Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615890 | RHN62931.1 | 96.074 | 484 | 18 | 1 | 1 | 484 | 1 | 483 | 0.0 | 969 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615890 | sp|Q84TK1|BH010_ARATH | 35.742 | 512 | 218 | 15 | 15 | 482 | 12 | 456 | 4.52e-74 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0615890 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615890 | Msa0699120 | 0.878457 | 2.764929e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615890 | MtrunA17_Chr4g0052821 | 96.074 | 484 | 18 | 1 | 1 | 484 | 1 | 483 | 0.0 | 969 |
| Msa0615890 | MtrunA17_Chr4g0052841 | 76.566 | 495 | 89 | 7 | 1 | 481 | 1 | 482 | 0.0 | 681 |
| Msa0615890 | MtrunA17_Chr3g0131691 | 27.386 | 241 | 140 | 6 | 257 | 469 | 243 | 476 | 4.39e-17 | 83.6 |
| Msa0615890 | MtrunA17_Chr0c01g0489461 | 25.128 | 195 | 129 | 3 | 292 | 471 | 197 | 389 | 6.21e-14 | 73.6 |
| Msa0615890 | MtrunA17_Chr1g0185621 | 30.968 | 155 | 98 | 4 | 284 | 432 | 463 | 614 | 4.45e-12 | 68.6 |
| Msa0615890 | MtrunA17_Chr8g0366751 | 29.032 | 155 | 105 | 2 | 285 | 436 | 456 | 608 | 7.03e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615890 | AT2G31220.1 | 35.812 | 511 | 217 | 15 | 16 | 482 | 2 | 445 | 3.90e-75 | 243 |
| Msa0615890 | AT2G31220.2 | 35.742 | 512 | 218 | 15 | 15 | 482 | 12 | 456 | 4.59e-75 | 243 |
| Msa0615890 | AT1G06170.2 | 35.934 | 487 | 216 | 16 | 11 | 482 | 6 | 411 | 1.78e-71 | 233 |
| Msa0615890 | AT1G06170.1 | 35.934 | 487 | 216 | 16 | 11 | 482 | 6 | 411 | 1.78e-71 | 233 |
| Msa0615890 | AT2G31210.1 | 34.118 | 510 | 212 | 17 | 11 | 481 | 1 | 425 | 2.65e-70 | 230 |
| Msa0615890 | AT1G32640.1 | 29.193 | 161 | 87 | 5 | 285 | 436 | 446 | 588 | 1.22e-13 | 73.9 |
| Msa0615890 | AT5G46760.1 | 32.258 | 155 | 93 | 4 | 285 | 436 | 409 | 554 | 4.57e-12 | 68.9 |
| Msa0615890 | AT4G17880.1 | 30.263 | 152 | 96 | 2 | 285 | 436 | 410 | 551 | 1.09e-11 | 67.4 |
| Msa0615890 | AT3G24140.1 | 24.876 | 201 | 134 | 4 | 292 | 476 | 199 | 398 | 1.18e-11 | 67.0 |
| Msa0615890 | AT3G24140.2 | 24.876 | 201 | 134 | 4 | 292 | 476 | 199 | 398 | 1.39e-11 | 66.6 |
| Msa0615890 | AT1G12860.2 | 25.294 | 170 | 109 | 3 | 290 | 452 | 266 | 424 | 2.67e-11 | 65.9 |
| Msa0615890 | AT5G65640.1 | 28.902 | 173 | 105 | 4 | 284 | 456 | 171 | 325 | 3.36e-11 | 65.1 |
| Msa0615890 | AT2G31215.1 | 50.725 | 69 | 33 | 1 | 283 | 351 | 16 | 83 | 5.83e-11 | 60.5 |
| Msa0615890 | AT1G12860.1 | 24.747 | 198 | 128 | 5 | 290 | 479 | 266 | 450 | 6.60e-11 | 64.7 |
| Msa0615890 | AT3G26744.1 | 25.123 | 203 | 125 | 6 | 290 | 479 | 306 | 494 | 9.84e-11 | 64.3 |
| Msa0615890 | AT3G26744.4 | 25.123 | 203 | 125 | 6 | 290 | 479 | 306 | 494 | 9.84e-11 | 64.3 |
| Msa0615890 | AT3G26744.2 | 25.123 | 203 | 125 | 6 | 290 | 479 | 306 | 494 | 9.84e-11 | 64.3 |
Find 126 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTTACTTTGGTGGAATT+TGG | 0.152678 | 4_2:+65438687 | Msa0615880:intron |
| CAGTTTGCTCATGCATATTT+TGG | 0.176939 | 4_2:+65439606 | Msa0615880:intron |
| AGGGATTGTAGCTTTGTTTA+TGG | 0.188979 | 4_2:+65439201 | Msa0615880:intron |
| CACTTGATTTGGCATGGTTT+GGG | 0.215941 | 4_2:+65439520 | Msa0615880:intron |
| CAACAACATGGATAACATTT+TGG | 0.230373 | 4_2:-65439312 | Msa0615890:CDS |
| GAACCTTCCTGCACAGTTTC+CGG | 0.273029 | 4_2:-65438952 | Msa0615890:CDS |
| CCACTTGATTTGGCATGGTT+TGG | 0.275899 | 4_2:+65439519 | Msa0615880:intron |
| TGTGTAGTTGGTGGTATTCT+TGG | 0.280012 | 4_2:+65439225 | Msa0615880:intron |
| ATAGCATTGAAGAGAATTTC+AGG | 0.287093 | 4_2:-65439478 | Msa0615890:CDS |
| TCAAGGAATGGTTCTCGTTT+TGG | 0.293055 | 4_2:-65438876 | Msa0615890:CDS |
| AGACCAATGAGTTCAGTTTC+AGG | 0.294029 | 4_2:-65439635 | None:intergenic |
| TATTTACTTTGGTGGAATTT+GGG | 0.298058 | 4_2:+65438688 | Msa0615880:intron |
| GCTGTTTGTTTCCAAGGTTA+TGG | 0.321288 | 4_2:-65438056 | Msa0615890:CDS |
| CTCATCGAGTAATGGAAATT+AGG | 0.322097 | 4_2:+65439050 | Msa0615880:intron |
| TTACCTGCAACCACTTGATT+TGG | 0.325403 | 4_2:+65439509 | Msa0615880:intron |
| TGGGGAGAGTTATTATCTTC+TGG | 0.329534 | 4_2:+65439539 | Msa0615880:intron |
| TTTGTTTATGGTTGTGTAGT+TGG | 0.331934 | 4_2:+65439213 | Msa0615880:intron |
| CAGCAGTTGTCCCACATAAT+AGG | 0.332222 | 4_2:-65437786 | Msa0615890:CDS |
| GAGATTGAGGCAATTCTCTA+AGG | 0.339121 | 4_2:+65438928 | Msa0615880:intron |
| AGCTGTCACATGAAGCCTTT+TGG | 0.351110 | 4_2:-65438205 | Msa0615890:CDS |
| CTTGAGTTGTCTGAGCCTAT+TGG | 0.353217 | 4_2:+65439011 | Msa0615880:intron |
| AACATTGCACAACAAAATCT+TGG | 0.361426 | 4_2:-65439359 | Msa0615890:CDS |
| GGACCCTAGTGCTCAGGATA+TGG | 0.374887 | 4_2:-65439261 | Msa0615890:CDS |
| TTGGAACTTAACCATGTTGC+AGG | 0.378869 | 4_2:-65438022 | Msa0615890:CDS |
| TATCAACCTTGCTATTGAAC+AGG | 0.396384 | 4_2:+65437972 | Msa0615880:intron |
| TTGCTTGCTGTTTGTTTCCA+AGG | 0.397168 | 4_2:-65438062 | Msa0615890:CDS |
| TTGGTGGTATTCTTGGTGAT+TGG | 0.402907 | 4_2:+65439232 | Msa0615880:intron |
| ATGAGGGTCTTGAATGGTTG+AGG | 0.403582 | 4_2:+65439181 | Msa0615880:intron |
| TTTATTGTTATTTACTTTGG+TGG | 0.406527 | 4_2:+65438680 | Msa0615880:intron |
| CAAAATATGCATGAGCAAAC+TGG | 0.407375 | 4_2:-65439605 | Msa0615890:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4_2:-65439347 | Msa0615890:CDS |
| TGGTGAAGATTTAGTACATC+TGG | 0.421373 | 4_2:+65439149 | Msa0615880:intron |
| ATGGAGGGAGATGGAGGTAT+GGG | 0.422492 | 4_2:-65438840 | Msa0615890:CDS |
