCAGAAGCCAAATCTAAA+AGG | + | chr4_1:53411878-53411897 | None:intergenic | 40.0% | |
| !! | ACAAAGGGTGGAGTTTTAGT+TGG | - | chr4_1:53412105-53412124 | Msa0555410:intron | 40.0% |
| !!! | GTGGAGTTTTAGTTGGAATG+AGG | - | chr4_1:53412112-53412131 | Msa0555410:intron | 40.0% |
| ! | GGATGGATTTCCAGAAGATA+TGG | - | chr4_1:53412157-53412176 | Msa0555410:intron | 40.0% |
| TGGATTTCCAGAAGATATGG+AGG | - | chr4_1:53412160-53412179 | Msa0555410:intron | 40.0% | |
| TACAGAACCTCCATATCTTC+TGG | + | chr4_1:53412170-53412189 | None:intergenic | 40.0% | |
| GATATGGAGGTTCTGTATGT+TGG | - | chr4_1:53412173-53412192 | Msa0555410:intron | 40.0% | |
| GATACATCATCTTGTTCAGC+GGG | + | chr4_1:53412221-53412240 | None:intergenic | 40.0% | |
| ! | TTTTCTGCCTCCTGATGTTT+TGG | - | chr4_1:53412277-53412296 | Msa0555410:intron | 40.0% |
| AAGTTTGCCAAAACATCAGG+AGG | + | chr4_1:53412287-53412306 | None:intergenic | 40.0% | |
| GCTTCTGCAAAAGGCAATTA+TGG | - | chr4_1:53412315-53412334 | Msa0555410:intron | 40.0% | |
| ACCCGGAGGATGATTATATT+TGG | - | chr4_1:53412459-53412478 | Msa0555410:intron | 40.0% | |
| CCCAAATATAATCATCCTCC+GGG | + | chr4_1:53412463-53412482 | None:intergenic | 40.0% | |
| CCCGGAGGATGATTATATTT+GGG | - | chr4_1:53412460-53412479 | Msa0555410:intron | 40.0% | |
| !! | TGCTGCCAACTTTTCTAAGA+AGG | - | chr4_1:53412504-53412523 | Msa0555410:intron | 40.0% |
| !! | ATATCTCCGATGATGGAAAG+GGG | + | chr4_1:53412568-53412587 | None:intergenic | 40.0% |
| GTCCTATATATCTCCGATGA+TGG | + | chr4_1:53412575-53412594 | None:intergenic | 40.0% | |
| TTTAGTATCTCCTCCCTAAC+AGG | + | chr4_1:53412602-53412621 | None:intergenic | 40.0% | |
| GACGAGCATAATCGAAAGTA+TGG | + | chr4_1:53412655-53412674 | None:intergenic | 40.0% | |
| ! | GTCTAGAGTATCAGTCAAAG+AGG | - | chr4_1:53412705-53412724 | Msa0555410:CDS | 40.0% |
| ! | CTAGAGTATCAGTCAAAGAG+GGG | - | chr4_1:53412707-53412726 | Msa0555410:CDS | 40.0% |
| ! | AAAGAGGGGTTATCTAGGAT+TGG | - | chr4_1:53412721-53412740 | Msa0555410:CDS | 40.0% |
| TAGGATTGGAATATTACGGG+AGG | - | chr4_1:53412735-53412754 | Msa0555410:CDS | 40.0% | |
| GTATTAAGATCATGCCTGTC+GGG | - | chr4_1:53412765-53412784 | Msa0555410:CDS | 40.0% | |
| GTCGGATTGAATCTGTTATG+AGG | - | chr4_1:53412798-53412817 | Msa0555410:CDS | 40.0% | |
| GAGCTCAAACAGCAATTTGA+AGG | - | chr4_1:53412848-53412867 | Msa0555410:CDS | 40.0% | |
| TTAACCCTGCTAGAGGTAAA+GGG | - | chr4_1:53412999-53413018 | Msa0555410:intron | 40.0% | |
