AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655540 MtrunA17_Chr8g0375251 96.912 680 20 1 1 680 93 771 0.0 1365
Msa0655540 MtrunA17_Chr4g0063461 59.836 122 31 2 25 146 7 110 1.40e-42 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655540 AT2G02160.1 39.968 628 283 28 3 597 5 571 1.01e-104 333

Find 216 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAGTCCTTCTTTCTATT+TGG 0.122370 4_3:-64228906 None:intergenic
ATTTGGGCTGATCCCTTTCT+AGG 0.173898 4_3:-64228889 None:intergenic
GAGAGAGCCGCCACAGAAAT+TGG 0.190492 4_3:-64226609 None:intergenic
GATCCATCGATCTCTTCTTC+TGG 0.192710 4_3:+64226672 Msa0655540:five_prime_UTR
GAATGTGATGATGGGCTTTA+AGG 0.209581 4_3:-64226519 None:intergenic
AGAATTTCACTAAGAGGTTT+TGG 0.245906 4_3:-64229480 None:intergenic
TATTAACTCTCTAACGTTAC+AGG 0.259234 4_3:-64230102 None:intergenic
TATCATGGGGAAGATGAATT+TGG 0.267482 4_3:+64228703 Msa0655540:CDS
GCTTGTTTACTACCATTATA+AGG 0.280011 4_3:-64228169 None:intergenic
TTTCTCAGAGAGTCGTCTCC+TGG 0.281678 4_3:+64228637 Msa0655540:CDS
CCTCTTCTCAGATTGAGATT+TGG 0.282214 4_3:+64226650 Msa0655540:five_prime_UTR
AGTCTTGCTGAACTTAAGTA+TGG 0.284200 4_3:+64229363 Msa0655540:CDS
ATGAGTCCTTCTTTCTATTT+GGG 0.297001 4_3:-64228905 None:intergenic
TTCTCCCTTGACATGCAAAA+AGG 0.299512 4_3:+64226814 Msa0655540:CDS
TCCTCTTTCCAAATGATTGT+TGG 0.310747 4_3:-64229407 None:intergenic
ATCCATCGATCTCTTCTTCT+GGG 0.318828 4_3:+64226673 Msa0655540:five_prime_UTR
TTGGAAAGAGGAAAAGCTTC+AGG 0.319306 4_3:+64229418 Msa0655540:CDS
ATCGATCTCTTCTTCTGGGT+TGG 0.324812 4_3:+64226677 Msa0655540:five_prime_UTR
CAGCCTCTTGACGGGTTGTT+AGG 0.337201 4_3:+64228061 Msa0655540:intron
CAACACCTGCAACATTTGCT+TGG 0.342566 4_3:-64228390 None:intergenic
TTAAGCATGCAGGCCTCAAC+TGG 0.343280 4_3:+64229962 Msa0655540:three_prime_UTR
CCAAAAGGTTTCTTAAAACT+TGG 0.344005 4_3:-64228331 None:intergenic
TCGATCTCTTCTTCTGGGTT+GGG 0.344716 4_3:+64226678 Msa0655540:five_prime_UTR
AAGAACAACACCAATCTTCT+TGG 0.345542 4_3:-64229841 None:intergenic
ACCCATGCACCGCCTTATAA+TGG 0.352929 4_3:+64228157 Msa0655540:CDS
GGAAGAAGAGTCCAAGATTC+AGG 0.353435 4_3:+64229611 Msa0655540:CDS
GCCGTTTCCCTTCCTGCGCT+TGG 0.358186 4_3:-64228983 None:intergenic
ATCAGTGGCCGGTTGTCATC+TGG 0.358804 4_3:+64229216 Msa0655540:CDS
TCGTATTCATTCAAAGAGTC+TGG 0.359110 4_3:-64228754 None:intergenic
AGAAATTCTGATTACTATCA+TGG 0.361394 4_3:+64228688 Msa0655540:CDS
AGAGTAAGAGAATGTGATGA+TGG 0.369394 4_3:-64226528 None:intergenic
