Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639210 | XP_013457215.2 | 86.979 | 384 | 26 | 4 | 1 | 362 | 1 | 382 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0639210 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614570 | Msa0639210 | 0.944591 | 1.470155e-103 | -8.615850e-47 |
| Msa0559680 | Msa0639210 | 0.828248 | 9.990049e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639210 | MtrunA17_Chr4g0050631 | 86.979 | 384 | 26 | 4 | 1 | 362 | 1 | 382 | 0.0 | 592 |
| Msa0639210 | MtrunA17_Chr4g0050971 | 73.626 | 91 | 21 | 2 | 273 | 360 | 9 | 99 | 3.66e-39 | 134 |
| Msa0639210 | MtrunA17_Chr4g0050651 | 71.739 | 92 | 22 | 3 | 273 | 360 | 9 | 100 | 9.84e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 129 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCAATTCTCCGATTTA+TGG | 0.116513 | 4_3:+34882811 | Msa0639210:CDS |
| TCAGCTACTTCAGTGGTTTC+AGG | 0.236813 | 4_3:-34886578 | None:intergenic |
| CGATAGTGACGCAGGTTTAA+AGG | 0.242843 | 4_3:-34882130 | None:intergenic |
| AGAAATTACAAGCTCGAAAA+TGG | 0.249703 | 4_3:-34882298 | None:intergenic |
| TCATCATCTTCTTCTTCTTC+TGG | 0.266781 | 4_3:+34883078 | Msa0639210:CDS |
| GTTAGTGCAGAGAGAGATAA+TGG | 0.276716 | 4_3:-34882245 | None:intergenic |
| TCAGCTACTTCAGCGGATTC+AGG | 0.301044 | 4_3:-34886464 | None:intergenic |
| GCATGAGTGCGATGAGGTTC+AGG | 0.301934 | 4_3:-34886533 | None:intergenic |
| CCGTACTCCGGCAACAGTTC+AGG | 0.302302 | 4_3:+34882865 | Msa0639210:CDS |
| CGCAGGTTTAAAGGCGGTTT+AGG | 0.307176 | 4_3:-34882121 | None:intergenic |
| TATTGTGATGGATGATATTC+AGG | 0.326560 | 4_3:+34883017 | Msa0639210:CDS |
| TCAGGAACAATGCGGCTATC+CGG | 0.378472 | 4_3:-34886560 | None:intergenic |
| GGAACTCTGTCTGAACCATT+TGG | 0.381458 | 4_3:-34886731 | None:intergenic |
| CTGGACTCATCGTTGTTGAT+TGG | 0.383003 | 4_3:-34882684 | None:intergenic |
| CTGTCCTTTCCTCCTGACAT+TGG | 0.385000 | 4_3:-34883045 | None:intergenic |
| GAGGTTCAGGGGAAGCTGGC+TGG | 0.386384 | 4_3:-34886520 | None:intergenic |
| GCGGGAACAAACCTGGCATT+TGG | 0.389416 | 4_3:-34883202 | None:intergenic |
| GCCGAGAACTTCGACGTTAC+CGG | 0.389780 | 4_3:+34882724 | Msa0639210:CDS |
| TGAAGAAGGTTTCCAAGTTA+AGG | 0.391044 | 4_3:+34882596 | Msa0639210:CDS |
| GCTTTCTTCAATTGAGAACT+TGG | 0.392003 | 4_3:+34882933 | Msa0639210:CDS |
| TCAGGAACAATGCGACTATC+CGG | 0.396662 | 4_3:-34886446 | None:intergenic |
| CTTTATTGTGTAGGCACAGA+TGG | 0.404871 | 4_3:+34886385 | Msa0639210:intron |
| AATCTCATATTTATAGTTTG+CGG | 0.409250 | 4_3:-34882157 | None:intergenic |
| TCCGCTGAAGTAGCTGAATC+TGG | 0.412882 | 4_3:+34886470 | Msa0639210:CDS |
| CTGATGGTGTTGGGATTGAC+AGG | 0.416902 | 4_3:-34886668 | None:intergenic |
| TGCAGAGCATGGGAGGAATC+TGG | 0.420303 | 4_3:+34883162 | Msa0639210:CDS |
| CTCGTTCGAAGTCCTTAACT+TGG | 0.422674 | 4_3:-34882608 | None:intergenic |
| GAACTCTGTCTGAACCATTT+GGG | 0.424835 | 4_3:-34886730 | None:intergenic |
| TGGCCGTTTCATCGTGTGGT+AGG | 0.437629 | 4_3:-34882268 | None:intergenic |
| GCCGGTAACGTCGAAGTTCT+CGG | 0.438838 | 4_3:-34882725 | None:intergenic |
| GCGGCGTAGGGTTGAAAACC+TGG | 0.445857 | 4_3:-34882703 | None:intergenic |
| TACTTACTGGAGCCATAAAT+CGG | 0.446103 | 4_3:-34882823 | None:intergenic |
| CAGGAACAATGCGGCTATCC+GGG | 0.448018 | 4_3:-34886559 | None:intergenic |
| AACAATGCGGCTATCCGGGC+TGG | 0.449752 | 4_3:-34886555 | None:intergenic |
| AGATTGAGGCGAAGTTGGTT+GGG | 0.456658 | 4_3:-34886636 | None:intergenic |
| CGATGAGATTGAGGCGAAGT+TGG | 0.457573 | 4_3:-34886641 | None:intergenic |
| AGGTTCAGGGGAAGCTGGCT+GGG | 0.458963 | 4_3:-34886519 | None:intergenic |
| CAGCCTCAATGCCATCATCC+AGG | 0.459441 | 4_3:-34886703 | None:intergenic |
| AGAAGGAGGTTTGCAGAGCA+TGG | 0.460342 | 4_3:+34883151 | Msa0639210:CDS |
| GAGATTGAGGCGAAGTTGGT+TGG | 0.460421 | 4_3:-34886637 | None:intergenic |
| CCTGAACTGTTGCCGGAGTA+CGG | 0.462019 | 4_3:-34882865 | None:intergenic |
| ATTGAGGCTGTCCTCCCAAA+TGG | 0.462042 | 4_3:+34886716 | Msa0639210:CDS |
| GAGTGTGTTGTTTAAGAAGG+AGG | 0.464562 | 4_3:+34883137 | Msa0639210:CDS |
| TGACCAGTCGCTGATGGTGT+TGG | 0.464996 | 4_3:-34886678 | None:intergenic |
| GAAGAGTGTGTTGTTTAAGA+AGG | 0.469448 | 4_3:+34883134 | Msa0639210:CDS |
| AGCGAGCTGCGACGGCGAGC+CGG | 0.471289 | 4_3:-34882743 | None:intergenic |
| AGTGTTTGCGGCACTTTGCG+AGG | 0.476892 | 4_3:+34886823 | Msa0639210:CDS |
| GACCAGTCGCTGATGGTGTT+GGG | 0.478745 | 4_3:-34886677 | None:intergenic |
| AACCCTACCACACGATGAAA+CGG | 0.479706 | 4_3:+34882265 | Msa0639210:five_prime_UTR |
| TCACTGGATTTAGCAGAAAT+CGG | 0.480187 | 4_3:-34882787 | None:intergenic |
| AGCTCGAAAATGGAGATTCA+TGG | 0.482152 | 4_3:-34882288 | None:intergenic |
| CGATGAGGTTCAGGGGAAGC+TGG | 0.482193 | 4_3:-34886524 | None:intergenic |
| GTGTTTGCGGCACTTTGCGA+GGG | 0.482529 | 4_3:+34886824 | Msa0639210:CDS |
| TCGAAGTTCTCGGCGGCGTA+GGG | 0.488149 | 4_3:-34882715 | None:intergenic |
| AAGAAGACTACCAGTGTTTG+CGG | 0.493423 | 4_3:+34886811 | Msa0639210:CDS |
| CGGAGAATTGAATGAGTCAC+TGG | 0.498104 | 4_3:-34882803 | None:intergenic |
| GGCCGTTTCATCGTGTGGTA+GGG | 0.499268 | 4_3:-34882267 | None:intergenic |
| CATGAGTGCGATGAGGTTCA+GGG | 0.509014 | 4_3:-34886532 | None:intergenic |
| GACTGGTCACCCCTGGATGA+TGG | 0.509897 | 4_3:+34886692 | Msa0639210:CDS |
| CGTACTCCGGCAACAGTTCA+GGG | 0.510086 | 4_3:+34882866 | Msa0639210:CDS |
| GATGTATCAGACGCCGGTGA+AGG | 0.511807 | 4_3:+34882981 | Msa0639210:CDS |
| GTCGAAGTTCTCGGCGGCGT+AGG | 0.512563 | 4_3:-34882716 | None:intergenic |
