Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614570 | XP_013457215.2 | 87.013 | 385 | 25 | 4 | 1 | 363 | 1 | 382 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0614570 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614570 | Msa0639210 | 0.944591 | 1.470155e-103 | -8.615850e-47 |
| Msa0559680 | Msa0614570 | 0.823504 | 1.336475e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614570 | MtrunA17_Chr4g0050631 | 87.013 | 385 | 25 | 4 | 1 | 363 | 1 | 382 | 0.0 | 597 |
| Msa0614570 | MtrunA17_Chr4g0050971 | 73.626 | 91 | 21 | 2 | 274 | 361 | 9 | 99 | 3.82e-39 | 134 |
| Msa0614570 | MtrunA17_Chr4g0050651 | 71.739 | 92 | 22 | 3 | 274 | 361 | 9 | 100 | 9.53e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 127 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCAATTCTCCGATTTA+TGG | 0.116513 | 4_2:+63637452 | Msa0614570:CDS |
| GTTAGTGCAGAGAGAGAAAA+TGG | 0.217124 | 4_2:-63636886 | None:intergenic |
| TCAGCTACTTCAGTGGTTTC+AGG | 0.236813 | 4_2:-63641222 | None:intergenic |
| CGATAGTGACGCAGGTTTAA+AGG | 0.242843 | 4_2:-63636774 | None:intergenic |
| AGAAATTACAAGCTCGAAAA+TGG | 0.249703 | 4_2:-63636939 | None:intergenic |
| TCATCATCTTCTTCTTCTTC+TGG | 0.266781 | 4_2:+63637722 | Msa0614570:CDS |
| TCAGCTACTTCAGCGGATTC+AGG | 0.301044 | 4_2:-63641108 | None:intergenic |
| GCATGAGTGCGATGAGGTTC+AGG | 0.301934 | 4_2:-63641177 | None:intergenic |
| CCGTACTCCGGCAACAGTTC+AGG | 0.302302 | 4_2:+63637506 | Msa0614570:CDS |
| CGCAGGTTTAAAGGCGGTTT+AGG | 0.307176 | 4_2:-63636765 | None:intergenic |
| TATTGTGATGGATGATATTC+AGG | 0.326560 | 4_2:+63637658 | Msa0614570:CDS |
| TCAGGAACAATGCGGCTATC+CGG | 0.378472 | 4_2:-63641204 | None:intergenic |
| GGAACTCTGTCTGAACCATT+TGG | 0.381458 | 4_2:-63641375 | None:intergenic |
| CTGTTCTTTCCTCCTGACAT+TGG | 0.382703 | 4_2:-63637686 | None:intergenic |
| CTGGACTCATCGTTGTTGAT+TGG | 0.383003 | 4_2:-63637325 | None:intergenic |
| GAGGTTCAGGGGAAGCTGGC+TGG | 0.386384 | 4_2:-63641164 | None:intergenic |
| GCGGGAACAAACCTGGCATT+TGG | 0.389416 | 4_2:-63637846 | None:intergenic |
| GCCGAGAACTTCGACGTTAC+CGG | 0.389780 | 4_2:+63637365 | Msa0614570:CDS |
| TGAAGAAGGTTTCCAAGTTA+AGG | 0.391044 | 4_2:+63637237 | Msa0614570:CDS |
| GCTTTCTTCAATTGAGAACT+TGG | 0.392003 | 4_2:+63637574 | Msa0614570:CDS |
| TCAGGAACAATGCGACTATC+CGG | 0.396662 | 4_2:-63641090 | None:intergenic |
| AATCTCATATTTATAGTTTG+CGG | 0.409250 | 4_2:-63636801 | None:intergenic |
| TCCGCTGAAGTAGCTGAATC+TGG | 0.412882 | 4_2:+63641114 | Msa0614570:CDS |
| CTGATGGTGTTGGGATTGAC+AGG | 0.416902 | 4_2:-63641312 | None:intergenic |
| TGCAGAGCATGGGAGGAATC+TGG | 0.420303 | 4_2:+63637806 | Msa0614570:CDS |
| CTCGTTCGAAGTCCTTAACT+TGG | 0.422674 | 4_2:-63637249 | None:intergenic |
| CTTTATTGTGTAGGCACAGA+TGG | 0.423817 | 4_2:+63641029 | Msa0614570:intron |
| GAACTCTGTCTGAACCATTT+GGG | 0.424835 | 4_2:-63641374 | None:intergenic |
| TGGCCGTTTCATCGTGTGGT+AGG | 0.437629 | 4_2:-63636909 | None:intergenic |
| GCCGGTAACGTCGAAGTTCT+CGG | 0.438838 | 4_2:-63637366 | None:intergenic |
| GCGGCGTAGGGTTGAAAACC+TGG | 0.445857 | 4_2:-63637344 | None:intergenic |
| TACTTACTGGAGCCATAAAT+CGG | 0.446103 | 4_2:-63637464 | None:intergenic |
| CAGGAACAATGCGGCTATCC+GGG | 0.448018 | 4_2:-63641203 | None:intergenic |
| AACAATGCGGCTATCCGGGC+TGG | 0.449752 | 4_2:-63641199 | None:intergenic |
| AGATTGAGGCGAAGTTGGTT+GGG | 0.456658 | 4_2:-63641280 | None:intergenic |
| CGATGAGATTGAGGCGAAGT+TGG | 0.457573 | 4_2:-63641285 | None:intergenic |
| AGGTTCAGGGGAAGCTGGCT+GGG | 0.458963 | 4_2:-63641163 | None:intergenic |
| CAGCCTCAATGCCATCATCC+AGG | 0.459441 | 4_2:-63641347 | None:intergenic |
| AGAAGGAGGTTTGCAGAGCA+TGG | 0.460342 | 4_2:+63637795 | Msa0614570:CDS |
| GAGATTGAGGCGAAGTTGGT+TGG | 0.460421 | 4_2:-63641281 | None:intergenic |
| CCTGAACTGTTGCCGGAGTA+CGG | 0.462019 | 4_2:-63637506 | None:intergenic |
| ATTGAGGCTGTCCTCCCAAA+TGG | 0.462042 | 4_2:+63641360 | Msa0614570:CDS |
| GAGTGTGTTGTTTAAGAAGG+AGG | 0.464562 | 4_2:+63637781 | Msa0614570:CDS |
| TGACCAGTCGCTGATGGTGT+TGG | 0.464996 | 4_2:-63641322 | None:intergenic |
| GAAGAGTGTGTTGTTTAAGA+AGG | 0.469448 | 4_2:+63637778 | Msa0614570:CDS |
| AGCGAGCTGCGACGGCGAGC+CGG | 0.471289 | 4_2:-63637384 | None:intergenic |
| AGTGTTTGCGGCACTTTGCG+AGG | 0.476892 | 4_2:+63641467 | Msa0614570:CDS |
| GACCAGTCGCTGATGGTGTT+GGG | 0.478745 | 4_2:-63641321 | None:intergenic |
| AACCCTACCACACGATGAAA+CGG | 0.479706 | 4_2:+63636906 | Msa0614570:five_prime_UTR |
| TCACTGGATTTAGCAGAAAT+CGG | 0.480187 | 4_2:-63637428 | None:intergenic |
| AGCTCGAAAATGGAGATTCA+TGG | 0.482152 | 4_2:-63636929 | None:intergenic |
| CGATGAGGTTCAGGGGAAGC+TGG | 0.482193 | 4_2:-63641168 | None:intergenic |
| GTGTTTGCGGCACTTTGCGA+GGG | 0.482529 | 4_2:+63641468 | Msa0614570:CDS |
| TCGAAGTTCTCGGCGGCGTA+GGG | 0.488149 | 4_2:-63637356 | None:intergenic |
| AAGAAGACTACCAGTGTTTG+CGG | 0.493423 | 4_2:+63641455 | Msa0614570:CDS |
| CGGAGAATTGAATGAGTCAC+TGG | 0.498104 | 4_2:-63637444 | None:intergenic |
| GGCCGTTTCATCGTGTGGTA+GGG | 0.499268 | 4_2:-63636908 | None:intergenic |
| CATGAGTGCGATGAGGTTCA+GGG | 0.509014 | 4_2:-63641176 | None:intergenic |
| GACTGGTCACCCCTGGATGA+TGG | 0.509897 | 4_2:+63641336 | Msa0614570:CDS |
| CGTACTCCGGCAACAGTTCA+GGG | 0.510086 | 4_2:+63637507 | Msa0614570:CDS |
| GATGTATCAGACGCCGGTGA+AGG | 0.511807 | 4_2:+63637622 | Msa0614570:CDS |
