AlfalfaGEDB | Msa0616140

M. sativa cultivar zhongmu-4 / Msa0616140

KEGG: K22415
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
PFAM: PF15663.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616140	XP_039684449.1	96.907	679	21	0	1	679	1	679	0.0	1368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616140	sp\|Q9ZUM0\|C3H17_ARATH	39.936	626	285	27	3	596	5	571	2.39e-103	332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616140	A0A396GPF7	96.907	679	21	0	1	679	93	771	0.0	1368

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TFs/TRs:

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Gene ID	Type	Classification
Msa0616140	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0616140	Msa0655540	0.815680	8.167030e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616140	MtrunA17_Chr8g0375251	96.907	679	21	0	1	679	93	771	0.0	1368
Msa0616140	MtrunA17_Chr4g0063461	57.851	121	34	1	25	145	7	110	8.52e-43	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0616140	AT2G02160.1	39.936	626	285	27	3	596	5	571	2.43e-104	332

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Find 217 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGTTGGAGCTGGTGC+AGG	0.510993	4_2:+65841365	Msa0616140:CDS
AAATCAAGAGCAAGAATATA+TGG	0.412298	4_2:+65841646	Msa0616140:CDS
AAATTCTGATTACTATCATG+GGG	0.645440	4_2:+65840542	Msa0616140:CDS
AACACCTGCAACATTTGCTT+GGG	0.445165	4_2:-65840241	None:intergenic
AACCAATACCAACAATCTCT+AGG	0.593370	4_2:-65839720	None:intergenic
AACCAGCAGTCACCTAGAGA+GGG	0.636906	4_2:+65841028	Msa0616140:CDS
AACCCAGAAGAAGAGATCGA+TGG	0.631981	4_2:-65838529	None:intergenic
AACTCACGGTCAATCATCTG+AGG	0.657007	4_2:+65841514	Msa0616140:CDS
AACTTGGATTCTCAGTTCCT+TGG	0.435011	4_2:-65840167	None:intergenic
AAGAACAACACCAATCTTCT+TGG	0.345542	4_2:-65841693	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAATGATCAAAAAGAG+AGG	-	chr4_2:65839017-65839036	None:intergenic	30.0%
AGTTAACAAAAACAACTTCC+AGG	-	chr4_2:65839412-65839431	None:intergenic	30.0%
GTTCTCTTCTTTATTGAAAC+AGG	+	chr4_2:65839653-65839672	Msa0616140:intron	30.0%
AGTCAAAAGATAGGACAAAA+TGG	-	chr4_2:65839855-65839874	None:intergenic	30.0%
ATACAGACAAGTCAAAAGAT+AGG	-	chr4_2:65839864-65839883	None:intergenic	30.0%
TGTTTACTACCATTATAAGG+CGG	-	chr4_2:65840021-65840040	None:intergenic	30.0%
GCTTGTTTACTACCATTATA+AGG	-	chr4_2:65840024-65840043	None:intergenic	30.0%
CCAAAAGGTTTCTTAAAACT+TGG	-	chr4_2:65840186-65840205	None:intergenic	30.0%
TTGAAAAACATGCACAAGAA+AGG	+	chr4_2:65840211-65840230	Msa0616140:CDS	30.0%
GATGAATTTGGTAAAACAAG+AGG	+	chr4_2:65840567-65840586	Msa0616140:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	65838291	65842045	65838291	ID=Msa0616140;Name=Msa0616140
chr4_2	mRNA	65838291	65842045	65838291	ID=Msa0616140-mRNA-1;Parent=Msa0616140;Name=Msa0616140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=273\|1\|1\|1\|1\|1\|3\|324\|679
chr4_2	exon	65838291	65838689	65838291	ID=Msa0616140-mRNA-1:exon:18669;Parent=Msa0616140-mRNA-1
chr4_2	exon	65839675	65839785	65839675	ID=Msa0616140-mRNA-1:exon:18670;Parent=Msa0616140-mRNA-1
chr4_2	exon	65839919	65842045	65839919	ID=Msa0616140-mRNA-1:exon:18671;Parent=Msa0616140-mRNA-1
chr4_2	five_prime_UTR	65838291	65838563	65838291	ID=Msa0616140-mRNA-1:five_prime_utr;Parent=Msa0616140-mRNA-1
chr4_2	CDS	65838564	65838689	65838564	ID=Msa0616140-mRNA-1:cds;Parent=Msa0616140-mRNA-1
chr4_2	CDS	65839675	65839785	65839675	ID=Msa0616140-mRNA-1:cds;Parent=Msa0616140-mRNA-1
chr4_2	CDS	65839919	65841721	65839919	ID=Msa0616140-mRNA-1:cds;Parent=Msa0616140-mRNA-1
chr4_2	three_prime_UTR	65841722	65842045	65841722	ID=Msa0616140-mRNA-1:three_prime_utr;Parent=Msa0616140-mRNA-1