TTACTGCCATTGGTAGGGTT+TGG 0.386685 4_3:-64228259 None:intergenic
AATAATGACCAACAATCATT+TGG 0.389220 4_3:+64229399 Msa0655540:CDS
GCCTCATTATCTAACCCTTC+AGG 0.391125 4_3:-64228490 None:intergenic
CGTCATTGTCCTTACCACTA+TGG 0.395917 4_3:-64228612 None:intergenic
ATCTCTCATTTGAAGGCAAC+TGG 0.399075 4_3:-64229068 None:intergenic
TCCTTCAGAATTTCACTAAG+AGG 0.399426 4_3:-64229486 None:intergenic
ATCCTAGAGATTGTTGGTAT+TGG 0.401206 4_3:+64227863 Msa0655540:CDS
TTTCTAGGTTCCCAGCCATA+TGG 0.401770 4_3:-64228874 None:intergenic
ATCATATGAGTCATAACCTT+GGG 0.402504 4_3:-64228839 None:intergenic
TCCATCAGCAGCCTGAATCT+TGG 0.402576 4_3:-64229622 None:intergenic
CTATGGAAATTGTGATCATC+TGG 0.404436 4_3:-64228595 None:intergenic
AAGTTTCTCCTCTCGTCATC+TGG 0.405913 4_3:-64229294 None:intergenic
CGATGAAGCTGCCGAAGATC+AGG 0.408429 4_3:+64229698 Msa0655540:CDS
AAATCAAGAGCAAGAATATA+TGG 0.412298 4_3:+64229794 Msa0655540:CDS
GTACATCATCTTCATATTGT+TGG 0.423888 4_3:-64229446 None:intergenic
GCAGCAGCAGCAGTTGCCGG+TGG 0.424898 4_3:-64228088 None:intergenic
TTGACGGATCTCTCATTTGA+AGG 0.431022 4_3:-64229075 None:intergenic
TAAAACAAGTAAGCGTGGTT+TGG 0.434567 4_3:-64226496 None:intergenic
AGGATCCAGGATAGATTAAG+AGG 0.436261 4_3:+64229264 Msa0655540:CDS
ACTTCCCAAGCAAATGTTGC+AGG 0.436467 4_3:+64228385 Msa0655540:CDS
ATTGGTTGGCGGTGGAGAAC+TGG 0.437841 4_3:-64228530 None:intergenic
ACCTTCATACTCCTGATCTT+CGG 0.437886 4_3:-64229709 None:intergenic
GAAGATGATGTACCATTTGA+AGG 0.438650 4_3:+64229456 Msa0655540:CDS
GAATCTGAAGTTGTGGCTGT+TGG 0.444668 4_3:-64226718 None:intergenic
ACCTTCCTCTTAATCTATCC+TGG 0.445108 4_3:-64229269 None:intergenic
AACACCTGCAACATTTGCTT+GGG 0.445165 4_3:-64228389 None:intergenic
AGGTGACTGTCACCACCATT+TGG 0.450256 4_3:-64229129 None:intergenic
GAAATTCTGATTACTATCAT+GGG 0.451701 4_3:+64228689 Msa0655540:CDS
GTCCCTCTCTAGGTGACTGC+TGG 0.452700 4_3:-64229178 None:intergenic
ACACGATTAGACCGGGCATT+AGG 0.453044 4_3:-64228556 None:intergenic
GATTGTTGGTATTGGTTGAA+TGG 0.456384 4_3:+64227871 Msa0655540:CDS
ATCTGTGGCGTGGGGACAGA+TGG 0.457178 4_3:-64228118 None:intergenic
TAAGTTAAAGAGACAATATA+AGG 0.459796 4_3:-64229924 None:intergenic
ATATGGCTGGGAACCTAGAA+AGG 0.461958 4_3:+64228876 Msa0655540:CDS
CGGATGACGGAATGAACACT+TGG 0.466296 4_3:-64227908 None:intergenic
CTCAAGATGAAGCCTTGAAA+AGG 0.468804 4_3:+64226765 Msa0655540:CDS
AATATATGGAAGATGAAGAT+GGG 0.468862 4_3:+64229808 Msa0655540:CDS
AGAGAGCCGCCACAGAAATT+GGG 0.468937 4_3:-64226608 None:intergenic
AACTTGGATTCTCAGCTCCT+TGG 0.469416 4_3:-64228315 None:intergenic
