AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0614630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614630 MtrunA17_Chr7g0263251 100.000 105 0 0 1 105 1 105 1.24e-71 208
Msa0614630 MtrunA17_Chr4g0050721 100.000 105 0 0 1 105 1 105 1.24e-71 208
Msa0614630 MtrunA17_Chr2g0278691 100.000 105 0 0 1 105 1 105 1.24e-71 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614630 AT3G23390.1 92.381 105 8 0 1 105 1 105 1.05e-66 196
Msa0614630 AT4G14320.1 92.381 105 8 0 1 105 1 105 1.05e-66 196
Msa0614630 AT4G14320.2 91.398 93 8 0 1 93 1 93 3.44e-57 174

Find 44 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTACCCAATACAAAA+AGG 0.271604 4_2:+63718779 Msa0614630:CDS
ATAAAGCAAATAGCATAAAA+AGG 0.341221 4_2:-63719385 None:intergenic
TATTGTTCTAAGATTTCTAA+TGG 0.365770 4_2:+63719313 Msa0614630:three_prime_UTR
TGTTTCACAACACGCAATTA+AGG 0.365888 4_2:+63719054 Msa0614630:CDS
CAAACCCGTCTTTCACAAAA+AGG 0.369511 4_2:+63718872 Msa0614630:CDS
TGAGTTACTATGAAAAGAAC+AGG 0.392892 4_2:-63719557 None:intergenic
AGGTGTGGTTTGAGATCGGC+TGG 0.393259 4_2:-63718568 None:intergenic
TAAAGATTCCATCGCTGCTC+AGG 0.399194 4_2:+63718803 Msa0614630:CDS
CGTTATGACCGCAAACAATC+TGG 0.415551 4_2:+63718834 Msa0614630:CDS
ATTACTAGAAATGAAAGTAT+TGG 0.429872 4_2:-63719515 None:intergenic
AACTAGGGTGCCGCTAAACT+AGG 0.431109 4_2:-63719414 None:intergenic
ATTCATTTCTAGCTAAAACT+AGG 0.450967 4_2:-63719430 None:intergenic
GTATTGGGTAACTTTGTGTA+AGG 0.453756 4_2:-63718772 None:intergenic
CACCATAACCAGATTGTTTG+CGG 0.454458 4_2:-63718842 None:intergenic
GACCGCAAACAATCTGGTTA+TGG 0.454865 4_2:+63718840 Msa0614630:CDS
AGGTGCAAGCACTTTGAGAT+TGG 0.462716 4_2:+63719158 Msa0614630:CDS
TTCATTTCTAGCTAAAACTA+GGG 0.502154 4_2:-63719429 None:intergenic
TCCTGTGATCTTGATTATAG+TGG 0.502662 4_2:+63719490 Msa0614630:three_prime_UTR
CCGATCTCAAACCACACCTC+TGG 0.506565 4_2:+63718572 Msa0614630:five_prime_UTR
TGAGATTGGTGGTGACAAGA+AGG 0.508837 4_2:+63719172 Msa0614630:CDS
ACTAGGGTGCCGCTAAACTA+GGG 0.520715 4_2:-63719413 None:intergenic
AAACCACACCTCTGGAACAA+TGG 0.521072 4_2:+63718580 Msa0614630:exon
CATAGTAACTCAAGTTGTTG+AGG 0.522836 4_2:+63719568 Msa0614630:three_prime_UTR
CCAGAGGTGTGGTTTGAGAT+CGG 0.530019 4_2:-63718572 None:intergenic
TTACCATTGTTCCAGAGGTG+TGG 0.530390 4_2:-63718583 None:intergenic
CGCAAACAATCTGGTTATGG+TGG 0.541862 4_2:+63718843 Msa0614630:CDS
GGTGGTGACAAGAAGGGAAA+AGG 0.543946 4_2:+63719179 Msa0614630:CDS
TGCAAGCACTTTGAGATTGG+TGG 0.545430 4_2:+63719161 Msa0614630:CDS