| TGACAATAACACACTCAGCA+AGG | + | chr4_1:53413162-53413181 | None:intergenic | 40.0% | |
| ! | GTGTTATTGTCACAGCTGTA+AGG | - | chr4_1:53413170-53413189 | Msa0555410:intron | 40.0% |
| GTTTGTAGACAGGGAATATC+TGG | - | chr4_1:53413226-53413245 | Msa0555410:intron | 40.0% | |
| ! | CAACATTCCATGGATTGACA+CGG | + | chr4_1:53413345-53413364 | None:intergenic | 40.0% |
| ATGGAATGTTGAAGCAACTG+CGG | - | chr4_1:53413354-53413373 | Msa0555410:intron | 40.0% | |
| GAAGCCATTTCAATGAGTGA+TGG | - | chr4_1:53413388-53413407 | Msa0555410:intron | 40.0% | |
| CTCTCCATCACTCATTGAAA+TGG | + | chr4_1:53413395-53413414 | None:intergenic | 40.0% | |
| !! | TGCGGCATGAAAAGCATTAT+CGG | - | chr4_1:53413422-53413441 | Msa0555410:intron | 40.0% |
| ACGTAGTTTCTTGCAAGACA+TGG | - | chr4_1:53413477-53413496 | Msa0555410:CDS | 40.0% | |
| TTTCTTGCAAGACATGGAGA+GGG | - | chr4_1:53413483-53413502 | Msa0555410:CDS | 40.0% | |
| CTTACAAGAGAGCAAAGAGT+AGG | - | chr4_1:53413620-53413639 | Msa0555410:CDS | 40.0% | |
| !! | AAAGAGTAGGGCCATTTTGT+TGG | - | chr4_1:53413633-53413652 | Msa0555410:CDS | 40.0% |
| !! | GCCATTTTGTTGGACTATGA+TGG | - | chr4_1:53413643-53413662 | Msa0555410:CDS | 40.0% |
| AGAGATATGACCTCTTTGCT+TGG | + | chr4_1:53413703-53413722 | None:intergenic | 40.0% | |
| !! | GTTTTCATTGTTAGTGGACG+GGG | - | chr4_1:53413757-53413776 | Msa0555410:CDS | 40.0% |
| GTAGGGATAGCTTAAGTGAA+TGG | - | chr4_1:53413779-53413798 | Msa0555410:CDS | 40.0% | |
| CAGAACATGGATACTTCTTG+AGG | - | chr4_1:53413833-53413852 | Msa0555410:CDS | 40.0% | |
| ATAGCTCTTGTTCAGACCTA+GGG | + | chr4_1:53414041-53414060 | None:intergenic | 40.0% | |
| AATAGCTCTTGTTCAGACCT+AGG | + | chr4_1:53414042-53414061 | None:intergenic | 40.0% | |
| TCTGAACAAGAGCTATTACG+TGG | - | chr4_1:53414045-53414064 | Msa0555410:CDS | 40.0% | |
| CTGAACAAGAGCTATTACGT+GGG | - | chr4_1:53414046-53414065 | Msa0555410:CDS | 40.0% | |
| TGAACAAGAGCTATTACGTG+GGG | - | chr4_1:53414047-53414066 | Msa0555410:CDS | 40.0% | |
| ACAACTGATGTTCTCAACTC+CGG | + | chr4_1:53414184-53414203 | None:intergenic | 40.0% | |
| TTGATCACTTCCTCCATGTA+TGG | - | chr4_1:53414267-53414286 | Msa0555410:CDS | 40.0% | |
| GATCAATGCAGATCCATACA+TGG | + | chr4_1:53414283-53414302 | None:intergenic | 40.0% | |
| CTATATACAGAGGCAACTGA+TGG | - | chr4_1:53414508-53414527 | Msa0555410:CDS | 40.0% | |