AATCTGAAGTTGTGGCTGTT+GGG 0.469633 4_3:-64226717 None:intergenic
TGACTCTAGCATACTCACTA+TGG 0.470886 4_3:-64227840 None:intergenic
AGTTCTCCACCGCCAACCAA+TGG 0.471253 4_3:+64228532 Msa0655540:CDS
TCTGAGACCTCAACACTGTC+AGG 0.480290 4_3:-64228943 None:intergenic
GCATTAGGCCCATTGGTTGG+CGG 0.480720 4_3:-64228541 None:intergenic
AGAATAAATCTTCCACCAAA+TGG 0.481461 4_3:+64229114 Msa0655540:CDS
AATGAAGGAATTACCGAAAA+CGG 0.483376 4_3:+64229570 Msa0655540:CDS
GATGACTTTGCCAAGAAGAT+TGG 0.484215 4_3:+64229831 Msa0655540:CDS
GCCTCATGAGGGAAGGATCC+AGG 0.484648 4_3:+64229251 Msa0655540:CDS
TACCATTATAAGGCGGTGCA+TGG 0.485504 4_3:-64228159 None:intergenic
CAACCAATGGGCCTAATGCC+CGG 0.485721 4_3:+64228545 Msa0655540:CDS
GTTCTCCACCGCCAACCAAT+GGG 0.486313 4_3:+64228533 Msa0655540:CDS
TTAGGCCCATTGGTTGGCGG+TGG 0.486496 4_3:-64228538 None:intergenic
TTCTCAGAGAGTCGTCTCCT+GGG 0.488365 4_3:+64228638 Msa0655540:CDS
GAAATTCTGAAGGAGAAGAA+AGG 0.491627 4_3:+64229495 Msa0655540:CDS
TCCAAGCGCAGGAAGGGAAA+CGG 0.492405 4_3:+64228982 Msa0655540:CDS
GAATATATGGAAGATGAAGA+TGG 0.492589 4_3:+64229807 Msa0655540:CDS
GCCTCGGAAACGATTATTGA+CGG 0.493252 4_3:-64229091 None:intergenic
CAAGTGTTCATTCCGTCATC+CGG 0.493411 4_3:+64227909 Msa0655540:CDS
TTTACATGCAGCCTCTTGAC+GGG 0.494749 4_3:+64228053 Msa0655540:intron
GTCATCATGTTTGCTACTGT+GGG 0.496484 4_3:-64229541 None:intergenic
TGGATTCTCAGCTCCTTGGT+TGG 0.496891 4_3:-64228311 None:intergenic
TGGTAGGGTTTGGTCCATGC+AGG 0.497954 4_3:-64228249 None:intergenic
TCCAAGATTCAGGCTGCTGA+TGG 0.498699 4_3:+64229621 Msa0655540:CDS
GAAGCCTTCCAGATGACAAC+CGG 0.499100 4_3:-64229224 None:intergenic
CTGGGTTGGGTTGTTCGCCA+TGG 0.501508 4_3:+64226691 Msa0655540:exon
TTATCTAACCCTTCAGGTGG+TGG 0.501541 4_3:-64228484 None:intergenic
AAGGCTTCATCTTGAGGAGA+AGG 0.502963 4_3:-64226758 None:intergenic
TCATCTTGAGGAGAAGGTGT+TGG 0.504643 4_3:-64226752 None:intergenic
TGGAAAGAGGAAAAGCTTCA+GGG 0.504669 4_3:+64229419 Msa0655540:CDS
CTGAAGGAGAAGAAAGGAGT+TGG 0.505461 4_3:+64229501 Msa0655540:CDS
GTATGAGTATGAACAAGTTG+AGG 0.507239 4_3:+64229767 Msa0655540:CDS
GAGAAGAGGAGAAGAAGTAG+AGG 0.508002 4_3:-64226636 None:intergenic
TCTTTGAATGAATACGATGT+AGG 0.510886 4_3:+64228760 Msa0655540:CDS
AAAGGAGTTGGAGCTGGTGC+AGG 0.510993 4_3:+64229513 Msa0655540:CDS
CATGATGACAATAAGAATGA+AGG 0.513449 4_3:+64229555 Msa0655540:CDS
GAGTAAGAGAATGTGATGAT+GGG 0.516605 4_3:-64226527 None:intergenic
AGACCGGGCATTAGGCCCAT+TGG 0.518925 4_3:-64228548 None:intergenic