| GTCGAAGTTCTCGGCGGCGT+AGG | 0.512563 | 4_2:-63637357 | None:intergenic |
| CTTGCAAGTCTTGTGACTAC+AGG | 0.513276 | 4_2:-63641255 | None:intergenic |
| GAAGGAGGTTTGCAGAGCAT+GGG | 0.513507 | 4_2:+63637796 | Msa0614570:CDS |
| TCATCCAACTCGATCATCAA+TGG | 0.518876 | 4_2:-63637281 | None:intergenic |
| CATCAGCGACTGGTCACCCC+TGG | 0.525662 | 4_2:+63641329 | Msa0614570:CDS |
| CTTGCAAGTCTTGTGACTAA+AGG | 0.531988 | 4_2:-63641138 | None:intergenic |
| ATTCAGGTGAGGCCAATGTC+AGG | 0.532076 | 4_2:+63637674 | Msa0614570:CDS |
| GTTCAGACAGAGTTCCCTCT+AGG | 0.542921 | 4_2:+63641382 | Msa0614570:CDS |
| GGAGGTTTGCAGAGCATGGG+AGG | 0.543989 | 4_2:+63637799 | Msa0614570:CDS |
| TTCATGGCCGTTTCATCGTG+TGG | 0.544236 | 4_2:-63636913 | None:intergenic |
| AAGTATTTAGCGAGCTGCGA+CGG | 0.544538 | 4_2:-63637392 | None:intergenic |
| TTTATGGCTCCAGTAAGTAC+AGG | 0.546704 | 4_2:+63637468 | Msa0614570:CDS |
| TCATCGCACTCATGCCAGCC+CGG | 0.549587 | 4_2:+63641185 | Msa0614570:CDS |
| CCGCTATGACTCCAAATGCC+AGG | 0.551499 | 4_2:+63637835 | Msa0614570:CDS |
| TTCGCCATTGATGATCGAGT+TGG | 0.551669 | 4_2:+63637277 | Msa0614570:CDS |
| AGCTGATTCAGCTACTTCAG+TGG | 0.552361 | 4_2:-63641229 | None:intergenic |
| AATGGAGAATGAGAGAAAAG+AGG | 0.555134 | 4_2:-63636868 | None:intergenic |
| CAGGGGTGACCAGTCGCTGA+TGG | 0.559234 | 4_2:-63641328 | None:intergenic |
| CAGGAACAATGCGACTATCC+GGG | 0.559706 | 4_2:-63641089 | None:intergenic |
| AGCCTCAATGCCATCATCCA+GGG | 0.563569 | 4_2:-63641346 | None:intergenic |
| CAATCAACAACGATGAGTCC+AGG | 0.566783 | 4_2:+63637326 | Msa0614570:CDS |
| GAACAACAGCAAGATGAAGA+AGG | 0.574444 | 4_2:+63637223 | Msa0614570:CDS |
| ACTCTTCGAAGACGAAGAAG+AGG | 0.574667 | 4_2:-63637762 | None:intergenic |
| TTTATTGTGTAGGCACAGAT+GGG | 0.576808 | 4_2:+63641030 | Msa0614570:intron |
| ACAGGGGTACGATGAGATTG+AGG | 0.577431 | 4_2:-63641294 | None:intergenic |
| ATGTATCAGACGCCGGTGAA+GGG | 0.578599 | 4_2:+63637623 | Msa0614570:CDS |
| TACTCCGGCAACAGTTCAGG+GGG | 0.579941 | 4_2:+63637509 | Msa0614570:CDS |
| TCGCAAAGTGCCGCAAACAC+TGG | 0.580686 | 4_2:-63641465 | None:intergenic |
| CTTCAATTGAGAACTTGGAG+AGG | 0.582756 | 4_2:+63637579 | Msa0614570:CDS |
| TTCAGACAGAGTTCCCTCTA+GGG | 0.586505 | 4_2:+63641383 | Msa0614570:CDS |
| AAGTTCTCAATTGAAGAAAG+CGG | 0.591154 | 4_2:-63637572 | None:intergenic |
| ACTGAAGTAGCTGAATCAGC+TGG | 0.591905 | 4_2:+63641231 | Msa0614570:CDS |
| ATCCCAACACCATCAGCGAC+TGG | 0.592240 | 4_2:+63641319 | Msa0614570:CDS |
| ACCCCTGGATGATGGCATTG+AGG | 0.599820 | 4_2:+63641344 | Msa0614570:CDS |
| ACTTCCTCACCACCCTTCAC+CGG | 0.613181 | 4_2:-63637635 | None:intergenic |
| GCATCAACTTCCTCCCTAGA+GGG | 0.614358 | 4_2:-63641396 | None:intergenic |
| CTCTGTCTGAACCATTTGGG+AGG | 0.615742 | 4_2:-63641371 | None:intergenic |
| GACGCCGGTGAAGGGTGGTG+AGG | 0.621390 | 4_2:+63637631 | Msa0614570:CDS |
| TGCATCAACTTCCTCCCTAG+AGG | 0.621656 | 4_2:-63641397 | None:intergenic |
| TGTTTGCGGCACTTTGCGAG+GGG | 0.624671 | 4_2:+63641469 | Msa0614570:CDS |
| AGGACTGTGCTTGTATGACC+CGG | 0.627217 | 4_2:+63641071 | Msa0614570:CDS |
| TATCAGACGCCGGTGAAGGG+TGG | 0.632611 | 4_2:+63637626 | Msa0614570:CDS |
| TGGTGAGGAAGTTATTGTGA+TGG | 0.633081 | 4_2:+63637646 | Msa0614570:CDS |
| TCCAGATTCAGCTACTTCAG+CGG | 0.639551 | 4_2:-63641115 | None:intergenic |
| AGACAGAGTTCCCTCTAGGG+AGG | 0.648644 | 4_2:+63641386 | Msa0614570:CDS |
| GCCTCAATGCCATCATCCAG+GGG | 0.652087 | 4_2:-63641345 | None:intergenic |
| TGATGGTGTTGGGATTGACA+GGG | 0.653379 | 4_2:-63641311 | None:intergenic |
| GTACTCCGGCAACAGTTCAG+GGG | 0.653779 | 4_2:+63637508 | Msa0614570:CDS |
| AGTAGTAGCTTCAGTTCTCG+CGG | 0.659393 | 4_2:+63637533 | Msa0614570:CDS |
| GCCGCGGATGTATCAGACGC+CGG | 0.668223 | 4_2:+63637616 | Msa0614570:CDS |
| ATGAGTGCGATGAGGTTCAG+GGG | 0.671572 | 4_2:-63641175 | None:intergenic |
| GCGGAACACGATAGTGACGC+AGG | 0.672330 | 4_2:-63636782 | None:intergenic |
| GGGCTGGCATGAGTGCGATG+AGG | 0.673771 | 4_2:-63641183 | None:intergenic |
| CAGGTGAGGCCAATGTCAGG+AGG | 0.674041 | 4_2:+63637677 | Msa0614570:CDS |
| GCTTCAATGAAATACTAATG+CGG | 0.674718 | 4_2:+63636738 | None:intergenic |
| GGAAGCAGCTCTCGTCGCCG+CGG | 0.681014 | 4_2:+63637600 | Msa0614570:CDS |
| GAACTGTTGCCGGAGTACGG+TGG | 0.688179 | 4_2:-63637503 | None:intergenic |
| ACCGGCGTCTGATACATCCG+CGG | 0.697484 | 4_2:-63637617 | None:intergenic |
| TAGTGACGCAGGTTTAAAGG+CGG | 0.705322 | 4_2:-63636771 | None:intergenic |
| GATGGTGTTGGGATTGACAG+GGG | 0.706471 | 4_2:-63641310 | None:intergenic |
| CCTGGCATTTGGAGTCATAG+CGG | 0.709847 | 4_2:-63637835 | None:intergenic |
| ATCGAGTTGGATGATAACAG+AGG | 0.715067 | 4_2:+63637290 | Msa0614570:CDS |
| CAGTGGTTTCAGGAACAATG+CGG | 0.725745 | 4_2:-63641212 | None:intergenic |
| TGATGGATGATATTCAGGTG+AGG | 0.744981 | 4_2:+63637663 | Msa0614570:CDS |
| ACTCCGGCAACAGTTCAGGG+GGG | 0.773344 | 4_2:+63637510 | Msa0614570:CDS |
| GGTAACGTCGAAGTTCTCGG+CGG | 0.777146 | 4_2:-63637363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTATTAAATTTGATAT+AGG | - | chr4_2:63639436-63639455 | None:intergenic | 10.0% |
| !! | TACAACTTATTAAAATTATT+TGG | + | chr4_2:63640184-63640203 | Msa0614570:intron | 10.0% |
| !!! | TTTATCTTTTGTTATAAAAA+TGG | + | chr4_2:63640213-63640232 | Msa0614570:intron | 10.0% |
| !! | AAATTAAGTAAATAAAAAAG+TGG | + | chr4_2:63640392-63640411 | Msa0614570:intron | 10.0% |
| !! | TTATATGTATTCTCTAATTA+AGG | + | chr4_2:63638031-63638050 | Msa0614570:intron | 15.0% |