| CTTGCAAGTCTTGTGACTAC+AGG | 0.513276 | 4_3:-34886611 | None:intergenic |
| GAAGGAGGTTTGCAGAGCAT+GGG | 0.513507 | 4_3:+34883152 | Msa0639210:CDS |
| TCATCCAACTCGATCATCAA+TGG | 0.518876 | 4_3:-34882640 | None:intergenic |
| CATCAGCGACTGGTCACCCC+TGG | 0.525662 | 4_3:+34886685 | Msa0639210:CDS |
| CTTGCAAGTCTTGTGACTAA+AGG | 0.531988 | 4_3:-34886494 | None:intergenic |
| ATTCAGGTGAGGCCAATGTC+AGG | 0.532076 | 4_3:+34883033 | Msa0639210:CDS |
| GAGGCCAATGTCAGGAGGAA+AGG | 0.532703 | 4_3:+34883041 | Msa0639210:CDS |
| TTTATTGTGTAGGCACAGAT+GGG | 0.538263 | 4_3:+34886386 | Msa0639210:intron |
| GTTCAGACAGAGTTCCCTCT+AGG | 0.542921 | 4_3:+34886738 | Msa0639210:CDS |
| GGAGGTTTGCAGAGCATGGG+AGG | 0.543989 | 4_3:+34883155 | Msa0639210:CDS |
| TTCATGGCCGTTTCATCGTG+TGG | 0.544236 | 4_3:-34882272 | None:intergenic |
| AAGTATTTAGCGAGCTGCGA+CGG | 0.544538 | 4_3:-34882751 | None:intergenic |
| TTTATGGCTCCAGTAAGTAC+AGG | 0.546704 | 4_3:+34882827 | Msa0639210:CDS |
| TCATCGCACTCATGCCAGCC+CGG | 0.549587 | 4_3:+34886541 | Msa0639210:CDS |
| CCGCTATGACTCCAAATGCC+AGG | 0.551499 | 4_3:+34883191 | Msa0639210:CDS |
| TTCGCCATTGATGATCGAGT+TGG | 0.551669 | 4_3:+34882636 | Msa0639210:CDS |
| AGCTGATTCAGCTACTTCAG+TGG | 0.552361 | 4_3:-34886585 | None:intergenic |
| CAGGGGTGACCAGTCGCTGA+TGG | 0.559234 | 4_3:-34886684 | None:intergenic |
| CAGGAACAATGCGACTATCC+GGG | 0.559706 | 4_3:-34886445 | None:intergenic |
| AATGGAGAATGAGAGAAAAG+AGG | 0.559872 | 4_3:-34882227 | None:intergenic |
| AGCCTCAATGCCATCATCCA+GGG | 0.563569 | 4_3:-34886702 | None:intergenic |
| CAATCAACAACGATGAGTCC+AGG | 0.566783 | 4_3:+34882685 | Msa0639210:CDS |
| GAACAACAGCAAGATGAAGA+AGG | 0.574444 | 4_3:+34882582 | Msa0639210:CDS |
| ACTCTTCGAAGACGAAGAAG+AGG | 0.574667 | 4_3:-34883118 | None:intergenic |
| ACAGGGGTACGATGAGATTG+AGG | 0.577431 | 4_3:-34886650 | None:intergenic |
| ATGTATCAGACGCCGGTGAA+GGG | 0.578599 | 4_3:+34882982 | Msa0639210:CDS |
| TACTCCGGCAACAGTTCAGG+GGG | 0.579941 | 4_3:+34882868 | Msa0639210:CDS |
| TCGCAAAGTGCCGCAAACAC+TGG | 0.580686 | 4_3:-34886821 | None:intergenic |
| CTTCAATTGAGAACTTGGAG+AGG | 0.582756 | 4_3:+34882938 | Msa0639210:CDS |
| TTCAGACAGAGTTCCCTCTA+GGG | 0.586505 | 4_3:+34886739 | Msa0639210:CDS |
| AAGTTCTCAATTGAAGAAAG+CGG | 0.591154 | 4_3:-34882931 | None:intergenic |
| ACTGAAGTAGCTGAATCAGC+TGG | 0.591905 | 4_3:+34886587 | Msa0639210:CDS |
| ATCCCAACACCATCAGCGAC+TGG | 0.592240 | 4_3:+34886675 | Msa0639210:CDS |
| ACCCCTGGATGATGGCATTG+AGG | 0.599820 | 4_3:+34886700 | Msa0639210:CDS |
| ACTTCCTCACCACCCTTCAC+CGG | 0.613181 | 4_3:-34882994 | None:intergenic |
| GCATCAACTTCCTCCCTAGA+GGG | 0.614358 | 4_3:-34886752 | None:intergenic |
| CTCTGTCTGAACCATTTGGG+AGG | 0.615742 | 4_3:-34886727 | None:intergenic |
| GACGCCGGTGAAGGGTGGTG+AGG | 0.621390 | 4_3:+34882990 | Msa0639210:CDS |
| TGCATCAACTTCCTCCCTAG+AGG | 0.621656 | 4_3:-34886753 | None:intergenic |
| TGTTTGCGGCACTTTGCGAG+GGG | 0.624671 | 4_3:+34886825 | Msa0639210:CDS |
| ATTGTGTAGGCACAGATGGG+CGG | 0.625772 | 4_3:+34886389 | Msa0639210:intron |
| AGGACTGTGCTTGTATGACC+CGG | 0.627217 | 4_3:+34886427 | Msa0639210:CDS |
| GCTTCAATGAAATACTAATG+CGG | 0.627819 | 4_3:+34882094 | None:intergenic |
| TATCAGACGCCGGTGAAGGG+TGG | 0.632611 | 4_3:+34882985 | Msa0639210:CDS |
| TGGTGAGGAAGTTATTGTGA+TGG | 0.633081 | 4_3:+34883005 | Msa0639210:CDS |
| TCCAGATTCAGCTACTTCAG+CGG | 0.639551 | 4_3:-34886471 | None:intergenic |
| AGACAGAGTTCCCTCTAGGG+AGG | 0.648644 | 4_3:+34886742 | Msa0639210:CDS |
| GCCTCAATGCCATCATCCAG+GGG | 0.652087 | 4_3:-34886701 | None:intergenic |
| TGATGGTGTTGGGATTGACA+GGG | 0.653379 | 4_3:-34886667 | None:intergenic |
| GTACTCCGGCAACAGTTCAG+GGG | 0.653779 | 4_3:+34882867 | Msa0639210:CDS |
| AGTAGTAGCTTCAGTTCTCG+CGG | 0.659393 | 4_3:+34882892 | Msa0639210:CDS |
| GCCGCGGATGTATCAGACGC+CGG | 0.668223 | 4_3:+34882975 | Msa0639210:CDS |
| ATGAGTGCGATGAGGTTCAG+GGG | 0.671572 | 4_3:-34886531 | None:intergenic |
| GCGGAACACGATAGTGACGC+AGG | 0.672330 | 4_3:-34882138 | None:intergenic |
| GGGCTGGCATGAGTGCGATG+AGG | 0.673771 | 4_3:-34886539 | None:intergenic |
| CAGGTGAGGCCAATGTCAGG+AGG | 0.674041 | 4_3:+34883036 | Msa0639210:CDS |
| GGAAGCAGCTCTCGTCGCCG+CGG | 0.681014 | 4_3:+34882959 | Msa0639210:CDS |
| GAACTGTTGCCGGAGTACGG+TGG | 0.688179 | 4_3:-34882862 | None:intergenic |
| ACCGGCGTCTGATACATCCG+CGG | 0.697484 | 4_3:-34882976 | None:intergenic |
| TAGTGACGCAGGTTTAAAGG+CGG | 0.705322 | 4_3:-34882127 | None:intergenic |
| GATGGTGTTGGGATTGACAG+GGG | 0.706471 | 4_3:-34886666 | None:intergenic |
| CCTGGCATTTGGAGTCATAG+CGG | 0.709847 | 4_3:-34883191 | None:intergenic |
| ATCGAGTTGGATGATAACAG+AGG | 0.715067 | 4_3:+34882649 | Msa0639210:CDS |
| CAGTGGTTTCAGGAACAATG+CGG | 0.725745 | 4_3:-34886568 | None:intergenic |
| TGATGGATGATATTCAGGTG+AGG | 0.744981 | 4_3:+34883022 | Msa0639210:CDS |
| ACTCCGGCAACAGTTCAGGG+GGG | 0.773344 | 4_3:+34882869 | Msa0639210:CDS |
| GGTAACGTCGAAGTTCTCGG+CGG | 0.777146 | 4_3:-34882722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTATTAAATTTGATAT+AGG | - | chr4_3:34884792-34884811 | None:intergenic | 10.0% |
| !! | TACAACTTATTAAAATTATT+TGG | + | chr4_3:34885540-34885559 | Msa0639210:intron | 10.0% |
| !!! | TTTATCTTTTGTTATAAAAA+TGG | + | chr4_3:34885569-34885588 | Msa0639210:intron | 10.0% |
| !! | AAATTAAGTAAATAAAAAAG+TGG | + | chr4_3:34885748-34885767 | Msa0639210:intron | 10.0% |