| GGGGATGAGATGGAGGGAGA+TGG | 0.422522 | 4_2:-65438849 | Msa0615890:CDS |
| ATGCAAGTGCTATAGCAAAC+AGG | 0.424664 | 4_2:-65437837 | Msa0615890:CDS |
| ATAGATGAAGCTGAGGATCT+AGG | 0.426468 | 4_2:+65439122 | Msa0615880:intron |
| GATGGAGGGAGATGGAGGTA+TGG | 0.426821 | 4_2:-65438841 | Msa0615890:CDS |
| ATGCCAAATCAAGTGGTTGC+AGG | 0.427884 | 4_2:-65439512 | Msa0615890:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.433519 | 4_2:-65439026 | Msa0615890:CDS |
| GAGACATCTTCCAGGTGTTG+TGG | 0.439965 | 4_2:+65439416 | Msa0615880:intron |
| AAAATCTTGGTTTGAACATA+GGG | 0.440034 | 4_2:-65439346 | Msa0615890:CDS |
| AAACAGGGTGATTGATGTTC+TGG | 0.444364 | 4_2:-65437821 | Msa0615890:CDS |
| TGGTGGAGGGGATGAGATGG+AGG | 0.452096 | 4_2:-65438856 | Msa0615890:CDS |
| GATGTCTCCACTTATACAAA+TGG | 0.460153 | 4_2:-65439401 | Msa0615890:CDS |
| TATAAGTGGAGACATCTTCC+AGG | 0.463314 | 4_2:+65439408 | Msa0615880:intron |
| GAGGTCCTTATGCTTCCATC+TGG | 0.463883 | 4_2:+65438178 | Msa0615880:intron |
| AGTGAATCCATTTGTATAAG+TGG | 0.466255 | 4_2:+65439394 | Msa0615880:intron |
| AGACATCTTCCAGGTGTTGT+GGG | 0.476303 | 4_2:+65439417 | Msa0615880:intron |
| ACAACCTACATCCTATTATG+TGG | 0.478099 | 4_2:+65437775 | Msa0615880:intron |
| GATGAGATGGAGGGAGATGG+AGG | 0.485707 | 4_2:-65438846 | Msa0615890:CDS |
| CAAACTGTTTCAGAGAAAGA+AGG | 0.486584 | 4_2:-65438089 | Msa0615890:CDS |
| AACTGTGCAGGAAGGTTCAT+AGG | 0.487200 | 4_2:+65438957 | Msa0615880:intron |
| TCATCACAACCCACAACACC+TGG | 0.490418 | 4_2:-65439426 | Msa0615890:CDS |
| AGTTGGGTTTGTGATGCAAA+TGG | 0.496699 | 4_2:+65439082 | Msa0615880:intron |
| ACAAAGAAGAGAGCAATTGA+AGG | 0.497369 | 4_2:-65438739 | Msa0615890:CDS |
| CTAAGGGCCGGAAACTGTGC+AGG | 0.501150 | 4_2:+65438945 | Msa0615880:intron |
| TGAGGGTCTTGAATGGTTGA+GGG | 0.501208 | 4_2:+65439182 | Msa0615880:intron |
| CAAGAAAACTCATCGAGTAA+TGG | 0.504530 | 4_2:+65439042 | Msa0615880:intron |
| TGCAACCACTTGATTTGGCA+TGG | 0.510199 | 4_2:+65439514 | Msa0615880:intron |
| CTTCCATCTGGATCACCAAA+AGG | 0.510562 | 4_2:+65438190 | Msa0615880:intron |
| AGATGGAGGTATGGGAGTGT+CGG | 0.512294 | 4_2:-65438832 | Msa0615890:CDS |
| GGAAGGTTCATAGGAAATAG+AGG | 0.514568 | 4_2:+65438966 | Msa0615880:intron |
| TAGTTTCCTGTTCAATAGCA+AGG | 0.522557 | 4_2:-65437978 | Msa0615890:intron |
| ACGAGAACCATTCCTTGAGT+TGG | 0.523595 | 4_2:+65438881 | Msa0615880:intron |
| GGTTATGGAGGAACTTCAGT+TGG | 0.523976 | 4_2:-65438041 | Msa0615890:CDS |
| TCTCCTGAAACTGAACTCAT+TGG | 0.525396 | 4_2:+65439632 | Msa0615880:intron |
| AGTGAATGAGCTGAAACTAT+TGG | 0.528670 | 4_2:-65438293 | Msa0615890:CDS |
| GGTGTATCAGAATTCGAGTT+GGG | 0.534079 | 4_2:-65439282 | Msa0615890:CDS |
| TAGTCCATATCCTGAGCACT+AGG | 0.537172 | 4_2:+65439257 | Msa0615880:intron |
| CTGAAGTTCCTCCATAACCT+TGG | 0.541600 | 4_2:+65438045 | Msa0615880:intron |
| GTTTATGGTTGTGTAGTTGG+TGG | 0.542610 | 4_2:+65439216 | Msa0615880:intron |
| TAGACGTGAGGGAGAGATTG+AGG | 0.548170 | 4_2:+65438915 | Msa0615880:intron |
| AAGACAGTGAGGTTGATGTT+CGG | 0.551962 | 4_2:-65438135 | Msa0615890:CDS |
| GAGTTGGGACCCTAGTGCTC+AGG | 0.552970 | 4_2:-65439267 | Msa0615890:CDS |
| AACACCTTCTGCCATTGTGT+CGG | 0.553819 | 4_2:+65439571 | Msa0615880:intron |
| GTGATCCAGATGGAAGCATA+AGG | 0.554959 | 4_2:-65438183 | Msa0615890:CDS |
| ACATCTGGTGAAGGATAATG+AGG | 0.556346 | 4_2:+65439164 | Msa0615880:intron |
| GGTGGAGGGGATGAGATGGA+GGG | 0.559231 | 4_2:-65438855 | Msa0615890:CDS |
| GGAGAAGAAAAGACACGAGA+TGG | 0.559458 | 4_2:-65438269 | Msa0615890:CDS |
| TGGGTTTGTGATGCAAATGG+TGG | 0.560503 | 4_2:+65439085 | Msa0615880:intron |
| TTTGTGATGCAAATGGTGGA+TGG | 0.560585 | 4_2:+65439089 | Msa0615880:intron |
| AGAGAATTTCAGGCCTTCTG+TGG | 0.563104 | 4_2:-65439468 | Msa0615890:CDS |
| TGAGGCAATTCTCTAAGGGC+CGG | 0.565775 | 4_2:+65438933 | Msa0615880:intron |
| ACTTGATTTGGCATGGTTTG+GGG | 0.567633 | 4_2:+65439521 | Msa0615880:intron |
| GAACCATTCCTTGAGTTGGT+AGG | 0.569140 | 4_2:+65438885 | Msa0615880:intron |
| ATGGAAGCATAAGGACCTCA+TGG | 0.569401 | 4_2:-65438174 | Msa0615890:CDS |
| TCACTTATGCAGGTAACTGA+AGG | 0.570501 | 4_2:-65437871 | Msa0615890:intron |
| CCAAACCATGCCAAATCAAG+TGG | 0.578899 | 4_2:-65439519 | Msa0615890:CDS |
| TGTCCCACATAATAGGATGT+AGG | 0.580034 | 4_2:-65437779 | None:intergenic |
| GAATTTCAGGCCTTCTGTGG+AGG | 0.580177 | 4_2:-65439465 | Msa0615890:CDS |
| AGGATAATGAGGGTCTTGAA+TGG | 0.581908 | 4_2:+65439175 | Msa0615880:intron |
| GTTTGTTTCCAAGGTTATGG+AGG | 0.585600 | 4_2:-65438053 | Msa0615890:CDS |
| CAACCTACATCCTATTATGT+GGG | 0.595003 | 4_2:+65437776 | Msa0615880:intron |
| GATTCCGACACAATGGCAGA+AGG | 0.597510 | 4_2:-65439575 | Msa0615890:CDS |
| ATGCCTACCAACTCAAGGAA+TGG | 0.597546 | 4_2:-65438888 | Msa0615890:CDS |
| CAAAGAAGAGAGCAATTGAA+GGG | 0.598165 | 4_2:-65438738 | Msa0615890:CDS |
| TAAGGACCTCATGGCTGCAG+AGG | 0.598266 | 4_2:-65438165 | Msa0615890:CDS |
| TGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4_2:+65438159 | Msa0615880:intron |
| AAGCTGAGGATCTAGGAAAG+TGG | 0.606657 | 4_2:+65439129 | Msa0615880:intron |
| GAACTTAACCATGTTGCAGG+TGG | 0.608004 | 4_2:-65438019 | Msa0615890:CDS |
| AGATTGAGGCAATTCTCTAA+GGG | 0.609395 | 4_2:+65438929 | Msa0615880:intron |
| AGTTGTCTGAGCCTATTGGA+AGG | 0.611422 | 4_2:+65439015 | Msa0615880:intron |