| !! | TAAGAAAGAATATATTAAGA+TGG | + | chr4_2:63638886-63638905 | Msa0614570:intron | 15.0% |
| !! | GATGATTGTAATTAAAATTT+GGG | - | chr4_2:63639306-63639325 | None:intergenic | 15.0% |
| !! | TGATGATTGTAATTAAAATT+TGG | - | chr4_2:63639307-63639326 | None:intergenic | 15.0% |
| !! | TGTCTATTTAAATTAGAATT+AGG | - | chr4_2:63639539-63639558 | None:intergenic | 15.0% |
| !!! | TATGATTAAGATAATTTTTG+TGG | + | chr4_2:63640610-63640629 | Msa0614570:intron | 15.0% |
| !! | AATCTCATATTTATAGTTTG+CGG | - | chr4_2:63636804-63636823 | None:intergenic | 20.0% |
| !! | AATTGAAATCAAAATAGAGA+AGG | - | chr4_2:63636986-63637005 | None:intergenic | 20.0% |
| !! | CATTGAATTCATAATAGTTA+TGG | - | chr4_2:63637871-63637890 | None:intergenic | 20.0% |
| !! | AGAATTGTATTCATCTTAAT+TGG | + | chr4_2:63637965-63637984 | Msa0614570:intron | 20.0% |
| !! | TACTTTAATGACAATGAAAA+TGG | - | chr4_2:63638070-63638089 | None:intergenic | 20.0% |
| !! | ATAAATATTCCATTTCCATT+AGG | + | chr4_2:63638176-63638195 | Msa0614570:intron | 20.0% |
| !!! | TTTTAGATTTAGCATTTGTT+TGG | + | chr4_2:63638423-63638442 | Msa0614570:intron | 20.0% |
| !! | ATAGAACAAATCTAAATCAT+TGG | + | chr4_2:63639491-63639510 | Msa0614570:intron | 20.0% |
| !!! | AACGAAAATAGATTGTATTT+TGG | + | chr4_2:63639565-63639584 | Msa0614570:intron | 20.0% |
| !! | ATTTAACCATTTATCCAAAT+AGG | + | chr4_2:63640284-63640303 | Msa0614570:intron | 20.0% |
| !! | AAGTCAATAATATCTTATAC+AGG | - | chr4_2:63640773-63640792 | None:intergenic | 20.0% |
| !!! | TAAGATATTATTGACTTCTA+TGG | + | chr4_2:63640776-63640795 | Msa0614570:intron | 20.0% |
| ! | CTCTTCAATCAATTGAAATT+AGG | + | chr4_2:63637041-63637060 | Msa0614570:intron | 25.0% |
| !! | ATTACGTGATTTTCATTTCT+TGG | - | chr4_2:63637143-63637162 | None:intergenic | 25.0% |
| ! | TGAATTCATAATAGTTATGG+CGG | - | chr4_2:63637868-63637887 | None:intergenic | 25.0% |
| !! | AATTCAATGATTCCTGTTTT+TGG | + | chr4_2:63637882-63637901 | Msa0614570:intron | 25.0% |
| ! | ATGCACTTAATAGTTAATAC+AGG | - | chr4_2:63638101-63638120 | None:intergenic | 25.0% |
| !!! | TAGTAAATTTGCTGAAATCA+CGG | - | chr4_2:63638136-63638155 | None:intergenic | 25.0% |
| !! | TTAGCATTTGTTTGGAATTA+CGG | + | chr4_2:63638431-63638450 | Msa0614570:intron | 25.0% |
| ! | CAAACAAACTGACTATAAAT+TGG | + | chr4_2:63638762-63638781 | Msa0614570:intron | 25.0% |
| !! | TCACAAGTTTCTTGTTTAAT+TGG | + | chr4_2:63638967-63638986 | Msa0614570:intron | 25.0% |
| !! | CACAAGTTTCTTGTTTAATT+GGG | + | chr4_2:63638968-63638987 | Msa0614570:intron | 25.0% |
| !!! | TTGTTTTTGGGAAAGTAATT+TGG | - | chr4_2:63639087-63639106 | None:intergenic | 25.0% |
| ! | AAATTACTTTCCCAAAAACA+AGG | + | chr4_2:63639086-63639105 | Msa0614570:intron | 25.0% |
| !!! | TGTTGTTTCATTATAAACCT+AGG | + | chr4_2:63639110-63639129 | Msa0614570:intron | 25.0% |
| !! | ATTTCATGGAGCAATAATTT+TGG | + | chr4_2:63639187-63639206 | Msa0614570:intron | 25.0% |
| !!! | AGCAATAATTTTGGTATGAT+CGG | + | chr4_2:63639196-63639215 | Msa0614570:intron | 25.0% |
| ! | AGATTCTTAATCAAACTATC+TGG | - | chr4_2:63639908-63639927 | None:intergenic | 25.0% |
| ! | GATAGTTTGATTAAGAATCT+TGG | + | chr4_2:63639908-63639927 | Msa0614570:intron | 25.0% |
| ! | TCTGTAGAATTGTATATTGA+GGG | + | chr4_2:63639990-63640009 | Msa0614570:intron | 25.0% |
| ! | TTAGGTGTTTATTATGCTTA+AGG | - | chr4_2:63640960-63640979 | None:intergenic | 25.0% |
| ! | CATAATAAACACCTAATTAG+CGG | + | chr4_2:63640964-63640983 | Msa0614570:intron | 25.0% |
| AGAAATTACAAGCTCGAAAA+TGG | - | chr4_2:63636942-63636961 | None:intergenic | 30.0% | |
| AGAAGGTTGAAAATTGATAG+AGG | - | chr4_2:63636969-63636988 | None:intergenic | 30.0% | |
| ! | TCGTTATGATTTTCTTTTCC+TGG | + | chr4_2:63637006-63637025 | Msa0614570:intron | 30.0% |
| TCATTCAATTCTCCGATTTA+TGG | + | chr4_2:63637452-63637471 | Msa0614570:CDS | 30.0% | |
| AAGTTCTCAATTGAAGAAAG+CGG | - | chr4_2:63637575-63637594 | None:intergenic | 30.0% | |
| !! | TATTGTGATGGATGATATTC+AGG | + | chr4_2:63637658-63637677 | Msa0614570:CDS | 30.0% |
| GAATTCATAATAGTTATGGC+GGG | - | chr4_2:63637867-63637886 | None:intergenic | 30.0% | |
| GTGATTTCAGCAAATTTACT+AGG | + | chr4_2:63638135-63638154 | Msa0614570:intron | 30.0% | |
| TTTAAACAACTACAGCCTAA+TGG | - | chr4_2:63638194-63638213 | None:intergenic | 30.0% | |
| ATTAGGCTGTAGTTGTTTAA+AGG | + | chr4_2:63638193-63638212 | Msa0614570:intron | 30.0% | |
| TAAAACACAACTTGCAAACA+AGG | + | chr4_2:63638234-63638253 | Msa0614570:intron | 30.0% | |
| AAAACACAACTTGCAAACAA+GGG | + | chr4_2:63638235-63638254 | Msa0614570:intron | 30.0% | |
| ! | ACTATTTAGAGACCTTTTCT+TGG | + | chr4_2:63638278-63638297 | Msa0614570:intron | 30.0% |
| ! | CTATTTAGAGACCTTTTCTT+GGG | + | chr4_2:63638279-63638298 | Msa0614570:intron | 30.0% |
| ! | AAATTGCGTTTAGAAAGCAT+TGG | + | chr4_2:63638509-63638528 | Msa0614570:intron | 30.0% |
| !! | AATTGCGTTTAGAAAGCATT+GGG | + | chr4_2:63638510-63638529 | Msa0614570:intron | 30.0% |
| GATCATATATCGCACTTTAT+AGG | - | chr4_2:63638604-63638623 | None:intergenic | 30.0% | |
| AAATCAGAATAACCCATACA+TGG | - | chr4_2:63639026-63639045 | None:intergenic | 30.0% | |
| !! | TGTATGGGTTATTCTGATTT+TGG | + | chr4_2:63639026-63639045 | Msa0614570:intron | 30.0% |
| !! | GTATGGGTTATTCTGATTTT+GGG | + | chr4_2:63639027-63639046 | Msa0614570:intron | 30.0% |
| ! | TTGGGAAAGTAATTTGGTTT+GGG | - | chr4_2:63639081-63639100 | None:intergenic | 30.0% |
