Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613950 | XP_003608402.1 | 93.713 | 334 | 20 | 1 | 1 | 333 | 1 | 334 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613950 | sp|Q8H1G0|GAT28_ARATH | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 4.13e-61 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0613950 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613950 | Msa0697110 | 0.835413 | 1.703074e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613950 | MtrunA17_Chr4g0049741 | 93.713 | 334 | 20 | 1 | 1 | 333 | 1 | 334 | 0.0 | 650 |
| Msa0613950 | MtrunA17_Chr3g0132751 | 46.512 | 301 | 132 | 8 | 40 | 318 | 66 | 359 | 1.87e-75 | 236 |
| Msa0613950 | MtrunA17_Chr3g0132761 | 44.697 | 264 | 132 | 7 | 5 | 268 | 33 | 282 | 9.06e-57 | 186 |
| Msa0613950 | MtrunA17_Chr5g0427661 | 54.891 | 184 | 64 | 7 | 43 | 219 | 74 | 245 | 4.82e-56 | 184 |
| Msa0613950 | MtrunA17_Chr4g0002231 | 48.387 | 93 | 41 | 2 | 126 | 211 | 43 | 135 | 1.79e-20 | 86.3 |
| Msa0613950 | MtrunA17_Chr3g0102511 | 47.115 | 104 | 40 | 6 | 140 | 235 | 11 | 107 | 1.98e-16 | 80.1 |
| Msa0613950 | MtrunA17_Chr3g0091641 | 63.830 | 47 | 17 | 0 | 103 | 149 | 493 | 539 | 1.46e-12 | 68.6 |
| Msa0613950 | MtrunA17_Chr4g0002251 | 52.727 | 55 | 18 | 1 | 177 | 231 | 9 | 55 | 1.60e-12 | 62.4 |
| Msa0613950 | MtrunA17_Chr4g0061021 | 64.444 | 45 | 16 | 0 | 104 | 148 | 501 | 545 | 8.18e-12 | 66.2 |
| Msa0613950 | MtrunA17_Chr4g0002261 | 72.093 | 43 | 11 | 1 | 108 | 149 | 24 | 66 | 8.20e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613950 | AT1G51600.1 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 4.20e-62 | 200 |
| Msa0613950 | AT1G51600.2 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 4.20e-62 | 200 |
| Msa0613950 | AT3G21175.2 | 56.316 | 190 | 73 | 4 | 38 | 220 | 74 | 260 | 1.55e-60 | 196 |
| Msa0613950 | AT3G21175.1 | 55.789 | 190 | 76 | 3 | 38 | 220 | 74 | 262 | 1.81e-60 | 196 |
| Msa0613950 | AT4G24470.1 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 2.67e-50 | 170 |
| Msa0613950 | AT4G24470.2 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 2.67e-50 | 170 |
| Msa0613950 | AT4G24470.3 | 46.977 | 215 | 97 | 6 | 19 | 230 | 63 | 263 | 2.96e-50 | 170 |
| Msa0613950 | AT3G21175.3 | 57.018 | 114 | 46 | 2 | 38 | 151 | 74 | 184 | 5.71e-33 | 122 |
Find 94 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAGACAAACTATTTC+TGG | 0.191039 | 4_2:-62871144 | Msa0613950:three_prime_UTR |
| TTTGAAACTCACGTGGATTC+TGG | 0.203921 | 4_2:+62873443 | None:intergenic |
| CGGGCTCATGTGGGCAAATA+AGG | 0.235102 | 4_2:-62873222 | Msa0613950:intron |
| CAAGCATTGCATAGAGTTCT+TGG | 0.242885 | 4_2:+62873245 | None:intergenic |
| TTCAACTAACTCTAGACTTT+TGG | 0.255714 | 4_2:-62871179 | Msa0613950:three_prime_UTR |
| ACCTCTCAGCAAGCTCTTTA+CGG | 0.268811 | 4_2:+62874054 | None:intergenic |
| ACTGAATTTGAGATTCCTTT+AGG | 0.291144 | 4_2:-62871410 | Msa0613950:CDS |
| AGCAAAACTGTCGGGACATT+TGG | 0.300350 | 4_2:-62874288 | Msa0613950:CDS |
| ATTCCAATATGAGGATTTAC+TGG | 0.333408 | 4_2:-62871274 | Msa0613950:CDS |
| TCCGTGAAAGCTTTGAATTA+CGG | 0.336575 | 4_2:+62874150 | None:intergenic |
| TTGGCAAAGGCTTTGTTTCA+TGG | 0.339952 | 4_2:+62872231 | None:intergenic |
| GCTGTATTGTTACTCTTAGA+TGG | 0.341296 | 4_2:-62874355 | Msa0613950:CDS |
| GGAGATCTGCATCACTTGTT+AGG | 0.347795 | 4_2:-62874130 | Msa0613950:CDS |
| GAACTCTATGCAATGCTTGC+GGG | 0.368924 | 4_2:-62873241 | Msa0613950:CDS |
| TTGAAACTCACGTGGATTCT+GGG | 0.390836 | 4_2:+62873444 | None:intergenic |
| TGGCAAAGGCTTTGTTTCAT+GGG | 0.392126 | 4_2:+62872232 | None:intergenic |
| GCAATGCTTGCGGGCTCATG+TGG | 0.395096 | 4_2:-62873232 | Msa0613950:CDS |
| GCCGGTCCTCGACGCATTAC+CGG | 0.398091 | 4_2:+62873272 | None:intergenic |
| AGGGTTACAGGATAATATTA+TGG | 0.399343 | 4_2:-62871456 | Msa0613950:intron |
| GCAAAACTGTCGGGACATTT+GGG | 0.401442 | 4_2:-62874287 | Msa0613950:intron |
| CAAAATTAAATCCGGTTACA+TGG | 0.403929 | 4_2:+62871056 | None:intergenic |
| GAACTCACCATTTCCTTTGA+AGG | 0.410545 | 4_2:-62874895 | Msa0613950:CDS |
| TGGAAACTAATTTGCGGCTC+TGG | 0.413136 | 4_2:-62871202 | Msa0613950:three_prime_UTR |
| CAAGAGCATTATTCTCCACT+TGG | 0.415392 | 4_2:+62871638 | None:intergenic |
| AGATGCCAGCATTGTGGAAT+TGG | 0.421996 | 4_2:-62873308 | Msa0613950:CDS |
| ACACTATACAAAATTAAATC+CGG | 0.426016 | 4_2:+62871048 | None:intergenic |
| CAGCCAGTAAATCCTCATAT+TGG | 0.426340 | 4_2:+62871271 | None:intergenic |
| CCCTTCCGTTACGCCAGAAA+AGG | 0.437686 | 4_2:-62874857 | Msa0613950:intron |
| AGAAAATTCATGTGCTGCAC+AGG | 0.441655 | 4_2:-62872412 | Msa0613950:CDS |
| ACCTGCTCAATTATCATCTC+AGG | 0.443550 | 4_2:+62872191 | None:intergenic |
| TATCATCTCAGGTGACTGTC+TGG | 0.447979 | 4_2:+62872202 | None:intergenic |
| GAGTGGAACAGAAGCGGTAA+TGG | 0.454383 | 4_2:+62874930 | None:intergenic |
| TCCGTAATTCAAAGCTTTCA+CGG | 0.456528 | 4_2:-62874151 | Msa0613950:CDS |
