Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697110 | XP_003608402.1 | 93.413 | 334 | 21 | 1 | 1 | 333 | 1 | 334 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697110 | sp|Q8H1G0|GAT28_ARATH | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 5.89e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697110 | G7JV51 | 93.413 | 334 | 21 | 1 | 1 | 333 | 1 | 334 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0697110 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613950 | Msa0697110 | 0.835413 | 1.703074e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697110 | MtrunA17_Chr4g0049741 | 93.413 | 334 | 21 | 1 | 1 | 333 | 1 | 334 | 0.0 | 647 |
| Msa0697110 | MtrunA17_Chr3g0132751 | 46.179 | 301 | 133 | 8 | 40 | 318 | 66 | 359 | 3.67e-74 | 233 |
| Msa0697110 | MtrunA17_Chr3g0132761 | 44.697 | 264 | 132 | 7 | 5 | 268 | 33 | 282 | 2.00e-57 | 188 |
| Msa0697110 | MtrunA17_Chr5g0427661 | 54.301 | 186 | 66 | 7 | 41 | 219 | 72 | 245 | 5.14e-56 | 184 |
| Msa0697110 | MtrunA17_Chr4g0002231 | 46.237 | 93 | 43 | 1 | 126 | 211 | 43 | 135 | 9.97e-21 | 87.0 |
| Msa0697110 | MtrunA17_Chr3g0102511 | 46.154 | 104 | 41 | 5 | 140 | 235 | 11 | 107 | 1.08e-16 | 80.9 |
| Msa0697110 | MtrunA17_Chr4g0002251 | 52.727 | 55 | 18 | 1 | 177 | 231 | 9 | 55 | 1.40e-12 | 62.4 |
| Msa0697110 | MtrunA17_Chr3g0091641 | 63.830 | 47 | 17 | 0 | 103 | 149 | 493 | 539 | 1.50e-12 | 68.6 |
| Msa0697110 | MtrunA17_Chr4g0061021 | 64.444 | 45 | 16 | 0 | 104 | 148 | 501 | 545 | 8.18e-12 | 66.2 |
| Msa0697110 | MtrunA17_Chr4g0002261 | 67.391 | 46 | 14 | 1 | 105 | 149 | 21 | 66 | 8.71e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697110 | AT1G51600.1 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 5.99e-63 | 202 |
| Msa0697110 | AT1G51600.2 | 59.043 | 188 | 69 | 3 | 40 | 220 | 80 | 266 | 5.99e-63 | 202 |
| Msa0697110 | AT3G21175.2 | 56.316 | 190 | 73 | 4 | 38 | 220 | 74 | 260 | 3.66e-61 | 197 |
| Msa0697110 | AT3G21175.1 | 55.789 | 190 | 76 | 3 | 38 | 220 | 74 | 262 | 3.92e-61 | 197 |
| Msa0697110 | AT4G24470.1 | 46.512 | 215 | 98 | 6 | 19 | 230 | 63 | 263 | 7.82e-49 | 166 |
| Msa0697110 | AT4G24470.2 | 46.512 | 215 | 98 | 6 | 19 | 230 | 63 | 263 | 7.82e-49 | 166 |
| Msa0697110 | AT4G24470.3 | 46.512 | 215 | 98 | 6 | 19 | 230 | 63 | 263 | 1.02e-48 | 166 |
| Msa0697110 | AT3G21175.3 | 51.079 | 139 | 63 | 3 | 38 | 174 | 74 | 209 | 3.63e-33 | 122 |
Find 93 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAGACAAACTATTTC+TGG | 0.191039 | 4_4:-67100220 | Msa0697110:three_prime_UTR |
| CGGGCTCATGTGGGCAAATA+AGG | 0.235102 | 4_4:-67102298 | Msa0697110:intron |
| CAAGCATTGCATAGAGTTCT+TGG | 0.242885 | 4_4:+67102321 | None:intergenic |
| TTGAAACTCACGTGGATTCT+AGG | 0.254647 | 4_4:+67102520 | None:intergenic |
| TTCAACTAACTCTAGACTTT+TGG | 0.255714 | 4_4:-67100255 | Msa0697110:three_prime_UTR |
| ACCTCTCAGCAAGCTCTTTA+CGG | 0.268811 | 4_4:+67103130 | None:intergenic |
| ACTGAATTTGAGATTCCTTT+AGG | 0.291144 | 4_4:-67100486 | Msa0697110:CDS |
| AGCAAAACTGTCGGGACATT+TGG | 0.300350 | 4_4:-67103364 | Msa0697110:CDS |
| ATTCCAATATGAGGATTTAC+TGG | 0.333408 | 4_4:-67100350 | Msa0697110:CDS |
| TCCGTGAAAGCTTTGAATTA+CGG | 0.336575 | 4_4:+67103226 | None:intergenic |
| TTGGCAAAGGCTTTGTTTCA+TGG | 0.339952 | 4_4:+67101307 | None:intergenic |
| GCTGTATTGTTACTCTTAGA+TGG | 0.341296 | 4_4:-67103431 | Msa0697110:CDS |
| GGAGATCTGCATCACTTGTT+AGG | 0.347795 | 4_4:-67103206 | Msa0697110:CDS |
| GAACTCTATGCAATGCTTGC+GGG | 0.368924 | 4_4:-67102317 | Msa0697110:CDS |
| TGGCAAAGGCTTTGTTTCAT+GGG | 0.392126 | 4_4:+67101308 | None:intergenic |
| GCAATGCTTGCGGGCTCATG+TGG | 0.395096 | 4_4:-67102308 | Msa0697110:CDS |
| GCCGGTCCTCGACGCATTAC+CGG | 0.398091 | 4_4:+67102348 | None:intergenic |
| AGGGTTACAGGATAATATTA+TGG | 0.399343 | 4_4:-67100532 | Msa0697110:intron |
| GCAAAACTGTCGGGACATTT+GGG | 0.401442 | 4_4:-67103363 | Msa0697110:intron |
| CAAAATTAAATCCGGTTACA+TGG | 0.403929 | 4_4:+67100132 | None:intergenic |
| GAACTCACCATTTCCTTTGA+AGG | 0.410545 | 4_4:-67103972 | Msa0697110:CDS |
| TGGAAACTAATTTGCGGCTC+TGG | 0.413136 | 4_4:-67100278 | Msa0697110:three_prime_UTR |
| CAAGAGCATTATTCTCCACT+TGG | 0.415392 | 4_4:+67100714 | None:intergenic |
| AGATGCCAGCATTGTGGAAT+TGG | 0.421996 | 4_4:-67102384 | Msa0697110:CDS |
| ACACTATACAAAATTAAATC+CGG | 0.426016 | 4_4:+67100124 | None:intergenic |
| CAGCCAGTAAATCCTCATAT+TGG | 0.426340 | 4_4:+67100347 | None:intergenic |
| TATCATCTCAGGTGATTGTC+TGG | 0.433885 | 4_4:+67101278 | None:intergenic |
| CCCTTCCGTTACGCCAGAAA+AGG | 0.437686 | 4_4:-67103934 | Msa0697110:intron |
| AGAAAATTCATGTGCTGCAC+AGG | 0.441655 | 4_4:-67101488 | Msa0697110:CDS |
| ACCTGCTCAATTATCATCTC+AGG | 0.443550 | 4_4:+67101267 | None:intergenic |
| GAGTGGAACAGAAGCGGTAA+TGG | 0.454383 | 4_4:+67104007 | None:intergenic |