| ACAGGATGACAGAGCATCAG+TGG | 0.612086 | 4_2:-65438356 | Msa0615890:intron |
| CAACATGTCCACCTGCAACA+TGG | 0.612887 | 4_2:+65438011 | Msa0615880:intron |
| CATGTTGCAGGTGGACATGT+TGG | 0.614636 | 4_2:-65438010 | Msa0615890:CDS |
| TGCAAGTGCTATAGCAAACA+GGG | 0.617014 | 4_2:-65437836 | Msa0615890:CDS |
| ATAGCATGCCTACCAACTCA+AGG | 0.617097 | 4_2:-65438893 | Msa0615890:CDS |
| TAAGAGAATTCCTCCACAGA+AGG | 0.619324 | 4_2:+65439455 | Msa0615880:intron |
| TGTGAGAATAGATGAAGCTG+AGG | 0.619586 | 4_2:+65439115 | Msa0615880:intron |
| AGATTTAGTACATCTGGTGA+AGG | 0.621346 | 4_2:+65439155 | Msa0615880:intron |
| GAATGAGCTGAAACTATTGG+TGG | 0.621989 | 4_2:-65438290 | Msa0615890:CDS |
| AGGTGTATCAGAATTCGAGT+TGG | 0.627894 | 4_2:-65439283 | Msa0615890:CDS |
| AGGGAAGATACAAAATCTTG+AGG | 0.628748 | 4_2:-65438719 | Msa0615890:CDS |
| ATAGGCTCAGACAACTCAAG+TGG | 0.630249 | 4_2:-65439008 | Msa0615890:CDS |
| ATCGAGTAATGGAAATTAGG+TGG | 0.631613 | 4_2:+65439053 | Msa0615880:intron |
| GATGACAGAGCATCAGTGGT+CGG | 0.636237 | 4_2:-65438352 | Msa0615890:CDS |
| GGGCCGGAAACTGTGCAGGA+AGG | 0.638113 | 4_2:+65438949 | Msa0615880:intron |
| AGTCCATATCCTGAGCACTA+GGG | 0.638599 | 4_2:+65439258 | Msa0615880:intron |
| GGGAGTGTCGGAATTCAACA+AGG | 0.647586 | 4_2:-65438820 | Msa0615890:CDS |
| TAGGCATGCTATAGACGTGA+GGG | 0.648613 | 4_2:+65438904 | Msa0615880:intron |
| AGCTACAGAACATTTGACAA+CGG | 0.658358 | 4_2:-65438766 | Msa0615890:CDS |
| GTAGGCATGCTATAGACGTG+AGG | 0.659082 | 4_2:+65438903 | Msa0615880:intron |
| TTGCTTTGATTCCGACACAA+TGG | 0.659636 | 4_2:-65439582 | Msa0615890:CDS |
| CATCTGGTGAAGGATAATGA+GGG | 0.694690 | 4_2:+65439165 | Msa0615880:intron |
| GAACTACTACTACAACAACA+TGG | 0.699767 | 4_2:-65439324 | Msa0615890:CDS |
| GAGGAAATCAAAAGACAGTG+AGG | 0.707672 | 4_2:-65438146 | Msa0615890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTGTTATTTACTT+TGG | + | chr4_2:65438735-65438754 | Msa0615880:intron | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | + | chr4_2:65439466-65439485 | Msa0615880:intron | 10.0% |
| !!! | TTATTTATTGTTATTTACTT+TGG | + | chr4_2:65438735-65438754 | Msa0615880:intron | 10.0% |
| !!! | AATTTTATAAAGTATTTACT+TGG | + | chr4_2:65439466-65439485 | Msa0615880:intron | 10.0% |
| !! | TTCATAGATATAATTAGATA+TGG | + | chr4_2:65438777-65438796 | Msa0615880:intron | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | - | chr4_2:65438838-65438857 | Msa0615890:CDS | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | - | chr4_2:65438911-65438930 | Msa0615890:CDS | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | - | chr4_2:65439492-65439511 | Msa0615890:CDS | 15.0% |
| !! | TTCATAGATATAATTAGATA+TGG | + | chr4_2:65438777-65438796 | Msa0615880:intron | 15.0% |
| !!! | TTAAATCTTGAATTATTTTG+AGG | - | chr4_2:65438838-65438857 | Msa0615890:CDS | 15.0% |
| !! | GTTAAAAATGACATTATTAT+TGG | - | chr4_2:65438911-65438930 | Msa0615890:CDS | 15.0% |
| !! | TAGATTTATTACATTTGATT+TGG | - | chr4_2:65439492-65439511 | Msa0615890:CDS | 15.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | + | chr4_2:65438732-65438751 | Msa0615880:intron | 20.0% |
| !! | ACCATGATTTAAATGATTAA+CGG | - | chr4_2:65439014-65439033 | Msa0615890:CDS | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | - | chr4_2:65439511-65439530 | Msa0615890:CDS | 20.0% |
| !!! | TTTATTGTTATTTACTTTGG+TGG | + | chr4_2:65438732-65438751 | Msa0615880:intron | 20.0% |
| !! | ACCATGATTTAAATGATTAA+CGG | - | chr4_2:65439014-65439033 | Msa0615890:CDS | 20.0% |
| !! | TTGGTTATATATTAACTATG+AGG | - | chr4_2:65439511-65439530 | Msa0615890:CDS | 20.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | - | chr4_2:65438063-65438082 | Msa0615890:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | + | chr4_2:65438724-65438743 | Msa0615880:intron | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | + | chr4_2:65438725-65438744 | Msa0615880:intron | 25.0% |
| ! | CCATGATTTAAATGATTAAC+GGG | - | chr4_2:65439015-65439034 | Msa0615890:CDS | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | - | chr4_2:65438063-65438082 | Msa0615890:CDS | 25.0% |
| ! | TATTTACTTTGGTGGAATTT+GGG | + | chr4_2:65438724-65438743 | Msa0615880:intron | 25.0% |
| ! | TTATTTACTTTGGTGGAATT+TGG | + | chr4_2:65438725-65438744 | Msa0615880:intron | 25.0% |
| ! | CCATGATTTAAATGATTAAC+GGG | - | chr4_2:65439015-65439034 | Msa0615890:CDS | 25.0% |
| ! | ATAGCATTGAAGAGAATTTC+AGG | - | chr4_2:65437931-65437950 | Msa0615890:intron | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | + | chr4_2:65438018-65438037 | Msa0615880:intron | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | - | chr4_2:65438050-65438069 | Msa0615890:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | - | chr4_2:65438062-65438081 | Msa0615890:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | - | chr4_2:65438097-65438116 | Msa0615890:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | + | chr4_2:65438199-65438218 | Msa0615880:intron | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | + | chr4_2:65438811-65438830 | Msa0615880:intron | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | - | chr4_2:65438889-65438908 | Msa0615890:CDS | 30.0% |
| CCCGTTAATCATTTAAATCA+TGG | + | chr4_2:65439018-65439037 | Msa0615880:intron | 30.0% | |
| ! | ATAGCATTGAAGAGAATTTC+AGG | - | chr4_2:65437931-65437950 | Msa0615890:intron | 30.0% |