AGTTGAGGAGGAAGCAGAGT+CGG 0.545736 4_2:-63718535 None:intergenic
TTATTAGAAATGGTGTTACT+CGG 0.550659 4_2:+63719464 Msa0614630:three_prime_UTR
GAGATTGGTGGTGACAAGAA+GGG 0.555011 4_2:+63719173 Msa0614630:CDS
TTATTGGAACCCTAGTTTAG+CGG 0.557688 4_2:+63719404 Msa0614630:three_prime_UTR
TCCACTATAATCAAGATCAC+AGG 0.576285 4_2:-63719491 None:intergenic
GTAGTTTACCATTGTTCCAG+AGG 0.595371 4_2:-63718588 None:intergenic
CTACTAAGAAAATTGTGTTG+AGG 0.599248 4_2:+63719008 Msa0614630:CDS
AAAGATTCCATCGCTGCTCA+GGG 0.607025 4_2:+63718804 Msa0614630:CDS
GAAAACCTACTGCAAAAGCA+AGG 0.613372 4_2:+63718734 Msa0614630:CDS
GTGTTGAGGCTTCAGTGTCA+AGG 0.618711 4_2:+63719022 Msa0614630:CDS
GGGCAAACGAAGAGTTGAGG+AGG 0.651172 4_2:-63718547 None:intergenic
ACTCAAGTTGTTGAGGACTG+AGG 0.661090 4_2:+63719575 Msa0614630:three_prime_UTR
GCTGGGCAAACGAAGAGTTG+AGG 0.677888 4_2:-63718550 None:intergenic
GGTGTGGTTTGAGATCGGCT+GGG 0.686032 4_2:-63718567 None:intergenic
AGTTGTTGAGGACTGAGGAG+TGG 0.713794 4_2:+63719580 Msa0614630:three_prime_UTR
GAGTTACTATGAAAAGAACA+GGG 0.763579 4_2:-63719556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTAATTTTATTAGAAA+TGG + chr4_2:63719454-63719473 Msa0614630:three_prime_UTR 10.0%
!!! AACATTAATTTTATTAGAAA+TGG + chr4_2:63719454-63719473 Msa0614630:three_prime_UTR 10.0%
!!! ATAAATGAAATTGTTGATAA+TGG - chr4_2:63718650-63718669 None:intergenic 15.0%
!!! AATTCAATTTTTGTTGTTAT+AGG + chr4_2:63718692-63718711 Msa0614630:intron 15.0%
!! TAAGATGTTAATTAAGTTAT+TGG + chr4_2:63718952-63718971 Msa0614630:intron 15.0%
!! AAATTTAAAAATCGAAAGAT+GGG - chr4_2:63719269-63719288 None:intergenic 15.0%
!! AAAATTTAAAAATCGAAAGA+TGG - chr4_2:63719270-63719289 None:intergenic 15.0%
!!! ATTTCTAGTAATGAAAAAAA+TGG + chr4_2:63719526-63719545 Msa0614630:three_prime_UTR 15.0%
!!! ATAAATGAAATTGTTGATAA+TGG - chr4_2:63718650-63718669 None:intergenic 15.0%
!!! AATTCAATTTTTGTTGTTAT+AGG + chr4_2:63718692-63718711 Msa0614630:intron 15.0%
!! TAAGATGTTAATTAAGTTAT+TGG + chr4_2:63718952-63718971 Msa0614630:intron 15.0%
!! AAATTTAAAAATCGAAAGAT+GGG - chr4_2:63719269-63719288 None:intergenic 15.0%
!! AAAATTTAAAAATCGAAAGA+TGG - chr4_2:63719270-63719289 None:intergenic 15.0%
!!! ATTTCTAGTAATGAAAAAAA+TGG + chr4_2:63719526-63719545 Msa0614630:three_prime_UTR 15.0%
!! ATCAAATTAAGAAAAACAGA+AGG - chr4_2:63718925-63718944 None:intergenic 20.0%
!!! TATTGTTCTAAGATTTCTAA+TGG + chr4_2:63719313-63719332 Msa0614630:three_prime_UTR 20.0%
!! TAAAAAGGTAAGAAAATGAT+GGG - chr4_2:63719373-63719392 None:intergenic 20.0%