ACCAACAATCATTTGGAAAG+AGG 0.519008 4_3:+64229406 Msa0655540:CDS
TGTCATCATGTTTGCTACTG+TGG 0.520700 4_3:-64229542 None:intergenic
CTTTGAATGAATACGATGTA+GGG 0.521877 4_3:+64228761 Msa0655540:CDS
CGGAACATTGTCAGAGAGCA+AGG 0.523049 4_3:+64229590 Msa0655540:CDS
GATCACATGCAAGAGCCATA+TGG 0.523697 4_3:+64228859 Msa0655540:CDS
GAGTCAATCCTAGAGATTGT+TGG 0.524919 4_3:+64227857 Msa0655540:CDS
TATGAGTATGAACAAGTTGA+GGG 0.525313 4_3:+64229768 Msa0655540:CDS
GTTGCCGCAATCTGTGGCGT+GGG 0.527866 4_3:-64228127 None:intergenic
ACCTGAAGGGTTAGATAATG+AGG 0.533549 4_3:+64228489 Msa0655540:CDS
ACATGCAAGAGCCATATGGC+TGG 0.534478 4_3:+64228863 Msa0655540:CDS
GTGGAAGATTTATTCTGCCT+CGG 0.535587 4_3:-64229107 None:intergenic
GCTTCCATCATATCAACTAA+AGG 0.541333 4_3:-64230152 None:intergenic
GAGAAGAAAGGAGTTGGAGC+TGG 0.544404 4_3:+64229507 Msa0655540:CDS
CTCTGTCCAAGTCCCTCTCT+AGG 0.544981 4_3:-64229188 None:intergenic
CGTTTATCCAAGCGCAGGAA+GGG 0.547030 4_3:+64228976 Msa0655540:CDS
ACCATTATAAGGCGGTGCAT+GGG 0.548023 4_3:-64228158 None:intergenic
GATGATCACAATTTCCATAG+TGG 0.554285 4_3:+64228598 Msa0655540:CDS
TGGCAGTAAAATAGCTACAC+AGG 0.556312 4_3:+64228273 Msa0655540:CDS
ACCTCTTAGTGAAATTCTGA+AGG 0.557787 4_3:+64229485 Msa0655540:CDS
AGCAAGAAAGTAGACACAAT+CGG 0.559051 4_3:-64226792 None:intergenic
GATCGAATGAGGACCGAAGT+GGG 0.559665 4_3:+64229325 Msa0655540:CDS
TCCAGGATAGATTAAGAGGA+AGG 0.562641 4_3:+64229268 Msa0655540:CDS
CGGGCATTAGGCCCATTGGT+TGG 0.564557 4_3:-64228544 None:intergenic
CTCTGTCTAAGTCCCTCTCT+AGG 0.564616 4_3:-64229149 None:intergenic
TCCTGGATCCTTCCCTCATG+AGG 0.568928 4_3:-64229252 None:intergenic
GAACCAGCAGTCACCTAGAG+AGG 0.569215 4_3:+64229175 Msa0655540:CDS
TGTCCCCACGCCACAGATTG+CGG 0.569632 4_3:+64228123 Msa0655540:CDS
TGACTGTCACCACCATTTGG+TGG 0.569677 4_3:-64229126 None:intergenic
CGTATTCATTCAAAGAGTCT+GGG 0.569875 4_3:-64228753 None:intergenic
GACAGATGTGCCTTCCTGCA+TGG 0.570126 4_3:+64228235 Msa0655540:CDS
CCAAATCTCAATCTGAGAAG+AGG 0.573248 4_3:-64226650 None:intergenic
TTGAAAGAAAATGCAAGGCA+CGG 0.577753 4_3:-64228191 None:intergenic
CTTCAGCAGTCGATCGAATG+AGG 0.577765 4_3:+64229314 Msa0655540:CDS
TGTTGCCGCAATCTGTGGCG+TGG 0.581148 4_3:-64228128 None:intergenic
GACAGATATTACCCCAGTTG+AGG 0.582522 4_3:-64229975 None:intergenic
GCAGATGTTGCCGCAATCTG+TGG 0.582954 4_3:-64228133 None:intergenic
TCGTTTATCCAAGCGCAGGA+AGG 0.583309 4_3:+64228975 Msa0655540:CDS
GATCAGCCCAAATAGAAAGA+AGG 0.583430 4_3:+64228899 Msa0655540:CDS