| TCCGTAATTCAAAGCTTTCA+CGG | 0.456528 | 4_4:-67103227 | Msa0697110:CDS |
| ATGCTGAATTCGTCTGAGAA+TGG | 0.460337 | 4_4:-67104092 | Msa0697110:CDS |
| TGCTGAATTCGTCTGAGAAT+GGG | 0.470907 | 4_4:-67104091 | Msa0697110:CDS |
| AATAGGATGCAACGGAAGAA+TGG | 0.473196 | 4_4:-67102615 | Msa0697110:intron |
| GGCAAAGGCTTTGTTTCATG+GGG | 0.473835 | 4_4:+67101309 | None:intergenic |
| ACCTGAGATGATAATTGAGC+AGG | 0.476901 | 4_4:-67101268 | Msa0697110:intron |
| AACCTCGCCTTCAAAGGAAA+TGG | 0.478631 | 4_4:+67103965 | None:intergenic |
| CAGTTCTCCTGCTGAAAACC+AGG | 0.478700 | 4_4:-67102565 | Msa0697110:CDS |
| AGTGGAACAGAAGCGGTAAT+GGG | 0.481649 | 4_4:+67104008 | None:intergenic |
| ATTGTTACTCTTAGATGGGC+AGG | 0.482284 | 4_4:-67103426 | Msa0697110:CDS |
| TGCTCTTGATCTGCACGAGC+AGG | 0.491928 | 4_4:-67100699 | Msa0697110:intron |
| ATATTGATGATTCCAATATG+AGG | 0.497535 | 4_4:-67100359 | Msa0697110:CDS |
| ACAGAAGCGGTAATGGGTTG+AGG | 0.500608 | 4_4:+67104014 | None:intergenic |
| GAGTGCTGTTGCTAGAATCC+TGG | 0.502422 | 4_4:+67102547 | None:intergenic |
| TTGCACCAATTCCACAATGC+TGG | 0.502619 | 4_4:+67102379 | None:intergenic |
| CTGAGAGATCTCGGCAAAGC+AGG | 0.503407 | 4_4:-67101996 | Msa0697110:CDS |
| TTCGGTGCAGCAAAACTGTC+GGG | 0.506228 | 4_4:-67103372 | Msa0697110:CDS |
| TGGACAGTTTGCATCATTGA+AGG | 0.506543 | 4_4:-67102595 | Msa0697110:CDS |
| GCTCTTTACGGCAAGTGTAC+CGG | 0.507579 | 4_4:+67103142 | None:intergenic |
| AACATAAACCTCGCCTTCAA+AGG | 0.517160 | 4_4:+67103959 | None:intergenic |
| TCGTGGTGGAAACTAATTTG+CGG | 0.519847 | 4_4:-67100284 | Msa0697110:three_prime_UTR |
| TCCGGTAATGCGTCGAGGAC+CGG | 0.522308 | 4_4:-67102349 | Msa0697110:CDS |
| CACCATTTCCTTTGAAGGCG+AGG | 0.528900 | 4_4:-67103967 | Msa0697110:CDS |
| CTGTATTGTTACTCTTAGAT+GGG | 0.529102 | 4_4:-67103430 | Msa0697110:CDS |
| ACCTGATCATCAAAACCTAA+AGG | 0.529543 | 4_4:+67100471 | None:intergenic |
| TTCGTCTGAGAATGGGTCAA+TGG | 0.534504 | 4_4:-67104084 | Msa0697110:CDS |
| GGTGATTGTCTGGCATCCAT+TGG | 0.537721 | 4_4:+67101288 | None:intergenic |
| AAAGCTTTGAATTACGGAAA+GGG | 0.538823 | 4_4:+67103232 | None:intergenic |
| ACCACGAACAAACCATGCCT+TGG | 0.552748 | 4_4:+67100300 | None:intergenic |
| AGCTACATTGGTACAGTGCA+TGG | 0.556675 | 4_4:+67104061 | None:intergenic |
| CATAGAGTTCTTGGACCAGC+CGG | 0.557209 | 4_4:+67102330 | None:intergenic |
| AAGGGAACACTGAGAGATCT+CGG | 0.561679 | 4_4:-67102005 | Msa0697110:CDS |
| GAAAGCTTTGAATTACGGAA+AGG | 0.561743 | 4_4:+67103231 | None:intergenic |
| TTTCGGTGCAGCAAAACTGT+CGG | 0.562482 | 4_4:-67103373 | Msa0697110:CDS |
| TGAAACAAAGCCTTTGCCAA+TGG | 0.564941 | 4_4:-67101304 | Msa0697110:CDS |
| AAAATTAAATCCGGTTACAT+GGG | 0.565035 | 4_4:+67100133 | None:intergenic |
| ACCAAGGCATGGTTTGTTCG+TGG | 0.567436 | 4_4:-67100301 | Msa0697110:three_prime_UTR |
| GTCAGAAACGGAAGCTACAT+TGG | 0.567531 | 4_4:+67104049 | None:intergenic |
| GTAGCTTCCGTTTCTGACGA+AGG | 0.576494 | 4_4:-67104044 | Msa0697110:CDS |
| GTAATGCGTCGAGGACCGGC+TGG | 0.578356 | 4_4:-67102345 | Msa0697110:CDS |
| AAGACATTGGTGTGCGACCA+AGG | 0.579375 | 4_4:-67100317 | Msa0697110:three_prime_UTR |
| GTTACAGGATAATATTATGG+AGG | 0.581494 | 4_4:-67100529 | Msa0697110:intron |
| CTGCACCGAAAAGTCAGAAG+TGG | 0.584625 | 4_4:+67103385 | None:intergenic |
| AGAACTCTATGCAATGCTTG+CGG | 0.585395 | 4_4:-67102318 | Msa0697110:CDS |
| ATTGGTGTGCGACCAAGGCA+TGG | 0.586887 | 4_4:-67100312 | Msa0697110:three_prime_UTR |
| TGTCTGGCATCCATTGGCAA+AGG | 0.587746 | 4_4:+67101294 | None:intergenic |
| ATGTGCTGCACAGGACAAGA+AGG | 0.588693 | 4_4:-67101479 | Msa0697110:intron |
| ACTCACGTGGATTCTAGGAA+AGG | 0.610931 | 4_4:+67102525 | None:intergenic |
| AGTTCACTAGCACGAGAGAG+TGG | 0.611323 | 4_4:+67103990 | None:intergenic |
| TGATAACTTGTCAATCCAAG+TGG | 0.613280 | 4_4:-67100729 | Msa0697110:CDS |
| AAGGCATGGTTTGTTCGTGG+TGG | 0.618025 | 4_4:-67100298 | Msa0697110:three_prime_UTR |
| GAACGTAGATGCCAGCATTG+TGG | 0.619610 | 4_4:-67102390 | Msa0697110:CDS |
| CAATGCTTGCGGGCTCATGT+GGG | 0.620002 | 4_4:-67102307 | Msa0697110:CDS |
| GCAAAGGCTTTGTTTCATGG+GGG | 0.623713 | 4_4:+67101310 | None:intergenic |
| ATTCATCTAATAGGATGCAA+CGG | 0.631265 | 4_4:-67102623 | Msa0697110:intron |
| ACGAGAGAGTGGAACAGAAG+CGG | 0.632477 | 4_4:+67104001 | None:intergenic |
| GAGATCTCGGCAAAGCAGGA+AGG | 0.645047 | 4_4:-67101992 | Msa0697110:CDS |
| AATTGGTGCAAAGTCTACTC+CGG | 0.650622 | 4_4:-67102367 | Msa0697110:CDS |
| TGGCTGTGATCTAAAGACAT+TGG | 0.657189 | 4_4:-67100330 | Msa0697110:exon |
| TGCACCGAAAAGTCAGAAGT+GGG | 0.670616 | 4_4:+67103386 | None:intergenic |
| TCTACTCCGGTAATGCGTCG+AGG | 0.699165 | 4_4:-67102354 | Msa0697110:CDS |
| GCCGTAAAGAGCTTGCTGAG+AGG | 0.703271 | 4_4:-67103131 | Msa0697110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGATCATTTTTTTTT+TGG | - | chr4_4:67100536-67100555 | Msa0697110:intron | 10.0% |
| !!! | TCTTCTTTTATATTATAAAT+TGG | - | chr4_4:67101173-67101192 | Msa0697110:intron | 10.0% |
| !! | AAAGGAAAAAAAAAAAAAAA+AGG | + | chr4_4:67101251-67101270 | None:intergenic | 10.0% |
| !!! | TTTTTTCCTTTTAAATTATT+TGG | - | chr4_4:67101260-67101279 | Msa0697110:intron | 10.0% |
| !!! | ATAGTATTACTTTTATTTTT+AGG | - | chr4_4:67102677-67102696 | Msa0697110:intron | 10.0% |
| !!! | TTTTATATTATAAATTGGTC+TGG | - | chr4_4:67101178-67101197 | Msa0697110:intron | 15.0% |
| !! | TTTAAGCCAAATAATTTAAA+AGG | + | chr4_4:67101269-67101288 | None:intergenic | 15.0% |
| !! | ATGAAATTAATTCATCTAAT+AGG | - | chr4_4:67101572-67101591 | Msa0697110:intron | 15.0% |
| !! | TGAATAACATATTATATTCT+TGG | + | chr4_4:67102320-67102339 | None:intergenic | 15.0% |
| !! | TTTCAAAATAACTCTTCATT+CGG | - | chr4_4:67100871-67100890 | Msa0697110:intron | 20.0% |
| !! | TTAAATTTATGATGTTTACC+AGG | - | chr4_4:67100939-67100958 | Msa0697110:intron | 20.0% |
| !! | TAAATTTATGATGTTTACCA+GGG | - | chr4_4:67100940-67100959 | Msa0697110:intron | 20.0% |
| !!! | AAGGACAAATACAATTTTTT+CGG | + | chr4_4:67101232-67101251 | None:intergenic | 20.0% |
| !! | ATATTACAAATAACCAAGAT+AGG | + | chr4_4:67101416-67101435 | None:intergenic | 20.0% |
| !! | CATTTGTTTGAAAGTTAAAA+TGG | - | chr4_4:67101715-67101734 | Msa0697110:intron | 20.0% |
| !!! | TTACCTTTTAGTCTTAATAT+TGG | - | chr4_4:67101746-67101765 | Msa0697110:intron | 20.0% |
| !! | AAAGAAATCATACAAAAATG+AGG | + | chr4_4:67102026-67102045 | None:intergenic | 20.0% |
| !! | TAAGACTGATAAAAGATAAA+GGG | + | chr4_4:67102852-67102871 | None:intergenic | 20.0% |
| !! | ATAAGACTGATAAAAGATAA+AGG | + | chr4_4:67102853-67102872 | None:intergenic | 20.0% |
| !! | TATTTATTTGTTTGTATTCG+TGG | - | chr4_4:67102966-67102985 | Msa0697110:intron | 20.0% |
| !! | TAGAAAATGTAATTACTACA+TGG | + | chr4_4:67103155-67103174 | None:intergenic | 20.0% |
| !!! | TAATAGTTTTGTCAAGTTTT+TGG | - | chr4_4:67103301-67103320 | Msa0697110:intron | 20.0% |
| !! | ATGTTCGGATAAAAAAATTT+AGG | + | chr4_4:67103381-67103400 | None:intergenic | 20.0% |
| !! | CAATAAAATGACATTATGTT+CGG | + | chr4_4:67103396-67103415 | None:intergenic | 20.0% |
| !!! | TGTCATTTTATTGAACATTT+TGG | - | chr4_4:67103403-67103422 | Msa0697110:CDS | 20.0% |
| !! | ACAAAGTAAATGATAGATAA+AGG | + | chr4_4:67103784-67103803 | None:intergenic | 20.0% |
| !! | ACACTATACAAAATTAAATC+CGG | + | chr4_4:67104083-67104102 | None:intergenic | 20.0% |
| !! | GTAAAAAATTGAACCTTTTC+TGG | + | chr4_4:67100286-67100305 | None:intergenic | 25.0% |
| ! | AAAAACTTCAATTGAACGAT+GGG | + | chr4_4:67100325-67100344 | None:intergenic | 25.0% |
| ! | AAAAAACTTCAATTGAACGA+TGG | + | chr4_4:67100326-67100345 | None:intergenic | 25.0% |
| ! | ACTCTATGCAATAAAGTTTA+AGG | - | chr4_4:67100414-67100433 | Msa0697110:intron | 25.0% |
| !! | TATGCAATAAAGTTTAAGGT+TGG | - | chr4_4:67100418-67100437 | Msa0697110:intron | 25.0% |
| ! | TTGGATTAAGTTTCAAATAG+TGG | - | chr4_4:67100437-67100456 | Msa0697110:intron | 25.0% |
| ! | TGGATTAAGTTTCAAATAGT+GGG | - | chr4_4:67100438-67100457 | Msa0697110:intron | 25.0% |
| !! | ACCATTCTTGTGATTTTTAA+AGG | - | chr4_4:67100707-67100726 | Msa0697110:CDS | 25.0% |
| !! | TCCTTTAAAAATCACAAGAA+TGG | + | chr4_4:67100711-67100730 | None:intergenic | 25.0% |
| ! | AAATTTATGATGTTTACCAG+GGG | - | chr4_4:67100941-67100960 | Msa0697110:intron | 25.0% |
| !!! | AGGACAAATACAATTTTTTC+GGG | + | chr4_4:67101231-67101250 | None:intergenic | 25.0% |
| !! | AATGGAAGCATATTTAAAGA+GGG | + | chr4_4:67101379-67101398 | None:intergenic | 25.0% |
| !! | AAATGGAAGCATATTTAAAG+AGG | + | chr4_4:67101380-67101399 | None:intergenic | 25.0% |
| !!! | TAGGCTTTATTCAACTTAAA+TGG | + | chr4_4:67101397-67101416 | None:intergenic | 25.0% |
| !!! | TCTTAATATTGGTGCTAATA+CGG | - | chr4_4:67101757-67101776 | Msa0697110:intron | 25.0% |
| !! | GAAATTTGATGATATTACAG+AGG | + | chr4_4:67102093-67102112 | None:intergenic | 25.0% |
| !! | TTCATTTTGCATATTTTCAC+TGG | - | chr4_4:67102267-67102286 | Msa0697110:intron | 25.0% |
| !! | ATTCTTGGTTACTTTATAAC+AGG | + | chr4_4:67102305-67102324 | None:intergenic | 25.0% |
| !!! | TAATTTGCATTGGATTTTGA+GGG | + | chr4_4:67102569-67102588 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGTCATTAATTTG+TGG | + | chr4_4:67102770-67102789 | None:intergenic | 25.0% |
| ! | CAATTCATTGAATAGATAGA+TGG | - | chr4_4:67103076-67103095 | Msa0697110:intron | 25.0% |
| !! | TTATTGAGAATGCAAGTTTT+TGG | - | chr4_4:67103225-67103244 | Msa0697110:CDS | 25.0% |
| ! | ACTATTATCATTATCCACAT+GGG | + | chr4_4:67103288-67103307 | None:intergenic | 25.0% |
| ! | AACTATTATCATTATCCACA+TGG | + | chr4_4:67103289-67103308 | None:intergenic | 25.0% |
| !!! | GCGTGCATAATTTTTTAATT+TGG | - | chr4_4:67103323-67103342 | Msa0697110:intron | 25.0% |
| !! | TATTGAACATTTTGGATCTT+CGG | - | chr4_4:67103411-67103430 | Msa0697110:CDS | 25.0% |
| !! | ATATTGATGATTCCAATATG+AGG | - | chr4_4:67103845-67103864 | Msa0697110:intron | 25.0% |