!! ATAAAAAGGTAAGAAAATGA+TGG - chr4_2:63719374-63719393 None:intergenic 20.0%
!! ATAAAGCAAATAGCATAAAA+AGG - chr4_2:63719388-63719407 None:intergenic 20.0%
!!! TTTTATGCTATTTGCTTTAT+TGG + chr4_2:63719388-63719407 Msa0614630:three_prime_UTR 20.0%
!!! ATTACTAGAAATGAAAGTAT+TGG - chr4_2:63719518-63719537 None:intergenic 20.0%
!! ATCAAATTAAGAAAAACAGA+AGG - chr4_2:63718925-63718944 None:intergenic 20.0%
!!! TATTGTTCTAAGATTTCTAA+TGG + chr4_2:63719313-63719332 Msa0614630:three_prime_UTR 20.0%
!! TAAAAAGGTAAGAAAATGAT+GGG - chr4_2:63719373-63719392 None:intergenic 20.0%
!! ATAAAAAGGTAAGAAAATGA+TGG - chr4_2:63719374-63719393 None:intergenic 20.0%
!! ATAAAGCAAATAGCATAAAA+AGG - chr4_2:63719388-63719407 None:intergenic 20.0%
!!! TTTTATGCTATTTGCTTTAT+TGG + chr4_2:63719388-63719407 Msa0614630:three_prime_UTR 20.0%
!!! ATTACTAGAAATGAAAGTAT+TGG - chr4_2:63719518-63719537 None:intergenic 20.0%
! AAAGTTACCCAATACAAAAA+GGG + chr4_2:63718780-63718799 Msa0614630:CDS 25.0%
!! ATCTTTACCCTTTTTGTATT+GGG - chr4_2:63718790-63718809 None:intergenic 25.0%
!! AATCTTTACCCTTTTTGTAT+TGG - chr4_2:63718791-63718810 None:intergenic 25.0%
! TATTGTTGTGTGTTTGAATT+AGG + chr4_2:63718979-63718998 Msa0614630:intron 25.0%
!!! TGTGTAATTTGTTCTGATTT+TGG + chr4_2:63719096-63719115 Msa0614630:intron 25.0%
!!! GTGTAATTTGTTCTGATTTT+GGG + chr4_2:63719097-63719116 Msa0614630:intron 25.0%
!!! TTCATTTCTAGCTAAAACTA+GGG - chr4_2:63719432-63719451 None:intergenic 25.0%
!!! ATTCATTTCTAGCTAAAACT+AGG - chr4_2:63719433-63719452 None:intergenic 25.0%
!!! TTATTAGAAATGGTGTTACT+CGG + chr4_2:63719464-63719483 Msa0614630:three_prime_UTR 25.0%
! AAAGTTACCCAATACAAAAA+GGG + chr4_2:63718780-63718799 Msa0614630:CDS 25.0%
!! ATCTTTACCCTTTTTGTATT+GGG - chr4_2:63718790-63718809 None:intergenic 25.0%
!! AATCTTTACCCTTTTTGTAT+TGG - chr4_2:63718791-63718810 None:intergenic 25.0%
! TATTGTTGTGTGTTTGAATT+AGG + chr4_2:63718979-63718998 Msa0614630:intron 25.0%
!!! TGTGTAATTTGTTCTGATTT+TGG + chr4_2:63719096-63719115 Msa0614630:intron 25.0%
!!! GTGTAATTTGTTCTGATTTT+GGG + chr4_2:63719097-63719116 Msa0614630:intron 25.0%
!!! TTCATTTCTAGCTAAAACTA+GGG - chr4_2:63719432-63719451 None:intergenic 25.0%
!!! ATTCATTTCTAGCTAAAACT+AGG - chr4_2:63719433-63719452 None:intergenic 25.0%
!!! TTATTAGAAATGGTGTTACT+CGG + chr4_2:63719464-63719483 Msa0614630:three_prime_UTR 25.0%
CAAAGTTACCCAATACAAAA+AGG + chr4_2:63718779-63718798 Msa0614630:CDS 30.0%
! TTGTACCTTTTTGTGAAAGA+CGG - chr4_2:63718880-63718899 None:intergenic 30.0%
AAACAGAAGGTAAAGACTTA+AGG - chr4_2:63718912-63718931 None:intergenic 30.0%