GATGAATTTGGTAAAACAAG+AGG 0.583764 4_3:+64228715 Msa0655540:CDS
CATGTACCGCCACCACCTGA+AGG 0.584923 4_3:+64228475 Msa0655540:CDS
TCACAATTTCCATAGTGGTA+AGG 0.586818 4_3:+64228603 Msa0655540:CDS
TTGTGGCTGTTGGGCAACCA+TGG 0.587839 4_3:-64226708 None:intergenic
TCGTAGTCCTGACAGTGTTG+AGG 0.587874 4_3:+64228936 Msa0655540:CDS
GTTGATGCACACGATTAGAC+CGG 0.589529 4_3:-64228564 None:intergenic
TAAGCATGCAGGCCTCAACT+GGG 0.590264 4_3:+64229963 Msa0655540:three_prime_UTR
TTCAATCGCCTCATGAGGGA+AGG 0.590666 4_3:+64229244 Msa0655540:CDS
GATCATATGAGTCATAACCT+TGG 0.590754 4_3:-64228840 None:intergenic
CAGTCACCTAGAGAGGGACT+TGG 0.591478 4_3:+64229182 Msa0655540:CDS
TCTAACCCTTCAGGTGGTGG+CGG 0.591953 4_3:-64228481 None:intergenic
AAGGCTTCAATCGCCTCATG+AGG 0.592807 4_3:+64229239 Msa0655540:CDS
ATCTGTCGTCGCTCATGATG+AGG 0.592954 4_3:+64229011 Msa0655540:CDS
AACCAATACCAACAATCTCT+AGG 0.593370 4_3:-64227865 None:intergenic
CGATCGAATGAGGACCGAAG+TGG 0.593485 4_3:+64229324 Msa0655540:CDS
GACATCGTTTATCCAAGCGC+AGG 0.594290 4_3:+64228971 Msa0655540:CDS
GTCTTGCTGAACTTAAGTAT+GGG 0.596178 4_3:+64229364 Msa0655540:CDS
GATCAGGAGTATGAAGGTGA+AGG 0.597456 4_3:+64229714 Msa0655540:CDS
GCCGAAGATCAGGAGTATGA+AGG 0.599647 4_3:+64229708 Msa0655540:CDS
TCTCTACCCAATTTCTGTGG+CGG 0.599837 4_3:+64226602 Msa0655540:five_prime_UTR
CATGCAAGAGCCATATGGCT+GGG 0.599944 4_3:+64228864 Msa0655540:CDS
CACGGTCAATCATCTGAGGA+AGG 0.602447 4_3:+64229666 Msa0655540:CDS
TAAAGAAACTCACCGGATGA+CGG 0.603837 4_3:-64227921 None:intergenic
CTAGAGAGGGACTTGGACAG+AGG 0.604960 4_3:+64229189 Msa0655540:CDS
CGGGTTGTTAGGAACACCAC+CGG 0.605352 4_3:+64228072 Msa0655540:CDS
TGAATATGAGCAAGGTGATG+AGG 0.606447 4_3:+64229743 Msa0655540:CDS
GTTCCTAACAACCCGTCAAG+AGG 0.607813 4_3:-64228064 None:intergenic
TATGGCTGGGAACCTAGAAA+GGG 0.609578 4_3:+64228877 Msa0655540:CDS
ATCATGTTTGCTACTGTGGG+AGG 0.610033 4_3:-64229538 None:intergenic
GATAGATTTCGTGTGCCCCA+AGG 0.610131 4_3:+64228823 Msa0655540:CDS
ACAAGAGGTCAAGATGAAAG+AGG 0.612476 4_3:+64228730 Msa0655540:CDS
ATATATGGAAGATGAAGATG+GGG 0.612975 4_3:+64229809 Msa0655540:CDS
CTCTCTCTACCCAATTTCTG+TGG 0.614772 4_3:+64226599 Msa0655540:five_prime_UTR
GACAATACTGATGTAACTCA+CGG 0.620169 4_3:+64229648 Msa0655540:CDS
TTGCTGAACTTAAGTATGGG+AGG 0.621411 4_3:+64229367 Msa0655540:CDS
GTGGTGACAGTCACCTAGAG+AGG 0.623462 4_3:+64229136 Msa0655540:CDS
ACAGAGGAAGAATCAGTGGC+CGG 0.626828 4_3:+64229205 Msa0655540:CDS
TTGTGATCATCTGGCAAACG+AGG 0.626895 4_3:-64228586 None:intergenic