| AGTGAATCCATTTGTATAAG+TGG | + | chr4_2:65438018-65438037 | Msa0615880:intron | 30.0% | |
| AACATTGCACAACAAAATCT+TGG | - | chr4_2:65438050-65438069 | Msa0615890:CDS | 30.0% | |
| ! | CAAAATCTTGGTTTGAACAT+AGG | - | chr4_2:65438062-65438081 | Msa0615890:CDS | 30.0% |
| ! | CAACAACATGGATAACATTT+TGG | - | chr4_2:65438097-65438116 | Msa0615890:CDS | 30.0% |
| TTTGTTTATGGTTGTGTAGT+TGG | + | chr4_2:65438199-65438218 | Msa0615880:intron | 30.0% | |
| ATCTAATGACAAAAGCAAAG+TGG | + | chr4_2:65438811-65438830 | Msa0615880:intron | 30.0% | |
| ! | TTGTTATGTCACTTGTAGTT+TGG | - | chr4_2:65438889-65438908 | Msa0615890:CDS | 30.0% |
| CCCGTTAATCATTTAAATCA+TGG | + | chr4_2:65439018-65439037 | Msa0615880:intron | 30.0% | |
| !! | CAGTTTGCTCATGCATATTT+TGG | + | chr4_2:65437806-65437825 | Msa0615880:intron | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | - | chr4_2:65437804-65437823 | Msa0615890:CDS | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | - | chr4_2:65438008-65438027 | Msa0615890:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | + | chr4_2:65438041-65438060 | Msa0615880:intron | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | + | chr4_2:65438042-65438061 | Msa0615880:intron | 35.0% |
| GAACTACTACTACAACAACA+TGG | - | chr4_2:65438085-65438104 | Msa0615890:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | + | chr4_2:65438211-65438230 | Msa0615880:intron | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | + | chr4_2:65438257-65438276 | Msa0615880:intron | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | + | chr4_2:65438263-65438282 | Msa0615880:intron | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | + | chr4_2:65438346-65438365 | Msa0615880:intron | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | + | chr4_2:65438347-65438366 | Msa0615880:intron | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | + | chr4_2:65438359-65438378 | Msa0615880:intron | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | + | chr4_2:65438362-65438381 | Msa0615880:intron | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | + | chr4_2:65438370-65438389 | Msa0615880:intron | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | - | chr4_2:65438368-65438387 | Msa0615890:intron | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | + | chr4_2:65438483-65438502 | Msa0615880:intron | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | - | chr4_2:65438643-65438662 | Msa0615890:intron | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | - | chr4_2:65438670-65438689 | Msa0615890:intron | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | - | chr4_2:65438671-65438690 | Msa0615890:intron | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | - | chr4_2:65438690-65438709 | Msa0615890:intron | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | - | chr4_2:65439116-65439135 | Msa0615890:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | - | chr4_2:65439320-65439339 | Msa0615890:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | - | chr4_2:65439431-65439450 | Msa0615890:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | + | chr4_2:65439440-65439459 | Msa0615880:intron | 35.0% |
| !! | CAGTTTGCTCATGCATATTT+TGG | + | chr4_2:65437806-65437825 | Msa0615880:intron | 35.0% |
| CAAAATATGCATGAGCAAAC+TGG | - | chr4_2:65437804-65437823 | Msa0615890:CDS | 35.0% | |
| GATGTCTCCACTTATACAAA+TGG | - | chr4_2:65438008-65438027 | Msa0615890:CDS | 35.0% | |
| ! | TGTGCAATGTTTTCTGATGA+GGG | + | chr4_2:65438041-65438060 | Msa0615880:intron | 35.0% |
| ! | TTGTGCAATGTTTTCTGATG+AGG | + | chr4_2:65438042-65438061 | Msa0615880:intron | 35.0% |
| GAACTACTACTACAACAACA+TGG | - | chr4_2:65438085-65438104 | Msa0615890:CDS | 35.0% | |
| !! | AGGGATTGTAGCTTTGTTTA+TGG | + | chr4_2:65438211-65438230 | Msa0615880:intron | 35.0% |
| AGATTTAGTACATCTGGTGA+AGG | + | chr4_2:65438257-65438276 | Msa0615880:intron | 35.0% | |
| TGGTGAAGATTTAGTACATC+TGG | + | chr4_2:65438263-65438282 | Msa0615880:intron | 35.0% | |
| !!! | AATTAGGTGGCTTTTGAGTT+GGG | + | chr4_2:65438346-65438365 | Msa0615880:intron | 35.0% |
| !! | AAATTAGGTGGCTTTTGAGT+TGG | + | chr4_2:65438347-65438366 | Msa0615880:intron | 35.0% |
| ! | ATCGAGTAATGGAAATTAGG+TGG | + | chr4_2:65438359-65438378 | Msa0615880:intron | 35.0% |
| ! | CTCATCGAGTAATGGAAATT+AGG | + | chr4_2:65438362-65438381 | Msa0615880:intron | 35.0% |
| CAAGAAAACTCATCGAGTAA+TGG | + | chr4_2:65438370-65438389 | Msa0615880:intron | 35.0% | |
| ! | CATTACTCGATGAGTTTTCT+TGG | - | chr4_2:65438368-65438387 | Msa0615890:intron | 35.0% |
| AGATTGAGGCAATTCTCTAA+GGG | + | chr4_2:65438483-65438502 | Msa0615880:intron | 35.0% | |
| AGCTACAGAACATTTGACAA+CGG | - | chr4_2:65438643-65438662 | Msa0615890:intron | 35.0% | |
| ACAAAGAAGAGAGCAATTGA+AGG | - | chr4_2:65438670-65438689 | Msa0615890:intron | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+GGG | - | chr4_2:65438671-65438690 | Msa0615890:intron | 35.0% | |
| AGGGAAGATACAAAATCTTG+AGG | - | chr4_2:65438690-65438709 | Msa0615890:intron | 35.0% | |
| AGTGAATGAGCTGAAACTAT+TGG | - | chr4_2:65439116-65439135 | Msa0615890:CDS | 35.0% | |
| CAAACTGTTTCAGAGAAAGA+AGG | - | chr4_2:65439320-65439339 | Msa0615890:CDS | 35.0% | |