CTACTAAGAAAATTGTGTTG+AGG + chr4_2:63719008-63719027 Msa0614630:CDS 30.0%
! AAAAGGAACATCTCTGTTTT+AGG + chr4_2:63719196-63719215 Msa0614630:CDS 30.0%
GAGTTACTATGAAAAGAACA+GGG - chr4_2:63719559-63719578 None:intergenic 30.0%
TGAGTTACTATGAAAAGAAC+AGG - chr4_2:63719560-63719579 None:intergenic 30.0%
CAAAGTTACCCAATACAAAA+AGG + chr4_2:63718779-63718798 Msa0614630:CDS 30.0%
! TTGTACCTTTTTGTGAAAGA+CGG - chr4_2:63718880-63718899 None:intergenic 30.0%
AAACAGAAGGTAAAGACTTA+AGG - chr4_2:63718912-63718931 None:intergenic 30.0%
CTACTAAGAAAATTGTGTTG+AGG + chr4_2:63719008-63719027 Msa0614630:CDS 30.0%
! AAAAGGAACATCTCTGTTTT+AGG + chr4_2:63719196-63719215 Msa0614630:CDS 30.0%
GAGTTACTATGAAAAGAACA+GGG - chr4_2:63719559-63719578 None:intergenic 30.0%
TGAGTTACTATGAAAAGAAC+AGG - chr4_2:63719560-63719579 None:intergenic 30.0%
!! GATAATGGATGAAAGTGTTG+TGG - chr4_2:63718635-63718654 None:intergenic 35.0%
! CAGTAGGTTTTCTTTGTCTT+TGG - chr4_2:63718726-63718745 None:intergenic 35.0%
GTATTGGGTAACTTTGTGTA+AGG - chr4_2:63718775-63718794 None:intergenic 35.0%
! TGTACCTTTTTGTGAAAGAC+GGG - chr4_2:63718879-63718898 None:intergenic 35.0%
TGTTTCACAACACGCAATTA+AGG + chr4_2:63719054-63719073 Msa0614630:CDS 35.0%
!! GTTTTTGTTTGTGTTTGCAG+AGG + chr4_2:63719138-63719157 Msa0614630:intron 35.0%
TTATTGGAACCCTAGTTTAG+CGG + chr4_2:63719404-63719423 Msa0614630:three_prime_UTR 35.0%
TCCTGTGATCTTGATTATAG+TGG + chr4_2:63719490-63719509 Msa0614630:three_prime_UTR 35.0%
TCCACTATAATCAAGATCAC+AGG - chr4_2:63719494-63719513 None:intergenic 35.0%
! CATAGTAACTCAAGTTGTTG+AGG + chr4_2:63719568-63719587 Msa0614630:three_prime_UTR 35.0%
!! GATAATGGATGAAAGTGTTG+TGG - chr4_2:63718635-63718654 None:intergenic 35.0%
! CAGTAGGTTTTCTTTGTCTT+TGG - chr4_2:63718726-63718745 None:intergenic 35.0%
GTATTGGGTAACTTTGTGTA+AGG - chr4_2:63718775-63718794 None:intergenic 35.0%
! TGTACCTTTTTGTGAAAGAC+GGG - chr4_2:63718879-63718898 None:intergenic 35.0%
TGTTTCACAACACGCAATTA+AGG + chr4_2:63719054-63719073 Msa0614630:CDS 35.0%
!! GTTTTTGTTTGTGTTTGCAG+AGG + chr4_2:63719138-63719157 Msa0614630:intron 35.0%
TTATTGGAACCCTAGTTTAG+CGG + chr4_2:63719404-63719423 Msa0614630:three_prime_UTR 35.0%
TCCTGTGATCTTGATTATAG+TGG + chr4_2:63719490-63719509 Msa0614630:three_prime_UTR 35.0%
TCCACTATAATCAAGATCAC+AGG - chr4_2:63719494-63719513 None:intergenic 35.0%
! CATAGTAACTCAAGTTGTTG+AGG + chr4_2:63719568-63719587 Msa0614630:three_prime_UTR 35.0%
GTAGTTTACCATTGTTCCAG+AGG - chr4_2:63718591-63718610 None:intergenic 40.0%
