Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613960 | XP_024636490.1 | 72.853 | 361 | 38 | 4 | 34 | 334 | 1 | 361 | 4.17e-170 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613960 | sp|Q9SV82|FBD40_ARATH | 26.290 | 407 | 205 | 16 | 51 | 392 | 2 | 378 | 9.23e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0559830 | Msa0613960 | 0.881119 | 3.127450e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613960 | MtrunA17_Chr4g0049751 | 66.582 | 395 | 36 | 5 | 34 | 332 | 1 | 395 | 5.51e-167 | 475 |
| Msa0613960 | MtrunA17_Chr4g0027431 | 51.204 | 457 | 141 | 8 | 43 | 437 | 1 | 437 | 4.04e-129 | 380 |
| Msa0613960 | MtrunA17_Chr4g0027411 | 46.493 | 499 | 143 | 10 | 43 | 437 | 1 | 479 | 5.04e-117 | 351 |
| Msa0613960 | MtrunA17_Chr4g0027441 | 48.140 | 457 | 155 | 8 | 43 | 437 | 1 | 437 | 7.83e-117 | 349 |
| Msa0613960 | MtrunA17_Chr4g0027231 | 52.835 | 388 | 129 | 7 | 84 | 437 | 197 | 564 | 4.55e-106 | 326 |
| Msa0613960 | MtrunA17_Chr4g0027471 | 57.669 | 326 | 102 | 6 | 88 | 378 | 113 | 437 | 3.47e-103 | 313 |
| Msa0613960 | MtrunA17_Chr4g0027421 | 54.545 | 319 | 100 | 6 | 85 | 393 | 45 | 328 | 7.36e-95 | 288 |
| Msa0613960 | MtrunA17_Chr1g0197661 | 46.134 | 388 | 110 | 12 | 34 | 327 | 1 | 383 | 5.75e-78 | 247 |
| Msa0613960 | MtrunA17_Chr1g0164901 | 46.369 | 358 | 123 | 9 | 43 | 332 | 1 | 357 | 2.21e-74 | 237 |
| Msa0613960 | MtrunA17_Chr4g0027461 | 41.945 | 329 | 98 | 8 | 43 | 279 | 1 | 328 | 3.64e-55 | 186 |
| Msa0613960 | MtrunA17_Chr7g0270951 | 50.549 | 182 | 77 | 4 | 163 | 332 | 7 | 187 | 1.12e-39 | 141 |
| Msa0613960 | MtrunA17_Chr4g0027451 | 58.268 | 127 | 34 | 1 | 311 | 437 | 1 | 108 | 3.46e-39 | 137 |
| Msa0613960 | MtrunA17_Chr1g0197671 | 50.307 | 163 | 48 | 4 | 35 | 164 | 3 | 165 | 2.71e-36 | 132 |
| Msa0613960 | MtrunA17_Chr3g0138371 | 27.569 | 399 | 208 | 17 | 48 | 406 | 17 | 374 | 1.14e-17 | 84.3 |
| Msa0613960 | MtrunA17_Chr8g0358771 | 30.514 | 331 | 176 | 14 | 115 | 410 | 23 | 334 | 2.01e-17 | 83.2 |
| Msa0613960 | MtrunA17_Chr8g0360061 | 26.889 | 450 | 227 | 18 | 35 | 392 | 3 | 442 | 1.61e-15 | 78.6 |
| Msa0613960 | MtrunA17_Chr5g0438191 | 26.005 | 423 | 223 | 17 | 47 | 404 | 9 | 406 | 3.26e-14 | 74.3 |
| Msa0613960 | MtrunA17_Chr5g0431681 | 25.459 | 381 | 191 | 16 | 51 | 394 | 8 | 332 | 7.02e-14 | 72.8 |
| Msa0613960 | MtrunA17_Chr7g0227851 | 24.372 | 398 | 190 | 14 | 51 | 392 | 11 | 353 | 8.77e-14 | 72.8 |
| Msa0613960 | MtrunA17_Chr5g0419431 | 22.872 | 376 | 219 | 12 | 54 | 392 | 17 | 358 | 1.88e-13 | 71.6 |
| Msa0613960 | MtrunA17_Chr2g0278121 | 22.197 | 446 | 227 | 15 | 38 | 406 | 3 | 405 | 7.13e-13 | 70.1 |
| Msa0613960 | MtrunA17_Chr7g0227651 | 25.189 | 397 | 186 | 14 | 51 | 392 | 11 | 351 | 9.89e-13 | 69.3 |
| Msa0613960 | MtrunA17_Chr3g0132631 | 25.130 | 386 | 209 | 17 | 51 | 400 | 12 | 353 | 1.18e-11 | 65.9 |
| Msa0613960 | MtrunA17_Chr7g0236211 | 24.257 | 404 | 217 | 18 | 51 | 406 | 12 | 374 | 2.68e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613960 | AT4G10400.2 | 26.290 | 407 | 205 | 16 | 51 | 392 | 2 | 378 | 9.38e-15 | 76.3 |
| Msa0613960 | AT4G10400.3 | 26.290 | 407 | 205 | 16 | 51 | 392 | 2 | 378 | 9.38e-15 | 76.3 |
| Msa0613960 | AT4G10400.1 | 26.290 | 407 | 205 | 16 | 51 | 392 | 2 | 378 | 9.38e-15 | 76.3 |
| Msa0613960 | AT4G26350.1 | 23.445 | 418 | 232 | 15 | 51 | 398 | 2 | 401 | 2.41e-14 | 75.1 |
| Msa0613960 | AT2G26860.1 | 27.941 | 408 | 215 | 18 | 51 | 392 | 2 | 396 | 1.12e-12 | 69.7 |
| Msa0613960 | AT2G26860.2 | 27.941 | 408 | 215 | 18 | 51 | 392 | 2 | 396 | 1.12e-12 | 69.7 |
| Msa0613960 | AT5G56380.2 | 25.114 | 438 | 233 | 16 | 51 | 410 | 2 | 422 | 2.03e-12 | 69.3 |
| Msa0613960 | AT5G56380.1 | 25.114 | 438 | 233 | 16 | 51 | 410 | 2 | 422 | 2.03e-12 | 69.3 |
| Msa0613960 | AT3G59200.1 | 25.052 | 479 | 238 | 18 | 51 | 425 | 7 | 468 | 2.98e-12 | 68.9 |
| Msa0613960 | AT3G50710.1 | 25.495 | 404 | 219 | 15 | 51 | 388 | 2 | 389 | 3.22e-11 | 65.5 |
| Msa0613960 | AT3G52680.1 | 24.337 | 415 | 243 | 14 | 33 | 390 | 5 | 405 | 4.42e-11 | 65.1 |
| Msa0613960 | AT5G56370.1 | 24.750 | 400 | 237 | 13 | 51 | 400 | 2 | 387 | 7.71e-11 | 64.3 |
| Msa0613960 | AT5G56370.2 | 24.750 | 400 | 237 | 13 | 51 | 400 | 2 | 387 | 7.71e-11 | 64.3 |
| Msa0613960 | AT4G14096.2 | 22.955 | 440 | 256 | 14 | 51 | 415 | 8 | 439 | 9.32e-11 | 63.9 |
| Msa0613960 | AT4G14096.1 | 22.955 | 440 | 256 | 14 | 51 | 415 | 8 | 439 | 9.32e-11 | 63.9 |
Find 79 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTACGTTTGAATTTAA+AGG | 0.152192 | 4_2:-62880562 | Msa0613960:CDS |
| GTTTATCAACTCGTATTCTT+TGG | 0.236454 | 4_2:+62882558 | None:intergenic |
| AGTTTACATATACTCTTAAA+AGG | 0.252196 | 4_2:-62882481 | Msa0613960:CDS |
| AGAAATCATCAACACTAGTA+TGG | 0.260203 | 4_2:-62880348 | Msa0613960:CDS |
| CAGGAACTTCACTTGGAGTT+TGG | 0.267226 | 4_2:-62882976 | Msa0613960:CDS |
| AATCTCCTCCATTGAGAATA+TGG | 0.277103 | 4_2:-62883346 | Msa0613960:CDS |
| AATAGCCTTAGCGGCAATAT+AGG | 0.286870 | 4_2:+62882940 | None:intergenic |
| CCTCACTTCTGAAACAATTA+AGG | 0.291254 | 4_2:-62882434 | Msa0613960:intron |
| GATCTTCTTGAATTACTATC+TGG | 0.333607 | 4_2:-62882766 | Msa0613960:CDS |
| CCCGTCATCACTCGAAGTTT+TGG | 0.336360 | 4_2:-62882599 | Msa0613960:CDS |
| AGGAACTTCACTTGGAGTTT+GGG | 0.343096 | 4_2:-62882975 | Msa0613960:CDS |
| TCAAGCCTGTACTGTATATA+AGG | 0.345456 | 4_2:+62883414 | None:intergenic |
| TTTATCAACTCGTATTCTTT+GGG | 0.348547 | 4_2:+62882559 | None:intergenic |
| TCAAAATGCTCCTAAGCTTA+AGG | 0.349799 | 4_2:-62882195 | Msa0613960:CDS |
| TCATGAATTATTGTCTTTGT+CGG | 0.354616 | 4_2:-62882264 | Msa0613960:CDS |
| CACATTCCAATTGCAATTCT+CGG | 0.360549 | 4_2:+62882232 | None:intergenic |
| CCTTCTCTAATTTACTTGAA+TGG | 0.398004 | 4_2:+62880491 | None:intergenic |
| TCTGATAGTGGTTCTCCCAT+TGG | 0.400426 | 4_2:-62882640 | Msa0613960:CDS |
| TAGCGATCTCTCAGACGAAT+TGG | 0.410984 | 4_2:-62883268 | Msa0613960:CDS |
| GAATTATTGTCTTTGTCGGT+TGG | 0.412480 | 4_2:-62882260 | Msa0613960:CDS |
| ATAGCCTTAGCGGCAATATA+GGG | 0.419309 | 4_2:+62882941 | None:intergenic |
| CGTCTGAGAGATCGCTAAAC+CGG | 0.439027 | 4_2:+62883274 | None:intergenic |
| TGCAATTGGAATGTGCTTGT+TGG | 0.447677 | 4_2:-62882224 | Msa0613960:CDS |
| CGTACACTTGTGGGTTTCAA+AGG | 0.450086 | 4_2:-62883016 | Msa0613960:CDS |
| GGCTTCCTCCATATTCTCAA+TGG | 0.451116 | 4_2:+62883338 | None:intergenic |
| AAGGGAAAAGAGATATTGAT+AGG | 0.453862 | 4_2:+62882697 | None:intergenic |
| ATATTCTCAATGGAGGAGAT+TGG | 0.456119 | 4_2:+62883348 | None:intergenic |
| ATTAATTTGCAAGGTTCCAA+TGG | 0.458800 | 4_2:+62882624 | None:intergenic |
| GAATATCCGAGAATTGCAAT+TGG | 0.461307 | 4_2:-62882238 | Msa0613960:CDS |
| CTTAGCGGCAATATAGGGTT+AGG | 0.466079 | 4_2:+62882946 | None:intergenic |
| ACCATGTGACGTACACTTGT+GGG | 0.473340 | 4_2:-62883025 | Msa0613960:CDS |
| GGCATTAGATCTCAAGGTAC+AGG | 0.492910 | 4_2:-62882995 | Msa0613960:CDS |
| CAAGGTACAGGAACTTCACT+TGG | 0.494897 | 4_2:-62882983 | Msa0613960:CDS |
| ATGACAAGGTCCTTAAGCTT+AGG | 0.495284 | 4_2:+62882185 | None:intergenic |
| GGAGGTTGGAAACTCGCGTT+GGG | 0.500783 | 4_2:-62880623 | Msa0613960:CDS |
| TTAATTTGCAAGGTTCCAAT+GGG | 0.510576 | 4_2:+62882625 | None:intergenic |
| CTTAATTGTTTCAGAAGTGA+GGG | 0.517383 | 4_2:+62882435 | None:intergenic |
| GTTGGAAACTCGCGTTGGGT+GGG | 0.517855 | 4_2:-62880619 | Msa0613960:CDS |
| ACAATAATTCATGAAAGGTA+AGG | 0.520337 | 4_2:+62882273 | None:intergenic |
| GGTTGGAAACTCGCGTTGGG+TGG | 0.520506 | 4_2:-62880620 | Msa0613960:CDS |
| TCAAAATATAAAAGCTGAGG+TGG | 0.521005 | 4_2:-62880536 | Msa0613960:CDS |
| ATCTGGTTGCCCACGTCTTG+AGG | 0.522358 | 4_2:-62882749 | Msa0613960:CDS |
| AACTCTCAAAGAAAGGAGGT+TGG | 0.527053 | 4_2:-62880637 | Msa0613960:CDS |
| GAAATCATCAACACTAGTAT+GGG | 0.529099 | 4_2:-62880347 | Msa0613960:CDS |
| CTACGTCTACATAATTATGA+TGG | 0.530026 | 4_2:-62883054 | Msa0613960:CDS |
| CCTTAATTGTTTCAGAAGTG+AGG | 0.531772 | 4_2:+62882434 | None:intergenic |
| TTCAAAGGCATTAGATCTCA+AGG | 0.534537 | 4_2:-62883001 | Msa0613960:CDS |
| TCCAAAACTTCGAGTGATGA+CGG | 0.542313 | 4_2:+62882598 | None:intergenic |
| AGACATGTCGGAGTCGTCGA+TGG | 0.543212 | 4_2:+62880595 | None:intergenic |
| TCGGATCTAAATAGCCTTAG+CGG | 0.552381 | 4_2:+62882931 | None:intergenic |
| AACCATGTGACGTACACTTG+TGG | 0.556597 | 4_2:-62883026 | Msa0613960:CDS |
| ACGTTCCTTATATACAGTAC+AGG | 0.558780 | 4_2:-62883419 | Msa0613960:CDS |
| GTAGAAAGAAATTTACTCAA+GGG | 0.561818 | 4_2:-62880376 | Msa0613960:CDS |
| CTAACCCTATATTGCCGCTA+AGG | 0.563447 | 4_2:-62882945 | Msa0613960:CDS |
| ATATACAGATTTAATTTCTG+TGG | 0.565214 | 4_2:+62883113 | None:intergenic |
| CCAAAACTTCGAGTGATGAC+GGG | 0.570090 | 4_2:+62882599 | None:intergenic |
| TGACGGGACATTAATTTGCA+AGG | 0.576167 | 4_2:+62882615 | None:intergenic |
| GGTAGAAAGAAATTTACTCA+AGG | 0.579259 | 4_2:-62880377 | Msa0613960:CDS |
| ACCCACAAGTGTACGTCACA+TGG | 0.580936 | 4_2:+62883024 | None:intergenic |
| CAAAGACAATAATTCATGAA+AGG | 0.584106 | 4_2:+62882268 | None:intergenic |
| TAGAAAGAAATTTACTCAAG+GGG | 0.588300 | 4_2:-62880375 | Msa0613960:CDS |
| GGTAGAAAGAAAATTAGAGA+AGG | 0.591202 | 4_2:-62880434 | Msa0613960:CDS |
| GCTTAAGGACCTTGTCATTG+CGG | 0.593199 | 4_2:-62882180 | Msa0613960:intron |
| TTTAATAGAATTAATAATCG+AGG | 0.599178 | 4_2:+62883386 | None:intergenic |
| GCTATGATGAAGAGTGTGAC+CGG | 0.614264 | 4_2:-62883293 | Msa0613960:CDS |
| AGGAGGTTGGAAACTCGCGT+TGG | 0.618232 | 4_2:-62880624 | Msa0613960:CDS |
| ATTTAGATCCGAGTCACTCG+TGG | 0.620095 | 4_2:-62882920 | Msa0613960:intron |
| AAACTAGTTGAAAGACATGT+CGG | 0.621096 | 4_2:+62880583 | None:intergenic |
| CCATTCAAGTAAATTAGAGA+AGG | 0.623380 | 4_2:-62880491 | Msa0613960:CDS |
| GTACTGTATATAAGGAACGT+GGG | 0.627838 | 4_2:+62883422 | None:intergenic |
| AAAAGAAATTCCTCAAGACG+TGG | 0.635871 | 4_2:+62882739 | None:intergenic |
| TACTGTATATAAGGAACGTG+GGG | 0.639069 | 4_2:+62883423 | None:intergenic |
| TTCCTCCATATTCTCAATGG+AGG | 0.644319 | 4_2:+62883341 | None:intergenic |
| AATTCAAAATATAAAAGCTG+AGG | 0.652556 | 4_2:-62880539 | Msa0613960:CDS |
| TGTACTGTATATAAGGAACG+TGG | 0.656635 | 4_2:+62883421 | None:intergenic |
| AAAGAAATTCCTCAAGACGT+GGG | 0.667148 | 4_2:+62882740 | None:intergenic |
| CTCCTCCATTGAGAATATGG+AGG | 0.667403 | 4_2:-62883343 | Msa0613960:CDS |
| TTATACATACCGCAATGACA+AGG | 0.683238 | 4_2:+62882171 | None:intergenic |
| AGCCAAGAAACTCAAAACAG+TGG | 0.691660 | 4_2:-62883319 | Msa0613960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAAAAATAACATAT+AGG | + | chr4_2:62881430-62881449 | None:intergenic | 10.0% |
| !!! | TTTAATGATAAAAAGTATTT+AGG | - | chr4_2:62881672-62881691 | Msa0613960:intron | 10.0% |
| !!! | TTAATGATAAAAAGTATTTA+GGG | - | chr4_2:62881673-62881692 | Msa0613960:intron | 10.0% |
| !! | TATATATATATATATAACTC+GGG | + | chr4_2:62881810-62881829 | None:intergenic | 10.0% |
| !!! | ATTTTGAATAAAATATCATA+AGG | + | chr4_2:62882085-62882104 | None:intergenic | 10.0% |