| TTTGGGAAAGTAATTTGGTT+TGG | - | chr4_2:63639082-63639101 | None:intergenic | 30.0% | |
| !!! | GAAACAACAACCTTGTTTTT+GGG | - | chr4_2:63639099-63639118 | None:intergenic | 30.0% |
| !!! | TGAAACAACAACCTTGTTTT+TGG | - | chr4_2:63639100-63639119 | None:intergenic | 30.0% |
| TATTGCTCCATGAAATTAAC+CGG | - | chr4_2:63639183-63639202 | None:intergenic | 30.0% | |
| !! | TTTAGATCTTTTGAGTCCAT+GGG | - | chr4_2:63639369-63639388 | None:intergenic | 30.0% |
| GTATAGAACTATAGATGTCA+AGG | - | chr4_2:63639704-63639723 | None:intergenic | 30.0% | |
| TTAAATTCTGCAATCTCTGT+TGG | + | chr4_2:63639736-63639755 | Msa0614570:intron | 30.0% | |
| !! | GTTGGTTTCTTTTCGTTTTT+TGG | + | chr4_2:63639754-63639773 | Msa0614570:intron | 30.0% |
| CTCTGTAGAATTGTATATTG+AGG | + | chr4_2:63639989-63640008 | Msa0614570:intron | 30.0% | |
| TTGTATATTGAGGGTCTATT+TGG | + | chr4_2:63639999-63640018 | Msa0614570:intron | 30.0% | |
| TGTAGTTATGCAGAATTCTA+TGG | + | chr4_2:63640096-63640115 | Msa0614570:intron | 30.0% | |
| ACTTCTAGCATAAGTTCTTA+TGG | - | chr4_2:63640259-63640278 | None:intergenic | 30.0% | |
| TTAGGTCCTATTTGGATAAA+TGG | - | chr4_2:63640293-63640312 | None:intergenic | 30.0% | |
| TTCAACATTTAGGTCCTATT+TGG | - | chr4_2:63640301-63640320 | None:intergenic | 30.0% | |
| TATCCAGCAATTCAACATTT+AGG | - | chr4_2:63640311-63640330 | None:intergenic | 30.0% | |
| AAAAAGTGGCATAGAATGAT+AGG | + | chr4_2:63640406-63640425 | Msa0614570:intron | 30.0% | |
| AAAAGTGGCATAGAATGATA+GGG | + | chr4_2:63640407-63640426 | Msa0614570:intron | 30.0% | |
| ATGACACTGTAACTAATTGA+TGG | + | chr4_2:63640490-63640509 | Msa0614570:intron | 30.0% | |
| !! | AGTTAGTTGTTTGTTGTGTT+AGG | + | chr4_2:63640548-63640567 | Msa0614570:intron | 30.0% |
| TGTGTTAGGCTTTCTATATA+AGG | + | chr4_2:63640562-63640581 | Msa0614570:intron | 30.0% | |
| GTGTTAGGCTTTCTATATAA+GGG | + | chr4_2:63640563-63640582 | Msa0614570:intron | 30.0% | |
| TTCTATATAAGGGAGTCATA+AGG | + | chr4_2:63640573-63640592 | Msa0614570:intron | 30.0% | |
| ATCTTATCACAGAACATCTA+TGG | + | chr4_2:63640728-63640747 | Msa0614570:intron | 30.0% | |
| GTTTATTATGCTTAAGGACA+AGG | - | chr4_2:63640954-63640973 | None:intergenic | 30.0% | |
| GAAATACTTAACCGCTAATT+AGG | - | chr4_2:63640978-63640997 | None:intergenic | 30.0% | |
| GCATTTCTTCTTTATTGTGT+AGG | + | chr4_2:63641020-63641039 | Msa0614570:intron | 30.0% | |
| !!! | GAAGTTGATGCATACATTTT+TGG | + | chr4_2:63641408-63641427 | Msa0614570:CDS | 30.0% |
| AATGGAGAATGAGAGAAAAG+AGG | - | chr4_2:63636871-63636890 | None:intergenic | 35.0% | |
| ! | GAAGAGAACGAAAATTTTCC+AGG | - | chr4_2:63637027-63637046 | None:intergenic | 35.0% |
| TGAAGAAGGTTTCCAAGTTA+AGG | + | chr4_2:63637237-63637256 | Msa0614570:CDS | 35.0% | |
| TCACTGGATTTAGCAGAAAT+CGG | - | chr4_2:63637431-63637450 | None:intergenic | 35.0% | |
| TACTTACTGGAGCCATAAAT+CGG | - | chr4_2:63637467-63637486 | None:intergenic | 35.0% | |
| ! | TTTTGCTAACCTGTACTTAC+TGG | - | chr4_2:63637480-63637499 | None:intergenic | 35.0% |
| GCTTTCTTCAATTGAGAACT+TGG | + | chr4_2:63637574-63637593 | Msa0614570:CDS | 35.0% | |
| TCATCATCTTCTTCTTCTTC+TGG | + | chr4_2:63637722-63637741 | Msa0614570:CDS | 35.0% | |
| !! | GAAGAGTGTGTTGTTTAAGA+AGG | + | chr4_2:63637778-63637797 | Msa0614570:CDS | 35.0% |
| TTGCATCAAAAGCCAAAAAC+AGG | - | chr4_2:63637897-63637916 | None:intergenic | 35.0% | |
| !!! | AAGTTGTGTTTTAGTCCTTC+GGG | - | chr4_2:63638227-63638246 | None:intergenic | 35.0% |
| !!! | CAAGTTGTGTTTTAGTCCTT+CGG | - | chr4_2:63638228-63638247 | None:intergenic | 35.0% |
| CACAAATACAACCCAAGAAA+AGG | - | chr4_2:63638293-63638312 | None:intergenic | 35.0% | |
| ! | AGTAGTTCATTTTGTCCTGA+TGG | + | chr4_2:63638370-63638389 | Msa0614570:intron | 35.0% |
| ! | GTAGTTCATTTTGTCCTGAT+GGG | + | chr4_2:63638371-63638390 | Msa0614570:intron | 35.0% |
| GGCATAAATAATTTCCCATC+AGG | - | chr4_2:63638388-63638407 | None:intergenic | 35.0% | |
| TATCGCACTTTATAGGTGTT+TGG | - | chr4_2:63638597-63638616 | None:intergenic | 35.0% | |
| ATATCGTAATGCGTGTTCTA+AGG | - | chr4_2:63638672-63638691 | None:intergenic | 35.0% | |
| TGTAAGAGTAAAGTTCTCTC+CGG | - | chr4_2:63638696-63638715 | None:intergenic | 35.0% | |
| AGGTGTGATGATTTACTTCA+CGG | - | chr4_2:63638818-63638837 | None:intergenic | 35.0% | |
| GAAGTAAATCATCACACCTA+CGG | + | chr4_2:63638819-63638838 | Msa0614570:intron | 35.0% | |
| TGGCTCTCTTAAAAATTACG+AGG | + | chr4_2:63638906-63638925 | Msa0614570:intron | 35.0% | |
| !!! | GGTTATTCTGATTTTGGGAT+GGG | + | chr4_2:63639032-63639051 | Msa0614570:intron | 35.0% |
| ATATGATGAAACAACAGCCT+AGG | - | chr4_2:63639130-63639149 | None:intergenic | 35.0% | |
| TCGTTCATAGCATTCATTCT+AGG | - | chr4_2:63639153-63639172 | None:intergenic | 35.0% | |
| ATTGCTCCATGAAATTAACC+GGG | - | chr4_2:63639182-63639201 | None:intergenic | 35.0% | |
| ATTAATATATGGGTACCCCA+TGG | + | chr4_2:63639350-63639369 | Msa0614570:intron | 35.0% | |
| !! | TTAGATCTTTTGAGTCCATG+GGG | - | chr4_2:63639368-63639387 | None:intergenic | 35.0% |
| !! | CTTTAGATCTTTTGAGTCCA+TGG | - | chr4_2:63639370-63639389 | None:intergenic | 35.0% |
| TGAAAACTGTCTCCTTGAAT+TGG | - | chr4_2:63639626-63639645 | None:intergenic | 35.0% | |
| ! | TCTATAGTTCTATACGCAGT+TGG | + | chr4_2:63639709-63639728 | Msa0614570:intron | 35.0% |
| ! | CTATAGTTCTATACGCAGTT+GGG | + | chr4_2:63639710-63639729 | Msa0614570:intron | 35.0% |