TGTTGTGGAAGGTTAGATGA+GGG - chr4_2:63718620-63718639 None:intergenic 40.0%
!! ATGGATGAAAGTGTTGTGGA+AGG - chr4_2:63718631-63718650 None:intergenic 40.0%
GAAAACCTACTGCAAAAGCA+AGG + chr4_2:63718734-63718753 Msa0614630:CDS 40.0%
CACCATAACCAGATTGTTTG+CGG - chr4_2:63718845-63718864 None:intergenic 40.0%
!! CTTTTTGTGAAAGACGGGTT+TGG - chr4_2:63718874-63718893 None:intergenic 40.0%
CAAACCCGTCTTTCACAAAA+AGG + chr4_2:63718872-63718891 Msa0614630:CDS 40.0%
!!! TGTTCTGATTTTGGGTTCTG+TGG + chr4_2:63719105-63719124 Msa0614630:intron 40.0%
!!! GTTCTGATTTTGGGTTCTGT+GGG + chr4_2:63719106-63719125 Msa0614630:intron 40.0%
!!! ATTTTGGGTTCTGTGGGTAA+TGG + chr4_2:63719112-63719131 Msa0614630:intron 40.0%
!!! TTTTGGGTTCTGTGGGTAAT+GGG + chr4_2:63719113-63719132 Msa0614630:intron 40.0%
!! AGGAACATCTCTGTTTTAGG+TGG + chr4_2:63719199-63719218 Msa0614630:exon 40.0%
GTAGTTTACCATTGTTCCAG+AGG - chr4_2:63718591-63718610 None:intergenic 40.0%
TGTTGTGGAAGGTTAGATGA+GGG - chr4_2:63718620-63718639 None:intergenic 40.0%
!! ATGGATGAAAGTGTTGTGGA+AGG - chr4_2:63718631-63718650 None:intergenic 40.0%
GAAAACCTACTGCAAAAGCA+AGG + chr4_2:63718734-63718753 Msa0614630:CDS 40.0%
CACCATAACCAGATTGTTTG+CGG - chr4_2:63718845-63718864 None:intergenic 40.0%
!! CTTTTTGTGAAAGACGGGTT+TGG - chr4_2:63718874-63718893 None:intergenic 40.0%
CAAACCCGTCTTTCACAAAA+AGG + chr4_2:63718872-63718891 Msa0614630:CDS 40.0%
!!! TGTTCTGATTTTGGGTTCTG+TGG + chr4_2:63719105-63719124 Msa0614630:intron 40.0%
!!! GTTCTGATTTTGGGTTCTGT+GGG + chr4_2:63719106-63719125 Msa0614630:intron 40.0%
!!! ATTTTGGGTTCTGTGGGTAA+TGG + chr4_2:63719112-63719131 Msa0614630:intron 40.0%
!!! TTTTGGGTTCTGTGGGTAAT+GGG + chr4_2:63719113-63719132 Msa0614630:intron 40.0%
!! AGGAACATCTCTGTTTTAGG+TGG + chr4_2:63719199-63719218 Msa0614630:exon 40.0%
!! AAACCACACCTCTGGAACAA+TGG + chr4_2:63718580-63718599 Msa0614630:exon 45.0%
TTACCATTGTTCCAGAGGTG+TGG - chr4_2:63718586-63718605 None:intergenic 45.0%
GTGTTGTGGAAGGTTAGATG+AGG - chr4_2:63718621-63718640 None:intergenic 45.0%
TAAAGATTCCATCGCTGCTC+AGG + chr4_2:63718803-63718822 Msa0614630:CDS 45.0%
AAAGATTCCATCGCTGCTCA+GGG + chr4_2:63718804-63718823 Msa0614630:CDS 45.0%
CGTTATGACCGCAAACAATC+TGG + chr4_2:63718834-63718853 Msa0614630:CDS 45.0%
GACCGCAAACAATCTGGTTA+TGG + chr4_2:63718840-63718859 Msa0614630:CDS 45.0%
CGCAAACAATCTGGTTATGG+TGG + chr4_2:63718843-63718862 Msa0614630:CDS 45.0%
!! AGGTGCAAGCACTTTGAGAT+TGG + chr4_2:63719158-63719177 Msa0614630:CDS 45.0%