| !! | TTTAATAGAATTAATAATCG+AGG | + | chr4_2:62880388-62880407 | None:intergenic | 15.0% |
| !!! | TACATATTTTTTTTTTTGGA+AGG | - | chr4_2:62881381-62881400 | Msa0613960:intron | 15.0% |
| !! | TTAGTTATTGAAAAATAAGA+AGG | + | chr4_2:62881733-62881752 | None:intergenic | 15.0% |
| !! | AGGTTTGTATTATTAAAAAT+GGG | + | chr4_2:62882065-62882084 | None:intergenic | 15.0% |
| !! | AAGGTTTGTATTATTAAAAA+TGG | + | chr4_2:62882066-62882085 | None:intergenic | 15.0% |
| !! | TTAATTACGTTTGAATTTAA+AGG | - | chr4_2:62883209-62883228 | Msa0613960:intron | 15.0% |
| !!! | ATATACAGATTTAATTTCTG+TGG | + | chr4_2:62880661-62880680 | None:intergenic | 20.0% |
| !! | AGTTTACATATACTCTTAAA+AGG | - | chr4_2:62881290-62881309 | Msa0613960:intron | 20.0% |
| !! | AACATATAGGTAACAAAATA+TGG | + | chr4_2:62881417-62881436 | None:intergenic | 20.0% |
| !! | ATTATGTTGTCAAAAAACAT+GGG | + | chr4_2:62881702-62881721 | None:intergenic | 20.0% |
| !! | TATTATGTTGTCAAAAAACA+TGG | + | chr4_2:62881703-62881722 | None:intergenic | 20.0% |
| !!! | TTTTTTGACAACATAATATC+TGG | - | chr4_2:62881705-62881724 | Msa0613960:intron | 20.0% |
| !!! | ATACCATACATACAAAATTT+TGG | + | chr4_2:62881842-62881861 | None:intergenic | 20.0% |
| !! | TTAAGATATTTGTTCCATAT+CGG | + | chr4_2:62881888-62881907 | None:intergenic | 20.0% |
| !! | TTTGTGCATCTATTAATTTA+CGG | + | chr4_2:62881954-62881973 | None:intergenic | 20.0% |
| !! | CTAAATTCAGTTAATTTCAT+TGG | + | chr4_2:62881977-62881996 | None:intergenic | 20.0% |
| !!! | TGTATTATTAAAAATGGGTT+CGG | + | chr4_2:62882060-62882079 | None:intergenic | 20.0% |
| !! | TTGATAAATGTTTATTTGAG+AGG | - | chr4_2:62882180-62882199 | Msa0613960:intron | 20.0% |
| !! | ATTTATAGTAAGAATTACAG+AGG | + | chr4_2:62882303-62882322 | None:intergenic | 20.0% |
| !! | AAATTTCAAGAATGATTGAA+GGG | + | chr4_2:62882372-62882391 | None:intergenic | 20.0% |
| !!! | AAAAGCCTAACTTTAATTTT+TGG | - | chr4_2:62883080-62883099 | Msa0613960:CDS | 20.0% |
| !! | CAATACCAAAAATTAAAGTT+AGG | + | chr4_2:62883088-62883107 | None:intergenic | 20.0% |
| !! | TAAAAAAAACTCTCAAAGAA+AGG | - | chr4_2:62883127-62883146 | Msa0613960:intron | 20.0% |
| !! | AATTCAAAATATAAAAGCTG+AGG | - | chr4_2:62883232-62883251 | Msa0613960:CDS | 20.0% |
| !! | ACAGAAAAATTCAAAGAAAT+CGG | - | chr4_2:62883316-62883335 | Msa0613960:CDS | 20.0% |
| !! | ACAGAAAAATTCAAAGAAAT+CGG | - | chr4_2:62883316-62883335 | Msa0613960:CDS | 20.0% |
| ! | AAGTGTTCTATCTAAAAGAT+GGG | - | chr4_2:62880572-62880591 | Msa0613960:CDS | 25.0% |
| !!! | ATCTAAGCTTGATTTTAATG+AGG | - | chr4_2:62880968-62880987 | Msa0613960:intron | 25.0% |
| ! | TTTATCAACTCGTATTCTTT+GGG | + | chr4_2:62881215-62881234 | None:intergenic | 25.0% |
| ! | ACAATAATTCATGAAAGGTA+AGG | + | chr4_2:62881501-62881520 | None:intergenic | 25.0% |
| ! | CAAAGACAATAATTCATGAA+AGG | + | chr4_2:62881506-62881525 | None:intergenic | 25.0% |
| ! | TCATGAATTATTGTCTTTGT+CGG | - | chr4_2:62881507-62881526 | Msa0613960:intron | 25.0% |
| ! | TTTAAACTAGTGTATTTACC+CGG | - | chr4_2:62881779-62881798 | Msa0613960:intron | 25.0% |
| !! | TGACCAAAATTTTGTATGTA+TGG | - | chr4_2:62881836-62881855 | Msa0613960:intron | 25.0% |
| ! | TTCACAAACAAAATTTACCA+CGG | - | chr4_2:62881861-62881880 | Msa0613960:intron | 25.0% |
| ! | TTGTGCATCTATTAATTTAC+GGG | + | chr4_2:62881953-62881972 | None:intergenic | 25.0% |
| ! | ATAAATGTTTATTTGAGAGG+TGG | - | chr4_2:62882183-62882202 | Msa0613960:CDS | 25.0% |
| ! | AGATCAAGATATGTACAAAA+GGG | + | chr4_2:62882277-62882296 | None:intergenic | 25.0% |
| ! | AAGATCAAGATATGTACAAA+AGG | + | chr4_2:62882278-62882297 | None:intergenic | 25.0% |
| ! | TTACTATAAATACTACGATC+CGG | - | chr4_2:62882312-62882331 | Msa0613960:CDS | 25.0% |
| ! | CAAATTTCAAGAATGATTGA+AGG | + | chr4_2:62882373-62882392 | None:intergenic | 25.0% |
| !!! | GTGAGTTTTGTGTTTTTAAA+TGG | - | chr4_2:62882440-62882459 | Msa0613960:CDS | 25.0% |
| ! | GTAGAAAGAAATTTACTCAA+GGG | - | chr4_2:62883395-62883414 | Msa0613960:CDS | 25.0% |
| ! | TAGAAAGAAATTTACTCAAG+GGG | - | chr4_2:62883396-62883415 | Msa0613960:CDS | 25.0% |
| CAAGTGTTCTATCTAAAAGA+TGG | - | chr4_2:62880571-62880590 | Msa0613960:CDS | 30.0% | |
| CTTCTGGTATTTCAAAGTTA+AGG | + | chr4_2:62880623-62880642 | None:intergenic | 30.0% | |
| CTACGTCTACATAATTATGA+TGG | - | chr4_2:62880717-62880736 | Msa0613960:intron | 30.0% | |
| TCAAAAGAAGAATCAAGTGT+TGG | + | chr4_2:62880909-62880928 | None:intergenic | 30.0% | |
| !! | AAGCTTGATTTTAATGAGGA+TGG | - | chr4_2:62880972-62880991 | Msa0613960:intron | 30.0% |
| GATCTTCTTGAATTACTATC+TGG | - | chr4_2:62881005-62881024 | Msa0613960:intron | 30.0% | |
| !! | CTTGAGGAATTTCTTTTTCA+TGG | - | chr4_2:62881038-62881057 | Msa0613960:intron | 30.0% |
| AAGGGAAAAGAGATATTGAT+AGG | + | chr4_2:62881077-62881096 | None:intergenic | 30.0% | |
| CAGAAAACTTCCAAAAATTG+AGG | + | chr4_2:62881115-62881134 | None:intergenic | 30.0% | |
| !! | TTTTGGAAGTTTTCTGATAG+TGG | - | chr4_2:62881119-62881138 | Msa0613960:intron | 30.0% |
| !! | TTAATTTGCAAGGTTCCAAT+GGG | + | chr4_2:62881149-62881168 | None:intergenic | 30.0% |
| !! | ATTAATTTGCAAGGTTCCAA+TGG | + | chr4_2:62881150-62881169 | None:intergenic | 30.0% |
| GTTTATCAACTCGTATTCTT+TGG | + | chr4_2:62881216-62881235 | None:intergenic | 30.0% | |
| CTTAATTGTTTCAGAAGTGA+GGG | + | chr4_2:62881339-62881358 | None:intergenic | 30.0% | |
| !! | TGTTATGCAGTTTTTAAGCA+TGG | - | chr4_2:62881450-62881469 | Msa0613960:intron | 30.0% |
| GATCAAGATATGTACAAAAG+GGG | + | chr4_2:62882276-62882295 | None:intergenic | 30.0% | |
| !! | AAAACTCACTGCAGTTTTAA+AGG | + | chr4_2:62882429-62882448 | None:intergenic | 30.0% |
| !! | AGTTGTTGCTTGCTATAATT+AGG | - | chr4_2:62882572-62882591 | Msa0613960:CDS | 30.0% |
| TTAGGATGACATCATTACTT+TGG | - | chr4_2:62882590-62882609 | Msa0613960:CDS | 30.0% | |
| ! | AGACAAAATTGTGCTTTTGT+TGG | - | chr4_2:62882641-62882660 | Msa0613960:CDS | 30.0% |
| ! | AGACAAAATTGTGCTTTTGT+TGG | - | chr4_2:62882641-62882660 | Msa0613960:CDS | 30.0% |
| AGATAAATCACTGATCGATA+CGG | - | chr4_2:62882759-62882778 | Msa0613960:CDS | 30.0% | |
| ATAGATAGATAGTGTCTACA+TGG | + | chr4_2:62883046-62883065 | None:intergenic | 30.0% | |
| AAAAAACTCTCAAAGAAAGG+AGG | - | chr4_2:62883130-62883149 | Msa0613960:intron | 30.0% | |
| AAACTAGTTGAAAGACATGT+CGG | + | chr4_2:62883191-62883210 | None:intergenic | 30.0% | |
| TCAAAATATAAAAGCTGAGG+TGG | - | chr4_2:62883235-62883254 | Msa0613960:CDS | 30.0% | |
| CCTTCTCTAATTTACTTGAA+TGG | + | chr4_2:62883283-62883302 | None:intergenic | 30.0% | |
| CCATTCAAGTAAATTAGAGA+AGG | - | chr4_2:62883280-62883299 | Msa0613960:CDS | 30.0% | |
| GGTAGAAAGAAAATTAGAGA+AGG | - | chr4_2:62883337-62883356 | Msa0613960:CDS | 30.0% | |
| GGTAGAAAGAAATTTACTCA+AGG | - | chr4_2:62883394-62883413 | Msa0613960:CDS | 30.0% | |
| AGAAATCATCAACACTAGTA+TGG | - | chr4_2:62883423-62883442 | Msa0613960:CDS | 30.0% | |
| GAAATCATCAACACTAGTAT+GGG | - | chr4_2:62883424-62883443 | Msa0613960:CDS | 30.0% | |
| TACTGTATATAAGGAACGTG+GGG | + | chr4_2:62880351-62880370 | None:intergenic | 35.0% | |
| GTACTGTATATAAGGAACGT+GGG | + | chr4_2:62880352-62880371 | None:intergenic | 35.0% | |
| TGTACTGTATATAAGGAACG+TGG | + | chr4_2:62880353-62880372 | None:intergenic | 35.0% | |
| ACGTTCCTTATATACAGTAC+AGG | - | chr4_2:62880352-62880371 | Msa0613960:CDS | 35.0% | |
| TCAAGCCTGTACTGTATATA+AGG | + | chr4_2:62880360-62880379 | None:intergenic | 35.0% | |
| ATATTCTCAATGGAGGAGAT+TGG | + | chr4_2:62880426-62880445 | None:intergenic | 35.0% | |
| AATCTCCTCCATTGAGAATA+TGG | - | chr4_2:62880425-62880444 | Msa0613960:CDS | 35.0% | |
| !!! | ATCTGTATGCTGCTTTTGTT+GGG | + | chr4_2:62880551-62880570 | None:intergenic | 35.0% |
| GTATTTCAAAGTTAAGGTCG+AGG | + | chr4_2:62880617-62880636 | None:intergenic | 35.0% | |
| GAAATACCAGAAGTAGTTTC+AGG | - | chr4_2:62880630-62880649 | Msa0613960:CDS | 35.0% | |
| !! | TTCAAAGGCATTAGATCTCA+AGG | - | chr4_2:62880770-62880789 | Msa0613960:intron | 35.0% |
| AGATGAAGAATCTTTAGCGA+TGG | + | chr4_2:62880942-62880961 | None:intergenic | 35.0% | |
| AAAGAAATTCCTCAAGACGT+GGG | + | chr4_2:62881034-62881053 | None:intergenic | 35.0% | |
| AAAAGAAATTCCTCAAGACG+TGG | + | chr4_2:62881035-62881054 | None:intergenic | 35.0% | |
| ! | TCTCTTTTCCCTTGTTAACA+AGG | - | chr4_2:62881084-62881103 | Msa0613960:intron | 35.0% |
| AGGTCTAACCTTGTTAACAA+GGG | + | chr4_2:62881095-62881114 | None:intergenic | 35.0% | |
| ! | CAAGGTTAGACCTCAATTTT+TGG | - | chr4_2:62881102-62881121 | Msa0613960:intron | 35.0% |
| CCTTAATTGTTTCAGAAGTG+AGG | + | chr4_2:62881340-62881359 | None:intergenic | 35.0% | |
| !! | CCTCACTTCTGAAACAATTA+AGG | - | chr4_2:62881337-62881356 | Msa0613960:intron | 35.0% |
| !! | TATGCAGTTTTTAAGCATGG+AGG | - | chr4_2:62881453-62881472 | Msa0613960:intron | 35.0% |
| GAATTATTGTCTTTGTCGGT+TGG | - | chr4_2:62881511-62881530 | Msa0613960:intron | 35.0% | |
| GAATATCCGAGAATTGCAAT+TGG | - | chr4_2:62881533-62881552 | Msa0613960:intron | 35.0% | |
| CACATTCCAATTGCAATTCT+CGG | + | chr4_2:62881542-62881561 | None:intergenic | 35.0% | |
| TCAAAATGCTCCTAAGCTTA+AGG | - | chr4_2:62881576-62881595 | Msa0613960:intron | 35.0% | |
| TTATACATACCGCAATGACA+AGG | + | chr4_2:62881603-62881622 | None:intergenic | 35.0% | |
| ATATGTACAAAAGGGGATTG+AGG | + | chr4_2:62882269-62882288 | None:intergenic | 35.0% | |
| GATGGGTATTCGATAAGTAT+TGG | + | chr4_2:62882350-62882369 | None:intergenic | 35.0% | |
| TCAAGAATGATTGAAGGGAT+GGG | + | chr4_2:62882367-62882386 | None:intergenic | 35.0% | |
| TTCAAGAATGATTGAAGGGA+TGG | + | chr4_2:62882368-62882387 | None:intergenic | 35.0% | |
| GTTACTGTAGTGACAAAAAG+AGG | - | chr4_2:62882401-62882420 | Msa0613960:intron | 35.0% | |
| CTTCTATCATGTCGTTCTTT+CGG | - | chr4_2:62882471-62882490 | Msa0613960:CDS | 35.0% | |
| !!! | TTGTTTTTGTAGCTATAGCG+TGG | - | chr4_2:62882514-62882533 | Msa0613960:intron | 35.0% |
| !! | GATTCTGAGACATAGCTAAT+TGG | + | chr4_2:62882619-62882638 | None:intergenic | 35.0% |
| TTCCTCCATATTCTCAATGG+AGG | + | chr4_2:62880433-62880452 | None:intergenic | 40.0% | |
| AGCCAAGAAACTCAAAACAG+TGG | - | chr4_2:62880452-62880471 | Msa0613960:CDS | 40.0% | |
| !!! | AGCCACTGTTTTGAGTTTCT+TGG | + | chr4_2:62880457-62880476 | None:intergenic | 40.0% |
| !!! | GATCTGTATGCTGCTTTTGT+TGG | + | chr4_2:62880552-62880571 | None:intergenic | 40.0% |
| AGGAACTTCACTTGGAGTTT+GGG | - | chr4_2:62880796-62880815 | Msa0613960:intron | 40.0% | |
| ! | ATAGCCTTAGCGGCAATATA+GGG | + | chr4_2:62880833-62880852 | None:intergenic | 40.0% |
| ! | AATAGCCTTAGCGGCAATAT+AGG | + | chr4_2:62880834-62880853 | None:intergenic | 40.0% |
| ! | TCGGATCTAAATAGCCTTAG+CGG | + | chr4_2:62880843-62880862 | None:intergenic | 40.0% |
| !!! | TTTTAAGACCACGAGTGACT+CGG | + | chr4_2:62880862-62880881 | None:intergenic | 40.0% |
| ! | CTCGTGGTCTTAAAATTGCT+TGG | - | chr4_2:62880867-62880886 | Msa0613960:intron | 40.0% |
| GAGGTCTAACCTTGTTAACA+AGG | + | chr4_2:62881096-62881115 | None:intergenic | 40.0% | |
| !! | TGACGGGACATTAATTTGCA+AGG | + | chr4_2:62881159-62881178 | None:intergenic | 40.0% |
| TCCAAAACTTCGAGTGATGA+CGG | + | chr4_2:62881176-62881195 | None:intergenic | 40.0% | |
| TGCAATTGGAATGTGCTTGT+TGG | - | chr4_2:62881547-62881566 | Msa0613960:intron | 40.0% | |
| ATGACAAGGTCCTTAAGCTT+AGG | + | chr4_2:62881589-62881608 | None:intergenic | 40.0% | |
| AAATTTACCACGGACCGATA+TGG | - | chr4_2:62881871-62881890 | Msa0613960:intron | 40.0% | |
| TCTCACCAAACTATCCATTC+CGG | - | chr4_2:62882233-62882252 | Msa0613960:CDS | 40.0% | |
| TTTCTCCGGAATGGATAGTT+TGG | + | chr4_2:62882241-62882260 | None:intergenic | 40.0% | |
| TTTCGGATTGCGCATCAAAT+GGG | - | chr4_2:62882488-62882507 | Msa0613960:intron | 40.0% | |
| AGCTATAGCGTGGATACTTT+CGG | - | chr4_2:62882524-62882543 | Msa0613960:CDS | 40.0% | |
| AAATCACTGATCGATACGGT+TGG | - | chr4_2:62882763-62882782 | Msa0613960:CDS | 40.0% | |
| !! | TATGTCATGTGTCGCTTCTA+CGG | + | chr4_2:62882982-62883001 | None:intergenic | 40.0% |
| AACTCTCAAAGAAAGGAGGT+TGG | - | chr4_2:62883134-62883153 | Msa0613960:intron | 40.0% | |
| CTCCTCCATTGAGAATATGG+AGG | - | chr4_2:62880428-62880447 | Msa0613960:CDS | 45.0% | |
| GGCTTCCTCCATATTCTCAA+TGG | + | chr4_2:62880436-62880455 | None:intergenic | 45.0% | |
| ! | GCTATGATGAAGAGTGTGAC+CGG | - | chr4_2:62880478-62880497 | Msa0613960:CDS | 45.0% |
| TAGCGATCTCTCAGACGAAT+TGG | - | chr4_2:62880503-62880522 | Msa0613960:CDS | 45.0% | |
| !!! | TGTATGCTGCTTTTGTTGGG+AGG | + | chr4_2:62880548-62880567 | None:intergenic | 45.0% |
| AAAGTTAAGGTCGAGGATCG+TGG | + | chr4_2:62880610-62880629 | None:intergenic | 45.0% | |
| GACGAACCTGAAACTACTTC+TGG | + | chr4_2:62880639-62880658 | None:intergenic | 45.0% | |
| AACCATGTGACGTACACTTG+TGG | - | chr4_2:62880745-62880764 | Msa0613960:intron | 45.0% | |
| ACCATGTGACGTACACTTGT+GGG | - | chr4_2:62880746-62880765 | Msa0613960:intron | 45.0% | |
| CGTACACTTGTGGGTTTCAA+AGG | - | chr4_2:62880755-62880774 | Msa0613960:intron | 45.0% | |
| GGCATTAGATCTCAAGGTAC+AGG | - | chr4_2:62880776-62880795 | Msa0613960:intron | 45.0% | |
| CAAGGTACAGGAACTTCACT+TGG | - | chr4_2:62880788-62880807 | Msa0613960:intron | 45.0% | |
| CAGGAACTTCACTTGGAGTT+TGG | - | chr4_2:62880795-62880814 | Msa0613960:intron | 45.0% | |
| CTTAGCGGCAATATAGGGTT+AGG | + | chr4_2:62880828-62880847 | None:intergenic | 45.0% | |
| CTAACCCTATATTGCCGCTA+AGG | - | chr4_2:62880826-62880845 | Msa0613960:intron | 45.0% | |
| ATTTAGATCCGAGTCACTCG+TGG | - | chr4_2:62880851-62880870 | Msa0613960:intron | 45.0% | |
| !! | TCTGATAGTGGTTCTCCCAT+TGG | - | chr4_2:62881131-62881150 | Msa0613960:intron | 45.0% |
| CCAAAACTTCGAGTGATGAC+GGG | + | chr4_2:62881175-62881194 | None:intergenic | 45.0% | |
| GCTTAAGGACCTTGTCATTG+CGG | - | chr4_2:62881591-62881610 | Msa0613960:intron | 45.0% | |
| ATATATAACTCGGGCAACGC+CGG | + | chr4_2:62881801-62881820 | None:intergenic | 45.0% | |
| ATTTGTTCCATATCGGTCCG+TGG | + | chr4_2:62881881-62881900 | None:intergenic | 45.0% | |
| ! | TAGTTTGGTGAGAGCTTGAG+AGG | + | chr4_2:62882226-62882245 | None:intergenic | 45.0% |
| TGTACAAAAGGGGATTGAGG+AGG | + | chr4_2:62882266-62882285 | None:intergenic | 45.0% | |
| ! | GTATTGGCGATGATGTAGTC+CGG | + | chr4_2:62882334-62882353 | None:intergenic | 45.0% |
| CTTTCGGATTGCGCATCAAA+TGG | - | chr4_2:62882487-62882506 | Msa0613960:intron | 45.0% | |
| CGTGGATACTTTCGGTTGAA+GGG | - | chr4_2:62882532-62882551 | Msa0613960:CDS | 45.0% | |
| !!! | ATTATACATATTTTTTTTTT+TGG | - | chr4_2:62881377-62881396 | Msa0613960:intron | 5.0% |
| !! | TTATATATATATATATAACT+CGG | + | chr4_2:62881811-62881830 | None:intergenic | 5.0% |
| !! | GTTATATATATATATATAAA+AGG | - | chr4_2:62881812-62881831 | Msa0613960:intron | 5.0% |
| CGTCTGAGAGATCGCTAAAC+CGG | + | chr4_2:62880500-62880519 | None:intergenic | 50.0% | |
| ACCCACAAGTGTACGTCACA+TGG | + | chr4_2:62880750-62880769 | None:intergenic | 50.0% | |
| ! | CCCGTCATCACTCGAAGTTT+TGG | - | chr4_2:62881172-62881191 | Msa0613960:intron | 50.0% |
| TATATAACTCGGGCAACGCC+GGG | + | chr4_2:62881800-62881819 | None:intergenic | 50.0% | |
| GTTCGGAATTCTGCGAGTTC+GGG | + | chr4_2:62882043-62882062 | None:intergenic | 50.0% | |
| GGTTCGGAATTCTGCGAGTT+CGG | + | chr4_2:62882044-62882063 | None:intergenic | 50.0% | |
| TTTGGTGAGAGCTTGAGAGG+TGG | + | chr4_2:62882223-62882242 | None:intergenic | 50.0% | |
| GGATTGAGGAGGAGTTTCTC+CGG | + | chr4_2:62882255-62882274 | None:intergenic | 50.0% | |
| GCGTGGATACTTTCGGTTGA+AGG | - | chr4_2:62882531-62882550 | Msa0613960:CDS | 50.0% | |
| ATCTGGTTGCCCACGTCTTG+AGG | - | chr4_2:62881022-62881041 | Msa0613960:intron | 55.0% | |
| GAGGAGGAGTTTCTCCGGAA+TGG | + | chr4_2:62882250-62882269 | None:intergenic | 55.0% | |
| AGGAGGTTGGAAACTCGCGT+TGG | - | chr4_2:62883147-62883166 | Msa0613960:intron | 55.0% | |
| GGAGGTTGGAAACTCGCGTT+GGG | - | chr4_2:62883148-62883167 | Msa0613960:intron | 55.0% | |
| GTTGGAAACTCGCGTTGGGT+GGG | - | chr4_2:62883152-62883171 | Msa0613960:intron | 55.0% | |
| AGACATGTCGGAGTCGTCGA+TGG | + | chr4_2:62883179-62883198 | None:intergenic | 55.0% | |
| AGCTTGAGAGGTGGAGGTGG+AGG | + | chr4_2:62882214-62882233 | None:intergenic | 60.0% | |
| GAGAGCTTGAGAGGTGGAGG+TGG | + | chr4_2:62882217-62882236 | None:intergenic | 60.0% | |
| GGTGAGAGCTTGAGAGGTGG+AGG | + | chr4_2:62882220-62882239 | None:intergenic | 60.0% | |
| GGTTGGAAACTCGCGTTGGG+TGG | - | chr4_2:62883151-62883170 | Msa0613960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 62880345 | 62883448 | 62880345 | ID=Msa0613960;Name=Msa0613960 |
| chr4_2 | mRNA | 62880345 | 62883448 | 62880345 | ID=Msa0613960-mRNA-1;Parent=Msa0613960;Name=Msa0613960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.16|0.14|7|0|438 |
| chr4_2 | exon | 62883220 | 62883448 | 62883220 | ID=Msa0613960-mRNA-1:exon:17472;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62882921 | 62883141 | 62882921 | ID=Msa0613960-mRNA-1:exon:17471;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62882697 | 62882842 | 62882697 | ID=Msa0613960-mRNA-1:exon:17470;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62882520 | 62882687 | 62882520 | ID=Msa0613960-mRNA-1:exon:17469;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62882435 | 62882501 | 62882435 | ID=Msa0613960-mRNA-1:exon:17468;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62882181 | 62882333 | 62882181 | ID=Msa0613960-mRNA-1:exon:17467;Parent=Msa0613960-mRNA-1 |
| chr4_2 | exon | 62880345 | 62880674 | 62880345 | ID=Msa0613960-mRNA-1:exon:17466;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62883220 | 62883448 | 62883220 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62882921 | 62883141 | 62882921 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62882697 | 62882842 | 62882697 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62882520 | 62882687 | 62882520 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62882435 | 62882501 | 62882435 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62882181 | 62882333 | 62882181 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| chr4_2 | CDS | 62880345 | 62880674 | 62880345 | ID=Msa0613960-mRNA-1:cds;Parent=Msa0613960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