| TAGTTTCCTGTTCAATAGCA+AGG | - | chr4_2:65439431-65439450 | Msa0615890:CDS | 35.0% | |
| !! | TATCAACCTTGCTATTGAAC+AGG | + | chr4_2:65439440-65439459 | Msa0615880:intron | 35.0% |
| TTGCTTTGATTCCGACACAA+TGG | - | chr4_2:65437827-65437846 | Msa0615890:CDS | 40.0% | |
| TGGGGAGAGTTATTATCTTC+TGG | + | chr4_2:65437873-65437892 | Msa0615880:intron | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | + | chr4_2:65437891-65437910 | Msa0615880:intron | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | + | chr4_2:65437892-65437911 | Msa0615880:intron | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | + | chr4_2:65437903-65437922 | Msa0615880:intron | 40.0% | |
| TAAGAGAATTCCTCCACAGA+AGG | + | chr4_2:65437957-65437976 | Msa0615880:intron | 40.0% | |
| TATAAGTGGAGACATCTTCC+AGG | + | chr4_2:65438004-65438023 | Msa0615880:intron | 40.0% | |
| !!! | GGATAACATTTTGGAGCAAG+AGG | - | chr4_2:65438106-65438125 | Msa0615890:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | - | chr4_2:65438126-65438145 | Msa0615890:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | - | chr4_2:65438127-65438146 | Msa0615890:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | + | chr4_2:65438180-65438199 | Msa0615880:intron | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | + | chr4_2:65438187-65438206 | Msa0615880:intron | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | + | chr4_2:65438196-65438215 | Msa0615880:intron | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | + | chr4_2:65438237-65438256 | Msa0615880:intron | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | + | chr4_2:65438247-65438266 | Msa0615880:intron | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | + | chr4_2:65438248-65438267 | Msa0615880:intron | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | + | chr4_2:65438290-65438309 | Msa0615880:intron | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | + | chr4_2:65438297-65438316 | Msa0615880:intron | 40.0% | |
| ! | TTTGTGATGCAAATGGTGGA+TGG | + | chr4_2:65438323-65438342 | Msa0615880:intron | 40.0% |
| AGTTGGGTTTGTGATGCAAA+TGG | + | chr4_2:65438330-65438349 | Msa0615880:intron | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | - | chr4_2:65438383-65438402 | Msa0615890:intron | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | + | chr4_2:65438446-65438465 | Msa0615880:intron | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | + | chr4_2:65438484-65438503 | Msa0615880:intron | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | - | chr4_2:65438533-65438552 | Msa0615890:intron | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | - | chr4_2:65438605-65438624 | Msa0615890:intron | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | - | chr4_2:65438617-65438636 | Msa0615890:intron | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | - | chr4_2:65439035-65439054 | Msa0615890:CDS | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | - | chr4_2:65439119-65439138 | Msa0615890:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | - | chr4_2:65439263-65439282 | Msa0615890:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | - | chr4_2:65439274-65439293 | Msa0615890:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | - | chr4_2:65439347-65439366 | Msa0615890:CDS | 40.0% |
| GCTGTTTGTTTCCAAGGTTA+TGG | - | chr4_2:65439353-65439372 | Msa0615890:CDS | 40.0% | |
| GTTTGTTTCCAAGGTTATGG+AGG | - | chr4_2:65439356-65439375 | Msa0615890:CDS | 40.0% | |
| TTGGAACTTAACCATGTTGC+AGG | - | chr4_2:65439387-65439406 | Msa0615890:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | - | chr4_2:65439528-65439547 | Msa0615890:CDS | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | - | chr4_2:65439538-65439557 | Msa0615890:CDS | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | - | chr4_2:65439572-65439591 | Msa0615890:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | - | chr4_2:65439573-65439592 | Msa0615890:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | - | chr4_2:65439588-65439607 | Msa0615890:CDS | 40.0% | |
| TTGCTTTGATTCCGACACAA+TGG | - | chr4_2:65437827-65437846 | Msa0615890:CDS | 40.0% | |
| TGGGGAGAGTTATTATCTTC+TGG | + | chr4_2:65437873-65437892 | Msa0615880:intron | 40.0% | |
| !! | ACTTGATTTGGCATGGTTTG+GGG | + | chr4_2:65437891-65437910 | Msa0615880:intron | 40.0% |
| !! | CACTTGATTTGGCATGGTTT+GGG | + | chr4_2:65437892-65437911 | Msa0615880:intron | 40.0% |
| TTACCTGCAACCACTTGATT+TGG | + | chr4_2:65437903-65437922 | Msa0615880:intron | 40.0% | |
| TAAGAGAATTCCTCCACAGA+AGG | + | chr4_2:65437957-65437976 | Msa0615880:intron | 40.0% | |
| TATAAGTGGAGACATCTTCC+AGG | + | chr4_2:65438004-65438023 | Msa0615880:intron | 40.0% | |
| !!! | GGATAACATTTTGGAGCAAG+AGG | - | chr4_2:65438106-65438125 | Msa0615890:CDS | 40.0% |
| AGGTGTATCAGAATTCGAGT+TGG | - | chr4_2:65438126-65438145 | Msa0615890:CDS | 40.0% | |
| ! | GGTGTATCAGAATTCGAGTT+GGG | - | chr4_2:65438127-65438146 | Msa0615890:CDS | 40.0% |
| ! | TTGGTGGTATTCTTGGTGAT+TGG | + | chr4_2:65438180-65438199 | Msa0615880:intron | 40.0% |
| !! | TGTGTAGTTGGTGGTATTCT+TGG | + | chr4_2:65438187-65438206 | Msa0615880:intron | 40.0% |
| GTTTATGGTTGTGTAGTTGG+TGG | + | chr4_2:65438196-65438215 | Msa0615880:intron | 40.0% | |
| AGGATAATGAGGGTCTTGAA+TGG | + | chr4_2:65438237-65438256 | Msa0615880:intron | 40.0% | |