!! TGCAAGCACTTTGAGATTGG+TGG + chr4_2:63719161-63719180 Msa0614630:CDS 45.0%
!! TGAGATTGGTGGTGACAAGA+AGG + chr4_2:63719172-63719191 Msa0614630:CDS 45.0%
!! GAGATTGGTGGTGACAAGAA+GGG + chr4_2:63719173-63719192 Msa0614630:CDS 45.0%
! ACTCAAGTTGTTGAGGACTG+AGG + chr4_2:63719575-63719594 Msa0614630:three_prime_UTR 45.0%
!! AAACCACACCTCTGGAACAA+TGG + chr4_2:63718580-63718599 Msa0614630:exon 45.0%
TTACCATTGTTCCAGAGGTG+TGG - chr4_2:63718586-63718605 None:intergenic 45.0%
GTGTTGTGGAAGGTTAGATG+AGG - chr4_2:63718621-63718640 None:intergenic 45.0%
TAAAGATTCCATCGCTGCTC+AGG + chr4_2:63718803-63718822 Msa0614630:CDS 45.0%
AAAGATTCCATCGCTGCTCA+GGG + chr4_2:63718804-63718823 Msa0614630:CDS 45.0%
CGTTATGACCGCAAACAATC+TGG + chr4_2:63718834-63718853 Msa0614630:CDS 45.0%
GACCGCAAACAATCTGGTTA+TGG + chr4_2:63718840-63718859 Msa0614630:CDS 45.0%
CGCAAACAATCTGGTTATGG+TGG + chr4_2:63718843-63718862 Msa0614630:CDS 45.0%
!! AGGTGCAAGCACTTTGAGAT+TGG + chr4_2:63719158-63719177 Msa0614630:CDS 45.0%
!! TGCAAGCACTTTGAGATTGG+TGG + chr4_2:63719161-63719180 Msa0614630:CDS 45.0%
!! TGAGATTGGTGGTGACAAGA+AGG + chr4_2:63719172-63719191 Msa0614630:CDS 45.0%
!! GAGATTGGTGGTGACAAGAA+GGG + chr4_2:63719173-63719192 Msa0614630:CDS 45.0%
! ACTCAAGTTGTTGAGGACTG+AGG + chr4_2:63719575-63719594 Msa0614630:three_prime_UTR 45.0%
! CCAGAGGTGTGGTTTGAGAT+CGG - chr4_2:63718575-63718594 None:intergenic 50.0%
!! GCACTCCTTGCTTTTGCAGT+AGG - chr4_2:63718742-63718761 None:intergenic 50.0%
GTGTTGAGGCTTCAGTGTCA+AGG + chr4_2:63719022-63719041 Msa0614630:CDS 50.0%
GGTGGTGACAAGAAGGGAAA+AGG + chr4_2:63719179-63719198 Msa0614630:CDS 50.0%
!! ACTAGGGTGCCGCTAAACTA+GGG - chr4_2:63719416-63719435 None:intergenic 50.0%
!! AACTAGGGTGCCGCTAAACT+AGG - chr4_2:63719417-63719436 None:intergenic 50.0%
AGTTGTTGAGGACTGAGGAG+TGG + chr4_2:63719580-63719599 Msa0614630:three_prime_UTR 50.0%
! CCAGAGGTGTGGTTTGAGAT+CGG - chr4_2:63718575-63718594 None:intergenic 50.0%
!! GCACTCCTTGCTTTTGCAGT+AGG - chr4_2:63718742-63718761 None:intergenic 50.0%
GTGTTGAGGCTTCAGTGTCA+AGG + chr4_2:63719022-63719041 Msa0614630:CDS 50.0%
GGTGGTGACAAGAAGGGAAA+AGG + chr4_2:63719179-63719198 Msa0614630:CDS 50.0%
!! ACTAGGGTGCCGCTAAACTA+GGG - chr4_2:63719416-63719435 None:intergenic 50.0%
!! AACTAGGGTGCCGCTAAACT+AGG - chr4_2:63719417-63719436 None:intergenic 50.0%
AGTTGTTGAGGACTGAGGAG+TGG + chr4_2:63719580-63719599 Msa0614630:three_prime_UTR 50.0%
GGGCAAACGAAGAGTTGAGG+AGG - chr4_2:63718550-63718569 None:intergenic 55.0%
GCTGGGCAAACGAAGAGTTG+AGG - chr4_2:63718553-63718572 None:intergenic 55.0%