| ATGCTGAATTCGTCTGAGAA+TGG | 0.460337 | 4_2:-62875015 | Msa0613950:CDS |
| TGCTGAATTCGTCTGAGAAT+GGG | 0.470907 | 4_2:-62875014 | Msa0613950:CDS |
| AATAGGATGCAACGGAAGAA+TGG | 0.473196 | 4_2:-62873539 | Msa0613950:intron |
| GGCAAAGGCTTTGTTTCATG+GGG | 0.473835 | 4_2:+62872233 | None:intergenic |
| AACCTCGCCTTCAAAGGAAA+TGG | 0.478631 | 4_2:+62874888 | None:intergenic |
| CAGTTCTCCTGCTGAAAACC+AGG | 0.478700 | 4_2:-62873489 | Msa0613950:CDS |
| AGTGGAACAGAAGCGGTAAT+GGG | 0.481649 | 4_2:+62874931 | None:intergenic |
| ATTGTTACTCTTAGATGGGC+AGG | 0.482284 | 4_2:-62874350 | Msa0613950:CDS |
| ACCTGAGATGATAATTGAGC+AGG | 0.486485 | 4_2:-62872192 | Msa0613950:intron |
| TGCTCTTGATCTGCACGAGC+AGG | 0.491928 | 4_2:-62871623 | Msa0613950:intron |
| ATATTGATGATTCCAATATG+AGG | 0.497535 | 4_2:-62871283 | Msa0613950:CDS |
| ACAGAAGCGGTAATGGGTTG+AGG | 0.500608 | 4_2:+62874937 | None:intergenic |
| GAGTGCTGTTGCTAGAATCC+TGG | 0.502422 | 4_2:+62873471 | None:intergenic |
| TTGCACCAATTCCACAATGC+TGG | 0.502619 | 4_2:+62873303 | None:intergenic |
| CTGAGAGATCTCGGCAAAGC+AGG | 0.503407 | 4_2:-62872920 | Msa0613950:CDS |
| TTCGGTGCAGCAAAACTGTC+GGG | 0.506228 | 4_2:-62874296 | Msa0613950:CDS |
| TGGACAGTTTGCATCATTGA+AGG | 0.506543 | 4_2:-62873519 | Msa0613950:CDS |
| GCTCTTTACGGCAAGTGTAC+CGG | 0.507579 | 4_2:+62874066 | None:intergenic |
| AACATAAACCTCGCCTTCAA+AGG | 0.517160 | 4_2:+62874882 | None:intergenic |
| TCGTGGTGGAAACTAATTTG+CGG | 0.519847 | 4_2:-62871208 | Msa0613950:three_prime_UTR |
| TCCGGTAATGCGTCGAGGAC+CGG | 0.522308 | 4_2:-62873273 | Msa0613950:CDS |
| GGTGACTGTCTGGCATCCAT+TGG | 0.523909 | 4_2:+62872212 | None:intergenic |
| CACCATTTCCTTTGAAGGCG+AGG | 0.528900 | 4_2:-62874890 | Msa0613950:CDS |
| CTGTATTGTTACTCTTAGAT+GGG | 0.529102 | 4_2:-62874354 | Msa0613950:CDS |
| ACCTGATCATCAAAACCTAA+AGG | 0.529543 | 4_2:+62871395 | None:intergenic |
| TTCGTCTGAGAATGGGTCAA+TGG | 0.534504 | 4_2:-62875007 | Msa0613950:CDS |
| AAAGCTTTGAATTACGGAAA+GGG | 0.538823 | 4_2:+62874156 | None:intergenic |
| ACCACGAACAAACCATGCCT+TGG | 0.552748 | 4_2:+62871224 | None:intergenic |
| AGCTACATTGGTACAGTGCA+TGG | 0.556675 | 4_2:+62874984 | None:intergenic |
| CATAGAGTTCTTGGACCAGC+CGG | 0.557209 | 4_2:+62873254 | None:intergenic |
| AAGGGAACACTGAGAGATCT+CGG | 0.561679 | 4_2:-62872929 | Msa0613950:CDS |
| GAAAGCTTTGAATTACGGAA+AGG | 0.561743 | 4_2:+62874155 | None:intergenic |
| TTTCGGTGCAGCAAAACTGT+CGG | 0.562482 | 4_2:-62874297 | Msa0613950:CDS |
| TGAAACAAAGCCTTTGCCAA+TGG | 0.564941 | 4_2:-62872228 | Msa0613950:CDS |
| AAAATTAAATCCGGTTACAT+GGG | 0.565035 | 4_2:+62871057 | None:intergenic |
| ACCAAGGCATGGTTTGTTCG+TGG | 0.567436 | 4_2:-62871225 | Msa0613950:three_prime_UTR |
| GTCAGAAACGGAAGCTACAT+TGG | 0.567531 | 4_2:+62874972 | None:intergenic |
| GTAGCTTCCGTTTCTGACGA+AGG | 0.576494 | 4_2:-62874967 | Msa0613950:CDS |
| GTAATGCGTCGAGGACCGGC+TGG | 0.578356 | 4_2:-62873269 | Msa0613950:CDS |
| AAGACATTGGTGTGCGACCA+AGG | 0.579375 | 4_2:-62871241 | Msa0613950:three_prime_UTR |
| GTTACAGGATAATATTATGG+AGG | 0.581494 | 4_2:-62871453 | Msa0613950:intron |
| ACTCACGTGGATTCTGGGAA+AGG | 0.583135 | 4_2:+62873449 | None:intergenic |
| CTGCACCGAAAAGTCAGAAG+TGG | 0.584625 | 4_2:+62874309 | None:intergenic |
| AGAACTCTATGCAATGCTTG+CGG | 0.585395 | 4_2:-62873242 | Msa0613950:CDS |
| ATTGGTGTGCGACCAAGGCA+TGG | 0.586887 | 4_2:-62871236 | Msa0613950:three_prime_UTR |
| ATGTGCTGCACAGGACAAGA+AGG | 0.588693 | 4_2:-62872403 | Msa0613950:intron |
| TGTCTGGCATCCATTGGCAA+AGG | 0.604496 | 4_2:+62872218 | None:intergenic |
| AGTTCACTAGCACGAGAGAG+TGG | 0.611323 | 4_2:+62874913 | None:intergenic |
| TGATAACTTGTCAATCCAAG+TGG | 0.613280 | 4_2:-62871653 | Msa0613950:CDS |
| AAGGCATGGTTTGTTCGTGG+TGG | 0.618025 | 4_2:-62871222 | Msa0613950:three_prime_UTR |
| GAACGTAGATGCCAGCATTG+TGG | 0.619610 | 4_2:-62873314 | Msa0613950:CDS |
| CAATGCTTGCGGGCTCATGT+GGG | 0.620002 | 4_2:-62873231 | Msa0613950:CDS |
| GCAAAGGCTTTGTTTCATGG+GGG | 0.623713 | 4_2:+62872234 | None:intergenic |
| ATTCATCTAATAGGATGCAA+CGG | 0.631265 | 4_2:-62873547 | Msa0613950:intron |
| ACGAGAGAGTGGAACAGAAG+CGG | 0.632477 | 4_2:+62874924 | None:intergenic |
| GAGATCTCGGCAAAGCAGGA+AGG | 0.645047 | 4_2:-62872916 | Msa0613950:CDS |
| AATTGGTGCAAAGTCTACTC+CGG | 0.650622 | 4_2:-62873291 | Msa0613950:CDS |
| TGGCTGTGATCTAAAGACAT+TGG | 0.657189 | 4_2:-62871254 | Msa0613950:exon |
| TGCACCGAAAAGTCAGAAGT+GGG | 0.670616 | 4_2:+62874310 | None:intergenic |
| TCTACTCCGGTAATGCGTCG+AGG | 0.699165 | 4_2:-62873278 | Msa0613950:CDS |
| GCCGTAAAGAGCTTGCTGAG+AGG | 0.703271 | 4_2:-62874055 | Msa0613950:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTCTTTTATATTATAAAT+TGG | - | chr4_2:62872096-62872115 | Msa0613950:intron | 10.0% |
| !! | TAAAAGGAAAAAAAAAAAAA+AGG | + | chr4_2:62872176-62872195 | None:intergenic | 10.0% |
| !!! | TTTTTTCCTTTTAAATTATT+TGG | - | chr4_2:62872183-62872202 | Msa0613950:intron | 10.0% |
| !!! | ATAGTATTACTTTTATTTTT+AGG | - | chr4_2:62873600-62873619 | Msa0613950:intron | 10.0% |
| !!! | GTATTTTGATCATTTTTTTT+TGG | - | chr4_2:62871459-62871478 | Msa0613950:intron | 15.0% |
| !!! | TTTTATATTATAAATTGGTC+TGG | - | chr4_2:62872101-62872120 | Msa0613950:intron | 15.0% |
| !! | TTTAAGCCAAATAATTTAAA+AGG | + | chr4_2:62872192-62872211 | None:intergenic | 15.0% |
| !! | ATGAAATTAATTCATCTAAT+AGG | - | chr4_2:62872495-62872514 | Msa0613950:intron | 15.0% |
| !! | TGAATAACATATTATATTCT+TGG | + | chr4_2:62873243-62873262 | None:intergenic | 15.0% |
| !! | TTTCAAAATAACTCTTCATT+CGG | - | chr4_2:62871794-62871813 | Msa0613950:intron | 20.0% |
| !! | TTAAATTTATGATGTTTACC+AGG | - | chr4_2:62871862-62871881 | Msa0613950:intron | 20.0% |
| !! | TAAATTTATGATGTTTACCA+GGG | - | chr4_2:62871863-62871882 | Msa0613950:intron | 20.0% |
| !! | ATATTACAAATAACCAAGAT+AGG | + | chr4_2:62872339-62872358 | None:intergenic | 20.0% |
| !! | CATTTGTTTGAAAGTTAAAA+TGG | - | chr4_2:62872638-62872657 | Msa0613950:intron | 20.0% |
| !!! | TTACCTTTTAGTCTTAATAT+TGG | - | chr4_2:62872669-62872688 | Msa0613950:intron | 20.0% |
| !! | AAAGAAATCATACAAAAATG+AGG | + | chr4_2:62872949-62872968 | None:intergenic | 20.0% |
| !! | TAAGACTGATAAAAGATAAA+GGG | + | chr4_2:62873775-62873794 | None:intergenic | 20.0% |
| !! | ATAAGACTGATAAAAGATAA+AGG | + | chr4_2:62873776-62873795 | None:intergenic | 20.0% |
| !! | TATTTATTTGTTTGTATTCG+TGG | - | chr4_2:62873889-62873908 | Msa0613950:intron | 20.0% |
| !! | TAGAAAATGTAATTACTACA+TGG | + | chr4_2:62874078-62874097 | None:intergenic | 20.0% |
| !!! | TAATAGTTTTGTCAAGTTTT+TGG | - | chr4_2:62874224-62874243 | Msa0613950:intron | 20.0% |
| !! | ATGTTCGGATAAAAAAATTT+AGG | + | chr4_2:62874304-62874323 | None:intergenic | 20.0% |
| !! | CAATAAAATGACATTATGTT+CGG | + | chr4_2:62874319-62874338 | None:intergenic | 20.0% |
| !!! | TGTCATTTTATTGAACATTT+TGG | - | chr4_2:62874326-62874345 | Msa0613950:CDS | 20.0% |
| !! | ACAAAGTAAATGATAGATAA+AGG | + | chr4_2:62874707-62874726 | None:intergenic | 20.0% |
| !! | ACACTATACAAAATTAAATC+CGG | + | chr4_2:62875006-62875025 | None:intergenic | 20.0% |
| !! | GTAAAAAATTGAACCTTTTC+TGG | + | chr4_2:62871210-62871229 | None:intergenic | 25.0% |
| ! | AAAAACTTCAATTGAACGAT+GGG | + | chr4_2:62871249-62871268 | None:intergenic | 25.0% |
| ! | AAAAAACTTCAATTGAACGA+TGG | + | chr4_2:62871250-62871269 | None:intergenic | 25.0% |
| ! | ACTCTATGCAATAAAGTTTA+AGG | - | chr4_2:62871338-62871357 | Msa0613950:intron | 25.0% |
| !! | TATGCAATAAAGTTTAAGGT+TGG | - | chr4_2:62871342-62871361 | Msa0613950:intron | 25.0% |
| ! | TTGGATTAAGTTTCAAATAG+TGG | - | chr4_2:62871361-62871380 | Msa0613950:intron | 25.0% |
| ! | TGGATTAAGTTTCAAATAGT+GGG | - | chr4_2:62871362-62871381 | Msa0613950:intron | 25.0% |
| !! | ACCATTCTTGTGATTTTTAA+AGG | - | chr4_2:62871630-62871649 | Msa0613950:CDS | 25.0% |
| !! | TCCTTTAAAAATCACAAGAA+TGG | + | chr4_2:62871634-62871653 | None:intergenic | 25.0% |
| ! | AAATTTATGATGTTTACCAG+GGG | - | chr4_2:62871864-62871883 | Msa0613950:intron | 25.0% |
| ! | TGTGAAACAACAATATCAAT+AGG | + | chr4_2:62872073-62872092 | None:intergenic | 25.0% |
| !!! | GACAAATCTACAATTTTTTC+GGG | + | chr4_2:62872154-62872173 | None:intergenic | 25.0% |
| !!! | GGACAAATCTACAATTTTTT+CGG | + | chr4_2:62872155-62872174 | None:intergenic | 25.0% |
| !! | AATGGAAGCATATTTAAAGA+GGG | + | chr4_2:62872302-62872321 | None:intergenic | 25.0% |
| !! | AAATGGAAGCATATTTAAAG+AGG | + | chr4_2:62872303-62872322 | None:intergenic | 25.0% |
| !!! | TAGGCTTTATTCAACTTAAA+TGG | + | chr4_2:62872320-62872339 | None:intergenic | 25.0% |
| !!! | TCTTAATATTGGTGCTAATA+CGG | - | chr4_2:62872680-62872699 | Msa0613950:intron | 25.0% |
| !! | GAAATTTGATGATATTACAG+AGG | + | chr4_2:62873016-62873035 | None:intergenic | 25.0% |
| !! | TTCATTTTGCATATTTTCAC+TGG | - | chr4_2:62873190-62873209 | Msa0613950:intron | 25.0% |
| !! | ATTCTTGGTTACTTTATAAC+AGG | + | chr4_2:62873228-62873247 | None:intergenic | 25.0% |
| !!! | TAATTTGCATTGGATTTTGA+GGG | + | chr4_2:62873492-62873511 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGTCATTAATTTG+TGG | + | chr4_2:62873693-62873712 | None:intergenic | 25.0% |
| ! | CAATTCATTGAATAGATAGA+TGG | - | chr4_2:62873999-62874018 | Msa0613950:intron | 25.0% |
| !! | TTATTGAGAATGCAAGTTTT+TGG | - | chr4_2:62874148-62874167 | Msa0613950:CDS | 25.0% |
| ! | ACTATTATCATTATCCACAT+GGG | + | chr4_2:62874211-62874230 | None:intergenic | 25.0% |
| ! | AACTATTATCATTATCCACA+TGG | + | chr4_2:62874212-62874231 | None:intergenic | 25.0% |
| !!! | GCGTGCATAATTTTTTAATT+TGG | - | chr4_2:62874246-62874265 | Msa0613950:intron | 25.0% |
| !! | TATTGAACATTTTGGATCTT+CGG | - | chr4_2:62874334-62874353 | Msa0613950:CDS | 25.0% |
| !! | ATATTGATGATTCCAATATG+AGG | - | chr4_2:62874768-62874787 | Msa0613950:intron | 25.0% |
| ! | GTTTATAGACAAACTATTTC+TGG | - | chr4_2:62874907-62874926 | Msa0613950:CDS | 25.0% |
| ! | AAAATTAAATCCGGTTACAT+GGG | + | chr4_2:62874997-62875016 | None:intergenic | 25.0% |
| AAAACTTCAATTGAACGATG+GGG | + | chr4_2:62871248-62871267 | None:intergenic | 30.0% | |
| !! | TTTTTGGTAGATAGACGAAA+TGG | - | chr4_2:62871475-62871494 | Msa0613950:intron | 30.0% |
| CTGTATTGTTACTCTTAGAT+GGG | - | chr4_2:62871697-62871716 | Msa0613950:intron | 30.0% | |
| !! | AAAGCTTTGAATTACGGAAA+GGG | + | chr4_2:62871898-62871917 | None:intergenic | 30.0% |
| !!! | GATGTTTTGAGAAGAAAATC+CGG | - | chr4_2:62871966-62871985 | Msa0613950:intron | 30.0% |
| ! | CTTATGAGCTAATTTAAGAC+TGG | - | chr4_2:62872217-62872236 | Msa0613950:CDS | 30.0% |
| AAGTTGAATAAAGCCTATCT+TGG | - | chr4_2:62872323-62872342 | Msa0613950:intron | 30.0% | |
| ATTCATCTAATAGGATGCAA+CGG | - | chr4_2:62872504-62872523 | Msa0613950:intron | 30.0% | |
| !! | ATATAACTTTGAAACTCACG+TGG | + | chr4_2:62872618-62872637 | None:intergenic | 30.0% |
| GCACCAATATTAAGACTAAA+AGG | + | chr4_2:62872675-62872694 | None:intergenic | 30.0% | |
| TATGTTATTCATTCCGCATT+CGG | - | chr4_2:62873252-62873271 | Msa0613950:CDS | 30.0% | |
| !! | CTATTTGCTACCTTTTTGTT+TGG | - | chr4_2:62873458-62873477 | Msa0613950:CDS | 30.0% |
| !! | CTAATTTGCATTGGATTTTG+AGG | + | chr4_2:62873493-62873512 | None:intergenic | 30.0% |
| ! | GATTACACTCTAATTTGCAT+TGG | + | chr4_2:62873502-62873521 | None:intergenic | 30.0% |
| ATAAGGTGTAAAAGAAACAG+CGG | + | chr4_2:62873730-62873749 | None:intergenic | 30.0% | |
| !!! | ACCTTATTTTCTTGTGACAT+TGG | - | chr4_2:62873743-62873762 | Msa0613950:intron | 30.0% |
| ACCAATGTCACAAGAAAATA+AGG | + | chr4_2:62873747-62873766 | None:intergenic | 30.0% | |
| !! | TCTTATGTGTTTTTATCCTC+AGG | - | chr4_2:62873790-62873809 | Msa0613950:intron | 30.0% |
| ! | GTTTAAGTTAAATTAGCCTC+AGG | - | chr4_2:62873928-62873947 | Msa0613950:intron | 30.0% |
| GCATTCTCAATAACATGAAT+TGG | + | chr4_2:62874141-62874160 | None:intergenic | 30.0% | |
| CTATTATCATTATCCACATG+GGG | + | chr4_2:62874210-62874229 | None:intergenic | 30.0% | |
| TGAAAACAGTTCGAGTATTA+GGG | - | chr4_2:62874540-62874559 | Msa0613950:intron | 30.0% | |
| ! | TCTGGTATGTTATACTTTTG+AGG | - | chr4_2:62874575-62874594 | Msa0613950:intron | 30.0% |
| ! | CTGGTATGTTATACTTTTGA+GGG | - | chr4_2:62874576-62874595 | Msa0613950:intron | 30.0% |
| AGGGTTACAGGATAATATTA+TGG | - | chr4_2:62874595-62874614 | Msa0613950:intron | 30.0% | |
| GTTACAGGATAATATTATGG+AGG | - | chr4_2:62874598-62874617 | Msa0613950:intron | 30.0% | |
| ! | ACTGAATTTGAGATTCCTTT+AGG | - | chr4_2:62874641-62874660 | Msa0613950:intron | 30.0% |
| ATTCCAATATGAGGATTTAC+TGG | - | chr4_2:62874777-62874796 | Msa0613950:intron | 30.0% | |
| ! | TTCAACTAACTCTAGACTTT+TGG | - | chr4_2:62874872-62874891 | Msa0613950:CDS | 30.0% |
| CAAAATTAAATCCGGTTACA+TGG | + | chr4_2:62874998-62875017 | None:intergenic | 30.0% | |
| ! | TTTTTCACCTTCGTCAGAAA+CGG | + | chr4_2:62871094-62871113 | None:intergenic | 35.0% |
| AAACTTCAATTGAACGATGG+GGG | + | chr4_2:62871247-62871266 | None:intergenic | 35.0% | |
| !!! | ATAGTGGGTTTTCTACAATG+TGG | - | chr4_2:62871377-62871396 | Msa0613950:intron | 35.0% |
| GTGTGTGTGTGAGTTTATAA+TGG | + | chr4_2:62871506-62871525 | None:intergenic | 35.0% | |
| ACCTGCATTTCATTACAAAG+GGG | + | chr4_2:62871672-62871691 | None:intergenic | 35.0% | |
| CACCTGCATTTCATTACAAA+GGG | + | chr4_2:62871673-62871692 | None:intergenic | 35.0% | |
| GCTGTATTGTTACTCTTAGA+TGG | - | chr4_2:62871696-62871715 | Msa0613950:intron | 35.0% | |
| !! | GAAAGCTTTGAATTACGGAA+AGG | + | chr4_2:62871899-62871918 | None:intergenic | 35.0% |
| TCCGTAATTCAAAGCTTTCA+CGG | - | chr4_2:62871900-62871919 | Msa0613950:intron | 35.0% | |
| !! | TCCGTGAAAGCTTTGAATTA+CGG | + | chr4_2:62871904-62871923 | None:intergenic | 35.0% |
| ! | TCTAGGGTTGTTATGATCTT+TGG | - | chr4_2:62872024-62872043 | Msa0613950:intron | 35.0% |
| ! | TTTAAGACTGGACAAGTAGT+TGG | - | chr4_2:62872229-62872248 | Msa0613950:CDS | 35.0% |
| TTAGACACTAACATGTTCTG+CGG | - | chr4_2:62872442-62872461 | Msa0613950:intron | 35.0% | |
| CATCTACGTTCACTTAAGAA+TGG | + | chr4_2:62872728-62872747 | None:intergenic | 35.0% | |
| ! | TCCTTATGTTAGCTTAGCAT+AGG | - | chr4_2:62872861-62872880 | Msa0613950:intron | 35.0% |
| TCCTATGCTAAGCTAACATA+AGG | + | chr4_2:62872865-62872884 | None:intergenic | 35.0% | |
| CATGATTTAACACCTAGTTC+TGG | + | chr4_2:62872926-62872945 | None:intergenic | 35.0% | |
| TATTTACCAACTAGAACCCA+TGG | - | chr4_2:62872971-62872990 | Msa0613950:intron | 35.0% | |
| ! | TGCTTTTGAACAGAATGAAC+TGG | - | chr4_2:62873160-62873179 | Msa0613950:intron | 35.0% |
| TTAAAGTGTAATGCCGAATG+CGG | + | chr4_2:62873268-62873287 | None:intergenic | 35.0% | |
| ACATCCAGGTTACATGAAAA+CGG | + | chr4_2:62873326-62873345 | None:intergenic | 35.0% | |
| ! | TTTTCATGTAACCTGGATGT+TGG | - | chr4_2:62873326-62873345 | Msa0613950:intron | 35.0% |
| !! | TTTCAAGTTGTCACATCACA+TGG | - | chr4_2:62873353-62873372 | Msa0613950:intron | 35.0% |
| ! | GATGCAACACTAGAGAATTT+TGG | - | chr4_2:62873382-62873401 | Msa0613950:intron | 35.0% |
| !! | ACACTAGAGAATTTTGGCAT+AGG | - | chr4_2:62873388-62873407 | Msa0613950:intron | 35.0% |
| GGCAAGTAATCCAAACAAAA+AGG | + | chr4_2:62873471-62873490 | None:intergenic | 35.0% | |
| ATTAGAGTGTAATCCGTTAG+TGG | - | chr4_2:62873508-62873527 | Msa0613950:CDS | 35.0% | |
| TCAAGAAAGAAACCTCAAAC+TGG | + | chr4_2:62873537-62873556 | None:intergenic | 35.0% | |
| ! | CATGAAATTCGAAGCATCTT+TGG | + | chr4_2:62873576-62873595 | None:intergenic | 35.0% |
| ! | ATTTGACTTATCTGCTCACA+TGG | - | chr4_2:62873964-62873983 | Msa0613950:intron | 35.0% |
| ! | TTTGACTTATCTGCTCACAT+GGG | - | chr4_2:62873965-62873984 | Msa0613950:intron | 35.0% |
| ! | ATGAATTGGTCTCAATTTGC+TGG | + | chr4_2:62874127-62874146 | None:intergenic | 35.0% |
| ! | TGATAACTTGTCAATCCAAG+TGG | - | chr4_2:62874398-62874417 | Msa0613950:intron | 35.0% |
| CTGAAAACAGTTCGAGTATT+AGG | - | chr4_2:62874539-62874558 | Msa0613950:intron | 35.0% | |
| ! | TTAGGGCATTATTTGAGATC+TGG | - | chr4_2:62874557-62874576 | Msa0613950:intron | 35.0% |
| !! | GTTATACTTTTGAGGGTTAC+AGG | - | chr4_2:62874583-62874602 | Msa0613950:intron | 35.0% |
| !! | TCCTTTAGGTTTTGATGATC+AGG | - | chr4_2:62874655-62874674 | Msa0613950:intron | 35.0% |
| ACCTGATCATCAAAACCTAA+AGG | + | chr4_2:62874659-62874678 | None:intergenic | 35.0% | |
| ! | ATGAGTTCTGACATACATAC+AGG | - | chr4_2:62874742-62874761 | Msa0613950:intron | 35.0% |
| !! | TAACTCTAGACTTTTGGAGA+TGG | - | chr4_2:62874878-62874897 | Msa0613950:CDS | 35.0% |
| !! | AGACTTTTGGAGATGGTTTA+TGG | - | chr4_2:62874885-62874904 | Msa0613950:CDS | 35.0% |
| ! | TTTTGTACATCCCATGTAAC+CGG | - | chr4_2:62874984-62875003 | Msa0613950:CDS | 35.0% |
| ATGCTGAATTCGTCTGAGAA+TGG | - | chr4_2:62871036-62871055 | Msa0613950:three_prime_UTR | 40.0% | |
| TGCTGAATTCGTCTGAGAAT+GGG | - | chr4_2:62871037-62871056 | Msa0613950:three_prime_UTR | 40.0% | |
| GAACTCACCATTTCCTTTGA+AGG | - | chr4_2:62871156-62871175 | Msa0613950:three_prime_UTR | 40.0% | |
| AACATAAACCTCGCCTTCAA+AGG | + | chr4_2:62871172-62871191 | None:intergenic | 40.0% | |
| !! | TTGAACCTTTTCTGGCGTAA+CGG | + | chr4_2:62871202-62871221 | None:intergenic | 40.0% |
| AAATGCCGAAATTGTTAGGC+CGG | + | chr4_2:62871569-62871588 | None:intergenic | 40.0% | |
| GGCAAAATGCCGAAATTGTT+AGG | + | chr4_2:62871573-62871592 | None:intergenic | 40.0% | |
| CATTACAAAGGGGTGATCAA+AGG | + | chr4_2:62871662-62871681 | None:intergenic | 40.0% | |
| ACCCCTTTGTAATGAAATGC+AGG | - | chr4_2:62871668-62871687 | Msa0613950:CDS | 40.0% | |
| GCACCTGCATTTCATTACAA+AGG | + | chr4_2:62871674-62871693 | None:intergenic | 40.0% | |
| TTGTAATGAAATGCAGGTGC+AGG | - | chr4_2:62871674-62871693 | Msa0613950:CDS | 40.0% | |
| ATTGTTACTCTTAGATGGGC+AGG | - | chr4_2:62871701-62871720 | Msa0613950:intron | 40.0% | |
| CTCTTCATTCGGACATGTAT+TGG | - | chr4_2:62871805-62871824 | Msa0613950:intron | 40.0% | |
| ! | TTATGATCTTTGGTGCAGTC+TGG | - | chr4_2:62872034-62872053 | Msa0613950:intron | 40.0% |
| ATATTTAAAGAGGGAGGCAG+GGG | + | chr4_2:62872293-62872312 | None:intergenic | 40.0% | |
| CATATTTAAAGAGGGAGGCA+GGG | + | chr4_2:62872294-62872313 | None:intergenic | 40.0% | |
| ! | GGAAGCATATTTAAAGAGGG+AGG | + | chr4_2:62872299-62872318 | None:intergenic | 40.0% |
| TGCACGACATTAGAATATGC+TGG | - | chr4_2:62872390-62872409 | Msa0613950:intron | 40.0% | |
| AATAGGATGCAACGGAAGAA+TGG | - | chr4_2:62872512-62872531 | Msa0613950:intron | 40.0% | |
| TGGACAGTTTGCATCATTGA+AGG | - | chr4_2:62872532-62872551 | Msa0613950:intron | 40.0% | |
| TTGAAACTCACGTGGATTCT+GGG | + | chr4_2:62872610-62872629 | None:intergenic | 40.0% | |
| ! | TTTGAAACTCACGTGGATTC+TGG | + | chr4_2:62872611-62872630 | None:intergenic | 40.0% |
| ACGTTCACTTAAGAATGGCA+GGG | + | chr4_2:62872723-62872742 | None:intergenic | 40.0% | |
| TACGTTCACTTAAGAATGGC+AGG | + | chr4_2:62872724-62872743 | None:intergenic | 40.0% | |
| AATTGGTGCAAAGTCTACTC+CGG | - | chr4_2:62872760-62872779 | Msa0613950:intron | 40.0% | |
| ! | CAAGCATTGCATAGAGTTCT+TGG | + | chr4_2:62872809-62872828 | None:intergenic | 40.0% |
| AGAACTCTATGCAATGCTTG+CGG | - | chr4_2:62872809-62872828 | Msa0613950:intron | 40.0% | |
| ! | TTTAAGCCATGGGTTCTAGT+TGG | + | chr4_2:62872980-62872999 | None:intergenic | 40.0% |
| AAAGCTCCTGTTTAAGCCAT+GGG | + | chr4_2:62872990-62873009 | None:intergenic | 40.0% | |
| AAAAGCTCCTGTTTAAGCCA+TGG | + | chr4_2:62872991-62873010 | None:intergenic | 40.0% | |
| AAGATTTCCCAAGTCACTTC+AGG | + | chr4_2:62873053-62873072 | None:intergenic | 40.0% | |
| GCATGGTCTGTTGATATGAA+GGG | - | chr4_2:62873104-62873123 | Msa0613950:intron | 40.0% | |
| GGTTACATGAAAACGGAACT+GGG | + | chr4_2:62873319-62873338 | None:intergenic | 40.0% | |
| AGGTTACATGAAAACGGAAC+TGG | + | chr4_2:62873320-62873339 | None:intergenic | 40.0% | |
| ! | AGTTCCGTTTTCATGTAACC+TGG | - | chr4_2:62873319-62873338 | Msa0613950:intron | 40.0% |
| CTTGAAAAGATCCAACATCC+AGG | + | chr4_2:62873340-62873359 | None:intergenic | 40.0% | |
| AAGCATCTTTGGTTGAGAAC+AGG | + | chr4_2:62873565-62873584 | None:intergenic | 40.0% | |
| ! | TGTGCAGCACATGAATTTTC+TGG | + | chr4_2:62873640-62873659 | None:intergenic | 40.0% |
| AGAAAATTCATGTGCTGCAC+AGG | - | chr4_2:62873639-62873658 | Msa0613950:intron | 40.0% | |
| !! | TGGCAAAGGCTTTGTTTCAT+GGG | + | chr4_2:62873822-62873841 | None:intergenic | 40.0% |
| !! | TTGGCAAAGGCTTTGTTTCA+TGG | + | chr4_2:62873823-62873842 | None:intergenic | 40.0% |
| TGAAACAAAGCCTTTGCCAA+TGG | - | chr4_2:62873823-62873842 | Msa0613950:intron | 40.0% | |
| ACCTGAGATGATAATTGAGC+AGG | - | chr4_2:62873859-62873878 | Msa0613950:intron | 40.0% | |
| ACCTGCTCAATTATCATCTC+AGG | + | chr4_2:62873863-62873882 | None:intergenic | 40.0% | |
| AATTTCCTCATGATAGCCTG+AGG | + | chr4_2:62873947-62873966 | None:intergenic | 40.0% | |
| !! | ATTGGTCTCAATTTGCTGGA+GGG | + | chr4_2:62874123-62874142 | None:intergenic | 40.0% |
| !! | AATTGGTCTCAATTTGCTGG+AGG | + | chr4_2:62874124-62874143 | None:intergenic | 40.0% |
| !! | CAAGAGCATTATTCTCCACT+TGG | + | chr4_2:62874416-62874435 | None:intergenic | 40.0% |
| GACTTCCTACTCTTCAAATG+AGG | - | chr4_2:62874471-62874490 | Msa0613950:intron | 40.0% | |
| GGATACCTCATTTGAAGAGT+AGG | + | chr4_2:62874479-62874498 | None:intergenic | 40.0% | |
| ! | AAATGAGGTATCCTTCTGAG+AGG | - | chr4_2:62874486-62874505 | Msa0613950:intron | 40.0% |
| ! | AATGAGGTATCCTTCTGAGA+GGG | - | chr4_2:62874487-62874506 | Msa0613950:intron | 40.0% |
| AGAGGGGAAAGTCATGAAAA+GGG | - | chr4_2:62874504-62874523 | Msa0613950:intron | 40.0% | |
| GAAAGTCATGAAAAGGGTTG+AGG | - | chr4_2:62874510-62874529 | Msa0613950:intron | 40.0% | |
| ! | AGGATTTTGCTGATGCATCT+GGG | - | chr4_2:62874618-62874637 | Msa0613950:intron | 40.0% |
| CTAGCATTAGCAAGATTGGA+TGG | + | chr4_2:62874684-62874703 | None:intergenic | 40.0% | |
| AAGGCTAGCATTAGCAAGAT+TGG | + | chr4_2:62874688-62874707 | None:intergenic | 40.0% | |
| CAGCCAGTAAATCCTCATAT+TGG | + | chr4_2:62874783-62874802 | None:intergenic | 40.0% | |
| TGGCTGTGATCTAAAGACAT+TGG | - | chr4_2:62874797-62874816 | Msa0613950:intron | 40.0% | |
| ! | TCGTGGTGGAAACTAATTTG+CGG | - | chr4_2:62874843-62874862 | Msa0613950:intron | 40.0% |
| TTCGTCTGAGAATGGGTCAA+TGG | - | chr4_2:62871044-62871063 | Msa0613950:three_prime_UTR | 45.0% | |
| AGCTACATTGGTACAGTGCA+TGG | + | chr4_2:62871070-62871089 | None:intergenic | 45.0% | |
| GTCAGAAACGGAAGCTACAT+TGG | + | chr4_2:62871082-62871101 | None:intergenic | 45.0% | |
| AGTGGAACAGAAGCGGTAAT+GGG | + | chr4_2:62871123-62871142 | None:intergenic | 45.0% | |
| AACCTCGCCTTCAAAGGAAA+TGG | + | chr4_2:62871166-62871185 | None:intergenic | 45.0% | |
| AACTCACACACACACACAAG+TGG | - | chr4_2:62871511-62871530 | Msa0613950:intron | 45.0% | |
| ! | GAGCTAGGACTTCTGGATTT+TGG | - | chr4_2:62871597-62871616 | Msa0613950:intron | 45.0% |
| ! | CGTACCCACTTCTGACTTTT+CGG | - | chr4_2:62871737-62871756 | Msa0613950:intron | 45.0% |
| TGCACCGAAAAGTCAGAAGT+GGG | + | chr4_2:62871744-62871763 | None:intergenic | 45.0% | |
| ! | TTTCGGTGCAGCAAAACTGT+CGG | - | chr4_2:62871754-62871773 | Msa0613950:intron | 45.0% |
| AGCAAAACTGTCGGGACATT+TGG | - | chr4_2:62871763-62871782 | Msa0613950:intron | 45.0% | |
| GCAAAACTGTCGGGACATTT+GGG | - | chr4_2:62871764-62871783 | Msa0613950:intron | 45.0% | |
| GGAGATCTGCATCACTTGTT+AGG | - | chr4_2:62871921-62871940 | Msa0613950:intron | 45.0% | |
| ACCTCTCAGCAAGCTCTTTA+CGG | + | chr4_2:62872000-62872019 | None:intergenic | 45.0% | |
| TTGCTGAGAGGTAGAGTCTA+GGG | - | chr4_2:62872008-62872027 | Msa0613950:intron | 45.0% | |
| TATTTAAAGAGGGAGGCAGG+GGG | + | chr4_2:62872292-62872311 | None:intergenic | 45.0% | |
| GCATATTTAAAGAGGGAGGC+AGG | + | chr4_2:62872295-62872314 | None:intergenic | 45.0% | |
| !! | CTAGAATCCTGGTTTTCAGC+AGG | + | chr4_2:62872572-62872591 | None:intergenic | 45.0% |
| AGATGCCAGCATTGTGGAAT+TGG | - | chr4_2:62872743-62872762 | Msa0613950:intron | 45.0% | |
| TTGCACCAATTCCACAATGC+TGG | + | chr4_2:62872751-62872770 | None:intergenic | 45.0% | |
| GAACTCTATGCAATGCTTGC+GGG | - | chr4_2:62872810-62872829 | Msa0613950:intron | 45.0% | |
| AAGTTCTGCACTCCAGAACT+AGG | - | chr4_2:62872911-62872930 | Msa0613950:CDS | 45.0% | |
| CTAGAACCCATGGCTTAAAC+AGG | - | chr4_2:62872981-62873000 | Msa0613950:intron | 45.0% | |
| CAAGTCACTTCAGGCAAGAT+GGG | + | chr4_2:62873044-62873063 | None:intergenic | 45.0% | |
| CATCTTGCCTGAAGTGACTT+GGG | - | chr4_2:62873043-62873062 | Msa0613950:intron | 45.0% | |
| TGCGAACGTAGGTCAGTAAT+TGG | + | chr4_2:62873087-62873106 | None:intergenic | 45.0% | |
| ATTACTGACCTACGTTCGCA+TGG | - | chr4_2:62873087-62873106 | Msa0613950:intron | 45.0% | |
| CGCATGGTCTGTTGATATGA+AGG | - | chr4_2:62873103-62873122 | Msa0613950:intron | 45.0% | |
| AAGGGAACACTGAGAGATCT+CGG | - | chr4_2:62873122-62873141 | Msa0613950:intron | 45.0% | |
| !! | GCAAAGGCTTTGTTTCATGG+GGG | + | chr4_2:62873820-62873839 | None:intergenic | 45.0% |
| !! | GGCAAAGGCTTTGTTTCATG+GGG | + | chr4_2:62873821-62873840 | None:intergenic | 45.0% |
| TATCATCTCAGGTGACTGTC+TGG | + | chr4_2:62873852-62873871 | None:intergenic | 45.0% | |
| ! | ATTAGCCTCAGGCTATCATG+AGG | - | chr4_2:62873939-62873958 | Msa0613950:intron | 45.0% |
| TTAGTGTCTTTAGCCCCATG+TGG | - | chr4_2:62874194-62874213 | Msa0613950:intron | 45.0% | |
| ! | ATGAGGTATCCTTCTGAGAG+GGG | - | chr4_2:62874488-62874507 | Msa0613950:intron | 45.0% |
| GAGAGGGGAAAGTCATGAAA+AGG | - | chr4_2:62874503-62874522 | Msa0613950:intron | 45.0% | |
| ! | GAGGATTTTGCTGATGCATC+TGG | - | chr4_2:62874617-62874636 | Msa0613950:intron | 45.0% |
| ! | TGGAAACTAATTTGCGGCTC+TGG | - | chr4_2:62874849-62874868 | Msa0613950:intron | 45.0% |
| GTAGCTTCCGTTTCTGACGA+AGG | - | chr4_2:62871084-62871103 | Msa0613950:three_prime_UTR | 50.0% | |
| !! | ACAGAAGCGGTAATGGGTTG+AGG | + | chr4_2:62871117-62871136 | None:intergenic | 50.0% |
| GAGTGGAACAGAAGCGGTAA+TGG | + | chr4_2:62871124-62871143 | None:intergenic | 50.0% | |
| ACGAGAGAGTGGAACAGAAG+CGG | + | chr4_2:62871130-62871149 | None:intergenic | 50.0% | |
| AGTTCACTAGCACGAGAGAG+TGG | + | chr4_2:62871141-62871160 | None:intergenic | 50.0% | |
| ! | CACCATTTCCTTTGAAGGCG+AGG | - | chr4_2:62871161-62871180 | Msa0613950:three_prime_UTR | 50.0% |
| !! | CCTTTTCTGGCGTAACGGAA+GGG | + | chr4_2:62871197-62871216 | None:intergenic | 50.0% |
| !! | ACCTTTTCTGGCGTAACGGA+AGG | + | chr4_2:62871198-62871217 | None:intergenic | 50.0% |
| TCACACACACACACAAGTGG+AGG | - | chr4_2:62871514-62871533 | Msa0613950:intron | 50.0% | |
| ! | ACACACACAAGTGGAGGTAC+CGG | - | chr4_2:62871520-62871539 | Msa0613950:intron | 50.0% |
| GGCATCCGGCCTAACAATTT+CGG | - | chr4_2:62871561-62871580 | Msa0613950:intron | 50.0% | |
| ! | GGCATTTTGCCAGTTGAGCT+AGG | - | chr4_2:62871582-62871601 | Msa0613950:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | + | chr4_2:62871594-62871613 | None:intergenic | 50.0% | |
| CTGCACCGAAAAGTCAGAAG+TGG | + | chr4_2:62871745-62871764 | None:intergenic | 50.0% | |
| ! | TTCGGTGCAGCAAAACTGTC+GGG | - | chr4_2:62871755-62871774 | Msa0613950:intron | 50.0% |
| !!! | GGAAAGGGTCATTTTTCCCC+TGG | + | chr4_2:62871883-62871902 | None:intergenic | 50.0% |
| GCTCTTTACGGCAAGTGTAC+CGG | + | chr4_2:62871988-62872007 | None:intergenic | 50.0% | |
| CTTGCTGAGAGGTAGAGTCT+AGG | - | chr4_2:62872007-62872026 | Msa0613950:intron | 50.0% | |
| CAAGCTTTCACGTGAAGACG+TGG | + | chr4_2:62872267-62872286 | None:intergenic | 50.0% | |
| TCTGCGGATCTTCTCGACTT+TGG | - | chr4_2:62872458-62872477 | Msa0613950:intron | 50.0% | |
| CAGTTCTCCTGCTGAAAACC+AGG | - | chr4_2:62872562-62872581 | Msa0613950:intron | 50.0% | |
| ! | GAGTGCTGTTGCTAGAATCC+TGG | + | chr4_2:62872583-62872602 | None:intergenic | 50.0% |
| ! | ACTCACGTGGATTCTGGGAA+AGG | + | chr4_2:62872605-62872624 | None:intergenic | 50.0% |
| GAACGTAGATGCCAGCATTG+TGG | - | chr4_2:62872737-62872756 | Msa0613950:intron | 50.0% | |
| CATAGAGTTCTTGGACCAGC+CGG | + | chr4_2:62872800-62872819 | None:intergenic | 50.0% | |
| CCAAGTCACTTCAGGCAAGA+TGG | + | chr4_2:62873045-62873064 | None:intergenic | 50.0% | |
| CCATCTTGCCTGAAGTGACT+TGG | - | chr4_2:62873042-62873061 | Msa0613950:intron | 50.0% | |
| TCAACAGACCATGCGAACGT+AGG | + | chr4_2:62873098-62873117 | None:intergenic | 50.0% | |
| CTCAAACTGGCGACCACTAA+CGG | + | chr4_2:62873524-62873543 | None:intergenic | 50.0% | |
| ATGTGCTGCACAGGACAAGA+AGG | - | chr4_2:62873648-62873667 | Msa0613950:intron | 50.0% | |
| TGTCTGGCATCCATTGGCAA+AGG | + | chr4_2:62873836-62873855 | None:intergenic | 50.0% | |
| CATGACTTTCCCCTCTCAGA+AGG | + | chr4_2:62874500-62874519 | None:intergenic | 50.0% | |
| AAGACATTGGTGTGCGACCA+AGG | - | chr4_2:62874810-62874829 | Msa0613950:intron | 50.0% | |
| !! | ACCAAGGCATGGTTTGTTCG+TGG | - | chr4_2:62874826-62874845 | Msa0613950:intron | 50.0% |
| ACCACGAACAAACCATGCCT+TGG | + | chr4_2:62874830-62874849 | None:intergenic | 50.0% | |
| !! | AAGGCATGGTTTGTTCGTGG+TGG | - | chr4_2:62874829-62874848 | Msa0613950:intron | 50.0% |
| CCCTTCCGTTACGCCAGAAA+AGG | - | chr4_2:62871194-62871213 | Msa0613950:three_prime_UTR | 55.0% | |
| !! | CACACACAAGTGGAGGTACC+GGG | - | chr4_2:62871521-62871540 | Msa0613950:intron | 55.0% |
| !! | ACACACAAGTGGAGGTACCG+GGG | - | chr4_2:62871522-62871541 | Msa0613950:intron | 55.0% |
| GCCAGTTGAGCTAGGACTTC+TGG | - | chr4_2:62871590-62871609 | Msa0613950:intron | 55.0% | |
| !! | GCCGTAAAGAGCTTGCTGAG+AGG | - | chr4_2:62871996-62872015 | Msa0613950:intron | 55.0% |
| CACGTGAAGACGTGGCACAA+AGG | + | chr4_2:62872259-62872278 | None:intergenic | 55.0% | |
| TCTACTCCGGTAATGCGTCG+AGG | - | chr4_2:62872773-62872792 | Msa0613950:intron | 55.0% | |
| CAATGCTTGCGGGCTCATGT+GGG | - | chr4_2:62872820-62872839 | Msa0613950:intron | 55.0% | |
| CGGGCTCATGTGGGCAAATA+AGG | - | chr4_2:62872829-62872848 | Msa0613950:intron | 55.0% | |
| CTGAGAGATCTCGGCAAAGC+AGG | - | chr4_2:62873131-62873150 | Msa0613950:intron | 55.0% | |
| GAGATCTCGGCAAAGCAGGA+AGG | - | chr4_2:62873135-62873154 | Msa0613950:intron | 55.0% | |
| CGTTAGTGGTCGCCAGTTTG+AGG | - | chr4_2:62873522-62873541 | Msa0613950:CDS | 55.0% | |
| GTTTCATGGGGGCTTTCCTG+AGG | + | chr4_2:62873809-62873828 | None:intergenic | 55.0% | |
| GGTGACTGTCTGGCATCCAT+TGG | + | chr4_2:62873842-62873861 | None:intergenic | 55.0% | |
| TGCTCTTGATCTGCACGAGC+AGG | - | chr4_2:62874428-62874447 | Msa0613950:intron | 55.0% | |
| ATTGGTGTGCGACCAAGGCA+TGG | - | chr4_2:62874815-62874834 | Msa0613950:intron | 55.0% | |
| TTAGGCCGGATGCCATGACC+GGG | + | chr4_2:62871555-62871574 | None:intergenic | 60.0% | |
| GTTAGGCCGGATGCCATGAC+CGG | + | chr4_2:62871556-62871575 | None:intergenic | 60.0% | |
| TCCGGTAATGCGTCGAGGAC+CGG | - | chr4_2:62872778-62872797 | Msa0613950:intron | 60.0% | |
| GCAATGCTTGCGGGCTCATG+TGG | - | chr4_2:62872819-62872838 | Msa0613950:intron | 60.0% | |
| !! | AGGTACCGGGGTTCGAACCC+CGG | - | chr4_2:62871534-62871553 | Msa0613950:intron | 65.0% |
| CATGACCGGGGTTCGAACCC+CGG | + | chr4_2:62871542-62871561 | None:intergenic | 65.0% | |
| CGAACCCCGGTCATGGCATC+CGG | - | chr4_2:62871547-62871566 | Msa0613950:intron | 65.0% | |
| TAGGCCGGATGCCATGACCG+GGG | + | chr4_2:62871554-62871573 | None:intergenic | 65.0% | |
| GCCGGTCCTCGACGCATTAC+CGG | + | chr4_2:62872782-62872801 | None:intergenic | 65.0% | |
| GTAATGCGTCGAGGACCGGC+TGG | - | chr4_2:62872782-62872801 | Msa0613950:intron | 65.0% | |
| CGGGGTTCGAACCCCGGTCA+TGG | - | chr4_2:62871540-62871559 | Msa0613950:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 62871030 | 62875043 | 62871030 | ID=Msa0613950;Name=Msa0613950 |
| chr4_2 | mRNA | 62871030 | 62875043 | 62871030 | ID=Msa0613950-mRNA-1;Parent=Msa0613950;Name=Msa0613950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.9|0.63|1|1|1|11|238|333 |
| chr4_2 | exon | 62871030 | 62871309 | 62871030 | ID=Msa0613950-mRNA-1:exon:17394;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62871397 | 62871468 | 62871397 | ID=Msa0613950-mRNA-1:exon:17393;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62871624 | 62871704 | 62871624 | ID=Msa0613950-mRNA-1:exon:17392;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62872193 | 62872261 | 62872193 | ID=Msa0613950-mRNA-1:exon:17391;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62872404 | 62872451 | 62872404 | ID=Msa0613950-mRNA-1:exon:17390;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62872892 | 62872948 | 62872892 | ID=Msa0613950-mRNA-1:exon:17389;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62873223 | 62873337 | 62873223 | ID=Msa0613950-mRNA-1:exon:17388;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62873455 | 62873556 | 62873455 | ID=Msa0613950-mRNA-1:exon:17387;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62874056 | 62874189 | 62874056 | ID=Msa0613950-mRNA-1:exon:17386;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62874288 | 62874383 | 62874288 | ID=Msa0613950-mRNA-1:exon:17385;Parent=Msa0613950-mRNA-1 |
| chr4_2 | exon | 62874858 | 62875043 | 62874858 | ID=Msa0613950-mRNA-1:exon:17384;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62874858 | 62875043 | 62874858 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62874288 | 62874383 | 62874288 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62874056 | 62874189 | 62874056 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62873455 | 62873556 | 62873455 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62873223 | 62873337 | 62873223 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62872892 | 62872948 | 62872892 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62872404 | 62872451 | 62872404 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62872193 | 62872261 | 62872193 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62871624 | 62871704 | 62871624 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62871397 | 62871468 | 62871397 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | CDS | 62871268 | 62871309 | 62871268 | ID=Msa0613950-mRNA-1:cds;Parent=Msa0613950-mRNA-1 |
| chr4_2 | three_prime_UTR | 62871030 | 62871267 | 62871030 | ID=Msa0613950-mRNA-1:three_prime_utr;Parent=Msa0613950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