| ! | TGGTTCCAGTATTGAACGAA+AGG | - | chr4_1:53414528-53414547 | Msa0555410:CDS | 40.0% |
| !! | TGAACGAAAGGAAAGTGCTT+TGG | - | chr4_1:53414540-53414559 | Msa0555410:CDS | 40.0% |
| !! | GAAAGGAAAGTGCTTTGGTT+TGG | - | chr4_1:53414545-53414564 | Msa0555410:CDS | 40.0% |
| !! | TGCTTTGGTTTGGCAATACA+GGG | - | chr4_1:53414555-53414574 | Msa0555410:CDS | 40.0% |
| AGAAGATCCAAAACCAAGGT+CGG | + | chr4_1:53414584-53414603 | None:intergenic | 40.0% | |
| ! | TTTTGGATCTTCTCAGGCTA+AGG | - | chr4_1:53414591-53414610 | Msa0555410:CDS | 40.0% |
| GATAAACTGACCACTCTTTG+CGG | + | chr4_1:53414662-53414681 | None:intergenic | 40.0% | |
| AGAAATCCAAAAGGTCCCTA+GGG | - | chr4_1:53415035-53415054 | Msa0555410:CDS | 40.0% | |
| GACTTCGAAAACTCGAAACA+TGG | - | chr4_1:53415186-53415205 | Msa0555410:CDS | 40.0% | |
| GAAACATGGTGAAAGCAAGT+TGG | - | chr4_1:53415200-53415219 | Msa0555410:CDS | 40.0% | |
| CAACAAATTCCCGACAACTA+AGG | + | chr4_1:53415284-53415303 | None:intergenic | 40.0% | |
| ATGTCTAAAGGAACAACAGG+AGG | + | chr4_1:53415492-53415511 | None:intergenic | 40.0% | |
| TTATTGTGCTACAACCCCTT+TGG | - | chr4_1:53415656-53415675 | Msa0555410:intron | 40.0% | |
| TATTGTGCTACAACCCCTTT+GGG | - | chr4_1:53415657-53415676 | Msa0555410:intron | 40.0% | |
| !! | AGCAAATACAGAAGCATTGG+AGG | + | chr4_1:53415870-53415889 | None:intergenic | 40.0% |
| ! | GCAAGCAAATACAGAAGCAT+TGG | + | chr4_1:53415873-53415892 | None:intergenic | 40.0% |
| TGCTTCTGTATTTGCTTGCA+CGG | - | chr4_1:53415874-53415893 | Msa0555410:intron | 40.0% | |
| TCACCATGCATAGAAGAATC+TGG | - | chr4_1:53415989-53416008 | Msa0555410:intron | 40.0% | |
| CACCATGCATAGAAGAATCT+GGG | - | chr4_1:53415990-53416009 | Msa0555410:intron | 40.0% | |
| ACCATGCATAGAAGAATCTG+GGG | - | chr4_1:53415991-53416010 | Msa0555410:intron | 40.0% | |
| CAGTCAAGTTTGGATTCAAG+AGG | + | chr4_1:53416020-53416039 | None:intergenic | 40.0% | |
| CTTGAATCCAAACTTGACTG+AGG | - | chr4_1:53416020-53416039 | Msa0555410:intron | 40.0% | |
| ACTGAGGTTTCTCCTGATTT+AGG | - | chr4_1:53416036-53416055 | Msa0555410:five_prime_UTR | 40.0% | |
| AGTTTATGCTCTGACCCTTC+AGG | + | chr4_1:53411570-53411589 | None:intergenic | 45.0% | |
| ! | TTTGGCTTCTGGGAATTTCC+CGG | - | chr4_1:53411884-53411903 | Msa0555410:intron | 45.0% |
| GGAGGGAGTTTAAAGAACGA+AGG | - | chr4_1:53411925-53411944 | Msa0555410:intron | 45.0% | |
| GGGAGTTTAAAGAACGAAGG+CGG | - | chr4_1:53411928-53411947 | Msa0555410:intron | 45.0% | |