| CATCTGGTGAAGGATAATGA+GGG | + | chr4_2:65438247-65438266 | Msa0615880:intron | 40.0% | |
| ACATCTGGTGAAGGATAATG+AGG | + | chr4_2:65438248-65438267 | Msa0615880:intron | 40.0% | |
| ATAGATGAAGCTGAGGATCT+AGG | + | chr4_2:65438290-65438309 | Msa0615880:intron | 40.0% | |
| TGTGAGAATAGATGAAGCTG+AGG | + | chr4_2:65438297-65438316 | Msa0615880:intron | 40.0% | |
| ! | TTTGTGATGCAAATGGTGGA+TGG | + | chr4_2:65438323-65438342 | Msa0615880:intron | 40.0% |
| AGTTGGGTTTGTGATGCAAA+TGG | + | chr4_2:65438330-65438349 | Msa0615880:intron | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | - | chr4_2:65438383-65438402 | Msa0615890:intron | 40.0% | |
| GGAAGGTTCATAGGAAATAG+AGG | + | chr4_2:65438446-65438465 | Msa0615880:intron | 40.0% | |
| GAGATTGAGGCAATTCTCTA+AGG | + | chr4_2:65438484-65438503 | Msa0615880:intron | 40.0% | |
| ! | TCAAGGAATGGTTCTCGTTT+TGG | - | chr4_2:65438533-65438552 | Msa0615890:intron | 40.0% |
| !! | AACAAGGTCACTGCTTTTGT+TGG | - | chr4_2:65438605-65438624 | Msa0615890:intron | 40.0% |
| ! | GCTTTTGTTGGCAAAGGAAA+AGG | - | chr4_2:65438617-65438636 | Msa0615890:intron | 40.0% |
| !! | GGGCAGTTTTGATCTAATAC+AGG | - | chr4_2:65439035-65439054 | Msa0615890:CDS | 40.0% |
| GAATGAGCTGAAACTATTGG+TGG | - | chr4_2:65439119-65439138 | Msa0615890:CDS | 40.0% | |
| GAGGAAATCAAAAGACAGTG+AGG | - | chr4_2:65439263-65439282 | Msa0615890:CDS | 40.0% | |
| !! | AAGACAGTGAGGTTGATGTT+CGG | - | chr4_2:65439274-65439293 | Msa0615890:CDS | 40.0% |
| !! | TTGCTTGCTGTTTGTTTCCA+AGG | - | chr4_2:65439347-65439366 | Msa0615890:CDS | 40.0% |
| GCTGTTTGTTTCCAAGGTTA+TGG | - | chr4_2:65439353-65439372 | Msa0615890:CDS | 40.0% | |
| GTTTGTTTCCAAGGTTATGG+AGG | - | chr4_2:65439356-65439375 | Msa0615890:CDS | 40.0% | |
| TTGGAACTTAACCATGTTGC+AGG | - | chr4_2:65439387-65439406 | Msa0615890:CDS | 40.0% | |
| ! | ATGAGGTGTTTCACTTATGC+AGG | - | chr4_2:65439528-65439547 | Msa0615890:CDS | 40.0% |
| TCACTTATGCAGGTAACTGA+AGG | - | chr4_2:65439538-65439557 | Msa0615890:CDS | 40.0% | |
| ATGCAAGTGCTATAGCAAAC+AGG | - | chr4_2:65439572-65439591 | Msa0615890:CDS | 40.0% | |
| TGCAAGTGCTATAGCAAACA+GGG | - | chr4_2:65439573-65439592 | Msa0615890:CDS | 40.0% | |
| AAACAGGGTGATTGATGTTC+TGG | - | chr4_2:65439588-65439607 | Msa0615890:CDS | 40.0% | |
| AACACCTTCTGCCATTGTGT+CGG | + | chr4_2:65437841-65437860 | Msa0615880:intron | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | + | chr4_2:65437893-65437912 | Msa0615880:intron | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | - | chr4_2:65437890-65437909 | Msa0615890:intron | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | + | chr4_2:65437898-65437917 | Msa0615880:intron | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | - | chr4_2:65437897-65437916 | Msa0615890:intron | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | - | chr4_2:65437941-65437960 | Msa0615890:intron | 45.0% | |
| ! | AGACATCTTCCAGGTGTTGT+GGG | + | chr4_2:65437995-65438014 | Msa0615880:intron | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | + | chr4_2:65438154-65438173 | Msa0615880:intron | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | + | chr4_2:65438155-65438174 | Msa0615880:intron | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | + | chr4_2:65438230-65438249 | Msa0615880:intron | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | + | chr4_2:65438231-65438250 | Msa0615880:intron | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | + | chr4_2:65438283-65438302 | Msa0615880:intron | 45.0% | |
| TGGGTTTGTGATGCAAATGG+TGG | + | chr4_2:65438327-65438346 | Msa0615880:intron | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | + | chr4_2:65438397-65438416 | Msa0615880:intron | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | + | chr4_2:65438401-65438420 | Msa0615880:intron | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | - | chr4_2:65438401-65438420 | Msa0615890:intron | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | + | chr4_2:65438455-65438474 | Msa0615880:intron | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | + | chr4_2:65438508-65438527 | Msa0615880:intron | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | - | chr4_2:65438516-65438535 | Msa0615890:intron | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | - | chr4_2:65438521-65438540 | Msa0615890:intron | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | + | chr4_2:65438527-65438546 | Msa0615880:intron | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | + | chr4_2:65438531-65438550 | Msa0615880:intron | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | - | chr4_2:65438536-65438555 | Msa0615890:intron | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | - | chr4_2:65438539-65438558 | Msa0615890:intron | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | - | chr4_2:65438540-65438559 | Msa0615890:intron | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | - | chr4_2:65438611-65438630 | Msa0615890:intron | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | - | chr4_2:65439140-65439159 | Msa0615890:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | - | chr4_2:65439204-65439223 | Msa0615890:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | - | chr4_2:65439216-65439235 | Msa0615890:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | + | chr4_2:65439222-65439241 | Msa0615880:intron | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | - | chr4_2:65439226-65439245 | Msa0615890:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | - | chr4_2:65439235-65439254 | Msa0615890:CDS | 45.0% |