! GGTGTGGTTTGAGATCGGCT+GGG - chr4_2:63718570-63718589 None:intergenic 55.0%
! AGGTGTGGTTTGAGATCGGC+TGG - chr4_2:63718571-63718590 None:intergenic 55.0%
CCGATCTCAAACCACACCTC+TGG + chr4_2:63718572-63718591 Msa0614630:five_prime_UTR 55.0%
! ACGTTTTCCCTGAGCAGCGA+TGG - chr4_2:63718814-63718833 None:intergenic 55.0%
GGGCAAACGAAGAGTTGAGG+AGG - chr4_2:63718550-63718569 None:intergenic 55.0%
GCTGGGCAAACGAAGAGTTG+AGG - chr4_2:63718553-63718572 None:intergenic 55.0%
! GGTGTGGTTTGAGATCGGCT+GGG - chr4_2:63718570-63718589 None:intergenic 55.0%
! AGGTGTGGTTTGAGATCGGC+TGG - chr4_2:63718571-63718590 None:intergenic 55.0%
CCGATCTCAAACCACACCTC+TGG + chr4_2:63718572-63718591 Msa0614630:five_prime_UTR 55.0%
! ACGTTTTCCCTGAGCAGCGA+TGG - chr4_2:63718814-63718833 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 63718537 63719608 63718537 ID=Msa0614630;Name=Msa0614630
chr4_2 mRNA 63718537 63719608 63718537 ID=Msa0614630-mRNA-1;Parent=Msa0614630;Name=Msa0614630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=62|1|1|1|1|1|4|391|105
chr4_2 exon 63718537 63718601 63718537 ID=Msa0614630-mRNA-1:exon:17802;Parent=Msa0614630-mRNA-1
chr4_2 exon 63718714 63718893 63718714 ID=Msa0614630-mRNA-1:exon:17803;Parent=Msa0614630-mRNA-1
chr4_2 exon 63719001 63719075 63719001 ID=Msa0614630-mRNA-1:exon:17804;Parent=Msa0614630-mRNA-1
chr4_2 exon 63719158 63719608 63719158 ID=Msa0614630-mRNA-1:exon:17805;Parent=Msa0614630-mRNA-1
chr4_2 five_prime_UTR 63718537 63718598 63718537 ID=Msa0614630-mRNA-1:five_prime_utr;Parent=Msa0614630-mRNA-1
chr4_2 CDS 63718599 63718601 63718599 ID=Msa0614630-mRNA-1:cds;Parent=Msa0614630-mRNA-1
chr4_2 CDS 63718714 63718893 63718714 ID=Msa0614630-mRNA-1:cds;Parent=Msa0614630-mRNA-1
chr4_2 CDS 63719001 63719075 63719001 ID=Msa0614630-mRNA-1:cds;Parent=Msa0614630-mRNA-1
chr4_2 CDS 63719158 63719217 63719158 ID=Msa0614630-mRNA-1:cds;Parent=Msa0614630-mRNA-1
chr4_2 three_prime_UTR 63719218 63719608 63719218 ID=Msa0614630-mRNA-1:three_prime_utr;Parent=Msa0614630-mRNA-1
Gene Sequence

>Msa0614630

ATGGTGAACGTTCCAAAGACAAAGAAAACCTACTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTACACAAAGTTACCCAATACAAAAAGGGTAAAGATTCCATCGCTGCTCAGGGAAAACGTCGTTATGACCGCAAACAATCTGGTTATGGTGGACAGACCAAACCCGTCTTTCACAAAAAGGCAAAAACTACTAAGAAAATTGTGTTGAGGCTTCAGTGTCAAGGTTGCAAGCATGTTTCACAACACGCAATTAAGAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACATCTCTGTTTTAG
Protein sequence

>Msa0614630

MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF*