AlfalfaGEDB | Msa0697110

M. sativa cultivar zhongmu-4 / Msa0697110

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697110	XP_003608402.1	93.413	334	21	1	1	333	1	334	0.0	647

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697110	sp\|Q8H1G0\|GAT28_ARATH	59.043	188	69	3	40	220	80	266	5.89e-62	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697110	G7JV51	93.413	334	21	1	1	333	1	334	0.0	647

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TFs/TRs:

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Gene ID	Type	Classification
Msa0697110	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0613950	Msa0697110	0.835413	1.703074e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697110	MtrunA17_Chr4g0049741	93.413	334	21	1	1	333	1	334	0.0	647
Msa0697110	MtrunA17_Chr3g0132751	46.179	301	133	8	40	318	66	359	3.67e-74	233
Msa0697110	MtrunA17_Chr3g0132761	44.697	264	132	7	5	268	33	282	2.00e-57	188
Msa0697110	MtrunA17_Chr5g0427661	54.301	186	66	7	41	219	72	245	5.14e-56	184
Msa0697110	MtrunA17_Chr4g0002231	46.237	93	43	1	126	211	43	135	9.97e-21	87.0
Msa0697110	MtrunA17_Chr3g0102511	46.154	104	41	5	140	235	11	107	1.08e-16	80.9
Msa0697110	MtrunA17_Chr4g0002251	52.727	55	18	1	177	231	9	55	1.40e-12	62.4
Msa0697110	MtrunA17_Chr3g0091641	63.830	47	17	0	103	149	493	539	1.50e-12	68.6
Msa0697110	MtrunA17_Chr4g0061021	64.444	45	16	0	104	148	501	545	8.18e-12	66.2
Msa0697110	MtrunA17_Chr4g0002261	67.391	46	14	1	105	149	21	66	8.71e-12	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697110	AT1G51600.1	59.043	188	69	3	40	220	80	266	5.99e-63	202
Msa0697110	AT1G51600.2	59.043	188	69	3	40	220	80	266	5.99e-63	202
Msa0697110	AT3G21175.2	56.316	190	73	4	38	220	74	260	3.66e-61	197
Msa0697110	AT3G21175.1	55.789	190	76	3	38	220	74	262	3.92e-61	197
Msa0697110	AT4G24470.1	46.512	215	98	6	19	230	63	263	7.82e-49	166
Msa0697110	AT4G24470.2	46.512	215	98	6	19	230	63	263	7.82e-49	166
Msa0697110	AT4G24470.3	46.512	215	98	6	19	230	63	263	1.02e-48	166
Msa0697110	AT3G21175.3	51.079	139	63	3	38	174	74	209	3.63e-33	122

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Find 93 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAAATCCGGTTACAT+GGG	0.565035	4_4:+67100133	None:intergenic
AAAGCTTTGAATTACGGAAA+GGG	0.538823	4_4:+67103232	None:intergenic
AACATAAACCTCGCCTTCAA+AGG	0.517160	4_4:+67103959	None:intergenic
AACCTCGCCTTCAAAGGAAA+TGG	0.478631	4_4:+67103965	None:intergenic
AAGACATTGGTGTGCGACCA+AGG	0.579375	4_4:-67100317	Msa0697110:three_prime_UTR
AAGGCATGGTTTGTTCGTGG+TGG	0.618025	4_4:-67100298	Msa0697110:three_prime_UTR
AAGGGAACACTGAGAGATCT+CGG	0.561679	4_4:-67102005	Msa0697110:CDS
AATAGGATGCAACGGAAGAA+TGG	0.473196	4_4:-67102615	Msa0697110:intron
AATTGGTGCAAAGTCTACTC+CGG	0.650622	4_4:-67102367	Msa0697110:CDS
ACACTATACAAAATTAAATC+CGG	0.426016	4_4:+67100124	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTCAATTGAACGATG+GGG	+	chr4_4:67100324-67100343	None:intergenic	30.0%
CTGTATTGTTACTCTTAGAT+GGG	-	chr4_4:67100774-67100793	Msa0697110:intron	30.0%
TGTGAGACAACAATATCAAT+AGG	+	chr4_4:67101150-67101169	None:intergenic	30.0%
AAGTTGAATAAAGCCTATCT+TGG	-	chr4_4:67101400-67101419	Msa0697110:intron	30.0%
ATTCATCTAATAGGATGCAA+CGG	-	chr4_4:67101581-67101600	Msa0697110:intron	30.0%
GCACCAATATTAAGACTAAA+AGG	+	chr4_4:67101752-67101771	None:intergenic	30.0%
TATGTTATTCATTCCGCATT+CGG	-	chr4_4:67102329-67102348	Msa0697110:CDS	30.0%
ATAAGGTGTAAAAGAAACAG+CGG	+	chr4_4:67102807-67102826	None:intergenic	30.0%
ACCAATGTCACAAGAAAATA+AGG	+	chr4_4:67102824-67102843	None:intergenic	30.0%
GCATTCTCAATAACATGAAT+TGG	+	chr4_4:67103218-67103237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	67100106	67104120	67100106	ID=Msa0697110;Name=Msa0697110
chr4_4	mRNA	67100106	67104120	67100106	ID=Msa0697110-mRNA-1;Parent=Msa0697110;Name=Msa0697110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.9\|0.63\|1\|1\|1\|11\|238\|333
chr4_4	exon	67100106	67100385	67100106	ID=Msa0697110-mRNA-1:exon:19668;Parent=Msa0697110-mRNA-1
chr4_4	exon	67100473	67100544	67100473	ID=Msa0697110-mRNA-1:exon:19667;Parent=Msa0697110-mRNA-1
chr4_4	exon	67100700	67100780	67100700	ID=Msa0697110-mRNA-1:exon:19666;Parent=Msa0697110-mRNA-1
chr4_4	exon	67101269	67101337	67101269	ID=Msa0697110-mRNA-1:exon:19665;Parent=Msa0697110-mRNA-1
chr4_4	exon	67101480	67101527	67101480	ID=Msa0697110-mRNA-1:exon:19664;Parent=Msa0697110-mRNA-1
chr4_4	exon	67101968	67102024	67101968	ID=Msa0697110-mRNA-1:exon:19663;Parent=Msa0697110-mRNA-1
chr4_4	exon	67102299	67102413	67102299	ID=Msa0697110-mRNA-1:exon:19662;Parent=Msa0697110-mRNA-1
chr4_4	exon	67102531	67102632	67102531	ID=Msa0697110-mRNA-1:exon:19661;Parent=Msa0697110-mRNA-1
chr4_4	exon	67103132	67103265	67103132	ID=Msa0697110-mRNA-1:exon:19660;Parent=Msa0697110-mRNA-1
chr4_4	exon	67103364	67103459	67103364	ID=Msa0697110-mRNA-1:exon:19659;Parent=Msa0697110-mRNA-1
chr4_4	exon	67103935	67104120	67103935	ID=Msa0697110-mRNA-1:exon:19658;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67103935	67104120	67103935	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67103364	67103459	67103364	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67103132	67103265	67103132	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67102531	67102632	67102531	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67102299	67102413	67102299	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67101968	67102024	67101968	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67101480	67101527	67101480	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67101269	67101337	67101269	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67100700	67100780	67100700	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67100473	67100544	67100473	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	CDS	67100344	67100385	67100344	ID=Msa0697110-mRNA-1:cds;Parent=Msa0697110-mRNA-1
chr4_4	three_prime_UTR	67100106	67100343	67100106	ID=Msa0697110-mRNA-1:three_prime_utr;Parent=Msa0697110-mRNA-1

Gene Sequence

>Msa0697110

ATGGAAATGCTGAATTCGTCTGAGAATGGGTCAATGGCCATGCACTGTACCAATGTAGCTTCCGTTTCTGACGAAGGTGAAAAACCTCAACCCATTACCGCTTCTGTTCCACTCTCTCGTGCTAGTGAACTCACCATTTCCTTTGAAGGCGAGGTTTATGTTTTCCCTTCCGTTACGCCAGAAAAGGTGCAGGCTGTATTGTTACTCTTAGATGGGCAGGAGACACGCAATAGCGTACCCACTTCTGACTTTTCGGTGCAGCAAAACTGTCGGGACATTTGGGGGAAAAATGACCCTTTCCGTAATTCAAAGCTTTCACGGAGATCTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGGTACACTTGCCGTAAAGAGCTTGCTGAGAGGATGCAACGGAAGAATGGACAGTTTGCATCATTGAAGGAAGAATGCAGTTCTCCTGCTGAAAACCAGGATTCTAGCAACAGCACTCCTTTCCTAGAATCCACTGAACGTAGATGCCAGCATTGTGGAATTGGTGCAAAGTCTACTCCGGTAATGCGTCGAGGACCGGCTGGTCCAAGAACTCTATGCAATGCTTGCGGGCTCATGTGGGCAAATAAGGGAACACTGAGAGATCTCGGCAAAGCAGGAAGGATTGCTTTTGAACAGAATGAACTGGATTTTTCAACAGATCCAGAAAATTCATGTGCTGCACAGGACAAGAAGGAAAGCCCCCATGAAACAAAGCCTTTGCCAATGGATGCCAGACAATCACCTGAGATGATAATTGAGCAGTATATGCTCGAAGCTGCTGAAGCAGTTACTGATAACTTGTCAATCCAAGTGGAGAATAATGCTCTTGATCTGCACGAGCAGGATAATATTATGGAGGATTTTGCTGATGCATCTGGGACTGAATTTGAGATTCCTTTAGGTTTTGATGATCAGGTCGATATTGATGATTCCAATATGAGGATTTACTGGCTGTGA

Protein sequence

>Msa0697110

MEMLNSSENGSMAMHCTNVASVSDEGEKPQPITASVPLSRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGQETRNSVPTSDFSVQQNCRDIWGKNDPFRNSKLSRRSASLVRFREKRKERCFEKKIRYTCRKELAERMQRKNGQFASLKEECSSPAENQDSSNSTPFLESTERRCQHCGIGAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLGKAGRIAFEQNELDFSTDPENSCAAQDKKESPHETKPLPMDARQSPEMIIEQYMLEAAEAVTDNLSIQVENNALDLHEQDNIMEDFADASGTEFEIPLGFDDQVDIDDSNMRIYWL*