| !! | CTCAGAGGTTGATGATGATC+AGG | - | chr4_1:53411983-53412002 | Msa0555410:intron | 45.0% |
| AAAGAGAGGACAACAAAGGG+TGG | - | chr4_1:53412093-53412112 | Msa0555410:intron | 45.0% | |
| ACATCAGGAGGCAGAAAAGT+GGG | + | chr4_1:53412275-53412294 | None:intergenic | 45.0% | |
| AACATCAGGAGGCAGAAAAG+TGG | + | chr4_1:53412276-53412295 | None:intergenic | 45.0% | |
| GAACATAGGCTTCCCACAAA+TGG | + | chr4_1:53412397-53412416 | None:intergenic | 45.0% | |
| TTTGTGGGAAGCCTATGTTC+TGG | - | chr4_1:53412397-53412416 | Msa0555410:intron | 45.0% | |
| ! | CAGCTTGTTTGCCAGAACAT+AGG | + | chr4_1:53412411-53412430 | None:intergenic | 45.0% |
| AAGTTGGCAGCACCATCAAA+TGG | + | chr4_1:53412496-53412515 | None:intergenic | 45.0% | |
| CAGTCAAAGAGGGGTTATCT+AGG | - | chr4_1:53412716-53412735 | Msa0555410:CDS | 45.0% | |
| TGTTATGAGGATGTCGGATG+AGG | - | chr4_1:53412811-53412830 | Msa0555410:CDS | 45.0% | |
| TGCTGAAACAACACCCCAAA+TGG | - | chr4_1:53412948-53412967 | Msa0555410:intron | 45.0% | |
| AAACAACACCCCAAATGGCA+AGG | - | chr4_1:53412953-53412972 | Msa0555410:intron | 45.0% | |
| ! | ACAGCTCTTCCTTGCCATTT+GGG | + | chr4_1:53412965-53412984 | None:intergenic | 45.0% |
| AACAGCTCTTCCTTGCCATT+TGG | + | chr4_1:53412966-53412985 | None:intergenic | 45.0% | |
| CTCTAGCAGGGTTAACTATC+TGG | + | chr4_1:53412994-53413013 | None:intergenic | 45.0% | |
| CAGATAGTTAACCCTGCTAG+AGG | - | chr4_1:53412992-53413011 | Msa0555410:intron | 45.0% | |
| GTTAACCCTGCTAGAGGTAA+AGG | - | chr4_1:53412998-53413017 | Msa0555410:intron | 45.0% | |
| GTATCCCTTTACCTCTAGCA+GGG | + | chr4_1:53413006-53413025 | None:intergenic | 45.0% | |
| TGTATCCCTTTACCTCTAGC+AGG | + | chr4_1:53413007-53413026 | None:intergenic | 45.0% | |
| ! | AGCAGGATCAACAGAGTGTT+TGG | - | chr4_1:53413064-53413083 | Msa0555410:intron | 45.0% |
| ACACTCAGCAAGGCTGTAAT+AGG | + | chr4_1:53413152-53413171 | None:intergenic | 45.0% | |
| ATTGTCACAGCTGTAAGGGA+TGG | - | chr4_1:53413175-53413194 | Msa0555410:intron | 45.0% | |
| TTGTCACAGCTGTAAGGGAT+GGG | - | chr4_1:53413176-53413195 | Msa0555410:intron | 45.0% | |
| GCAGTTGCTTCAACATTCCA+TGG | + | chr4_1:53413355-53413374 | None:intergenic | 45.0% | |
| GTTTCTTGCAAGACATGGAG+AGG | - | chr4_1:53413482-53413501 | Msa0555410:CDS | 45.0% | |
| TGGGGAATAGGTCTTAGCTT+TGG | - | chr4_1:53413535-53413554 | Msa0555410:CDS | 45.0% | |
| CTTGGAATTGCTGCAGAACA+TGG | - | chr4_1:53413820-53413839 | Msa0555410:CDS | 45.0% | |