TCCGTCAATAATCGTTTCCG+AGG 0.626973 4_3:+64229090 Msa0655540:CDS
TTGGCGCAGAGAACCCACTT+CGG 0.629325 4_3:-64229338 None:intergenic
GGCAGTAAAATAGCTACACA+GGG 0.630874 4_3:+64228274 Msa0655540:CDS
AGGGTTTGGTCCATGCAGGA+AGG 0.631683 4_3:-64228245 None:intergenic
AACCCAGAAGAAGAGATCGA+TGG 0.631981 4_3:-64226675 None:intergenic
ATGTACCGCCACCACCTGAA+GGG 0.632419 4_3:+64228476 Msa0655540:CDS
AACCAGCAGTCACCTAGAGA+GGG 0.636906 4_3:+64229176 Msa0655540:CDS
TAAGGTAAAACAAGTAAGCG+TGG 0.639199 4_3:-64226501 None:intergenic
GAAGGTTGCCAGATGACGAG+AGG 0.639411 4_3:+64229286 Msa0655540:CDS
CTAGAGAGGGACTTAGACAG+AGG 0.639929 4_3:+64229150 Msa0655540:CDS
GGATGACGGAATGAACACTT+GGG 0.640470 4_3:-64227907 None:intergenic
AGGCTTCAATCGCCTCATGA+GGG 0.642774 4_3:+64229240 Msa0655540:CDS
AAATTCTGATTACTATCATG+GGG 0.645440 4_3:+64228690 Msa0655540:CDS
TTGCCGCAATCTGTGGCGTG+GGG 0.646254 4_3:-64228126 None:intergenic
GTGGCCGGTTGTCATCTGGA+AGG 0.646666 4_3:+64229220 Msa0655540:CDS
CATGGACCAAACCCTACCAA+TGG 0.648418 4_3:+64228253 Msa0655540:CDS
ATAAATCTTCCACCAAATGG+TGG 0.648459 4_3:+64229117 Msa0655540:CDS
TTGGACAGAGGAAGAATCAG+TGG 0.649407 4_3:+64229201 Msa0655540:CDS
GGAGACTATGAATATGAGCA+AGG 0.650461 4_3:+64229735 Msa0655540:CDS
TTGATGCACACGATTAGACC+GGG 0.654044 4_3:-64228563 None:intergenic
TGCGCTTGGATAAACGATGT+CGG 0.656360 4_3:-64228969 None:intergenic
AACTCACGGTCAATCATCTG+AGG 0.657007 4_3:+64229662 Msa0655540:CDS
TCAATGACAATGACCAACCA+AGG 0.673022 4_3:+64228298 Msa0655540:CDS
TGAGTCTGAATCTGAAGTTG+TGG 0.677604 4_3:-64226725 None:intergenic
TGGTGACAGTCACCTAGAGA+GGG 0.684816 4_3:+64229137 Msa0655540:CDS
TGTTTACTACCATTATAAGG+CGG 0.686484 4_3:-64228166 None:intergenic
TCATTATCTAACCCTTCAGG+TGG 0.688573 4_3:-64228487 None:intergenic
AAGCATGCAGGCCTCAACTG+GGG 0.704027 4_3:+64229964 Msa0655540:three_prime_UTR
TCATATGAGTCATAACCTTG+GGG 0.704228 4_3:-64228838 None:intergenic
CTCTAGCATACTCACTATGG+CGG 0.707134 4_3:-64227837 None:intergenic
GCTACAAGAACATCAAACCC+AGG 0.714968 4_3:-64228655 None:intergenic
GCAGTAAAATAGCTACACAG+GGG 0.802739 4_3:+64228275 Msa0655540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTAATAATAATA+GGG - chr4_3:64227467-64227486 None:intergenic 0.0%
!! ATAATTGATAAAGAAAAAAA+GGG - chr4_3:64226871-64226890 None:intergenic 10.0%
!! TATAATTGATAAAGAAAAAA+AGG - chr4_3:64226872-64226891 None:intergenic 10.0%
!!! TTTATCAATTATATCTTTTA+GGG + chr4_3:64226879-64226898 Msa0655540:intron 10.0%