| ! | TTGGTTCCTTTTAGTGCATA+AGG | + | chr4_2:63639773-63639792 | Msa0614570:intron | 35.0% |
| GACATTCCTTATGCACTAAA+AGG | - | chr4_2:63639782-63639801 | None:intergenic | 35.0% | |
| TTAACCAGACCATGATACTA+GGG | + | chr4_2:63639869-63639888 | Msa0614570:intron | 35.0% | |
| TAAGCACCTGTAAAACTGTT+TGG | + | chr4_2:63640051-63640070 | Msa0614570:intron | 35.0% | |
| AAGCACCTGTAAAACTGTTT+GGG | + | chr4_2:63640052-63640071 | Msa0614570:intron | 35.0% | |
| TTATTTCCATTTGCGCTCAA+TGG | + | chr4_2:63640142-63640161 | Msa0614570:intron | 35.0% | |
| !! | ACTGCTTGTTGATTTCTGAA+TGG | + | chr4_2:63640330-63640349 | Msa0614570:intron | 35.0% |
| !! | CTGCTTGTTGATTTCTGAAT+GGG | + | chr4_2:63640331-63640350 | Msa0614570:intron | 35.0% |
| !! | TGCTTGTTGATTTCTGAATG+GGG | + | chr4_2:63640332-63640351 | Msa0614570:intron | 35.0% |
| TACATTTGGATGCTAGAGTT+TGG | + | chr4_2:63640362-63640381 | Msa0614570:intron | 35.0% | |
| AAAGTGGCATAGAATGATAG+GGG | + | chr4_2:63640408-63640427 | Msa0614570:intron | 35.0% | |
| CTACTGTATACCTTCCTAAT+AGG | - | chr4_2:63640444-63640463 | None:intergenic | 35.0% | |
| ! | CTATTAGGAAGGTATACAGT+AGG | + | chr4_2:63640442-63640461 | Msa0614570:intron | 35.0% |
| ACATTACAGCTAGTGAGTTA+TGG | + | chr4_2:63640524-63640543 | Msa0614570:intron | 35.0% | |
| GTCATAAGGTTAGTAGTAGA+AGG | + | chr4_2:63640587-63640606 | Msa0614570:intron | 35.0% | |
| ! | AGATAATTTTTGTGGAGTCC+AGG | + | chr4_2:63640618-63640637 | Msa0614570:intron | 35.0% |
| TACCTCAGATTTACTCTTCA+TGG | - | chr4_2:63640908-63640927 | None:intergenic | 35.0% | |
| TTTATTGTGTAGGCACAGAT+GGG | + | chr4_2:63641030-63641049 | Msa0614570:intron | 35.0% | |
| ! | GGTAGTCTTCTTTTAGTAGT+CGG | - | chr4_2:63641447-63641466 | None:intergenic | 35.0% |
| CAACTCTCGCACTTCAAAAA+CGG | + | chr4_2:63636833-63636852 | Msa0614570:five_prime_UTR | 40.0% | |
| GTTAGTGCAGAGAGAGAAAA+TGG | - | chr4_2:63636889-63636908 | None:intergenic | 40.0% | |
| AGCTCGAAAATGGAGATTCA+TGG | - | chr4_2:63636932-63636951 | None:intergenic | 40.0% | |
| ! | CGTTTTTGACATGCAGGAAT+TGG | + | chr4_2:63637193-63637212 | Msa0614570:intron | 40.0% |
| GAACAACAGCAAGATGAAGA+AGG | + | chr4_2:63637223-63637242 | Msa0614570:CDS | 40.0% | |
| TCATCCAACTCGATCATCAA+TGG | - | chr4_2:63637284-63637303 | None:intergenic | 40.0% | |
| !! | ATCGAGTTGGATGATAACAG+AGG | + | chr4_2:63637290-63637309 | Msa0614570:CDS | 40.0% |
| TTTATGGCTCCAGTAAGTAC+AGG | + | chr4_2:63637468-63637487 | Msa0614570:CDS | 40.0% | |
| CTTCAATTGAGAACTTGGAG+AGG | + | chr4_2:63637579-63637598 | Msa0614570:CDS | 40.0% | |
| TGGTGAGGAAGTTATTGTGA+TGG | + | chr4_2:63637646-63637665 | Msa0614570:CDS | 40.0% | |
| ! | TGATGGATGATATTCAGGTG+AGG | + | chr4_2:63637663-63637682 | Msa0614570:CDS | 40.0% |
| TCTTCTTCTTCTTCTGGTAG+AGG | + | chr4_2:63637728-63637747 | Msa0614570:CDS | 40.0% | |
| !! | GAGTGTGTTGTTTAAGAAGG+AGG | + | chr4_2:63637781-63637800 | Msa0614570:CDS | 40.0% |
| CAACTACAGCCTAATGGAAA+TGG | - | chr4_2:63638188-63638207 | None:intergenic | 40.0% | |
| AGGCTGTAGTTGTTTAAAGG+AGG | + | chr4_2:63638196-63638215 | Msa0614570:intron | 40.0% | |
| CTAAAACAATCGCGCATTAG+AGG | - | chr4_2:63638409-63638428 | None:intergenic | 40.0% | |
| ! | GCATTTGTTTGGAATTACGG+CGG | + | chr4_2:63638434-63638453 | Msa0614570:intron | 40.0% |
| ! | CATTTGTTTGGAATTACGGC+GGG | + | chr4_2:63638435-63638454 | Msa0614570:intron | 40.0% |
| ! | TTTCTAGTCAATCGCGCATT+AGG | - | chr4_2:63638468-63638487 | None:intergenic | 40.0% |
| !! | GGATGCTTTACTGACTTGTT+TGG | - | chr4_2:63638564-63638583 | None:intergenic | 40.0% |
| !! | AATGCGTGTTCTAAGGTGTT+TGG | - | chr4_2:63638665-63638684 | None:intergenic | 40.0% |
| GAACACGCATTACGATATAC+CGG | + | chr4_2:63638674-63638693 | Msa0614570:intron | 40.0% | |
| GACTATAAATTGGACCATCC+TGG | + | chr4_2:63638772-63638791 | Msa0614570:intron | 40.0% | |
| AAGATCTCCAGTTCAAATCC+AGG | - | chr4_2:63638793-63638812 | None:intergenic | 40.0% | |
| CTTGTTTAATTGGGCCAGAT+AGG | + | chr4_2:63638977-63638996 | Msa0614570:intron | 40.0% | |
| ! | CTGGTAGTGATTCCATGTAT+GGG | + | chr4_2:63639011-63639030 | Msa0614570:intron | 40.0% |
| !! | GGGTTATTCTGATTTTGGGA+TGG | + | chr4_2:63639031-63639050 | Msa0614570:intron | 40.0% |
| TCAACTGAGATGCCAATATC+AGG | - | chr4_2:63639222-63639241 | None:intergenic | 40.0% | |
| AAACTGTCTCCTTGAATTGG+TGG | - | chr4_2:63639623-63639642 | None:intergenic | 40.0% | |
| ! | AAGGAGACAGTTTTCACACA+AGG | + | chr4_2:63639630-63639649 | Msa0614570:intron | 40.0% |
| ! | AGGAGACAGTTTTCACACAA+GGG | + | chr4_2:63639631-63639650 | Msa0614570:intron | 40.0% |
| ! | ACAGTTTTCACACAAGGGTT+TGG | + | chr4_2:63639636-63639655 | Msa0614570:intron | 40.0% |
| CAGCAATGACAACAAAGACT+CGG | - | chr4_2:63639837-63639856 | None:intergenic | 40.0% | |
| GTTAACCAGACCATGATACT+AGG | + | chr4_2:63639868-63639887 | Msa0614570:intron | 40.0% | |
| ACTTTGGATCCCTAGTATCA+TGG | - | chr4_2:63639881-63639900 | None:intergenic | 40.0% | |
| AAACTACCATTGAGCGCAAA+TGG | - | chr4_2:63640151-63640170 | None:intergenic | 40.0% | |
| GGACCTAAATGTTGAATTGC+TGG | + | chr4_2:63640305-63640324 | Msa0614570:intron | 40.0% | |
| TGATTTCTGAATGGGGAATG+TGG | + | chr4_2:63640339-63640358 | Msa0614570:intron | 40.0% | |
| AATGGGGAATGTGGTACATT+TGG | + | chr4_2:63640348-63640367 | Msa0614570:intron | 40.0% | |
| ACTAGGATCTCCTATTAGGA+AGG | + | chr4_2:63640431-63640450 | Msa0614570:intron | 40.0% | |
| ! | TTAGGAAGGTATACAGTAGG+AGG | + | chr4_2:63640445-63640464 | Msa0614570:intron | 40.0% |
| ! | TAGGAAGGTATACAGTAGGA+GGG | + | chr4_2:63640446-63640465 | Msa0614570:intron | 40.0% |
| ! | ATCCTTTTACAGTTTGCCCA+CGG | + | chr4_2:63640853-63640872 | Msa0614570:intron | 40.0% |
| CTCCATGAAGAGTAAATCTG+AGG | + | chr4_2:63640903-63640922 | Msa0614570:intron | 40.0% | |
| CTTTATTGTGTAGGCACAGA+TGG | + | chr4_2:63641029-63641048 | Msa0614570:intron | 40.0% | |
| ! | CTTGCAAGTCTTGTGACTAA+AGG | - | chr4_2:63641141-63641160 | None:intergenic | 40.0% |
| GAACTCTGTCTGAACCATTT+GGG | - | chr4_2:63641377-63641396 | None:intergenic | 40.0% | |
| AAGAAGACTACCAGTGTTTG+CGG | + | chr4_2:63641455-63641474 | Msa0614570:CDS | 40.0% | |
| TAGTGACGCAGGTTTAAAGG+CGG | - | chr4_2:63636774-63636793 | None:intergenic | 45.0% | |
| CGATAGTGACGCAGGTTTAA+AGG | - | chr4_2:63636777-63636796 | None:intergenic | 45.0% | |
| AACCCTACCACACGATGAAA+CGG | + | chr4_2:63636906-63636925 | Msa0614570:five_prime_UTR | 45.0% | |
| ACGAAGCTCGAATCACGATT+CGG | - | chr4_2:63637176-63637195 | None:intergenic | 45.0% | |
| !! | GAGCTTCGTTTTTGACATGC+AGG | + | chr4_2:63637187-63637206 | Msa0614570:intron | 45.0% |
| CTCGTTCGAAGTCCTTAACT+TGG | - | chr4_2:63637252-63637271 | None:intergenic | 45.0% | |
| ! | TTCGCCATTGATGATCGAGT+TGG | + | chr4_2:63637277-63637296 | Msa0614570:CDS | 45.0% |
| CTGGACTCATCGTTGTTGAT+TGG | - | chr4_2:63637328-63637347 | None:intergenic | 45.0% | |
| CAATCAACAACGATGAGTCC+AGG | + | chr4_2:63637326-63637345 | Msa0614570:CDS | 45.0% | |
| AAGTATTTAGCGAGCTGCGA+CGG | - | chr4_2:63637395-63637414 | None:intergenic | 45.0% | |
| CGGAGAATTGAATGAGTCAC+TGG | - | chr4_2:63637447-63637466 | None:intergenic | 45.0% | |
| AGTAGTAGCTTCAGTTCTCG+CGG | + | chr4_2:63637533-63637552 | Msa0614570:CDS | 45.0% | |
| CTGTTCTTTCCTCCTGACAT+TGG | - | chr4_2:63637689-63637708 | None:intergenic | 45.0% | |
| ACTCTTCGAAGACGAAGAAG+AGG | - | chr4_2:63637765-63637784 | None:intergenic | 45.0% | |
| TTAAAGGAGGATTGTCCCGA+AGG | + | chr4_2:63638209-63638228 | Msa0614570:intron | 45.0% | |
| TGACGTCACGACTCCAATAA+GGG | + | chr4_2:63638319-63638338 | Msa0614570:intron | 45.0% | |
| CCAGACACATACACCCTTAT+TGG | - | chr4_2:63638335-63638354 | None:intergenic | 45.0% | |
| ! | CCAATAAGGGTGTATGTGTC+TGG | + | chr4_2:63638332-63638351 | Msa0614570:intron | 45.0% |
| CGTTGCGACAAAATTTCTCG+CGG | - | chr4_2:63638536-63638555 | None:intergenic | 45.0% | |
| TAGGTGTTTGGACGCAGATA+AGG | - | chr4_2:63638585-63638604 | None:intergenic | 45.0% | |
| GTTACACGCTTATGGACATC+TGG | - | chr4_2:63638720-63638739 | None:intergenic | 45.0% | |
| ATGTCCATAAGCGTGTAACG+TGG | + | chr4_2:63638721-63638740 | Msa0614570:intron | 45.0% | |
| TCATCCACGTTACACGCTTA+TGG | - | chr4_2:63638728-63638747 | None:intergenic | 45.0% | |
| TCTCCAGTTCAAATCCAGGA+TGG | - | chr4_2:63638789-63638808 | None:intergenic | 45.0% | |
| ACACCTACGGTCTATCCAAT+TGG | + | chr4_2:63638832-63638851 | Msa0614570:intron | 45.0% | |
| CACCTACGGTCTATCCAATT+GGG | + | chr4_2:63638833-63638852 | Msa0614570:intron | 45.0% | |
| CAGCAGGCAAATTTCCTATC+TGG | - | chr4_2:63638994-63639013 | None:intergenic | 45.0% | |
| CAGATAGGAAATTTGCCTGC+TGG | + | chr4_2:63638992-63639011 | Msa0614570:intron | 45.0% | |
| TACATGGAATCACTACCAGC+AGG | - | chr4_2:63639010-63639029 | None:intergenic | 45.0% | |
| ! | GCTGGTAGTGATTCCATGTA+TGG | + | chr4_2:63639010-63639029 | Msa0614570:intron | 45.0% |
| CTGCAACCCGGTTAATTTCA+TGG | + | chr4_2:63639173-63639192 | Msa0614570:intron | 45.0% | |
| TGGTATGATCGGCCTGATAT+TGG | + | chr4_2:63639207-63639226 | Msa0614570:intron | 45.0% | |
| TTGGTGGAAGGAAACCTACA+AGG | - | chr4_2:63639607-63639626 | None:intergenic | 45.0% | |
| GGTTTCCTTCCACCAATTCA+AGG | + | chr4_2:63639611-63639630 | Msa0614570:intron | 45.0% | |
| TGTCTCCTTGAATTGGTGGA+AGG | - | chr4_2:63639619-63639638 | None:intergenic | 45.0% | |
| ! | ACAAGGGTTTGGTTATCTGC+AGG | + | chr4_2:63639647-63639666 | Msa0614570:intron | 45.0% |
| ! | CGAGTCTTTGTTGTCATTGC+TGG | + | chr4_2:63639835-63639854 | Msa0614570:intron | 45.0% |
| TGTCATTGCTGGACACGTAA+TGG | + | chr4_2:63639846-63639865 | Msa0614570:intron | 45.0% | |
| GATACTAGGGATCCAAAGTG+TGG | + | chr4_2:63639882-63639901 | Msa0614570:intron | 45.0% | |
| CAAACTATCTGGCCACACTT+TGG | - | chr4_2:63639897-63639916 | None:intergenic | 45.0% | |
| GCTGCAATGTTCTGTCATTC+TGG | + | chr4_2:63639956-63639975 | Msa0614570:intron | 45.0% | |
| ! | GCTCTCCCAAACAGTTTTAC+AGG | - | chr4_2:63640060-63640079 | None:intergenic | 45.0% |
| GCATAGAATGATAGGGGACT+AGG | + | chr4_2:63640414-63640433 | Msa0614570:intron | 45.0% | |
| AGGTATACAGTAGGAGGGAT+AGG | + | chr4_2:63640451-63640470 | Msa0614570:intron | 45.0% | |
| TATACAGTAGGAGGGATAGG+AGG | + | chr4_2:63640454-63640473 | Msa0614570:intron | 45.0% | |
| ATACAGTAGGAGGGATAGGA+GGG | + | chr4_2:63640455-63640474 | Msa0614570:intron | 45.0% | |
| GTAACAGAATGTCAGAGACC+TGG | - | chr4_2:63640639-63640658 | None:intergenic | 45.0% | |
| TTCCGTGGGCAAACTGTAAA+AGG | - | chr4_2:63640858-63640877 | None:intergenic | 45.0% | |
| ATGAAGCTCTTCTCTTCCGT+GGG | - | chr4_2:63640872-63640891 | None:intergenic | 45.0% | |
| CTCTTCATGGAGAGACAACT+TGG | - | chr4_2:63640895-63640914 | None:intergenic | 45.0% | |
| ! | GGCAGATTTTCTATGAGAGC+AGG | + | chr4_2:63641051-63641070 | Msa0614570:CDS | 45.0% |
| TCAGGAACAATGCGACTATC+CGG | - | chr4_2:63641093-63641112 | None:intergenic | 45.0% | |