| ! | GTTTATAGACAAACTATTTC+TGG | - | chr4_4:67103984-67104003 | Msa0697110:CDS | 25.0% |
| ! | AAAATTAAATCCGGTTACAT+GGG | + | chr4_4:67104074-67104093 | None:intergenic | 25.0% |
| AAAACTTCAATTGAACGATG+GGG | + | chr4_4:67100324-67100343 | None:intergenic | 30.0% | |
| !! | TTTTTGGTAGATAGACGAAA+TGG | - | chr4_4:67100552-67100571 | Msa0697110:intron | 30.0% |
| CTGTATTGTTACTCTTAGAT+GGG | - | chr4_4:67100774-67100793 | Msa0697110:intron | 30.0% | |
| !! | AAAGCTTTGAATTACGGAAA+GGG | + | chr4_4:67100975-67100994 | None:intergenic | 30.0% |
| !!! | GATGTTTTGAGAAGAAAATC+CGG | - | chr4_4:67101043-67101062 | Msa0697110:intron | 30.0% |
| TGTGAGACAACAATATCAAT+AGG | + | chr4_4:67101150-67101169 | None:intergenic | 30.0% | |
| ! | CTTATGAGCTAATTTAAGAC+TGG | - | chr4_4:67101294-67101313 | Msa0697110:CDS | 30.0% |
| AAGTTGAATAAAGCCTATCT+TGG | - | chr4_4:67101400-67101419 | Msa0697110:intron | 30.0% | |
| ATTCATCTAATAGGATGCAA+CGG | - | chr4_4:67101581-67101600 | Msa0697110:intron | 30.0% | |
| !! | ATATAACTTTGAAACTCACG+TGG | + | chr4_4:67101695-67101714 | None:intergenic | 30.0% |
| GCACCAATATTAAGACTAAA+AGG | + | chr4_4:67101752-67101771 | None:intergenic | 30.0% | |
| TATGTTATTCATTCCGCATT+CGG | - | chr4_4:67102329-67102348 | Msa0697110:CDS | 30.0% | |
| !! | CTATTTGCTACCTTTTTGTT+TGG | - | chr4_4:67102535-67102554 | Msa0697110:CDS | 30.0% |
| !! | CTAATTTGCATTGGATTTTG+AGG | + | chr4_4:67102570-67102589 | None:intergenic | 30.0% |
| ! | GATTACACTCTAATTTGCAT+TGG | + | chr4_4:67102579-67102598 | None:intergenic | 30.0% |
| ATAAGGTGTAAAAGAAACAG+CGG | + | chr4_4:67102807-67102826 | None:intergenic | 30.0% | |
| !!! | ACCTTATTTTCTTGTGACAT+TGG | - | chr4_4:67102820-67102839 | Msa0697110:intron | 30.0% |
| ACCAATGTCACAAGAAAATA+AGG | + | chr4_4:67102824-67102843 | None:intergenic | 30.0% | |
| !! | TCTTATGTGTTTTTATCCTC+AGG | - | chr4_4:67102867-67102886 | Msa0697110:intron | 30.0% |
| ! | GTTTAAGTTAAATTAGCCTC+AGG | - | chr4_4:67103005-67103024 | Msa0697110:intron | 30.0% |
| GCATTCTCAATAACATGAAT+TGG | + | chr4_4:67103218-67103237 | None:intergenic | 30.0% | |
| CTATTATCATTATCCACATG+GGG | + | chr4_4:67103287-67103306 | None:intergenic | 30.0% | |
| TGAAAACAGTTCGAGTATTA+GGG | - | chr4_4:67103617-67103636 | Msa0697110:intron | 30.0% | |
| ! | TCTGGTATGTTATACTTTTG+AGG | - | chr4_4:67103652-67103671 | Msa0697110:intron | 30.0% |
| ! | CTGGTATGTTATACTTTTGA+GGG | - | chr4_4:67103653-67103672 | Msa0697110:intron | 30.0% |
| AGGGTTACAGGATAATATTA+TGG | - | chr4_4:67103672-67103691 | Msa0697110:intron | 30.0% | |
| GTTACAGGATAATATTATGG+AGG | - | chr4_4:67103675-67103694 | Msa0697110:intron | 30.0% | |
| ! | ACTGAATTTGAGATTCCTTT+AGG | - | chr4_4:67103718-67103737 | Msa0697110:intron | 30.0% |
| ATTCCAATATGAGGATTTAC+TGG | - | chr4_4:67103854-67103873 | Msa0697110:intron | 30.0% | |
| ! | TTCAACTAACTCTAGACTTT+TGG | - | chr4_4:67103949-67103968 | Msa0697110:CDS | 30.0% |
| CAAAATTAAATCCGGTTACA+TGG | + | chr4_4:67104075-67104094 | None:intergenic | 30.0% | |
| ! | TTTTTCACCTTCGTCAGAAA+CGG | + | chr4_4:67100170-67100189 | None:intergenic | 35.0% |
| AAACTTCAATTGAACGATGG+GGG | + | chr4_4:67100323-67100342 | None:intergenic | 35.0% | |
| !!! | ATAGTGGGTTTTCTACAATG+TGG | - | chr4_4:67100453-67100472 | Msa0697110:intron | 35.0% |
| GTGTGTGTGTGAGTTTATAA+TGG | + | chr4_4:67100583-67100602 | None:intergenic | 35.0% | |
| GCTGTATTGTTACTCTTAGA+TGG | - | chr4_4:67100773-67100792 | Msa0697110:intron | 35.0% | |
| !! | GAAAGCTTTGAATTACGGAA+AGG | + | chr4_4:67100976-67100995 | None:intergenic | 35.0% |
| TCCGTAATTCAAAGCTTTCA+CGG | - | chr4_4:67100977-67100996 | Msa0697110:intron | 35.0% | |
| !! | TCCGTGAAAGCTTTGAATTA+CGG | + | chr4_4:67100981-67101000 | None:intergenic | 35.0% |
| ! | TCTAGGGTTGTTATGATCTT+TGG | - | chr4_4:67101101-67101120 | Msa0697110:intron | 35.0% |
| ! | TTTAAGACTGGACAAGTAGT+TGG | - | chr4_4:67101306-67101325 | Msa0697110:CDS | 35.0% |
| TTAGACACTAACATGTTCTG+CGG | - | chr4_4:67101519-67101538 | Msa0697110:intron | 35.0% | |
| CATCTACGTTCACTTAAGAA+TGG | + | chr4_4:67101805-67101824 | None:intergenic | 35.0% | |
| ! | TCCTTATGTTAGCTTAGCAT+AGG | - | chr4_4:67101938-67101957 | Msa0697110:intron | 35.0% |
| TCCTATGCTAAGCTAACATA+AGG | + | chr4_4:67101942-67101961 | None:intergenic | 35.0% | |
| CATGATTTAACACCTAGTTC+TGG | + | chr4_4:67102003-67102022 | None:intergenic | 35.0% | |
| TATTTACCAACTAGAACCCA+TGG | - | chr4_4:67102048-67102067 | Msa0697110:intron | 35.0% | |
| ! | TGCTTTTGAACAGAATGAAC+TGG | - | chr4_4:67102237-67102256 | Msa0697110:intron | 35.0% |
| TTAAAGTGTAATGCCGAATG+CGG | + | chr4_4:67102345-67102364 | None:intergenic | 35.0% | |
| ACATCCAGGTTACATGAAAA+CGG | + | chr4_4:67102403-67102422 | None:intergenic | 35.0% | |
| ! | TTTTCATGTAACCTGGATGT+TGG | - | chr4_4:67102403-67102422 | Msa0697110:intron | 35.0% |