| TGTTCAGACCTAGGGATGAA+AGG | + | chr4_1:53414033-53414052 | None:intergenic | 45.0% | |
| CAATGCAGATCCATACATGG+AGG | + | chr4_1:53414280-53414299 | None:intergenic | 45.0% | |
| !!! | TTTTTCAGGTGGTCCCAAGA+CGG | - | chr4_1:53414418-53414437 | Msa0555410:CDS | 45.0% |
| AGTTTCCCATTCACCGTCTT+GGG | + | chr4_1:53414434-53414453 | None:intergenic | 45.0% | |
| AAGTTTCCCATTCACCGTCT+TGG | + | chr4_1:53414435-53414454 | None:intergenic | 45.0% | |
| !! | GTGCTTTGGTTTGGCAATAC+AGG | - | chr4_1:53414554-53414573 | Msa0555410:CDS | 45.0% |
| CCTGAGAAGATCCAAAACCA+AGG | + | chr4_1:53414588-53414607 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTGGATCTTCTC+AGG | - | chr4_1:53414585-53414604 | Msa0555410:CDS | 45.0% |
| CAGAAATCCAAAAGGTCCCT+AGG | - | chr4_1:53415034-53415053 | Msa0555410:CDS | 45.0% | |
| CTGAAACCAATCAGACCCTA+GGG | + | chr4_1:53415053-53415072 | None:intergenic | 45.0% | |
| ! | TCTGAAACCAATCAGACCCT+AGG | + | chr4_1:53415054-53415073 | None:intergenic | 45.0% |
| GCTAGTAGGTCCTTAGTTGT+CGG | - | chr4_1:53415271-53415290 | Msa0555410:CDS | 45.0% | |
| CTAGTAGGTCCTTAGTTGTC+GGG | - | chr4_1:53415272-53415291 | Msa0555410:CDS | 45.0% | |
| GTTCTTGGTCCATGGTTAGA+TGG | + | chr4_1:53415390-53415409 | None:intergenic | 45.0% | |
| TAGATCAGGTTCTTGGTCCA+TGG | + | chr4_1:53415398-53415417 | None:intergenic | 45.0% | |
| CTCACATCCTGCAATGCAAA+TGG | + | chr4_1:53415704-53415723 | None:intergenic | 45.0% | |
| TGTGAGCAAAGGCTTAGTTG+CGG | - | chr4_1:53415718-53415737 | Msa0555410:intron | 45.0% | |
| ATCTGTCATCACCAACACAC+AGG | + | chr4_1:53415793-53415812 | None:intergenic | 45.0% | |
| ! | TGGTGATGACAGATCAGATG+AGG | - | chr4_1:53415799-53415818 | Msa0555410:intron | 45.0% |
| TCTGTATTTGCTTGCACGGT+TGG | - | chr4_1:53415878-53415897 | Msa0555410:intron | 45.0% | |
| TCCCCAGATTCTTCTATGCA+TGG | + | chr4_1:53415995-53416014 | None:intergenic | 45.0% | |
| GGAGAAACCTCAGTCAAGTT+TGG | + | chr4_1:53416030-53416049 | None:intergenic | 45.0% | |
| ! | TTCTGGGAATTTCCCGGCAA+TGG | - | chr4_1:53411890-53411909 | Msa0555410:intron | 50.0% |
| TCTGGGAATTTCCCGGCAAT+GGG | - | chr4_1:53411891-53411910 | Msa0555410:intron | 50.0% | |
| GAATTTCCCGGCAATGGGAT+CGG | - | chr4_1:53411896-53411915 | Msa0555410:intron | 50.0% | |
| AATTTCCCGGCAATGGGATC+GGG | - | chr4_1:53411897-53411916 | Msa0555410:intron | 50.0% | |