| !! | TTATATGTATTCTCTAATTA+AGG | + | chr4_3:34883387-34883406 | Msa0639210:intron | 15.0% |
| !! | TAAGAAAGAATATATTAAGA+TGG | + | chr4_3:34884242-34884261 | Msa0639210:intron | 15.0% |
| !! | GATGATTGTAATTAAAATTT+GGG | - | chr4_3:34884662-34884681 | None:intergenic | 15.0% |
| !! | TGATGATTGTAATTAAAATT+TGG | - | chr4_3:34884663-34884682 | None:intergenic | 15.0% |
| !! | TGTCTATTTAAATTAGAATT+AGG | - | chr4_3:34884895-34884914 | None:intergenic | 15.0% |
| !!! | TATGATTAAGATAATTTTTG+TGG | + | chr4_3:34885966-34885985 | Msa0639210:intron | 15.0% |
| !! | AATCTCATATTTATAGTTTG+CGG | - | chr4_3:34882160-34882179 | None:intergenic | 20.0% |
| !! | AATTGAAATCAAAATAGAGA+AGG | - | chr4_3:34882345-34882364 | None:intergenic | 20.0% |
| !! | CATTGAATTCATAATAGTTA+TGG | - | chr4_3:34883227-34883246 | None:intergenic | 20.0% |
| !! | AGAATTGTATTCATCTTAAT+TGG | + | chr4_3:34883321-34883340 | Msa0639210:intron | 20.0% |
| !! | TACTTTAATGACAATGAAAA+TGG | - | chr4_3:34883426-34883445 | None:intergenic | 20.0% |
| !! | ATAAATATTCCATTTCCATT+AGG | + | chr4_3:34883532-34883551 | Msa0639210:intron | 20.0% |
| !!! | TTTTAGATTTAGCATTTGTT+TGG | + | chr4_3:34883779-34883798 | Msa0639210:intron | 20.0% |
| !! | ATAGAACAAATCTAAATCAT+TGG | + | chr4_3:34884847-34884866 | Msa0639210:intron | 20.0% |
| !!! | AACGAAAATAGATTGTATTT+TGG | + | chr4_3:34884921-34884940 | Msa0639210:intron | 20.0% |
| !! | ATTTAACCATTTATCCAAAT+AGG | + | chr4_3:34885640-34885659 | Msa0639210:intron | 20.0% |
| !! | AAGTCAATAATATCTTATAC+AGG | - | chr4_3:34886129-34886148 | None:intergenic | 20.0% |
| !!! | TAAGATATTATTGACTTCTA+TGG | + | chr4_3:34886132-34886151 | Msa0639210:intron | 20.0% |
| ! | CTCTTCAATCAATTGAAATT+AGG | + | chr4_3:34882400-34882419 | Msa0639210:intron | 25.0% |
| !! | ATTACGTGATTTTCATTTCT+TGG | - | chr4_3:34882502-34882521 | None:intergenic | 25.0% |
| ! | TGAATTCATAATAGTTATGG+CGG | - | chr4_3:34883224-34883243 | None:intergenic | 25.0% |
| !! | AATTCAATGATTCCTGTTTT+TGG | + | chr4_3:34883238-34883257 | Msa0639210:intron | 25.0% |
| ! | ATGCACTTAATAGTTAATAC+AGG | - | chr4_3:34883457-34883476 | None:intergenic | 25.0% |
| !!! | TAGTAAATTTGCTGAAATCA+CGG | - | chr4_3:34883492-34883511 | None:intergenic | 25.0% |
| !! | TTAGCATTTGTTTGGAATTA+CGG | + | chr4_3:34883787-34883806 | Msa0639210:intron | 25.0% |
| ! | CAAACAAACTGACTATAAAT+TGG | + | chr4_3:34884118-34884137 | Msa0639210:intron | 25.0% |
| !! | TCACAAGTTTCTTGTTTAAT+TGG | + | chr4_3:34884323-34884342 | Msa0639210:intron | 25.0% |
| !! | CACAAGTTTCTTGTTTAATT+GGG | + | chr4_3:34884324-34884343 | Msa0639210:intron | 25.0% |
| ! | AAATCAGAATAACCTATACA+TGG | - | chr4_3:34884382-34884401 | None:intergenic | 25.0% |
| !! | TGTATAGGTTATTCTGATTT+TGG | + | chr4_3:34884382-34884401 | Msa0639210:intron | 25.0% |
| !! | GTATAGGTTATTCTGATTTT+GGG | + | chr4_3:34884383-34884402 | Msa0639210:intron | 25.0% |
| !!! | TTGTTTTTGGGAAAGTAATT+TGG | - | chr4_3:34884443-34884462 | None:intergenic | 25.0% |
| ! | AAATTACTTTCCCAAAAACA+AGG | + | chr4_3:34884442-34884461 | Msa0639210:intron | 25.0% |
| !!! | TGTTGTTTCATTATAAACCT+AGG | + | chr4_3:34884466-34884485 | Msa0639210:intron | 25.0% |
| !! | ATTTCATGGAGCAATAATTT+TGG | + | chr4_3:34884543-34884562 | Msa0639210:intron | 25.0% |
| !!! | AGCAATAATTTTGGTATGAT+CGG | + | chr4_3:34884552-34884571 | Msa0639210:intron | 25.0% |
| ! | AGATTCTTAATCAAACTATC+TGG | - | chr4_3:34885264-34885283 | None:intergenic | 25.0% |
| ! | GATAGTTTGATTAAGAATCT+TGG | + | chr4_3:34885264-34885283 | Msa0639210:intron | 25.0% |
| ! | TCTGTAGAATTGTATATTGA+GGG | + | chr4_3:34885346-34885365 | Msa0639210:intron | 25.0% |
| ! | ACTTATAGCATAAGTTCTTA+TGG | - | chr4_3:34885615-34885634 | None:intergenic | 25.0% |
| ! | TTAGGTGTTTATTATGCTTA+AGG | - | chr4_3:34886316-34886335 | None:intergenic | 25.0% |
| ! | CATAATAAACACCTAATTAG+CGG | + | chr4_3:34886320-34886339 | Msa0639210:intron | 25.0% |
| AGAAATTACAAGCTCGAAAA+TGG | - | chr4_3:34882301-34882320 | None:intergenic | 30.0% | |
| AGAAGGTTGAAAATTGATAG+AGG | - | chr4_3:34882328-34882347 | None:intergenic | 30.0% | |
| ! | TCGTTATGATTTTCTTTTCC+TGG | + | chr4_3:34882365-34882384 | Msa0639210:intron | 30.0% |
| TCATTCAATTCTCCGATTTA+TGG | + | chr4_3:34882811-34882830 | Msa0639210:CDS | 30.0% | |
| AAGTTCTCAATTGAAGAAAG+CGG | - | chr4_3:34882934-34882953 | None:intergenic | 30.0% | |
| !! | TATTGTGATGGATGATATTC+AGG | + | chr4_3:34883017-34883036 | Msa0639210:CDS | 30.0% |
| GAATTCATAATAGTTATGGC+GGG | - | chr4_3:34883223-34883242 | None:intergenic | 30.0% | |
| GTGATTTCAGCAAATTTACT+AGG | + | chr4_3:34883491-34883510 | Msa0639210:intron | 30.0% | |
| TTTAAACAACTACAGCCTAA+TGG | - | chr4_3:34883550-34883569 | None:intergenic | 30.0% | |
| ATTAGGCTGTAGTTGTTTAA+AGG | + | chr4_3:34883549-34883568 | Msa0639210:intron | 30.0% | |
| !!! | AAGTTGTGTTTTAGTCCTTT+GGG | - | chr4_3:34883583-34883602 | None:intergenic | 30.0% |
| TAAAACACAACTTGCAAACA+AGG | + | chr4_3:34883590-34883609 | Msa0639210:intron | 30.0% | |
| AAAACACAACTTGCAAACAA+GGG | + | chr4_3:34883591-34883610 | Msa0639210:intron | 30.0% | |
| ! | ACTATTTAGAGACCTTTTCT+TGG | + | chr4_3:34883634-34883653 | Msa0639210:intron | 30.0% |
| ! | CTATTTAGAGACCTTTTCTT+GGG | + | chr4_3:34883635-34883654 | Msa0639210:intron | 30.0% |
| ! | AAATTGCGTTTAGAAAGCAT+TGG | + | chr4_3:34883865-34883884 | Msa0639210:intron | 30.0% |
| !! | AATTGCGTTTAGAAAGCATT+GGG | + | chr4_3:34883866-34883885 | Msa0639210:intron | 30.0% |
| GATCATATATCGCACTTTAT+AGG | - | chr4_3:34883960-34883979 | None:intergenic | 30.0% | |
| ! | TTGGGAAAGTAATTTGGTTT+GGG | - | chr4_3:34884437-34884456 | None:intergenic | 30.0% |
| TTTGGGAAAGTAATTTGGTT+TGG | - | chr4_3:34884438-34884457 | None:intergenic | 30.0% | |
| !!! | GAAACAACAACCTTGTTTTT+GGG | - | chr4_3:34884455-34884474 | None:intergenic | 30.0% |
| !!! | TGAAACAACAACCTTGTTTT+TGG | - | chr4_3:34884456-34884475 | None:intergenic | 30.0% |
| TATTGCTCCATGAAATTAAC+CGG | - | chr4_3:34884539-34884558 | None:intergenic | 30.0% | |
| !! | TTTAGATCTTTTGAGTCCAT+GGG | - | chr4_3:34884725-34884744 | None:intergenic | 30.0% |
| GTATAGAACTATAGATGTCA+AGG | - | chr4_3:34885060-34885079 | None:intergenic | 30.0% | |
| TTAAATTCTGCAATCTCTGT+TGG | + | chr4_3:34885092-34885111 | Msa0639210:intron | 30.0% | |
| !! | GTTGGTTTCTTTTCGTTTTT+TGG | + | chr4_3:34885110-34885129 | Msa0639210:intron | 30.0% |
| CTCTGTAGAATTGTATATTG+AGG | + | chr4_3:34885345-34885364 | Msa0639210:intron | 30.0% | |
| TTGTATATTGAGGGTCTATT+TGG | + | chr4_3:34885355-34885374 | Msa0639210:intron | 30.0% | |
| TGTAGTTATGCAGAATTCTA+TGG | + | chr4_3:34885452-34885471 | Msa0639210:intron | 30.0% | |
| TTAGGTCCTATTTGGATAAA+TGG | - | chr4_3:34885649-34885668 | None:intergenic | 30.0% | |
| TTCAACATTTAGGTCCTATT+TGG | - | chr4_3:34885657-34885676 | None:intergenic | 30.0% | |
| TATCCAGCAATTCAACATTT+AGG | - | chr4_3:34885667-34885686 | None:intergenic | 30.0% | |
| AAAAAGTGGCATAGAATGAT+AGG | + | chr4_3:34885762-34885781 | Msa0639210:intron | 30.0% | |
| AAAAGTGGCATAGAATGATA+GGG | + | chr4_3:34885763-34885782 | Msa0639210:intron | 30.0% | |
| ATGACACTGTAACTAATTGA+TGG | + | chr4_3:34885846-34885865 | Msa0639210:intron | 30.0% | |
| !! | AGTTAGTTGTTTGTTGTGTT+AGG | + | chr4_3:34885904-34885923 | Msa0639210:intron | 30.0% |
| TGTGTTAGGCTTTCTATATA+AGG | + | chr4_3:34885918-34885937 | Msa0639210:intron | 30.0% | |
| GTGTTAGGCTTTCTATATAA+GGG | + | chr4_3:34885919-34885938 | Msa0639210:intron | 30.0% | |
| TTCTATATAAGGGAGTCATA+AGG | + | chr4_3:34885929-34885948 | Msa0639210:intron | 30.0% | |
| ATCTTATCACAGAACATCTA+TGG | + | chr4_3:34886084-34886103 | Msa0639210:intron | 30.0% | |
| GTTTATTATGCTTAAGGACA+AGG | - | chr4_3:34886310-34886329 | None:intergenic | 30.0% | |
| GAAATACTTAACCGCTAATT+AGG | - | chr4_3:34886334-34886353 | None:intergenic | 30.0% | |
| GCATTTCTTCTTTATTGTGT+AGG | + | chr4_3:34886376-34886395 | Msa0639210:intron | 30.0% | |
| !!! | GAAGTTGATGCATACATTTT+TGG | + | chr4_3:34886764-34886783 | Msa0639210:CDS | 30.0% |
| CAACTCTCACACTTCAAAAA+CGG | + | chr4_3:34882189-34882208 | Msa0639210:five_prime_UTR | 35.0% | |
| AATGGAGAATGAGAGAAAAG+AGG | - | chr4_3:34882230-34882249 | None:intergenic | 35.0% | |
| ! | GAAGAGAACGAAAATTTTCC+AGG | - | chr4_3:34882386-34882405 | None:intergenic | 35.0% |
| TGAAGAAGGTTTCCAAGTTA+AGG | + | chr4_3:34882596-34882615 | Msa0639210:CDS | 35.0% | |
| TCACTGGATTTAGCAGAAAT+CGG | - | chr4_3:34882790-34882809 | None:intergenic | 35.0% | |
| TACTTACTGGAGCCATAAAT+CGG | - | chr4_3:34882826-34882845 | None:intergenic | 35.0% | |
| ! | TTTTGCTAACCTGTACTTAC+TGG | - | chr4_3:34882839-34882858 | None:intergenic | 35.0% |
| GCTTTCTTCAATTGAGAACT+TGG | + | chr4_3:34882933-34882952 | Msa0639210:CDS | 35.0% | |
| TCATCATCTTCTTCTTCTTC+TGG | + | chr4_3:34883078-34883097 | Msa0639210:CDS | 35.0% | |
| !! | GAAGAGTGTGTTGTTTAAGA+AGG | + | chr4_3:34883134-34883153 | Msa0639210:CDS | 35.0% |
| TTGCATCAAAAGCCAAAAAC+AGG | - | chr4_3:34883253-34883272 | None:intergenic | 35.0% | |
| !!! | CAAGTTGTGTTTTAGTCCTT+TGG | - | chr4_3:34883584-34883603 | None:intergenic | 35.0% |
| CACAAATACAACCCAAGAAA+AGG | - | chr4_3:34883649-34883668 | None:intergenic | 35.0% | |
| ! | AGTAGTTCATTTTGTCCTGA+TGG | + | chr4_3:34883726-34883745 | Msa0639210:intron | 35.0% |
| ! | GTAGTTCATTTTGTCCTGAT+GGG | + | chr4_3:34883727-34883746 | Msa0639210:intron | 35.0% |
| GGCATAAATAATTTCCCATC+AGG | - | chr4_3:34883744-34883763 | None:intergenic | 35.0% | |
| TATCGCACTTTATAGGTGTT+TGG | - | chr4_3:34883953-34883972 | None:intergenic | 35.0% | |
| ATATCGTAATGCGTGTTCTA+AGG | - | chr4_3:34884028-34884047 | None:intergenic | 35.0% | |
| TGTAAGAGTAAAGTTCTCTC+CGG | - | chr4_3:34884052-34884071 | None:intergenic | 35.0% | |
| AGGTGTGATGATTTACTTCA+CGG | - | chr4_3:34884174-34884193 | None:intergenic | 35.0% | |
| GAAGTAAATCATCACACCTA+CGG | + | chr4_3:34884175-34884194 | Msa0639210:intron | 35.0% | |
| TGGCTCTCTTAAAAATTACG+AGG | + | chr4_3:34884262-34884281 | Msa0639210:intron | 35.0% | |
| !! | AGGTTATTCTGATTTTGGGA+TGG | + | chr4_3:34884387-34884406 | Msa0639210:intron | 35.0% |
| !!! | GGTTATTCTGATTTTGGGAT+GGG | + | chr4_3:34884388-34884407 | Msa0639210:intron | 35.0% |
| ATATGATGAAACAACAGCCT+AGG | - | chr4_3:34884486-34884505 | None:intergenic | 35.0% | |
| TCGTTCATAGCATTCATTCT+AGG | - | chr4_3:34884509-34884528 | None:intergenic | 35.0% | |
| ATTGCTCCATGAAATTAACC+GGG | - | chr4_3:34884538-34884557 | None:intergenic | 35.0% | |
| ATTAATATATGGGTACCCCA+TGG | + | chr4_3:34884706-34884725 | Msa0639210:intron | 35.0% | |
| !! | TTAGATCTTTTGAGTCCATG+GGG | - | chr4_3:34884724-34884743 | None:intergenic | 35.0% |
| !! | CTTTAGATCTTTTGAGTCCA+TGG | - | chr4_3:34884726-34884745 | None:intergenic | 35.0% |
| TGAAAACTGTCTCCTTGAAT+TGG | - | chr4_3:34884982-34885001 | None:intergenic | 35.0% | |
| ! | TCTATAGTTCTATACGCAGT+TGG | + | chr4_3:34885065-34885084 | Msa0639210:intron | 35.0% |
| ! | CTATAGTTCTATACGCAGTT+GGG | + | chr4_3:34885066-34885085 | Msa0639210:intron | 35.0% |
| ! | TTGGTTCCTTTTAGTGCATA+AGG | + | chr4_3:34885129-34885148 | Msa0639210:intron | 35.0% |
| GACATTCCTTATGCACTAAA+AGG | - | chr4_3:34885138-34885157 | None:intergenic | 35.0% | |
| TTAACCAGACCATGATACTA+GGG | + | chr4_3:34885225-34885244 | Msa0639210:intron | 35.0% | |
| TAAGCACCTGTAAAACTGTT+TGG | + | chr4_3:34885407-34885426 | Msa0639210:intron | 35.0% | |
| AAGCACCTGTAAAACTGTTT+GGG | + | chr4_3:34885408-34885427 | Msa0639210:intron | 35.0% | |
| TTATTTCCATTTGCGCTCAA+TGG | + | chr4_3:34885498-34885517 | Msa0639210:intron | 35.0% | |
| !! | ACTGCTTGTTGATTTCTGAA+TGG | + | chr4_3:34885686-34885705 | Msa0639210:intron | 35.0% |
| !! | CTGCTTGTTGATTTCTGAAT+GGG | + | chr4_3:34885687-34885706 | Msa0639210:intron | 35.0% |
| !! | TGCTTGTTGATTTCTGAATG+GGG | + | chr4_3:34885688-34885707 | Msa0639210:intron | 35.0% |
| TACATTTGGATGCTAGAGTT+TGG | + | chr4_3:34885718-34885737 | Msa0639210:intron | 35.0% | |
| AAAGTGGCATAGAATGATAG+GGG | + | chr4_3:34885764-34885783 | Msa0639210:intron | 35.0% | |
| CTACTGTATACCTTCCTAAT+AGG | - | chr4_3:34885800-34885819 | None:intergenic | 35.0% | |
| ! | CTATTAGGAAGGTATACAGT+AGG | + | chr4_3:34885798-34885817 | Msa0639210:intron | 35.0% |
| ACATTACAGCTAGTGAGTTA+TGG | + | chr4_3:34885880-34885899 | Msa0639210:intron | 35.0% | |
| GTCATAAGGTTAGTAGTAGA+AGG | + | chr4_3:34885943-34885962 | Msa0639210:intron | 35.0% | |
| ! | AGATAATTTTTGTGGAGTCC+AGG | + | chr4_3:34885974-34885993 | Msa0639210:intron | 35.0% |
| TACCTCAGATTTACTCTTCA+TGG | - | chr4_3:34886264-34886283 | None:intergenic | 35.0% | |
| TTTATTGTGTAGGCACAGAT+GGG | + | chr4_3:34886386-34886405 | Msa0639210:intron | 35.0% | |
| ! | GGTAGTCTTCTTTTAGTAGT+CGG | - | chr4_3:34886803-34886822 | None:intergenic | 35.0% |
| GTTAGTGCAGAGAGAGATAA+TGG | - | chr4_3:34882248-34882267 | None:intergenic | 40.0% | |
| AGCTCGAAAATGGAGATTCA+TGG | - | chr4_3:34882291-34882310 | None:intergenic | 40.0% | |
| ! | CGTTTTTGACATGCAGGAAT+TGG | + | chr4_3:34882552-34882571 | Msa0639210:intron | 40.0% |
| GAACAACAGCAAGATGAAGA+AGG | + | chr4_3:34882582-34882601 | Msa0639210:CDS | 40.0% | |
| TCATCCAACTCGATCATCAA+TGG | - | chr4_3:34882643-34882662 | None:intergenic | 40.0% | |
| !! | ATCGAGTTGGATGATAACAG+AGG | + | chr4_3:34882649-34882668 | Msa0639210:CDS | 40.0% |
| TTTATGGCTCCAGTAAGTAC+AGG | + | chr4_3:34882827-34882846 | Msa0639210:CDS | 40.0% | |
| CTTCAATTGAGAACTTGGAG+AGG | + | chr4_3:34882938-34882957 | Msa0639210:CDS | 40.0% | |
| TGGTGAGGAAGTTATTGTGA+TGG | + | chr4_3:34883005-34883024 | Msa0639210:CDS | 40.0% | |
| ! | TGATGGATGATATTCAGGTG+AGG | + | chr4_3:34883022-34883041 | Msa0639210:CDS | 40.0% |
| TCTTCTTCTTCTTCTGGTAG+AGG | + | chr4_3:34883084-34883103 | Msa0639210:CDS | 40.0% | |
| !! | GAGTGTGTTGTTTAAGAAGG+AGG | + | chr4_3:34883137-34883156 | Msa0639210:CDS | 40.0% |
| CAACTACAGCCTAATGGAAA+TGG | - | chr4_3:34883544-34883563 | None:intergenic | 40.0% | |
| AGGCTGTAGTTGTTTAAAGG+AGG | + | chr4_3:34883552-34883571 | Msa0639210:intron | 40.0% | |
| TTAAAGGAGGATTGTCCCAA+AGG | + | chr4_3:34883565-34883584 | Msa0639210:intron | 40.0% | |
| CTAAAACAATCGCGCATTAG+AGG | - | chr4_3:34883765-34883784 | None:intergenic | 40.0% | |
| ! | GCATTTGTTTGGAATTACGG+CGG | + | chr4_3:34883790-34883809 | Msa0639210:intron | 40.0% |
| ! | CATTTGTTTGGAATTACGGC+GGG | + | chr4_3:34883791-34883810 | Msa0639210:intron | 40.0% |
| ! | TTTCTAGTCAATCGCGCATT+AGG | - | chr4_3:34883824-34883843 | None:intergenic | 40.0% |
| !! | GGATGCTTTACTGACTTGTT+TGG | - | chr4_3:34883920-34883939 | None:intergenic | 40.0% |
| !! | AATGCGTGTTCTAAGGTGTT+TGG | - | chr4_3:34884021-34884040 | None:intergenic | 40.0% |
| GAACACGCATTACGATATAC+CGG | + | chr4_3:34884030-34884049 | Msa0639210:intron | 40.0% | |
| GACTATAAATTGGACCATCC+TGG | + | chr4_3:34884128-34884147 | Msa0639210:intron | 40.0% | |
| AAGATCTCCAGTTCAAATCC+AGG | - | chr4_3:34884149-34884168 | None:intergenic | 40.0% | |
| CTTGTTTAATTGGGCCAGAT+AGG | + | chr4_3:34884333-34884352 | Msa0639210:intron | 40.0% | |
| ! | CTGGTAGTGATTCCATGTAT+AGG | + | chr4_3:34884367-34884386 | Msa0639210:intron | 40.0% |
| TCAACTGAGATGCCAATATC+AGG | - | chr4_3:34884578-34884597 | None:intergenic | 40.0% | |
| AAACTGTCTCCTTGAATTGG+TGG | - | chr4_3:34884979-34884998 | None:intergenic | 40.0% | |
| ! | AAGGAGACAGTTTTCACACA+AGG | + | chr4_3:34884986-34885005 | Msa0639210:intron | 40.0% |
| ! | AGGAGACAGTTTTCACACAA+GGG | + | chr4_3:34884987-34885006 | Msa0639210:intron | 40.0% |
| ! | ACAGTTTTCACACAAGGGTT+TGG | + | chr4_3:34884992-34885011 | Msa0639210:intron | 40.0% |
| CAGCAATGACAACAAAGACT+CGG | - | chr4_3:34885193-34885212 | None:intergenic | 40.0% | |
| GTTAACCAGACCATGATACT+AGG | + | chr4_3:34885224-34885243 | Msa0639210:intron | 40.0% | |
| ACTTTGGATCCCTAGTATCA+TGG | - | chr4_3:34885237-34885256 | None:intergenic | 40.0% | |
| AAACTACCATTGAGCGCAAA+TGG | - | chr4_3:34885507-34885526 | None:intergenic | 40.0% | |
| GGACCTAAATGTTGAATTGC+TGG | + | chr4_3:34885661-34885680 | Msa0639210:intron | 40.0% | |
| TGATTTCTGAATGGGGAATG+TGG | + | chr4_3:34885695-34885714 | Msa0639210:intron | 40.0% | |
| AATGGGGAATGTGGTACATT+TGG | + | chr4_3:34885704-34885723 | Msa0639210:intron | 40.0% | |
| ACTAGGATCTCCTATTAGGA+AGG | + | chr4_3:34885787-34885806 | Msa0639210:intron | 40.0% | |
| ! | TTAGGAAGGTATACAGTAGG+AGG | + | chr4_3:34885801-34885820 | Msa0639210:intron | 40.0% |
| ! | TAGGAAGGTATACAGTAGGA+GGG | + | chr4_3:34885802-34885821 | Msa0639210:intron | 40.0% |
| ! | ATCCTTTTACAGTTTGCCCA+CGG | + | chr4_3:34886209-34886228 | Msa0639210:intron | 40.0% |
| CTCCATGAAGAGTAAATCTG+AGG | + | chr4_3:34886259-34886278 | Msa0639210:intron | 40.0% | |
| CTTTATTGTGTAGGCACAGA+TGG | + | chr4_3:34886385-34886404 | Msa0639210:intron | 40.0% | |
| ! | CTTGCAAGTCTTGTGACTAA+AGG | - | chr4_3:34886497-34886516 | None:intergenic | 40.0% |
| GAACTCTGTCTGAACCATTT+GGG | - | chr4_3:34886733-34886752 | None:intergenic | 40.0% | |
| AAGAAGACTACCAGTGTTTG+CGG | + | chr4_3:34886811-34886830 | Msa0639210:CDS | 40.0% | |
| TAGTGACGCAGGTTTAAAGG+CGG | - | chr4_3:34882130-34882149 | None:intergenic | 45.0% | |
| CGATAGTGACGCAGGTTTAA+AGG | - | chr4_3:34882133-34882152 | None:intergenic | 45.0% | |
| AACCCTACCACACGATGAAA+CGG | + | chr4_3:34882265-34882284 | Msa0639210:five_prime_UTR | 45.0% | |
| ACGAAGCTCGAATCACGATT+CGG | - | chr4_3:34882535-34882554 | None:intergenic | 45.0% | |
| !! | GAGCTTCGTTTTTGACATGC+AGG | + | chr4_3:34882546-34882565 | Msa0639210:intron | 45.0% |
| CTCGTTCGAAGTCCTTAACT+TGG | - | chr4_3:34882611-34882630 | None:intergenic | 45.0% | |
| ! | TTCGCCATTGATGATCGAGT+TGG | + | chr4_3:34882636-34882655 | Msa0639210:CDS | 45.0% |
| CTGGACTCATCGTTGTTGAT+TGG | - | chr4_3:34882687-34882706 | None:intergenic | 45.0% | |
| CAATCAACAACGATGAGTCC+AGG | + | chr4_3:34882685-34882704 | Msa0639210:CDS | 45.0% | |
| AAGTATTTAGCGAGCTGCGA+CGG | - | chr4_3:34882754-34882773 | None:intergenic | 45.0% | |
| CGGAGAATTGAATGAGTCAC+TGG | - | chr4_3:34882806-34882825 | None:intergenic | 45.0% | |
| AGTAGTAGCTTCAGTTCTCG+CGG | + | chr4_3:34882892-34882911 | Msa0639210:CDS | 45.0% | |
| ACTCTTCGAAGACGAAGAAG+AGG | - | chr4_3:34883121-34883140 | None:intergenic | 45.0% | |
| TGACGTCACGACTCCAATAA+GGG | + | chr4_3:34883675-34883694 | Msa0639210:intron | 45.0% | |
| CCAGACACATACACCCTTAT+TGG | - | chr4_3:34883691-34883710 | None:intergenic | 45.0% | |
| ! | CCAATAAGGGTGTATGTGTC+TGG | + | chr4_3:34883688-34883707 | Msa0639210:intron | 45.0% |
| CGTTGCGACAAAATTTCTCG+CGG | - | chr4_3:34883892-34883911 | None:intergenic | 45.0% | |
| TAGGTGTTTGGACGCAGATA+AGG | - | chr4_3:34883941-34883960 | None:intergenic | 45.0% | |
| GTTACACGCTTATGGACATC+TGG | - | chr4_3:34884076-34884095 | None:intergenic | 45.0% | |
| ATGTCCATAAGCGTGTAACG+TGG | + | chr4_3:34884077-34884096 | Msa0639210:intron | 45.0% | |
| TCATCCACGTTACACGCTTA+TGG | - | chr4_3:34884084-34884103 | None:intergenic | 45.0% | |
| TCTCCAGTTCAAATCCAGGA+TGG | - | chr4_3:34884145-34884164 | None:intergenic | 45.0% | |
| ACACCTACGGTCTATCCAAT+TGG | + | chr4_3:34884188-34884207 | Msa0639210:intron | 45.0% | |
| CACCTACGGTCTATCCAATT+GGG | + | chr4_3:34884189-34884208 | Msa0639210:intron | 45.0% | |
| TGAGGTGAGCAAAAATGCTG+CGG | + | chr4_3:34884214-34884233 | Msa0639210:intron | 45.0% | |
| CAGCAGGCAAATTTCCTATC+TGG | - | chr4_3:34884350-34884369 | None:intergenic | 45.0% | |
| CAGATAGGAAATTTGCCTGC+TGG | + | chr4_3:34884348-34884367 | Msa0639210:intron | 45.0% | |
| TACATGGAATCACTACCAGC+AGG | - | chr4_3:34884366-34884385 | None:intergenic | 45.0% | |
| CTGCAACCCGGTTAATTTCA+TGG | + | chr4_3:34884529-34884548 | Msa0639210:intron | 45.0% | |
| TGGTATGATCGGCCTGATAT+TGG | + | chr4_3:34884563-34884582 | Msa0639210:intron | 45.0% | |
| TTGGTGGAAGGAAACCTACA+AGG | - | chr4_3:34884963-34884982 | None:intergenic | 45.0% | |
| GGTTTCCTTCCACCAATTCA+AGG | + | chr4_3:34884967-34884986 | Msa0639210:intron | 45.0% | |
| TGTCTCCTTGAATTGGTGGA+AGG | - | chr4_3:34884975-34884994 | None:intergenic | 45.0% | |
| ! | CGAGTCTTTGTTGTCATTGC+TGG | + | chr4_3:34885191-34885210 | Msa0639210:intron | 45.0% |
| TGTCATTGCTGGACACGTAA+TGG | + | chr4_3:34885202-34885221 | Msa0639210:intron | 45.0% | |
| GATACTAGGGATCCAAAGTG+TGG | + | chr4_3:34885238-34885257 | Msa0639210:intron | 45.0% | |
| CAAACTATCTGGCCACACTT+TGG | - | chr4_3:34885253-34885272 | None:intergenic | 45.0% | |
| GCTGCAATGTTCTGTCATTC+TGG | + | chr4_3:34885312-34885331 | Msa0639210:intron | 45.0% | |
| ! | GCTCTCCCAAACAGTTTTAC+AGG | - | chr4_3:34885416-34885435 | None:intergenic | 45.0% |
| GCATAGAATGATAGGGGACT+AGG | + | chr4_3:34885770-34885789 | Msa0639210:intron | 45.0% | |
| AGGTATACAGTAGGAGGGAT+AGG | + | chr4_3:34885807-34885826 | Msa0639210:intron | 45.0% | |
| TATACAGTAGGAGGGATAGG+AGG | + | chr4_3:34885810-34885829 | Msa0639210:intron | 45.0% | |
| ATACAGTAGGAGGGATAGGA+GGG | + | chr4_3:34885811-34885830 | Msa0639210:intron | 45.0% | |
| GTAACAGAATGTCAGAGACC+TGG | - | chr4_3:34885995-34886014 | None:intergenic | 45.0% | |
| TTCCGTGGGCAAACTGTAAA+AGG | - | chr4_3:34886214-34886233 | None:intergenic | 45.0% | |
| ATGAAGCTCTTCTCTTCCGT+GGG | - | chr4_3:34886228-34886247 | None:intergenic | 45.0% | |
| CTCTTCATGGAGAGACAACT+TGG | - | chr4_3:34886251-34886270 | None:intergenic | 45.0% | |
| TCAGGAACAATGCGACTATC+CGG | - | chr4_3:34886449-34886468 | None:intergenic | 45.0% | |
| TCCAGATTCAGCTACTTCAG+CGG | - | chr4_3:34886474-34886493 | None:intergenic | 45.0% | |
| CAGTGGTTTCAGGAACAATG+CGG | - | chr4_3:34886571-34886590 | None:intergenic | 45.0% | |
| TCAGCTACTTCAGTGGTTTC+AGG | - | chr4_3:34886581-34886600 | None:intergenic | 45.0% | |
| ! | AGCTGATTCAGCTACTTCAG+TGG | - | chr4_3:34886588-34886607 | None:intergenic | 45.0% |
| ACTGAAGTAGCTGAATCAGC+TGG | + | chr4_3:34886587-34886606 | Msa0639210:CDS | 45.0% | |
| ! | CTTGCAAGTCTTGTGACTAC+AGG | - | chr4_3:34886614-34886633 | None:intergenic | 45.0% |
| ! | AGATTGAGGCGAAGTTGGTT+GGG | - | chr4_3:34886639-34886658 | None:intergenic | 45.0% |
| ! | TGATGGTGTTGGGATTGACA+GGG | - | chr4_3:34886670-34886689 | None:intergenic | 45.0% |
| GGAACTCTGTCTGAACCATT+TGG | - | chr4_3:34886734-34886753 | None:intergenic | 45.0% | |
| TTCAGACAGAGTTCCCTCTA+GGG | + | chr4_3:34886739-34886758 | Msa0639210:CDS | 45.0% | |
| !! | AAAAATAAGATATTAATATA+TGG | + | chr4_3:34884695-34884714 | Msa0639210:intron | 5.0% |
| !! | AAAATAAGATATTAATATAT+GGG | + | chr4_3:34884696-34884715 | Msa0639210:intron | 5.0% |
| CGCAGGTTTAAAGGCGGTTT+AGG | - | chr4_3:34882124-34882143 | None:intergenic | 50.0% | |
| TTCATGGCCGTTTCATCGTG+TGG | - | chr4_3:34882275-34882294 | None:intergenic | 50.0% | |
| ATGTATCAGACGCCGGTGAA+GGG | + | chr4_3:34882982-34883001 | Msa0639210:CDS | 50.0% | |
| ATTCAGGTGAGGCCAATGTC+AGG | + | chr4_3:34883033-34883052 | Msa0639210:CDS | 50.0% | |
| CTGTCCTTTCCTCCTGACAT+TGG | - | chr4_3:34883048-34883067 | None:intergenic | 50.0% | |
| AGAAGGAGGTTTGCAGAGCA+TGG | + | chr4_3:34883151-34883170 | Msa0639210:CDS | 50.0% | |
| GAAGGAGGTTTGCAGAGCAT+GGG | + | chr4_3:34883152-34883171 | Msa0639210:CDS | 50.0% | |
| ! | CCTGGCATTTGGAGTCATAG+CGG | - | chr4_3:34883194-34883213 | None:intergenic | 50.0% |
| ! | AGTTATGGCGGGAACAAACC+TGG | - | chr4_3:34883212-34883231 | None:intergenic | 50.0% |
| GTGACGTCACGACTCCAATA+AGG | + | chr4_3:34883674-34883693 | Msa0639210:intron | 50.0% | |
| ! | TAAGGGTGTATGTGTCTGGC+AGG | + | chr4_3:34883692-34883711 | Msa0639210:intron | 50.0% |
| GGACCATCCTGGATTTGAAC+TGG | + | chr4_3:34884139-34884158 | Msa0639210:intron | 50.0% | |
| CTCCCAATTGGATAGACCGT+AGG | - | chr4_3:34884194-34884213 | None:intergenic | 50.0% | |
| GGTCTATCCAATTGGGAGTG+AGG | + | chr4_3:34884196-34884215 | Msa0639210:intron | 50.0% | |
| TTGCTCACCTCACTCCCAAT+TGG | - | chr4_3:34884206-34884225 | None:intergenic | 50.0% | |
| TGCTATGAACGACTGCAACC+CGG | + | chr4_3:34884517-34884536 | Msa0639210:intron | 50.0% | |
| TTGCAAGCAAGCGTCCTTGT+AGG | + | chr4_3:34884946-34884965 | Msa0639210:intron | 50.0% | |
| !! | ACAAGGGTTTGGTTCTCTGC+AGG | + | chr4_3:34885003-34885022 | Msa0639210:intron | 50.0% |
| GGATCCCTAGTATCATGGTC+TGG | - | chr4_3:34885232-34885251 | None:intergenic | 50.0% | |
| GGGGACTAGGATCTCCTATT+AGG | + | chr4_3:34885783-34885802 | Msa0639210:intron | 50.0% | |
| GATGAAGCTCTTCTCTTCCG+TGG | - | chr4_3:34886229-34886248 | None:intergenic | 50.0% | |
| ATTGTGTAGGCACAGATGGG+CGG | + | chr4_3:34886389-34886408 | Msa0639210:intron | 50.0% | |
| !! | GGCGGATTTTCTATGAGAGC+AGG | + | chr4_3:34886407-34886426 | Msa0639210:CDS | 50.0% |
| AGGACTGTGCTTGTATGACC+CGG | + | chr4_3:34886427-34886446 | Msa0639210:CDS | 50.0% | |
| CAGGAACAATGCGACTATCC+GGG | - | chr4_3:34886448-34886467 | None:intergenic | 50.0% | |
| ! | TCAGCTACTTCAGCGGATTC+AGG | - | chr4_3:34886467-34886486 | None:intergenic | 50.0% |
| TCCGCTGAAGTAGCTGAATC+TGG | + | chr4_3:34886470-34886489 | Msa0639210:CDS | 50.0% | |
| ATGAGTGCGATGAGGTTCAG+GGG | - | chr4_3:34886534-34886553 | None:intergenic | 50.0% | |
| CATGAGTGCGATGAGGTTCA+GGG | - | chr4_3:34886535-34886554 | None:intergenic | 50.0% | |
| TCAGGAACAATGCGGCTATC+CGG | - | chr4_3:34886563-34886582 | None:intergenic | 50.0% | |
| ! | GAGATTGAGGCGAAGTTGGT+TGG | - | chr4_3:34886640-34886659 | None:intergenic | 50.0% |
| CGATGAGATTGAGGCGAAGT+TGG | - | chr4_3:34886644-34886663 | None:intergenic | 50.0% | |
| ! | ACAGGGGTACGATGAGATTG+AGG | - | chr4_3:34886653-34886672 | None:intergenic | 50.0% |
| ! | GATGGTGTTGGGATTGACAG+GGG | - | chr4_3:34886669-34886688 | None:intergenic | 50.0% |
| ! | CTGATGGTGTTGGGATTGAC+AGG | - | chr4_3:34886671-34886690 | None:intergenic | 50.0% |
| AGCCTCAATGCCATCATCCA+GGG | - | chr4_3:34886705-34886724 | None:intergenic | 50.0% | |
| ATTGAGGCTGTCCTCCCAAA+TGG | + | chr4_3:34886716-34886735 | Msa0639210:CDS | 50.0% | |
| CTCTGTCTGAACCATTTGGG+AGG | - | chr4_3:34886730-34886749 | None:intergenic | 50.0% | |
| GTTCAGACAGAGTTCCCTCT+AGG | + | chr4_3:34886738-34886757 | Msa0639210:CDS | 50.0% | |
| GCATCAACTTCCTCCCTAGA+GGG | - | chr4_3:34886755-34886774 | None:intergenic | 50.0% | |
| TGCATCAACTTCCTCCCTAG+AGG | - | chr4_3:34886756-34886775 | None:intergenic | 50.0% | |
| GGCCGTTTCATCGTGTGGTA+GGG | - | chr4_3:34882270-34882289 | None:intergenic | 55.0% | |
| TGGCCGTTTCATCGTGTGGT+AGG | - | chr4_3:34882271-34882290 | None:intergenic | 55.0% | |
| GGTAACGTCGAAGTTCTCGG+CGG | - | chr4_3:34882725-34882744 | None:intergenic | 55.0% | |
| GCCGAGAACTTCGACGTTAC+CGG | + | chr4_3:34882724-34882743 | Msa0639210:CDS | 55.0% | |
| GCCGGTAACGTCGAAGTTCT+CGG | - | chr4_3:34882728-34882747 | None:intergenic | 55.0% | |
| GCAAAAACGCCACCGTACTC+CGG | + | chr4_3:34882853-34882872 | Msa0639210:CDS | 55.0% | |
| CCTGAACTGTTGCCGGAGTA+CGG | - | chr4_3:34882868-34882887 | None:intergenic | 55.0% | |
| CGTACTCCGGCAACAGTTCA+GGG | + | chr4_3:34882866-34882885 | Msa0639210:CDS | 55.0% | |
| GTACTCCGGCAACAGTTCAG+GGG | + | chr4_3:34882867-34882886 | Msa0639210:CDS | 55.0% | |
| TACTCCGGCAACAGTTCAGG+GGG | + | chr4_3:34882868-34882887 | Msa0639210:CDS | 55.0% | |
| GATGTATCAGACGCCGGTGA+AGG | + | chr4_3:34882981-34883000 | Msa0639210:CDS | 55.0% | |
| ACTTCCTCACCACCCTTCAC+CGG | - | chr4_3:34882997-34883016 | None:intergenic | 55.0% | |
| GAGGCCAATGTCAGGAGGAA+AGG | + | chr4_3:34883041-34883060 | Msa0639210:CDS | 55.0% | |
| TGCAGAGCATGGGAGGAATC+TGG | + | chr4_3:34883162-34883181 | Msa0639210:CDS | 55.0% | |
| CCGCTATGACTCCAAATGCC+AGG | + | chr4_3:34883191-34883210 | Msa0639210:CDS | 55.0% | |
| GCGGGAACAAACCTGGCATT+TGG | - | chr4_3:34883205-34883224 | None:intergenic | 55.0% | |
| ATACCTGACTGCCGCAAGAG+CGG | - | chr4_3:34884296-34884315 | None:intergenic | 55.0% | |
| GCATGAGTGCGATGAGGTTC+AGG | - | chr4_3:34886536-34886555 | None:intergenic | 55.0% | |
| CAGGAACAATGCGGCTATCC+GGG | - | chr4_3:34886562-34886581 | None:intergenic | 55.0% | |
| ATCCCAACACCATCAGCGAC+TGG | + | chr4_3:34886675-34886694 | Msa0639210:CDS | 55.0% | |
| ! | GACCAGTCGCTGATGGTGTT+GGG | - | chr4_3:34886680-34886699 | None:intergenic | 55.0% |
| ! | TGACCAGTCGCTGATGGTGT+TGG | - | chr4_3:34886681-34886700 | None:intergenic | 55.0% |
| ! | ACCCCTGGATGATGGCATTG+AGG | + | chr4_3:34886700-34886719 | Msa0639210:CDS | 55.0% |
| GCCTCAATGCCATCATCCAG+GGG | - | chr4_3:34886704-34886723 | None:intergenic | 55.0% | |
| CAGCCTCAATGCCATCATCC+AGG | - | chr4_3:34886706-34886725 | None:intergenic | 55.0% | |
| ! | AGACAGAGTTCCCTCTAGGG+AGG | + | chr4_3:34886742-34886761 | Msa0639210:CDS | 55.0% |
| !! | TCGCAAAGTGCCGCAAACAC+TGG | - | chr4_3:34886824-34886843 | None:intergenic | 55.0% |
| AGTGTTTGCGGCACTTTGCG+AGG | + | chr4_3:34886823-34886842 | Msa0639210:CDS | 55.0% | |
| GTGTTTGCGGCACTTTGCGA+GGG | + | chr4_3:34886824-34886843 | Msa0639210:CDS | 55.0% | |
| TGTTTGCGGCACTTTGCGAG+GGG | + | chr4_3:34886825-34886844 | Msa0639210:CDS | 55.0% | |
| GCGGAACACGATAGTGACGC+AGG | - | chr4_3:34882141-34882160 | None:intergenic | 60.0% | |
| GCGGCGTAGGGTTGAAAACC+TGG | - | chr4_3:34882706-34882725 | None:intergenic | 60.0% | |
| TCGAAGTTCTCGGCGGCGTA+GGG | - | chr4_3:34882718-34882737 | None:intergenic | 60.0% | |
| GAACTGTTGCCGGAGTACGG+TGG | - | chr4_3:34882865-34882884 | None:intergenic | 60.0% | |
| CCGTACTCCGGCAACAGTTC+AGG | + | chr4_3:34882865-34882884 | Msa0639210:CDS | 60.0% | |
| ACTCCGGCAACAGTTCAGGG+GGG | + | chr4_3:34882869-34882888 | Msa0639210:CDS | 60.0% | |
| ACTCCCCCCTGAACTGTTGC+CGG | - | chr4_3:34882875-34882894 | None:intergenic | 60.0% | |
| ACCGGCGTCTGATACATCCG+CGG | - | chr4_3:34882979-34882998 | None:intergenic | 60.0% | |
| TATCAGACGCCGGTGAAGGG+TGG | + | chr4_3:34882985-34883004 | Msa0639210:CDS | 60.0% | |
| CAGGTGAGGCCAATGTCAGG+AGG | + | chr4_3:34883036-34883055 | Msa0639210:CDS | 60.0% | |
| GGAGGTTTGCAGAGCATGGG+AGG | + | chr4_3:34883155-34883174 | Msa0639210:CDS | 60.0% | |
| AGGTTCCCTCACCGCTCTTG+CGG | + | chr4_3:34884282-34884301 | Msa0639210:intron | 60.0% | |
| AGGTTCAGGGGAAGCTGGCT+GGG | - | chr4_3:34886522-34886541 | None:intergenic | 60.0% | |
| CGATGAGGTTCAGGGGAAGC+TGG | - | chr4_3:34886527-34886546 | None:intergenic | 60.0% | |
| TCATCGCACTCATGCCAGCC+CGG | + | chr4_3:34886541-34886560 | Msa0639210:CDS | 60.0% | |
| AACAATGCGGCTATCCGGGC+TGG | - | chr4_3:34886558-34886577 | None:intergenic | 60.0% | |
| ! | GACTGGTCACCCCTGGATGA+TGG | + | chr4_3:34886692-34886711 | Msa0639210:CDS | 60.0% |
| GTCGAAGTTCTCGGCGGCGT+AGG | - | chr4_3:34882719-34882738 | None:intergenic | 65.0% | |
| GCCGCGGATGTATCAGACGC+CGG | + | chr4_3:34882975-34882994 | Msa0639210:CDS | 65.0% | |
| GACTGCCGCAAGAGCGGTGA+GGG | - | chr4_3:34884290-34884309 | None:intergenic | 65.0% | |
| TGACTGCCGCAAGAGCGGTG+AGG | - | chr4_3:34884291-34884310 | None:intergenic | 65.0% | |
| TCACCGCTCTTGCGGCAGTC+AGG | + | chr4_3:34884290-34884309 | Msa0639210:intron | 65.0% | |
| GAGGTTCAGGGGAAGCTGGC+TGG | - | chr4_3:34886523-34886542 | None:intergenic | 65.0% | |
| ! | GGGCTGGCATGAGTGCGATG+AGG | - | chr4_3:34886542-34886561 | None:intergenic | 65.0% |
| CAGGGGTGACCAGTCGCTGA+TGG | - | chr4_3:34886687-34886706 | None:intergenic | 65.0% | |
| ! | CATCAGCGACTGGTCACCCC+TGG | + | chr4_3:34886685-34886704 | Msa0639210:CDS | 65.0% |
| GGAAGCAGCTCTCGTCGCCG+CGG | + | chr4_3:34882959-34882978 | Msa0639210:CDS | 70.0% | |
| GACGCCGGTGAAGGGTGGTG+AGG | + | chr4_3:34882990-34883009 | Msa0639210:CDS | 70.0% | |
| AGCGAGCTGCGACGGCGAGC+CGG | - | chr4_3:34882746-34882765 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34882102 | 34886853 | 34882102 | ID=Msa0639210;Name=Msa0639210 |
| chr4_3 | mRNA | 34882102 | 34886853 | 34882102 | ID=Msa0639210-mRNA-1;Parent=Msa0639210;Name=Msa0639210-mRNA-1;_AED=0.39;_eAED=0.39;_QI=222|0.5|0.66|1|0.5|0.33|3|0|362 |
| chr4_3 | exon | 34882102 | 34882311 | 34882102 | ID=Msa0639210-mRNA-1:exon:8201;Parent=Msa0639210-mRNA-1 |
| chr4_3 | exon | 34882568 | 34883212 | 34882568 | ID=Msa0639210-mRNA-1:exon:8202;Parent=Msa0639210-mRNA-1 |
| chr4_3 | exon | 34886398 | 34886853 | 34886398 | ID=Msa0639210-mRNA-1:exon:8203;Parent=Msa0639210-mRNA-1 |
| chr4_3 | five_prime_UTR | 34882102 | 34882311 | 34882102 | ID=Msa0639210-mRNA-1:five_prime_utr;Parent=Msa0639210-mRNA-1 |
| chr4_3 | five_prime_UTR | 34882568 | 34882579 | 34882568 | ID=Msa0639210-mRNA-1:five_prime_utr;Parent=Msa0639210-mRNA-1 |
| chr4_3 | CDS | 34882580 | 34883212 | 34882580 | ID=Msa0639210-mRNA-1:cds;Parent=Msa0639210-mRNA-1 |
| chr4_3 | CDS | 34886398 | 34886853 | 34886398 | ID=Msa0639210-mRNA-1:cds;Parent=Msa0639210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