| CTGAAGTTCCTCCATAACCT+TGG | + | chr4_2:65439367-65439386 | Msa0615880:intron | 45.0% | |
| GGTTATGGAGGAACTTCAGT+TGG | - | chr4_2:65439368-65439387 | Msa0615890:CDS | 45.0% | |
| GAACTTAACCATGTTGCAGG+TGG | - | chr4_2:65439390-65439409 | Msa0615890:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | - | chr4_2:65439623-65439642 | Msa0615890:CDS | 45.0% | |
| AACACCTTCTGCCATTGTGT+CGG | + | chr4_2:65437841-65437860 | Msa0615880:intron | 45.0% | |
| !! | CCACTTGATTTGGCATGGTT+TGG | + | chr4_2:65437893-65437912 | Msa0615880:intron | 45.0% |
| CCAAACCATGCCAAATCAAG+TGG | - | chr4_2:65437890-65437909 | Msa0615890:intron | 45.0% | |
| !! | TGCAACCACTTGATTTGGCA+TGG | + | chr4_2:65437898-65437917 | Msa0615880:intron | 45.0% |
| ATGCCAAATCAAGTGGTTGC+AGG | - | chr4_2:65437897-65437916 | Msa0615890:intron | 45.0% | |
| AGAGAATTTCAGGCCTTCTG+TGG | - | chr4_2:65437941-65437960 | Msa0615890:intron | 45.0% | |
| ! | AGACATCTTCCAGGTGTTGT+GGG | + | chr4_2:65437995-65438014 | Msa0615880:intron | 45.0% |
| AGTCCATATCCTGAGCACTA+GGG | + | chr4_2:65438154-65438173 | Msa0615880:intron | 45.0% | |
| TAGTCCATATCCTGAGCACT+AGG | + | chr4_2:65438155-65438174 | Msa0615880:intron | 45.0% | |
| TGAGGGTCTTGAATGGTTGA+GGG | + | chr4_2:65438230-65438249 | Msa0615880:intron | 45.0% | |
| ATGAGGGTCTTGAATGGTTG+AGG | + | chr4_2:65438231-65438250 | Msa0615880:intron | 45.0% | |
| AAGCTGAGGATCTAGGAAAG+TGG | + | chr4_2:65438283-65438302 | Msa0615880:intron | 45.0% | |
| TGGGTTTGTGATGCAAATGG+TGG | + | chr4_2:65438327-65438346 | Msa0615880:intron | 45.0% | |
| AGTTGTCTGAGCCTATTGGA+AGG | + | chr4_2:65438397-65438416 | Msa0615880:intron | 45.0% | |
| ! | CTTGAGTTGTCTGAGCCTAT+TGG | + | chr4_2:65438401-65438420 | Msa0615880:intron | 45.0% |
| ATAGGCTCAGACAACTCAAG+TGG | - | chr4_2:65438401-65438420 | Msa0615890:intron | 45.0% | |
| AACTGTGCAGGAAGGTTCAT+AGG | + | chr4_2:65438455-65438474 | Msa0615880:intron | 45.0% | |
| TAGGCATGCTATAGACGTGA+GGG | + | chr4_2:65438508-65438527 | Msa0615880:intron | 45.0% | |
| ATAGCATGCCTACCAACTCA+AGG | - | chr4_2:65438516-65438535 | Msa0615890:intron | 45.0% | |
| ATGCCTACCAACTCAAGGAA+TGG | - | chr4_2:65438521-65438540 | Msa0615890:intron | 45.0% | |
| !! | GAACCATTCCTTGAGTTGGT+AGG | + | chr4_2:65438527-65438546 | Msa0615880:intron | 45.0% |
| ACGAGAACCATTCCTTGAGT+TGG | + | chr4_2:65438531-65438550 | Msa0615880:intron | 45.0% | |
| ! | AGGAATGGTTCTCGTTTTGG+TGG | - | chr4_2:65438536-65438555 | Msa0615890:intron | 45.0% |
| !! | AATGGTTCTCGTTTTGGTGG+AGG | - | chr4_2:65438539-65438558 | Msa0615890:intron | 45.0% |
| !! | ATGGTTCTCGTTTTGGTGGA+GGG | - | chr4_2:65438540-65438559 | Msa0615890:intron | 45.0% |
| !! | GTCACTGCTTTTGTTGGCAA+AGG | - | chr4_2:65438611-65438630 | Msa0615890:intron | 45.0% |
| GGAGAAGAAAAGACACGAGA+TGG | - | chr4_2:65439140-65439159 | Msa0615890:CDS | 45.0% | |
| ! | AGCTGTCACATGAAGCCTTT+TGG | - | chr4_2:65439204-65439223 | Msa0615890:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | - | chr4_2:65439216-65439235 | Msa0615890:CDS | 45.0% |
| CTTCCATCTGGATCACCAAA+AGG | + | chr4_2:65439222-65439241 | Msa0615880:intron | 45.0% | |
| ! | GTGATCCAGATGGAAGCATA+AGG | - | chr4_2:65439226-65439245 | Msa0615890:CDS | 45.0% |
| ! | ATGGAAGCATAAGGACCTCA+TGG | - | chr4_2:65439235-65439254 | Msa0615890:CDS | 45.0% |
| CTGAAGTTCCTCCATAACCT+TGG | + | chr4_2:65439367-65439386 | Msa0615880:intron | 45.0% | |
| GGTTATGGAGGAACTTCAGT+TGG | - | chr4_2:65439368-65439387 | Msa0615890:CDS | 45.0% | |
| GAACTTAACCATGTTGCAGG+TGG | - | chr4_2:65439390-65439409 | Msa0615890:CDS | 45.0% | |
| CAGCAGTTGTCCCACATAAT+AGG | - | chr4_2:65439623-65439642 | Msa0615890:CDS | 45.0% | |
| GATTCCGACACAATGGCAGA+AGG | - | chr4_2:65437834-65437853 | Msa0615890:CDS | 50.0% | |
| GAATTTCAGGCCTTCTGTGG+AGG | - | chr4_2:65437944-65437963 | Msa0615890:intron | 50.0% | |
| TCATCACAACCCACAACACC+TGG | - | chr4_2:65437983-65438002 | Msa0615890:CDS | 50.0% | |
| ! | GAGACATCTTCCAGGTGTTG+TGG | + | chr4_2:65437996-65438015 | Msa0615880:intron | 50.0% |
| GAACCTTCCTGCACAGTTTC+CGG | - | chr4_2:65438457-65438476 | Msa0615890:intron | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | + | chr4_2:65438479-65438498 | Msa0615880:intron | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | + | chr4_2:65438497-65438516 | Msa0615880:intron | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | + | chr4_2:65438509-65438528 | Msa0615880:intron | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | - | chr4_2:65438541-65438560 | Msa0615890:intron | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | - | chr4_2:65438550-65438569 | Msa0615890:intron | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | - | chr4_2:65438569-65438588 | Msa0615890:intron | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | - | chr4_2:65438577-65438596 | Msa0615890:intron | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | - | chr4_2:65438589-65438608 | Msa0615890:intron | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | - | chr4_2:65439053-65439072 | Msa0615890:CDS | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | - | chr4_2:65439057-65439076 | Msa0615890:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | + | chr4_2:65439234-65439253 | Msa0615880:intron | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | + | chr4_2:65439253-65439272 | Msa0615880:intron | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | + | chr4_2:65439401-65439420 | Msa0615880:intron | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | - | chr4_2:65439399-65439418 | Msa0615890:CDS | 50.0% | |