| !! | TCAACCTCTGAGACAATCCC+CGG | + | chr4_1:53411975-53411994 | None:intergenic | 50.0% |
| CATCAGGAGGCAGAAAAGTG+GGG | + | chr4_1:53412274-53412293 | None:intergenic | 50.0% | |
| ACAAATGGCGATCAAAGCGG+TGG | + | chr4_1:53412382-53412401 | None:intergenic | 50.0% | |
| ACCGCTTTGATCGCCATTTG+TGG | - | chr4_1:53412381-53412400 | Msa0555410:intron | 50.0% | |
| CCCACAAATGGCGATCAAAG+CGG | + | chr4_1:53412385-53412404 | None:intergenic | 50.0% | |
| CCGCTTTGATCGCCATTTGT+GGG | - | chr4_1:53412382-53412401 | Msa0555410:intron | 50.0% | |
| GCATAGCCCCTTTCCATCAT+CGG | - | chr4_1:53412559-53412578 | Msa0555410:intron | 50.0% | |
| TAGGACTCTTCCTGTTAGGG+AGG | - | chr4_1:53412589-53412608 | Msa0555410:intron | 50.0% | |
| TTCCTGCTGCAGTCGTATGT+TGG | - | chr4_1:53412682-53412701 | Msa0555410:CDS | 50.0% | |
| TCCTGCTGCAGTCGTATGTT+GGG | - | chr4_1:53412683-53412702 | Msa0555410:CDS | 50.0% | |
| ATGCCTGTCGGGATTCACAT+GGG | - | chr4_1:53412776-53412795 | Msa0555410:CDS | 50.0% | |
| ! | GATGTCGGATGAGGAGTGTA+AGG | - | chr4_1:53412820-53412839 | Msa0555410:CDS | 50.0% |
| ! | GGATGAGGAGTGTAAGGCAA+GGG | - | chr4_1:53412826-53412845 | Msa0555410:CDS | 50.0% |
| ! | CAGCTCTTCCTTGCCATTTG+GGG | + | chr4_1:53412964-53412983 | None:intergenic | 50.0% |
| ! | AACAGAGTGTTTGGACGACC+TGG | - | chr4_1:53413073-53413092 | Msa0555410:intron | 50.0% |
| GGTGTTCTCCATCGCTTAGT+GGG | - | chr4_1:53413314-53413333 | Msa0555410:intron | 50.0% | |
| GTGTTCTCCATCGCTTAGTG+GGG | - | chr4_1:53413315-53413334 | Msa0555410:intron | 50.0% | |
| GAATGTTGAAGCAACTGCGG+AGG | - | chr4_1:53413357-53413376 | Msa0555410:intron | 50.0% | |
| ! | GTGATGGAGAGAAGCAGTTG+CGG | - | chr4_1:53413404-53413423 | Msa0555410:intron | 50.0% |
| GTATGTCAGCACTCATGACG+TGG | - | chr4_1:53413444-53413463 | Msa0555410:CDS | 50.0% | |
| ! | TCATTGTTAGTGGACGGGGT+AGG | - | chr4_1:53413761-53413780 | Msa0555410:CDS | 50.0% |
| ! | CATTGTTAGTGGACGGGGTA+GGG | - | chr4_1:53413762-53413781 | Msa0555410:CDS | 50.0% |
| TGTCTTATGGCAGTCATGCC+AGG | - | chr4_1:53414201-53414220 | Msa0555410:CDS | 50.0% | |
| GTCTTATGGCAGTCATGCCA+GGG | - | chr4_1:53414202-53414221 | Msa0555410:CDS | 50.0% | |
| ACTCAACAGGAACTTCTCCC+TGG | + | chr4_1:53414222-53414241 | None:intergenic | 50.0% | |
| GACGGTGAATGGGAAACTTG+TGG | - | chr4_1:53414436-53414455 | Msa0555410:CDS | 50.0% | |
| TATCGTTGAAGTGAAGCCCC+AGG | - | chr4_1:53414678-53414697 | Msa0555410:CDS | 50.0% | |
| ! | ATCAGACCCTAGGGACCTTT+TGG | + | chr4_1:53415044-53415063 | None:intergenic | 50.0% |
| AAAGGTCCCTAGGGTCTGAT+TGG | - | chr4_1:53415044-53415063 | Msa0555410:CDS | 50.0% | |
| GCATTGCAGGATGTGAGCAA+AGG | - | chr4_1:53415707-53415726 | Msa0555410:intron | 50.0% | |
| ! | GCTGACTTTGTCCTGTGTGT+TGG | - | chr4_1:53415779-53415798 | Msa0555410:intron | 50.0% |
| ATTTCCCGGCAATGGGATCG+GGG | - | chr4_1:53411898-53411917 | Msa0555410:intron | 55.0% | |
| !! | CAACCTCTGAGACAATCCCC+GGG | + | chr4_1:53411974-53411993 | None:intergenic | 55.0% |
| ACCCAACATACGACTGCAGC+AGG | + | chr4_1:53412687-53412706 | None:intergenic | 55.0% | |
| CATGCCTGTCGGGATTCACA+TGG | - | chr4_1:53412775-53412794 | Msa0555410:CDS | 55.0% | |
| CTGTCGGGATTCACATGGGT+CGG | - | chr4_1:53412780-53412799 | Msa0555410:CDS | 55.0% | |
| ! | CGGATGAGGAGTGTAAGGCA+AGG | - | chr4_1:53412825-53412844 | Msa0555410:CDS | 55.0% |
| GGGTGTTCTCCATCGCTTAG+TGG | - | chr4_1:53413313-53413332 | Msa0555410:intron | 55.0% | |
| GGGCTATCCGTGTCAATCCA+TGG | - | chr4_1:53413335-53413354 | Msa0555410:intron | 55.0% | |
| GCACTCATGACGTGGCTTAC+TGG | - | chr4_1:53413452-53413471 | Msa0555410:CDS | 55.0% | |
| AGACATGGAGAGGGCTTGCA+CGG | - | chr4_1:53413492-53413511 | Msa0555410:CDS | 55.0% | |
| GTGGTCCCAAGACGGTGAAT+GGG | - | chr4_1:53414426-53414445 | Msa0555410:CDS | 55.0% | |
| CAATACAGGGATGCCGACCT+TGG | - | chr4_1:53414568-53414587 | Msa0555410:CDS | 55.0% | |
| ! | AGGGATGCCGACCTTGGTTT+TGG | - | chr4_1:53414574-53414593 | Msa0555410:CDS | 55.0% |
| CTTTGCGGCAACAGGCTCAT+TGG | + | chr4_1:53414647-53414666 | None:intergenic | 55.0% | |
| TGACCACTCTTTGCGGCAAC+AGG | + | chr4_1:53414655-53414674 | None:intergenic | 55.0% | |
| AATGGGATCGGGGTTGGGGA+GGG | - | chr4_1:53411908-53411927 | Msa0555410:intron | 60.0% | |
| AAGAACGAAGGCGGATGCCG+AGG | - | chr4_1:53411937-53411956 | Msa0555410:intron | 60.0% | |
| AGAACGAAGGCGGATGCCGA+GGG | - | chr4_1:53411938-53411957 | Msa0555410:intron | 60.0% | |
| GCCGAGGGTTATGAGTGTCC+CGG | - | chr4_1:53411953-53411972 | Msa0555410:intron | 60.0% | |
| CCCGGGACACTCATAACCCT+CGG | + | chr4_1:53411957-53411976 | None:intergenic | 60.0% | |
| CCGAGGGTTATGAGTGTCCC+GGG | - | chr4_1:53411954-53411973 | Msa0555410:intron | 60.0% | |
| CGAGGGTTATGAGTGTCCCG+GGG | - | chr4_1:53411955-53411974 | Msa0555410:intron | 60.0% | |
| TGTCCCGGGGATTGTCTCAG+AGG | - | chr4_1:53411968-53411987 | Msa0555410:intron | 60.0% | |
| CGACCCATGTGAATCCCGAC+AGG | + | chr4_1:53412782-53412801 | None:intergenic | 60.0% | |
| CGGATAGCCCCACTAAGCGA+TGG | + | chr4_1:53413325-53413344 | None:intergenic | 60.0% | |
| GGTGGTCCCAAGACGGTGAA+TGG | - | chr4_1:53414425-53414444 | Msa0555410:CDS | 60.0% | |
| GAGCCTGTTGCCGCAAAGAG+TGG | - | chr4_1:53414649-53414668 | Msa0555410:CDS | 60.0% | |
| CCAACCCCGATCCCATTGCC+GGG | + | chr4_1:53411905-53411924 | None:intergenic | 65.0% | |
| CCCAACCCCGATCCCATTGC+CGG | + | chr4_1:53411906-53411925 | None:intergenic | 65.0% | |
| CCGGCAATGGGATCGGGGTT+GGG | - | chr4_1:53411903-53411922 | Msa0555410:intron | 65.0% | |
| CGGCAATGGGATCGGGGTTG+GGG | - | chr4_1:53411904-53411923 | Msa0555410:intron | 65.0% | |
| CAATGGGATCGGGGTTGGGG+AGG | - | chr4_1:53411907-53411926 | Msa0555410:intron | 65.0% | |
| CCCGGCAATGGGATCGGGGT+TGG | - | chr4_1:53411902-53411921 | Msa0555410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53411026 | 53416269 | 53411026 | ID=Msa0555410;Name=Msa0555410 |
| chr4_1 | mRNA | 53411026 | 53416269 | 53411026 | ID=Msa0555410-mRNA-1;Parent=Msa0555410;Name=Msa0555410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=282|1|1|1|0.66|0.5|4|245|861 |
| chr4_1 | exon | 53411026 | 53411579 | 53411026 | ID=Msa0555410-mRNA-1:exon:15526;Parent=Msa0555410-mRNA-1 |
| chr4_1 | exon | 53412596 | 53412869 | 53412596 | ID=Msa0555410-mRNA-1:exon:15525;Parent=Msa0555410-mRNA-1 |
| chr4_1 | exon | 53413441 | 53415490 | 53413441 | ID=Msa0555410-mRNA-1:exon:15524;Parent=Msa0555410-mRNA-1 |
| chr4_1 | exon | 53416035 | 53416269 | 53416035 | ID=Msa0555410-mRNA-1:exon:15523;Parent=Msa0555410-mRNA-1 |
| chr4_1 | five_prime_UTR | 53416035 | 53416269 | 53416035 | ID=Msa0555410-mRNA-1:five_prime_utr;Parent=Msa0555410-mRNA-1 |
| chr4_1 | five_prime_UTR | 53415444 | 53415490 | 53415444 | ID=Msa0555410-mRNA-1:five_prime_utr;Parent=Msa0555410-mRNA-1 |
| chr4_1 | CDS | 53413441 | 53415443 | 53413441 | ID=Msa0555410-mRNA-1:cds;Parent=Msa0555410-mRNA-1 |
| chr4_1 | CDS | 53412596 | 53412869 | 53412596 | ID=Msa0555410-mRNA-1:cds;Parent=Msa0555410-mRNA-1 |
| chr4_1 | CDS | 53411271 | 53411579 | 53411271 | ID=Msa0555410-mRNA-1:cds;Parent=Msa0555410-mRNA-1 |
| chr4_1 | three_prime_UTR | 53411026 | 53411270 | 53411026 | ID=Msa0555410-mRNA-1:three_prime_utr;Parent=Msa0555410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