Gene Sequence

>Msa0616140

ATGGTTGCCCAACAGCCACAACTTCAGATTCAGACTCAGCAACCAACACCTTCTCCTCAAGATGAAGCCTTGAAAAGGAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAACGAATGTGAGTACCGCCATAGTGAGTATGCTAGAGTCAATCCTAGAGATTGTTGGTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGTCATCCGCCTCTTGACGGGTTGTTAGGAACACCACCGGCAACTGCTGCTGCTGCTGGACCATCTGTCCCCACGCCACAGATTGCGGCAACATCTGCAACCCATGCACCGCCTTATAATGGTAGTAAACAAGCCGTGCCTTGCATTTTCTTTCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCCTGCATGGACCAAACCCTACCAATGGCAGTAAAATAGCTACACAGGGGTCAATGACAATGACCAACCAAGGAACTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGCATTGAAAAACATGCACAAGAAAGGAAAACTTCCCAAGCAAATGTTGCAGGTGTTGAAGCTAAACCTGTCCAAAAATTTGAGACTGCTCCACAGAAAAATATGTTTAAGTTGGTGAAGCATGTACCGCCACCACCTGAAGGGTTAGATAATGAGGCTTCGCGATTTAAGACAACCAGTTCTCCACCGCCAACCAATGGGCCTAATGCCCGGTCTAATCGTGTGCATCAACCTCGTTTGCCAGATGATCACAATTTCCATAGTGGTAAGGACAATGACGAGTTTCTCAGAGAGTCGTCTCCTGGGTTTGATGTTCTTGTAGCTGACGAACTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAACAAGAGGTCAAGATGAAAGAGGCCCAGACTCTTTGAATGAATACGATGTAGGGCATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGTTGGGAACCTAGAAAGGGATCAGCCCAAATAGAAAGAAGGACTCATCACAGATCTCGTAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGAAACGGCTTAAAATCTGTCGTCGCTCATGATGAGGAGCAAAGTCATCGATTTTCTCGGAAGGATTCACACCAGTTGCCTTCAAATGAGAGATCCGTCAATAATCGTTTCCGAGGCAGAATAAATCTTCCACCAAATGGTGGTGACAGTCACCTAGAGAGGGACTTAGACAGAGGAAGAACCAGCAGTCACCTAGAGAGGGACTTGGACAGAGGAAGAATCAGTGGCCGGTTGTCATCTGGAAGGCTTCAATCGCCTCATGAGGGAAGGATCCAGGATAGATTAAGAGGAAGGTTGCCAGATGACGAGAGGAGAAACTTCAGCAGTCGATCGAATGAGGACCGAAGTGGGTTCTCTGCGCCAAAAAGTCTTGCTGAACTTAAGTATGGGAGGAACACTGAGAATAATGACCAACAATCATTTGGAAAGAGGAAAAGCTTCAGGGATCACCAACAATATGAAGATGATGTACCATTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCTGGTGCAGGCTCCTCCCACAGTAGCAAACATGATGACAATAAGAATGAAGGAATTACCGAAAACGGAACATTGTCAGAGAGCAAGGAAGAAGAGTCCAAGATTCAGGCTGCTGATGGAGTTGACAATACTGATGTAACTCACGGTCAATCATCTGAGGAAGGAATGATATACGATGAAGCTGCCGAAGATCAGGAGTATGAAGGTGAAGGAGACTATGAATATGAGCAAGGTGATGAGGAGTATGAGTATGAACAAGTTGAGGGTGAAAATCAAGAGCAAGAATATATGGAAGATGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA

Protein sequence

>Msa0616140

MVAQQPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAAAGPSVPTPQIAATSATHAPPYNGSKQAVPCIFFQKGFCLKGDRCAFLHGPNPTNGSKIATQGSMTMTNQGTENPSFKKPFGGIEKHAQERKTSQANVAGVEAKPVQKFETAPQKNMFKLVKHVPPPPEGLDNEASRFKTTSSPPPTNGPNARSNRVHQPRLPDDHNFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKTRGQDERGPDSLNEYDVGHSADYSLAADIDRDRFRVPQGYDSYDHMQEPYGWEPRKGSAQIERRTHHRSRSPDSVEVSDLRHRLSKRRKGNGLKSVVAHDEEQSHRFSRKDSHQLPSNERSVNNRFRGRINLPPNGGDSHLERDLDRGRTSSHLERDLDRGRISGRLSSGRLQSPHEGRIQDRLRGRLPDDERRNFSSRSNEDRSGFSAPKSLAELKYGRNTENNDQQSFGKRKSFRDHQQYEDDVPFEGPKPLSEILKEKKGVGAGAGSSHSSKHDDNKNEGITENGTLSESKEEESKIQAADGVDNTDVTHGQSSEEGMIYDEAAEDQEYEGEGDYEYEQGDEEYEYEQVEGENQEQEYMEDEDGDDFAKKIGVVLS*