AlfalfaGEDB | Msa0639210

M. sativa cultivar zhongmu-4 / Msa0639210

KEGG: K15308|K18753
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639210	XP_013457215.2	86.979	384	26	4	1	362	1	382	0.0	592

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0639210	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0559680	Msa0639210	0.828248	9.990049e-55	-8.615850e-47
Msa0614570	Msa0639210	0.944591	1.470155e-103	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639210	MtrunA17_Chr4g0050631	86.979	384	26	4	1	362	1	382	0.0	592
Msa0639210	MtrunA17_Chr4g0050971	73.626	91	21	2	273	360	9	99	3.66e-39	134
Msa0639210	MtrunA17_Chr4g0050651	71.739	92	22	3	273	360	9	100	9.84e-37	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 129 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATGCGGCTATCCGGGC+TGG	0.449752	4_3:-34886555	None:intergenic
AACCCTACCACACGATGAAA+CGG	0.479706	4_3:+34882265	Msa0639210:five_prime_UTR
AAGAAGACTACCAGTGTTTG+CGG	0.493423	4_3:+34886811	Msa0639210:CDS
AAGTATTTAGCGAGCTGCGA+CGG	0.544538	4_3:-34882751	None:intergenic
AAGTTCTCAATTGAAGAAAG+CGG	0.591154	4_3:-34882931	None:intergenic
AATCTCATATTTATAGTTTG+CGG	0.409250	4_3:-34882157	None:intergenic
AATGGAGAATGAGAGAAAAG+AGG	0.559872	4_3:-34882227	None:intergenic
ACAGGGGTACGATGAGATTG+AGG	0.577431	4_3:-34886650	None:intergenic
ACCCCTGGATGATGGCATTG+AGG	0.599820	4_3:+34886700	Msa0639210:CDS
ACCGGCGTCTGATACATCCG+CGG	0.697484	4_3:-34882976	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATTACAAGCTCGAAAA+TGG	-	chr4_3:34882301-34882320	None:intergenic	30.0%
AGAAGGTTGAAAATTGATAG+AGG	-	chr4_3:34882328-34882347	None:intergenic	30.0%
TCATTCAATTCTCCGATTTA+TGG	+	chr4_3:34882811-34882830	Msa0639210:CDS	30.0%
AAGTTCTCAATTGAAGAAAG+CGG	-	chr4_3:34882934-34882953	None:intergenic	30.0%
GAATTCATAATAGTTATGGC+GGG	-	chr4_3:34883223-34883242	None:intergenic	30.0%
GTGATTTCAGCAAATTTACT+AGG	+	chr4_3:34883491-34883510	Msa0639210:intron	30.0%
TTTAAACAACTACAGCCTAA+TGG	-	chr4_3:34883550-34883569	None:intergenic	30.0%
ATTAGGCTGTAGTTGTTTAA+AGG	+	chr4_3:34883549-34883568	Msa0639210:intron	30.0%
TAAAACACAACTTGCAAACA+AGG	+	chr4_3:34883590-34883609	Msa0639210:intron	30.0%
AAAACACAACTTGCAAACAA+GGG	+	chr4_3:34883591-34883610	Msa0639210:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	34882102	34886853	34882102	ID=Msa0639210;Name=Msa0639210
chr4_3	mRNA	34882102	34886853	34882102	ID=Msa0639210-mRNA-1;Parent=Msa0639210;Name=Msa0639210-mRNA-1;_AED=0.39;_eAED=0.39;_QI=222\|0.5\|0.66\|1\|0.5\|0.33\|3\|0\|362
chr4_3	exon	34882102	34882311	34882102	ID=Msa0639210-mRNA-1:exon:8201;Parent=Msa0639210-mRNA-1
chr4_3	exon	34882568	34883212	34882568	ID=Msa0639210-mRNA-1:exon:8202;Parent=Msa0639210-mRNA-1
chr4_3	exon	34886398	34886853	34886398	ID=Msa0639210-mRNA-1:exon:8203;Parent=Msa0639210-mRNA-1
chr4_3	five_prime_UTR	34882102	34882311	34882102	ID=Msa0639210-mRNA-1:five_prime_utr;Parent=Msa0639210-mRNA-1
chr4_3	five_prime_UTR	34882568	34882579	34882568	ID=Msa0639210-mRNA-1:five_prime_utr;Parent=Msa0639210-mRNA-1
chr4_3	CDS	34882580	34883212	34882580	ID=Msa0639210-mRNA-1:cds;Parent=Msa0639210-mRNA-1
chr4_3	CDS	34886398	34886853	34886398	ID=Msa0639210-mRNA-1:cds;Parent=Msa0639210-mRNA-1

Gene Sequence

>Msa0639210

ATGAACAACAGCAAGATGAAGAAGGTTTCCAAGTTAAGGACTTCGAACGAGAACGTTTCGCCATTGATGATCGAGTTGGATGATAACAGAGGTCTACGTTATCTCCAATCAACAACGATGAGTCCAGGTTTTCAACCCTACGCCGCCGAGAACTTCGACGTTACCGGCTCGCCGTCGCAGCTCGCTAAATACTTGTACGCTGTATCTCCGATTTCTGCTAAATCCAGTGACTCATTCAATTCTCCGATTTATGGCTCCAGTAAGTACAGGTTAGCAAAAACGCCACCGTACTCCGGCAACAGTTCAGGGGGGAGTAGTAGCTTCAGTTCTCGCGGTAGATTGTCTCTCTCGCCGCTTTCTTCAATTGAGAACTTGGAGAGGAAGCAGCTCTCGTCGCCGCGGATGTATCAGACGCCGGTGAAGGGTGGTGAGGAAGTTATTGTGATGGATGATATTCAGGTGAGGCCAATGTCAGGAGGAAAGGACAGAAGATCTTCTTCATCATCTTCTTCTTCTTCTGGTAGAGGCTCTTCATCTTCCTCTTCTTCGTCTTCGAAGAGTGTGTTGTTTAAGAAGGAGGTTTGCAGAGCATGGGAGGAATCTGGAAACTGCCGCTATGACTCCAAATGCCAGGCACAGATGGGCGGATTTTCTATGAGAGCAGGACTGTGCTTGTATGACCCGGATAGTCGCATTGTTCCTGAATCCGCTGAAGTAGCTGAATCTGGACCTTTAGTCACAAGACTTGCAAGATCCCAGCCAGCTTCCCCTGAACCTCATCGCACTCATGCCAGCCCGGATAGCCGCATTGTTCCTGAAACCACTGAAGTAGCTGAATCAGCTGGACCTGTAGTCACAAGACTTGCAAGATCCCAACCAACTTCGCCTCAATCTCATCGTACCCCTGTCAATCCCAACACCATCAGCGACTGGTCACCCCTGGATGATGGCATTGAGGCTGTCCTCCCAAATGGTTCAGACAGAGTTCCCTCTAGGGAGGAAGTTGATGCATACATTTTTGGCATTCTCAATCAGCCGACTACTAAAAGAAGACTACCAGTGTTTGCGGCACTTTGCGAGGGGCAGTAA

Protein sequence

>Msa0639210

MNNSKMKKVSKLRTSNENVSPLMIELDDNRGLRYLQSTTMSPGFQPYAAENFDVTGSPSQLAKYLYAVSPISAKSSDSFNSPIYGSSKYRLAKTPPYSGNSSGGSSSFSSRGRLSLSPLSSIENLERKQLSSPRMYQTPVKGGEEVIVMDDIQVRPMSGGKDRRSSSSSSSSSGRGSSSSSSSSSKSVLFKKEVCRAWEESGNCRYDSKCQAQMGGFSMRAGLCLYDPDSRIVPESAEVAESGPLVTRLARSQPASPEPHRTHASPDSRIVPETTEVAESAGPVVTRLARSQPTSPQSHRTPVNPNTISDWSPLDDGIEAVLPNGSDRVPSREEVDAYIFGILNQPTTKRRLPVFAALCEGQ*