| TCCAGATTCAGCTACTTCAG+CGG | - | chr4_2:63641118-63641137 | None:intergenic | 45.0% | |
| CAGTGGTTTCAGGAACAATG+CGG | - | chr4_2:63641215-63641234 | None:intergenic | 45.0% | |
| TCAGCTACTTCAGTGGTTTC+AGG | - | chr4_2:63641225-63641244 | None:intergenic | 45.0% | |
| ! | AGCTGATTCAGCTACTTCAG+TGG | - | chr4_2:63641232-63641251 | None:intergenic | 45.0% |
| ACTGAAGTAGCTGAATCAGC+TGG | + | chr4_2:63641231-63641250 | Msa0614570:CDS | 45.0% | |
| ! | CTTGCAAGTCTTGTGACTAC+AGG | - | chr4_2:63641258-63641277 | None:intergenic | 45.0% |
| ! | AGATTGAGGCGAAGTTGGTT+GGG | - | chr4_2:63641283-63641302 | None:intergenic | 45.0% |
| ! | TGATGGTGTTGGGATTGACA+GGG | - | chr4_2:63641314-63641333 | None:intergenic | 45.0% |
| GGAACTCTGTCTGAACCATT+TGG | - | chr4_2:63641378-63641397 | None:intergenic | 45.0% | |
| TTCAGACAGAGTTCCCTCTA+GGG | + | chr4_2:63641383-63641402 | Msa0614570:CDS | 45.0% | |
| !! | AAAAATAAGATATTAATATA+TGG | + | chr4_2:63639339-63639358 | Msa0614570:intron | 5.0% |
| !! | AAAATAAGATATTAATATAT+GGG | + | chr4_2:63639340-63639359 | Msa0614570:intron | 5.0% |
| CGCAGGTTTAAAGGCGGTTT+AGG | - | chr4_2:63636768-63636787 | None:intergenic | 50.0% | |
| TTCATGGCCGTTTCATCGTG+TGG | - | chr4_2:63636916-63636935 | None:intergenic | 50.0% | |
| ATGTATCAGACGCCGGTGAA+GGG | + | chr4_2:63637623-63637642 | Msa0614570:CDS | 50.0% | |
| ATTCAGGTGAGGCCAATGTC+AGG | + | chr4_2:63637674-63637693 | Msa0614570:CDS | 50.0% | |
| AGAAGGAGGTTTGCAGAGCA+TGG | + | chr4_2:63637795-63637814 | Msa0614570:CDS | 50.0% | |
| GAAGGAGGTTTGCAGAGCAT+GGG | + | chr4_2:63637796-63637815 | Msa0614570:CDS | 50.0% | |
| ! | CCTGGCATTTGGAGTCATAG+CGG | - | chr4_2:63637838-63637857 | None:intergenic | 50.0% |
| ! | AGTTATGGCGGGAACAAACC+TGG | - | chr4_2:63637856-63637875 | None:intergenic | 50.0% |
| GTGACGTCACGACTCCAATA+AGG | + | chr4_2:63638318-63638337 | Msa0614570:intron | 50.0% | |
| ! | TAAGGGTGTATGTGTCTGGC+AGG | + | chr4_2:63638336-63638355 | Msa0614570:intron | 50.0% |
| GGACCATCCTGGATTTGAAC+TGG | + | chr4_2:63638783-63638802 | Msa0614570:intron | 50.0% | |
| CTCCCAATTGGATAGACCGT+AGG | - | chr4_2:63638838-63638857 | None:intergenic | 50.0% | |
| GGTCTATCCAATTGGGAGTG+AGG | + | chr4_2:63638840-63638859 | Msa0614570:intron | 50.0% | |
| TGAGGCGAGCAAAAATGCTG+CGG | + | chr4_2:63638858-63638877 | Msa0614570:intron | 50.0% | |
| TGCTATGAACGACTGCAACC+CGG | + | chr4_2:63639161-63639180 | Msa0614570:intron | 50.0% | |
| TTGCAAGCAAGCGTCCTTGT+AGG | + | chr4_2:63639590-63639609 | Msa0614570:intron | 50.0% | |
| GGATCCCTAGTATCATGGTC+TGG | - | chr4_2:63639876-63639895 | None:intergenic | 50.0% | |
| GGGGACTAGGATCTCCTATT+AGG | + | chr4_2:63640427-63640446 | Msa0614570:intron | 50.0% | |
| GATGAAGCTCTTCTCTTCCG+TGG | - | chr4_2:63640873-63640892 | None:intergenic | 50.0% | |
| AGGACTGTGCTTGTATGACC+CGG | + | chr4_2:63641071-63641090 | Msa0614570:CDS | 50.0% | |
| CAGGAACAATGCGACTATCC+GGG | - | chr4_2:63641092-63641111 | None:intergenic | 50.0% | |
| ! | TCAGCTACTTCAGCGGATTC+AGG | - | chr4_2:63641111-63641130 | None:intergenic | 50.0% |
| TCCGCTGAAGTAGCTGAATC+TGG | + | chr4_2:63641114-63641133 | Msa0614570:CDS | 50.0% | |
| ATGAGTGCGATGAGGTTCAG+GGG | - | chr4_2:63641178-63641197 | None:intergenic | 50.0% | |
| CATGAGTGCGATGAGGTTCA+GGG | - | chr4_2:63641179-63641198 | None:intergenic | 50.0% | |
| TCAGGAACAATGCGGCTATC+CGG | - | chr4_2:63641207-63641226 | None:intergenic | 50.0% | |
| ! | GAGATTGAGGCGAAGTTGGT+TGG | - | chr4_2:63641284-63641303 | None:intergenic | 50.0% |
| CGATGAGATTGAGGCGAAGT+TGG | - | chr4_2:63641288-63641307 | None:intergenic | 50.0% | |
| ! | ACAGGGGTACGATGAGATTG+AGG | - | chr4_2:63641297-63641316 | None:intergenic | 50.0% |
| ! | GATGGTGTTGGGATTGACAG+GGG | - | chr4_2:63641313-63641332 | None:intergenic | 50.0% |
| ! | CTGATGGTGTTGGGATTGAC+AGG | - | chr4_2:63641315-63641334 | None:intergenic | 50.0% |
| AGCCTCAATGCCATCATCCA+GGG | - | chr4_2:63641349-63641368 | None:intergenic | 50.0% | |
| ATTGAGGCTGTCCTCCCAAA+TGG | + | chr4_2:63641360-63641379 | Msa0614570:CDS | 50.0% | |
| CTCTGTCTGAACCATTTGGG+AGG | - | chr4_2:63641374-63641393 | None:intergenic | 50.0% | |
| GTTCAGACAGAGTTCCCTCT+AGG | + | chr4_2:63641382-63641401 | Msa0614570:CDS | 50.0% | |
| GCATCAACTTCCTCCCTAGA+GGG | - | chr4_2:63641399-63641418 | None:intergenic | 50.0% | |
| TGCATCAACTTCCTCCCTAG+AGG | - | chr4_2:63641400-63641419 | None:intergenic | 50.0% | |
| GGCCGTTTCATCGTGTGGTA+GGG | - | chr4_2:63636911-63636930 | None:intergenic | 55.0% | |
| TGGCCGTTTCATCGTGTGGT+AGG | - | chr4_2:63636912-63636931 | None:intergenic | 55.0% | |
| GGTAACGTCGAAGTTCTCGG+CGG | - | chr4_2:63637366-63637385 | None:intergenic | 55.0% | |
| GCCGAGAACTTCGACGTTAC+CGG | + | chr4_2:63637365-63637384 | Msa0614570:CDS | 55.0% | |
| GCCGGTAACGTCGAAGTTCT+CGG | - | chr4_2:63637369-63637388 | None:intergenic | 55.0% | |
| GCAAAAACGCCACCGTACTC+CGG | + | chr4_2:63637494-63637513 | Msa0614570:CDS | 55.0% | |
| CCTGAACTGTTGCCGGAGTA+CGG | - | chr4_2:63637509-63637528 | None:intergenic | 55.0% | |
| CGTACTCCGGCAACAGTTCA+GGG | + | chr4_2:63637507-63637526 | Msa0614570:CDS | 55.0% | |
| GTACTCCGGCAACAGTTCAG+GGG | + | chr4_2:63637508-63637527 | Msa0614570:CDS | 55.0% | |
| TACTCCGGCAACAGTTCAGG+GGG | + | chr4_2:63637509-63637528 | Msa0614570:CDS | 55.0% | |
| GATGTATCAGACGCCGGTGA+AGG | + | chr4_2:63637622-63637641 | Msa0614570:CDS | 55.0% | |