| GATTCCGACACAATGGCAGA+AGG | - | chr4_2:65437834-65437853 | Msa0615890:CDS | 50.0% | |
| GAATTTCAGGCCTTCTGTGG+AGG | - | chr4_2:65437944-65437963 | Msa0615890:intron | 50.0% | |
| TCATCACAACCCACAACACC+TGG | - | chr4_2:65437983-65438002 | Msa0615890:CDS | 50.0% | |
| ! | GAGACATCTTCCAGGTGTTG+TGG | + | chr4_2:65437996-65438015 | Msa0615880:intron | 50.0% |
| GAACCTTCCTGCACAGTTTC+CGG | - | chr4_2:65438457-65438476 | Msa0615890:intron | 50.0% | |
| ! | TGAGGCAATTCTCTAAGGGC+CGG | + | chr4_2:65438479-65438498 | Msa0615880:intron | 50.0% |
| TAGACGTGAGGGAGAGATTG+AGG | + | chr4_2:65438497-65438516 | Msa0615880:intron | 50.0% | |
| GTAGGCATGCTATAGACGTG+AGG | + | chr4_2:65438509-65438528 | Msa0615880:intron | 50.0% | |
| !! | TGGTTCTCGTTTTGGTGGAG+GGG | - | chr4_2:65438541-65438560 | Msa0615890:intron | 50.0% |
| ! | TTTTGGTGGAGGGGATGAGA+TGG | - | chr4_2:65438550-65438569 | Msa0615890:intron | 50.0% |
| ! | ATGGAGGGAGATGGAGGTAT+GGG | - | chr4_2:65438569-65438588 | Msa0615890:intron | 50.0% |
| ! | AGATGGAGGTATGGGAGTGT+CGG | - | chr4_2:65438577-65438596 | Msa0615890:intron | 50.0% |
| !! | GGGAGTGTCGGAATTCAACA+AGG | - | chr4_2:65438589-65438608 | Msa0615890:intron | 50.0% |
| ! | ACAGGATGACAGAGCATCAG+TGG | - | chr4_2:65439053-65439072 | Msa0615890:CDS | 50.0% |
| ! | GATGACAGAGCATCAGTGGT+CGG | - | chr4_2:65439057-65439076 | Msa0615890:CDS | 50.0% |
| GAGGTCCTTATGCTTCCATC+TGG | + | chr4_2:65439234-65439253 | Msa0615880:intron | 50.0% | |
| TGATTTCCTCTGCAGCCATG+AGG | + | chr4_2:65439253-65439272 | Msa0615880:intron | 50.0% | |
| CAACATGTCCACCTGCAACA+TGG | + | chr4_2:65439401-65439420 | Msa0615880:intron | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | - | chr4_2:65439399-65439418 | Msa0615890:CDS | 50.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | - | chr4_2:65438148-65438167 | Msa0615890:CDS | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | - | chr4_2:65438563-65438582 | Msa0615890:intron | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | - | chr4_2:65438568-65438587 | Msa0615890:intron | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | - | chr4_2:65439244-65439263 | Msa0615890:CDS | 55.0% | |
| GGACCCTAGTGCTCAGGATA+TGG | - | chr4_2:65438148-65438167 | Msa0615890:CDS | 55.0% | |
| GATGAGATGGAGGGAGATGG+AGG | - | chr4_2:65438563-65438582 | Msa0615890:intron | 55.0% | |
| GATGGAGGGAGATGGAGGTA+TGG | - | chr4_2:65438568-65438587 | Msa0615890:intron | 55.0% | |
| TAAGGACCTCATGGCTGCAG+AGG | - | chr4_2:65439244-65439263 | Msa0615890:CDS | 55.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | - | chr4_2:65438142-65438161 | Msa0615890:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | + | chr4_2:65438467-65438486 | Msa0615880:intron | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | - | chr4_2:65438553-65438572 | Msa0615890:intron | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | - | chr4_2:65438554-65438573 | Msa0615890:intron | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | - | chr4_2:65438560-65438579 | Msa0615890:intron | 60.0% | |
| GAGTTGGGACCCTAGTGCTC+AGG | - | chr4_2:65438142-65438161 | Msa0615890:CDS | 60.0% | |
| CTAAGGGCCGGAAACTGTGC+AGG | + | chr4_2:65438467-65438486 | Msa0615880:intron | 60.0% | |
| TGGTGGAGGGGATGAGATGG+AGG | - | chr4_2:65438553-65438572 | Msa0615890:intron | 60.0% | |
| GGTGGAGGGGATGAGATGGA+GGG | - | chr4_2:65438554-65438573 | Msa0615890:intron | 60.0% | |
| GGGGATGAGATGGAGGGAGA+TGG | - | chr4_2:65438560-65438579 | Msa0615890:intron | 60.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | + | chr4_2:65438463-65438482 | Msa0615880:intron | 65.0% | |
| GGGCCGGAAACTGTGCAGGA+AGG | + | chr4_2:65438463-65438482 | Msa0615880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65437780 | 65439651 | 65437780 | ID=Msa0615890;Name=Msa0615890 |
| chr4_2 | mRNA | 65437780 | 65439651 | 65437780 | ID=Msa0615890-mRNA-1;Parent=Msa0615890;Name=Msa0615890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.5|0|1|1|1|3|0|484 |
| chr4_2 | exon | 65438695 | 65439651 | 65438695 | ID=Msa0615890-mRNA-1:exon:18581;Parent=Msa0615890-mRNA-1 |
| chr4_2 | exon | 65437979 | 65438374 | 65437979 | ID=Msa0615890-mRNA-1:exon:18580;Parent=Msa0615890-mRNA-1 |
| chr4_2 | exon | 65437780 | 65437881 | 65437780 | ID=Msa0615890-mRNA-1:exon:18579;Parent=Msa0615890-mRNA-1 |
| chr4_2 | CDS | 65438695 | 65439651 | 65438695 | ID=Msa0615890-mRNA-1:cds;Parent=Msa0615890-mRNA-1 |
| chr4_2 | CDS | 65437979 | 65438374 | 65437979 | ID=Msa0615890-mRNA-1:cds;Parent=Msa0615890-mRNA-1 |
| chr4_2 | CDS | 65437780 | 65437881 | 65437780 | ID=Msa0615890-mRNA-1:cds;Parent=Msa0615890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