| !! | TTTCAAGTTGTCACATCACA+TGG | - | chr4_4:67102430-67102449 | Msa0697110:intron | 35.0% |
| ! | GATGCAACACTAGAGAATTT+TGG | - | chr4_4:67102459-67102478 | Msa0697110:intron | 35.0% |
| !! | ACACTAGAGAATTTTGGCAT+AGG | - | chr4_4:67102465-67102484 | Msa0697110:intron | 35.0% |
| GGCAAGTAATCCAAACAAAA+AGG | + | chr4_4:67102548-67102567 | None:intergenic | 35.0% | |
| ATTAGAGTGTAATCCGTTAG+TGG | - | chr4_4:67102585-67102604 | Msa0697110:CDS | 35.0% | |
| TCAAGAAAGAAACCTCAAAC+TGG | + | chr4_4:67102614-67102633 | None:intergenic | 35.0% | |
| ! | CATGAAATTCGAAGCATCTT+TGG | + | chr4_4:67102653-67102672 | None:intergenic | 35.0% |
| ! | ATTTGACTTATCTGCTCACA+TGG | - | chr4_4:67103041-67103060 | Msa0697110:intron | 35.0% |
| ! | TTTGACTTATCTGCTCACAT+GGG | - | chr4_4:67103042-67103061 | Msa0697110:intron | 35.0% |
| ! | ATGAATTGGTCTCAATTTGC+TGG | + | chr4_4:67103204-67103223 | None:intergenic | 35.0% |
| ! | TGATAACTTGTCAATCCAAG+TGG | - | chr4_4:67103475-67103494 | Msa0697110:intron | 35.0% |
| CTGAAAACAGTTCGAGTATT+AGG | - | chr4_4:67103616-67103635 | Msa0697110:intron | 35.0% | |
| ! | TTAGGGCATTATTTGAGATC+TGG | - | chr4_4:67103634-67103653 | Msa0697110:intron | 35.0% |
| !! | GTTATACTTTTGAGGGTTAC+AGG | - | chr4_4:67103660-67103679 | Msa0697110:intron | 35.0% |
| !! | TCCTTTAGGTTTTGATGATC+AGG | - | chr4_4:67103732-67103751 | Msa0697110:intron | 35.0% |
| ACCTGATCATCAAAACCTAA+AGG | + | chr4_4:67103736-67103755 | None:intergenic | 35.0% | |
| ! | ATGAGTTCTGACATACATAC+AGG | - | chr4_4:67103819-67103838 | Msa0697110:intron | 35.0% |
| !! | TAACTCTAGACTTTTGGAGA+TGG | - | chr4_4:67103955-67103974 | Msa0697110:CDS | 35.0% |
| !! | AGACTTTTGGAGATGGTTTA+TGG | - | chr4_4:67103962-67103981 | Msa0697110:CDS | 35.0% |
| ! | TTTTGTACATCCCATGTAAC+CGG | - | chr4_4:67104061-67104080 | Msa0697110:CDS | 35.0% |
| ATGCTGAATTCGTCTGAGAA+TGG | - | chr4_4:67100112-67100131 | Msa0697110:three_prime_UTR | 40.0% | |
| TGCTGAATTCGTCTGAGAAT+GGG | - | chr4_4:67100113-67100132 | Msa0697110:three_prime_UTR | 40.0% | |
| GAACTCACCATTTCCTTTGA+AGG | - | chr4_4:67100232-67100251 | Msa0697110:three_prime_UTR | 40.0% | |
| AACATAAACCTCGCCTTCAA+AGG | + | chr4_4:67100248-67100267 | None:intergenic | 40.0% | |
| !! | TTGAACCTTTTCTGGCGTAA+CGG | + | chr4_4:67100278-67100297 | None:intergenic | 40.0% |
| AAATGCCGATATTGTTAGGC+CGG | + | chr4_4:67100646-67100665 | None:intergenic | 40.0% | |
| GGCAAAATGCCGATATTGTT+AGG | + | chr4_4:67100650-67100669 | None:intergenic | 40.0% | |
| CATTACAAAGGGGTGATCAA+AGG | + | chr4_4:67100739-67100758 | None:intergenic | 40.0% | |
| ACCTGCAGTTCATTACAAAG+GGG | + | chr4_4:67100749-67100768 | None:intergenic | 40.0% | |
| CACCTGCAGTTCATTACAAA+GGG | + | chr4_4:67100750-67100769 | None:intergenic | 40.0% | |
| ATTGTTACTCTTAGATGGGC+AGG | - | chr4_4:67100778-67100797 | Msa0697110:intron | 40.0% | |
| CTCTTCATTCGGACATGTAT+TGG | - | chr4_4:67100882-67100901 | Msa0697110:intron | 40.0% | |
| ! | TTATGATCTTTGGTGCAGTC+TGG | - | chr4_4:67101111-67101130 | Msa0697110:intron | 40.0% |
| ATATTTAAAGAGGGAGGCAG+GGG | + | chr4_4:67101370-67101389 | None:intergenic | 40.0% | |
| CATATTTAAAGAGGGAGGCA+GGG | + | chr4_4:67101371-67101390 | None:intergenic | 40.0% | |
| ! | GGAAGCATATTTAAAGAGGG+AGG | + | chr4_4:67101376-67101395 | None:intergenic | 40.0% |
| TGCACGACATTAGAATATGC+TGG | - | chr4_4:67101467-67101486 | Msa0697110:intron | 40.0% | |
| AATAGGATGCAACGGAAGAA+TGG | - | chr4_4:67101589-67101608 | Msa0697110:intron | 40.0% | |
| TGGACAGTTTGCATCATTGA+AGG | - | chr4_4:67101609-67101628 | Msa0697110:intron | 40.0% | |
| TTGAAACTCACGTGGATTCT+AGG | + | chr4_4:67101687-67101706 | None:intergenic | 40.0% | |
| ACGTTCACTTAAGAATGGCA+GGG | + | chr4_4:67101800-67101819 | None:intergenic | 40.0% | |
| TACGTTCACTTAAGAATGGC+AGG | + | chr4_4:67101801-67101820 | None:intergenic | 40.0% | |
| AATTGGTGCAAAGTCTACTC+CGG | - | chr4_4:67101837-67101856 | Msa0697110:intron | 40.0% | |
| ! | CAAGCATTGCATAGAGTTCT+TGG | + | chr4_4:67101886-67101905 | None:intergenic | 40.0% |
| AGAACTCTATGCAATGCTTG+CGG | - | chr4_4:67101886-67101905 | Msa0697110:intron | 40.0% | |
| ! | TTTAAGCCATGGGTTCTAGT+TGG | + | chr4_4:67102057-67102076 | None:intergenic | 40.0% |
| AAAGCTCCTGTTTAAGCCAT+GGG | + | chr4_4:67102067-67102086 | None:intergenic | 40.0% | |
| AAAAGCTCCTGTTTAAGCCA+TGG | + | chr4_4:67102068-67102087 | None:intergenic | 40.0% | |
| AAGATTTCCCAAGTCACTTC+AGG | + | chr4_4:67102130-67102149 | None:intergenic | 40.0% | |
| GCATGGTCTGTTGATATGAA+GGG | - | chr4_4:67102181-67102200 | Msa0697110:intron | 40.0% | |
| GGTTACATGAAAACGGAACT+GGG | + | chr4_4:67102396-67102415 | None:intergenic | 40.0% | |
| AGGTTACATGAAAACGGAAC+TGG | + | chr4_4:67102397-67102416 | None:intergenic | 40.0% | |
| ! | AGTTCCGTTTTCATGTAACC+TGG | - | chr4_4:67102396-67102415 | Msa0697110:intron | 40.0% |
| CTTGAAAAGATCCAACATCC+AGG | + | chr4_4:67102417-67102436 | None:intergenic | 40.0% | |
| AAGCATCTTTGGTTGAGAAC+AGG | + | chr4_4:67102642-67102661 | None:intergenic | 40.0% | |
| ! | TGTGCAGCACATGAATTTTC+TGG | + | chr4_4:67102717-67102736 | None:intergenic | 40.0% |
| AGAAAATTCATGTGCTGCAC+AGG | - | chr4_4:67102716-67102735 | Msa0697110:intron | 40.0% | |
| !! | TGGCAAAGGCTTTGTTTCAT+GGG | + | chr4_4:67102899-67102918 | None:intergenic | 40.0% |
| !! | TTGGCAAAGGCTTTGTTTCA+TGG | + | chr4_4:67102900-67102919 | None:intergenic | 40.0% |
| TGAAACAAAGCCTTTGCCAA+TGG | - | chr4_4:67102900-67102919 | Msa0697110:intron | 40.0% | |
| TATCATCTCAGGTGATTGTC+TGG | + | chr4_4:67102929-67102948 | None:intergenic | 40.0% | |
| ACCTGAGATGATAATTGAGC+AGG | - | chr4_4:67102936-67102955 | Msa0697110:intron | 40.0% | |
| ACCTGCTCAATTATCATCTC+AGG | + | chr4_4:67102940-67102959 | None:intergenic | 40.0% | |
| AATTTCCTCATGATAGCCTG+AGG | + | chr4_4:67103024-67103043 | None:intergenic | 40.0% | |
| !! | ATTGGTCTCAATTTGCTGGA+GGG | + | chr4_4:67103200-67103219 | None:intergenic | 40.0% |
| !! | AATTGGTCTCAATTTGCTGG+AGG | + | chr4_4:67103201-67103220 | None:intergenic | 40.0% |
| !! | CAAGAGCATTATTCTCCACT+TGG | + | chr4_4:67103493-67103512 | None:intergenic | 40.0% |
| GACTTCCTACTCTTCAAATG+AGG | - | chr4_4:67103548-67103567 | Msa0697110:intron | 40.0% | |
| GGATACCTCATTTGAAGAGT+AGG | + | chr4_4:67103556-67103575 | None:intergenic | 40.0% | |
| ! | AAATGAGGTATCCTTCTGAG+AGG | - | chr4_4:67103563-67103582 | Msa0697110:intron | 40.0% |
| ! | AATGAGGTATCCTTCTGAGA+GGG | - | chr4_4:67103564-67103583 | Msa0697110:intron | 40.0% |
| AGAGGGGAAAGTCATGAAAA+GGG | - | chr4_4:67103581-67103600 | Msa0697110:intron | 40.0% | |
| GAAAGTCATGAAAAGGGTTG+AGG | - | chr4_4:67103587-67103606 | Msa0697110:intron | 40.0% | |
| ! | AGGATTTTGCTGATGCATCT+GGG | - | chr4_4:67103695-67103714 | Msa0697110:intron | 40.0% |
| CTAGCATTAGCAAGATTGGA+TGG | + | chr4_4:67103761-67103780 | None:intergenic | 40.0% | |
| AAGGCTAGCATTAGCAAGAT+TGG | + | chr4_4:67103765-67103784 | None:intergenic | 40.0% | |
| CAGCCAGTAAATCCTCATAT+TGG | + | chr4_4:67103860-67103879 | None:intergenic | 40.0% | |
| TGGCTGTGATCTAAAGACAT+TGG | - | chr4_4:67103874-67103893 | Msa0697110:intron | 40.0% | |
| ! | TCGTGGTGGAAACTAATTTG+CGG | - | chr4_4:67103920-67103939 | Msa0697110:intron | 40.0% |
| TTCGTCTGAGAATGGGTCAA+TGG | - | chr4_4:67100120-67100139 | Msa0697110:three_prime_UTR | 45.0% | |
| AGCTACATTGGTACAGTGCA+TGG | + | chr4_4:67100146-67100165 | None:intergenic | 45.0% | |
| GTCAGAAACGGAAGCTACAT+TGG | + | chr4_4:67100158-67100177 | None:intergenic | 45.0% | |
| AGTGGAACAGAAGCGGTAAT+GGG | + | chr4_4:67100199-67100218 | None:intergenic | 45.0% | |
| AACCTCGCCTTCAAAGGAAA+TGG | + | chr4_4:67100242-67100261 | None:intergenic | 45.0% | |
| AACTCACACACACACACAAG+TGG | - | chr4_4:67100588-67100607 | Msa0697110:intron | 45.0% | |
| ! | GAGCTAGGACTTCTGGATTT+TGG | - | chr4_4:67100674-67100693 | Msa0697110:intron | 45.0% |
| ACCCCTTTGTAATGAACTGC+AGG | - | chr4_4:67100745-67100764 | Msa0697110:CDS | 45.0% | |
| GCACCTGCAGTTCATTACAA+AGG | + | chr4_4:67100751-67100770 | None:intergenic | 45.0% | |
| TTGTAATGAACTGCAGGTGC+AGG | - | chr4_4:67100751-67100770 | Msa0697110:CDS | 45.0% | |
| ! | CGTACCCACTTCTGACTTTT+CGG | - | chr4_4:67100814-67100833 | Msa0697110:intron | 45.0% |
| TGCACCGAAAAGTCAGAAGT+GGG | + | chr4_4:67100821-67100840 | None:intergenic | 45.0% | |
| ! | TTTCGGTGCAGCAAAACTGT+CGG | - | chr4_4:67100831-67100850 | Msa0697110:intron | 45.0% |
| AGCAAAACTGTCGGGACATT+TGG | - | chr4_4:67100840-67100859 | Msa0697110:intron | 45.0% | |
| GCAAAACTGTCGGGACATTT+GGG | - | chr4_4:67100841-67100860 | Msa0697110:intron | 45.0% | |
| GGAGATCTGCATCACTTGTT+AGG | - | chr4_4:67100998-67101017 | Msa0697110:intron | 45.0% | |
| ACCTCTCAGCAAGCTCTTTA+CGG | + | chr4_4:67101077-67101096 | None:intergenic | 45.0% | |
| TTGCTGAGAGGTAGAGTCTA+GGG | - | chr4_4:67101085-67101104 | Msa0697110:intron | 45.0% | |
| TATTTAAAGAGGGAGGCAGG+GGG | + | chr4_4:67101369-67101388 | None:intergenic | 45.0% | |
| GCATATTTAAAGAGGGAGGC+AGG | + | chr4_4:67101372-67101391 | None:intergenic | 45.0% | |
| !! | CTAGAATCCTGGTTTTCAGC+AGG | + | chr4_4:67101649-67101668 | None:intergenic | 45.0% |
| ! | ACTCACGTGGATTCTAGGAA+AGG | + | chr4_4:67101682-67101701 | None:intergenic | 45.0% |
| AGATGCCAGCATTGTGGAAT+TGG | - | chr4_4:67101820-67101839 | Msa0697110:intron | 45.0% | |
| TTGCACCAATTCCACAATGC+TGG | + | chr4_4:67101828-67101847 | None:intergenic | 45.0% | |
| GAACTCTATGCAATGCTTGC+GGG | - | chr4_4:67101887-67101906 | Msa0697110:intron | 45.0% | |
| AAGTTCTGCACTCCAGAACT+AGG | - | chr4_4:67101988-67102007 | Msa0697110:CDS | 45.0% | |
| CTAGAACCCATGGCTTAAAC+AGG | - | chr4_4:67102058-67102077 | Msa0697110:intron | 45.0% | |
| CAAGTCACTTCAGGCAAGAT+GGG | + | chr4_4:67102121-67102140 | None:intergenic | 45.0% | |
| CATCTTGCCTGAAGTGACTT+GGG | - | chr4_4:67102120-67102139 | Msa0697110:intron | 45.0% | |
| TGCGAACGTAGGTCAGTAAT+TGG | + | chr4_4:67102164-67102183 | None:intergenic | 45.0% | |
| ATTACTGACCTACGTTCGCA+TGG | - | chr4_4:67102164-67102183 | Msa0697110:intron | 45.0% | |
| CGCATGGTCTGTTGATATGA+AGG | - | chr4_4:67102180-67102199 | Msa0697110:intron | 45.0% | |
| AAGGGAACACTGAGAGATCT+CGG | - | chr4_4:67102199-67102218 | Msa0697110:intron | 45.0% | |
| !! | GCAAAGGCTTTGTTTCATGG+GGG | + | chr4_4:67102897-67102916 | None:intergenic | 45.0% |
| !! | GGCAAAGGCTTTGTTTCATG+GGG | + | chr4_4:67102898-67102917 | None:intergenic | 45.0% |
| ! | ATTAGCCTCAGGCTATCATG+AGG | - | chr4_4:67103016-67103035 | Msa0697110:intron | 45.0% |
| TTAGTGTCTTTAGCCCCATG+TGG | - | chr4_4:67103271-67103290 | Msa0697110:intron | 45.0% | |
| ! | ATGAGGTATCCTTCTGAGAG+GGG | - | chr4_4:67103565-67103584 | Msa0697110:intron | 45.0% |
| GAGAGGGGAAAGTCATGAAA+AGG | - | chr4_4:67103580-67103599 | Msa0697110:intron | 45.0% | |
| ! | GAGGATTTTGCTGATGCATC+TGG | - | chr4_4:67103694-67103713 | Msa0697110:intron | 45.0% |
| ! | TGGAAACTAATTTGCGGCTC+TGG | - | chr4_4:67103926-67103945 | Msa0697110:intron | 45.0% |
| GTAGCTTCCGTTTCTGACGA+AGG | - | chr4_4:67100160-67100179 | Msa0697110:three_prime_UTR | 50.0% | |
| !! | ACAGAAGCGGTAATGGGTTG+AGG | + | chr4_4:67100193-67100212 | None:intergenic | 50.0% |
| GAGTGGAACAGAAGCGGTAA+TGG | + | chr4_4:67100200-67100219 | None:intergenic | 50.0% | |
| ACGAGAGAGTGGAACAGAAG+CGG | + | chr4_4:67100206-67100225 | None:intergenic | 50.0% | |
| AGTTCACTAGCACGAGAGAG+TGG | + | chr4_4:67100217-67100236 | None:intergenic | 50.0% | |
| ! | CACCATTTCCTTTGAAGGCG+AGG | - | chr4_4:67100237-67100256 | Msa0697110:three_prime_UTR | 50.0% |
| !! | CCTTTTCTGGCGTAACGGAA+GGG | + | chr4_4:67100273-67100292 | None:intergenic | 50.0% |
| !! | ACCTTTTCTGGCGTAACGGA+AGG | + | chr4_4:67100274-67100293 | None:intergenic | 50.0% |
| TCACACACACACACAAGTGG+AGG | - | chr4_4:67100591-67100610 | Msa0697110:intron | 50.0% | |
| ! | ACACACACAAGTGGAGGTAC+CGG | - | chr4_4:67100597-67100616 | Msa0697110:intron | 50.0% |
| GGCATCCGGCCTAACAATAT+CGG | - | chr4_4:67100638-67100657 | Msa0697110:intron | 50.0% | |
| ! | GGCATTTTGCCAGTTGAGCT+AGG | - | chr4_4:67100659-67100678 | Msa0697110:intron | 50.0% |
| TCCAGAAGTCCTAGCTCAAC+TGG | + | chr4_4:67100671-67100690 | None:intergenic | 50.0% | |
| CTGCACCGAAAAGTCAGAAG+TGG | + | chr4_4:67100822-67100841 | None:intergenic | 50.0% | |
| ! | TTCGGTGCAGCAAAACTGTC+GGG | - | chr4_4:67100832-67100851 | Msa0697110:intron | 50.0% |
| !!! | GGAAAGGGTCATTTTTCCCC+TGG | + | chr4_4:67100960-67100979 | None:intergenic | 50.0% |
| GCTCTTTACGGCAAGTGTAC+CGG | + | chr4_4:67101065-67101084 | None:intergenic | 50.0% | |
| CTTGCTGAGAGGTAGAGTCT+AGG | - | chr4_4:67101084-67101103 | Msa0697110:intron | 50.0% | |
| CAAGCTTTCACGTGAAGACG+TGG | + | chr4_4:67101344-67101363 | None:intergenic | 50.0% | |
| TCTGCGGATCTTCTCGACTT+TGG | - | chr4_4:67101535-67101554 | Msa0697110:intron | 50.0% | |
| CAGTTCTCCTGCTGAAAACC+AGG | - | chr4_4:67101639-67101658 | Msa0697110:intron | 50.0% | |
| ! | GAGTGCTGTTGCTAGAATCC+TGG | + | chr4_4:67101660-67101679 | None:intergenic | 50.0% |
| GAACGTAGATGCCAGCATTG+TGG | - | chr4_4:67101814-67101833 | Msa0697110:intron | 50.0% | |
| CATAGAGTTCTTGGACCAGC+CGG | + | chr4_4:67101877-67101896 | None:intergenic | 50.0% | |
| CCAAGTCACTTCAGGCAAGA+TGG | + | chr4_4:67102122-67102141 | None:intergenic | 50.0% | |
| CCATCTTGCCTGAAGTGACT+TGG | - | chr4_4:67102119-67102138 | Msa0697110:intron | 50.0% | |
| TCAACAGACCATGCGAACGT+AGG | + | chr4_4:67102175-67102194 | None:intergenic | 50.0% | |
| CTCAAACTGGCGACCACTAA+CGG | + | chr4_4:67102601-67102620 | None:intergenic | 50.0% | |
| ATGTGCTGCACAGGACAAGA+AGG | - | chr4_4:67102725-67102744 | Msa0697110:intron | 50.0% | |
| TGTCTGGCATCCATTGGCAA+AGG | + | chr4_4:67102913-67102932 | None:intergenic | 50.0% | |
| GGTGATTGTCTGGCATCCAT+TGG | + | chr4_4:67102919-67102938 | None:intergenic | 50.0% | |
| CATGACTTTCCCCTCTCAGA+AGG | + | chr4_4:67103577-67103596 | None:intergenic | 50.0% | |
| AAGACATTGGTGTGCGACCA+AGG | - | chr4_4:67103887-67103906 | Msa0697110:intron | 50.0% | |
| !! | ACCAAGGCATGGTTTGTTCG+TGG | - | chr4_4:67103903-67103922 | Msa0697110:intron | 50.0% |
| ACCACGAACAAACCATGCCT+TGG | + | chr4_4:67103907-67103926 | None:intergenic | 50.0% | |
| !! | AAGGCATGGTTTGTTCGTGG+TGG | - | chr4_4:67103906-67103925 | Msa0697110:intron | 50.0% |
| CCCTTCCGTTACGCCAGAAA+AGG | - | chr4_4:67100270-67100289 | Msa0697110:three_prime_UTR | 55.0% | |
| !! | CACACACAAGTGGAGGTACC+GGG | - | chr4_4:67100598-67100617 | Msa0697110:intron | 55.0% |
| !! | ACACACAAGTGGAGGTACCG+GGG | - | chr4_4:67100599-67100618 | Msa0697110:intron | 55.0% |
| GCCAGTTGAGCTAGGACTTC+TGG | - | chr4_4:67100667-67100686 | Msa0697110:intron | 55.0% | |
| !! | GCCGTAAAGAGCTTGCTGAG+AGG | - | chr4_4:67101073-67101092 | Msa0697110:intron | 55.0% |
| CACGTGAAGACGTGGCACAA+AGG | + | chr4_4:67101336-67101355 | None:intergenic | 55.0% | |
| TCTACTCCGGTAATGCGTCG+AGG | - | chr4_4:67101850-67101869 | Msa0697110:intron | 55.0% | |
| CAATGCTTGCGGGCTCATGT+GGG | - | chr4_4:67101897-67101916 | Msa0697110:intron | 55.0% | |
| CGGGCTCATGTGGGCAAATA+AGG | - | chr4_4:67101906-67101925 | Msa0697110:intron | 55.0% | |
| CTGAGAGATCTCGGCAAAGC+AGG | - | chr4_4:67102208-67102227 | Msa0697110:intron | 55.0% | |
| GAGATCTCGGCAAAGCAGGA+AGG | - | chr4_4:67102212-67102231 | Msa0697110:intron | 55.0% | |
| CGTTAGTGGTCGCCAGTTTG+AGG | - | chr4_4:67102599-67102618 | Msa0697110:CDS | 55.0% | |
| GTTTCATGGGGGCTTTCCTG+AGG | + | chr4_4:67102886-67102905 | None:intergenic | 55.0% | |
| TGCTCTTGATCTGCACGAGC+AGG | - | chr4_4:67103505-67103524 | Msa0697110:intron | 55.0% | |
| ATTGGTGTGCGACCAAGGCA+TGG | - | chr4_4:67103892-67103911 | Msa0697110:intron | 55.0% | |
| TTAGGCCGGATGCCATGACC+GGG | + | chr4_4:67100632-67100651 | None:intergenic | 60.0% | |
| GTTAGGCCGGATGCCATGAC+CGG | + | chr4_4:67100633-67100652 | None:intergenic | 60.0% | |
| TCCGGTAATGCGTCGAGGAC+CGG | - | chr4_4:67101855-67101874 | Msa0697110:intron | 60.0% | |
| GCAATGCTTGCGGGCTCATG+TGG | - | chr4_4:67101896-67101915 | Msa0697110:intron | 60.0% | |
| !! | AGGTACCGGGGTTCGAACCC+CGG | - | chr4_4:67100611-67100630 | Msa0697110:intron | 65.0% |
| CATGACCGGGGTTCGAACCC+CGG | + | chr4_4:67100619-67100638 | None:intergenic | 65.0% | |
| CGAACCCCGGTCATGGCATC+CGG | - | chr4_4:67100624-67100643 | Msa0697110:intron | 65.0% | |
| TAGGCCGGATGCCATGACCG+GGG | + | chr4_4:67100631-67100650 | None:intergenic | 65.0% | |
| GCCGGTCCTCGACGCATTAC+CGG | + | chr4_4:67101859-67101878 | None:intergenic | 65.0% | |
| GTAATGCGTCGAGGACCGGC+TGG | - | chr4_4:67101859-67101878 | Msa0697110:intron | 65.0% | |
| CGGGGTTCGAACCCCGGTCA+TGG | - | chr4_4:67100617-67100636 | Msa0697110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67100106 | 67104120 | 67100106 | ID=Msa0697110;Name=Msa0697110 |
| chr4_4 | mRNA | 67100106 | 67104120 | 67100106 | ID=Msa0697110-mRNA-1;Parent=Msa0697110;Name=Msa0697110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.9|0.63|1|1|1|11|238|333 |
| chr4_4 | exon | 67100106 | 67100385 | 67100106 | ID=Msa0697110-mRNA-1:exon:19668;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67100473 | 67100544 | 67100473 | ID=Msa0697110-mRNA-1:exon:19667;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67100700 | 67100780 | 67100700 | ID=Msa0697110-mRNA-1:exon:19666;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67101269 | 67101337 | 67101269 | ID=Msa0697110-mRNA-1:exon:19665;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67101480 | 67101527 | 67101480 | ID=Msa0697110-mRNA-1:exon:19664;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67101968 | 67102024 | 67101968 | ID=Msa0697110-mRNA-1:exon:19663;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67102299 | 67102413 | 67102299 | ID=Msa0697110-mRNA-1:exon:19662;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67102531 | 67102632 | 67102531 | ID=Msa0697110-mRNA-1:exon:19661;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67103132 | 67103265 | 67103132 | ID=Msa0697110-mRNA-1:exon:19660;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67103364 | 67103459 | 67103364 | ID=Msa0697110-mRNA-1:exon:19659;Parent=Msa0697110-mRNA-1 |
| chr4_4 | exon | 67103935 | 67104120 | 67103935 | ID=Msa0697110-mRNA-1:exon:19658;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67103935 | 67104120 | 67103935 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67103364 | 67103459 | 67103364 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67103132 | 67103265 | 67103132 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67102531 | 67102632 | 67102531 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67102299 | 67102413 | 67102299 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67101968 | 67102024 | 67101968 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67101480 | 67101527 | 67101480 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67101269 | 67101337 | 67101269 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67100700 | 67100780 | 67100700 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67100473 | 67100544 | 67100473 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | CDS | 67100344 | 67100385 | 67100344 | ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1 |
| chr4_4 | three_prime_UTR | 67100106 | 67100343 | 67100106 | ID=Msa0697110-mRNA-1:three_prime_utr;Parent=Msa0697110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