| ACTTCCTCACCACCCTTCAC+CGG | - | chr4_2:63637638-63637657 | None:intergenic | 55.0% | |
| TGCAGAGCATGGGAGGAATC+TGG | + | chr4_2:63637806-63637825 | Msa0614570:CDS | 55.0% | |
| CCGCTATGACTCCAAATGCC+AGG | + | chr4_2:63637835-63637854 | Msa0614570:CDS | 55.0% | |
| GCGGGAACAAACCTGGCATT+TGG | - | chr4_2:63637849-63637868 | None:intergenic | 55.0% | |
| TTGCTCGCCTCACTCCCAAT+TGG | - | chr4_2:63638850-63638869 | None:intergenic | 55.0% | |
| ATACCTGACTGCCGCAAGAG+CGG | - | chr4_2:63638940-63638959 | None:intergenic | 55.0% | |
| GCATGAGTGCGATGAGGTTC+AGG | - | chr4_2:63641180-63641199 | None:intergenic | 55.0% | |
| CAGGAACAATGCGGCTATCC+GGG | - | chr4_2:63641206-63641225 | None:intergenic | 55.0% | |
| ATCCCAACACCATCAGCGAC+TGG | + | chr4_2:63641319-63641338 | Msa0614570:CDS | 55.0% | |
| ! | GACCAGTCGCTGATGGTGTT+GGG | - | chr4_2:63641324-63641343 | None:intergenic | 55.0% |
| ! | TGACCAGTCGCTGATGGTGT+TGG | - | chr4_2:63641325-63641344 | None:intergenic | 55.0% |
| ! | ACCCCTGGATGATGGCATTG+AGG | + | chr4_2:63641344-63641363 | Msa0614570:CDS | 55.0% |
| GCCTCAATGCCATCATCCAG+GGG | - | chr4_2:63641348-63641367 | None:intergenic | 55.0% | |
| CAGCCTCAATGCCATCATCC+AGG | - | chr4_2:63641350-63641369 | None:intergenic | 55.0% | |
| ! | AGACAGAGTTCCCTCTAGGG+AGG | + | chr4_2:63641386-63641405 | Msa0614570:CDS | 55.0% |
| !! | TCGCAAAGTGCCGCAAACAC+TGG | - | chr4_2:63641468-63641487 | None:intergenic | 55.0% |
| AGTGTTTGCGGCACTTTGCG+AGG | + | chr4_2:63641467-63641486 | Msa0614570:CDS | 55.0% | |
| GTGTTTGCGGCACTTTGCGA+GGG | + | chr4_2:63641468-63641487 | Msa0614570:CDS | 55.0% | |
| TGTTTGCGGCACTTTGCGAG+GGG | + | chr4_2:63641469-63641488 | Msa0614570:CDS | 55.0% | |
| GCGGAACACGATAGTGACGC+AGG | - | chr4_2:63636785-63636804 | None:intergenic | 60.0% | |
| GCGGCGTAGGGTTGAAAACC+TGG | - | chr4_2:63637347-63637366 | None:intergenic | 60.0% | |
| TCGAAGTTCTCGGCGGCGTA+GGG | - | chr4_2:63637359-63637378 | None:intergenic | 60.0% | |
| GAACTGTTGCCGGAGTACGG+TGG | - | chr4_2:63637506-63637525 | None:intergenic | 60.0% | |
| CCGTACTCCGGCAACAGTTC+AGG | + | chr4_2:63637506-63637525 | Msa0614570:CDS | 60.0% | |
| ACTCCGGCAACAGTTCAGGG+GGG | + | chr4_2:63637510-63637529 | Msa0614570:CDS | 60.0% | |
| ACTCCCCCCTGAACTGTTGC+CGG | - | chr4_2:63637516-63637535 | None:intergenic | 60.0% | |
| ACCGGCGTCTGATACATCCG+CGG | - | chr4_2:63637620-63637639 | None:intergenic | 60.0% | |
| TATCAGACGCCGGTGAAGGG+TGG | + | chr4_2:63637626-63637645 | Msa0614570:CDS | 60.0% | |
| CAGGTGAGGCCAATGTCAGG+AGG | + | chr4_2:63637677-63637696 | Msa0614570:CDS | 60.0% | |
| GGAGGTTTGCAGAGCATGGG+AGG | + | chr4_2:63637799-63637818 | Msa0614570:CDS | 60.0% | |
| AGGTTCCCTCACCGCTCTTG+CGG | + | chr4_2:63638926-63638945 | Msa0614570:intron | 60.0% | |
| AGGTTCAGGGGAAGCTGGCT+GGG | - | chr4_2:63641166-63641185 | None:intergenic | 60.0% | |
| CGATGAGGTTCAGGGGAAGC+TGG | - | chr4_2:63641171-63641190 | None:intergenic | 60.0% | |
| TCATCGCACTCATGCCAGCC+CGG | + | chr4_2:63641185-63641204 | Msa0614570:CDS | 60.0% | |
| AACAATGCGGCTATCCGGGC+TGG | - | chr4_2:63641202-63641221 | None:intergenic | 60.0% | |
| ! | GACTGGTCACCCCTGGATGA+TGG | + | chr4_2:63641336-63641355 | Msa0614570:CDS | 60.0% |
| GTCGAAGTTCTCGGCGGCGT+AGG | - | chr4_2:63637360-63637379 | None:intergenic | 65.0% | |
| GCCGCGGATGTATCAGACGC+CGG | + | chr4_2:63637616-63637635 | Msa0614570:CDS | 65.0% | |
| GACTGCCGCAAGAGCGGTGA+GGG | - | chr4_2:63638934-63638953 | None:intergenic | 65.0% | |
| TGACTGCCGCAAGAGCGGTG+AGG | - | chr4_2:63638935-63638954 | None:intergenic | 65.0% | |
| TCACCGCTCTTGCGGCAGTC+AGG | + | chr4_2:63638934-63638953 | Msa0614570:intron | 65.0% | |
| GAGGTTCAGGGGAAGCTGGC+TGG | - | chr4_2:63641167-63641186 | None:intergenic | 65.0% | |
| ! | GGGCTGGCATGAGTGCGATG+AGG | - | chr4_2:63641186-63641205 | None:intergenic | 65.0% |
| CAGGGGTGACCAGTCGCTGA+TGG | - | chr4_2:63641331-63641350 | None:intergenic | 65.0% | |
| ! | CATCAGCGACTGGTCACCCC+TGG | + | chr4_2:63641329-63641348 | Msa0614570:CDS | 65.0% |
| GGAAGCAGCTCTCGTCGCCG+CGG | + | chr4_2:63637600-63637619 | Msa0614570:CDS | 70.0% | |
| GACGCCGGTGAAGGGTGGTG+AGG | + | chr4_2:63637631-63637650 | Msa0614570:CDS | 70.0% | |
| AGCGAGCTGCGACGGCGAGC+CGG | - | chr4_2:63637387-63637406 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 63636746 | 63641497 | 63636746 | ID=Msa0614570;Name=Msa0614570 |
| chr4_2 | mRNA | 63636746 | 63641497 | 63636746 | ID=Msa0614570-mRNA-1;Parent=Msa0614570;Name=Msa0614570-mRNA-1;_AED=0.35;_eAED=0.35;_QI=219|0.5|0.66|1|0.5|0.33|3|0|363 |
| chr4_2 | exon | 63636746 | 63636952 | 63636746 | ID=Msa0614570-mRNA-1:exon:17789;Parent=Msa0614570-mRNA-1 |
| chr4_2 | exon | 63637209 | 63637856 | 63637209 | ID=Msa0614570-mRNA-1:exon:17790;Parent=Msa0614570-mRNA-1 |
| chr4_2 | exon | 63641042 | 63641497 | 63641042 | ID=Msa0614570-mRNA-1:exon:17791;Parent=Msa0614570-mRNA-1 |
| chr4_2 | five_prime_UTR | 63636746 | 63636952 | 63636746 | ID=Msa0614570-mRNA-1:five_prime_utr;Parent=Msa0614570-mRNA-1 |
| chr4_2 | five_prime_UTR | 63637209 | 63637220 | 63637209 | ID=Msa0614570-mRNA-1:five_prime_utr;Parent=Msa0614570-mRNA-1 |
| chr4_2 | CDS | 63637221 | 63637856 | 63637221 | ID=Msa0614570-mRNA-1:cds;Parent=Msa0614570-mRNA-1 |
| chr4_2 | CDS | 63641042 | 63641497 | 63641042 | ID=Msa0614570-mRNA-1:cds;Parent=Msa0614570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