!!! AAATTTAATTTTGATTAATG+GGG + chr4_3:64226961-64226980 Msa0655540:intron 10.0%
!!! CTTTATCAATTATATCTTTT+AGG + chr4_3:64226878-64226897 Msa0655540:intron 15.0%
!! CATAACTCAATTAAAATAAA+AGG - chr4_3:64227965-64227984 None:intergenic 15.0%
!!! TTGTTCTTTCATAATTTTTA+TGG + chr4_3:64229856-64229875 Msa0655540:exon 15.0%
!!! TTTCAGATTCGAATTATTTT+TGG + chr4_3:64226902-64226921 Msa0655540:intron 20.0%
!!! TCTACAATTCAACAATTTTA+GGG - chr4_3:64227023-64227042 None:intergenic 20.0%
!!! ATCTACAATTCAACAATTTT+AGG - chr4_3:64227024-64227043 None:intergenic 20.0%
!! AATACTCTAAACTTAATGAA+AGG - chr4_3:64227376-64227395 None:intergenic 20.0%
!! CATCTGTTATTAAGAATATA+AGG + chr4_3:64227715-64227734 Msa0655540:intron 20.0%
!!! AACTTAAACATATTTTTCTG+TGG - chr4_3:64228448-64228467 None:intergenic 20.0%
!! ACAGAAAAATATGTTTAAGT+TGG + chr4_3:64228447-64228466 Msa0655540:CDS 20.0%
!! TAAGTTAAAGAGACAATATA+AGG - chr4_3:64229927-64229946 None:intergenic 20.0%
!!! TGATATTTTTATGTAAGAAG+TGG + chr4_3:64230046-64230065 Msa0655540:three_prime_UTR 20.0%
!!! GATATTTTTATGTAAGAAGT+GGG + chr4_3:64230047-64230066 Msa0655540:three_prime_UTR 20.0%
!!! ATATTTTTATGTAAGAAGTG+GGG + chr4_3:64230048-64230067 Msa0655540:three_prime_UTR 20.0%
!!! AAAAAGGGCTTTTTAGAAAA+AGG - chr4_3:64226856-64226875 None:intergenic 25.0%
!!! TAATTTTGATTAATGGGGTT+TGG + chr4_3:64226966-64226985 Msa0655540:intron 25.0%
! ACAAAAAAATCTTCATGGAT+GGG - chr4_3:64227049-64227068 None:intergenic 25.0%
! AACAAAAAAATCTTCATGGA+TGG - chr4_3:64227050-64227069 None:intergenic 25.0%
! GTCTAACAAAAAAATCTTCA+TGG - chr4_3:64227054-64227073 None:intergenic 25.0%
!!! GTTAGACTGTGAATTTTTTA+TGG + chr4_3:64227067-64227086 Msa0655540:intron 25.0%
!!! TGATCATCTTGTTATTTGAT+TGG + chr4_3:64227117-64227136 Msa0655540:intron 25.0%
! AATAAGCTATTTATCCAAAC+AGG + chr4_3:64227440-64227459 Msa0655540:intron 25.0%
! ATAAGCTATTTATCCAAACA+GGG + chr4_3:64227441-64227460 Msa0655540:intron 25.0%
! AGTATTTGAGTCTTGATTAT+AGG + chr4_3:64227499-64227518 Msa0655540:intron 25.0%
! TTCTCTTCTTTATTGAAACA+GGG + chr4_3:64227799-64227818 Msa0655540:intron 25.0%
! AGAAATTCTGATTACTATCA+TGG + chr4_3:64228688-64228707 Msa0655540:CDS 25.0%
! GAAATTCTGATTACTATCAT+GGG + chr4_3:64228689-64228708 Msa0655540:CDS 25.0%
! AAATTCTGATTACTATCATG+GGG + chr4_3:64228690-64228709 Msa0655540:CDS 25.0%
! AATAATGACCAACAATCATT+TGG + chr4_3:64229399-64229418 Msa0655540:CDS 25.0%
! AAATCAAGAGCAAGAATATA+TGG + chr4_3:64229794-64229813 Msa0655540:CDS 25.0%
! AATATATGGAAGATGAAGAT+GGG + chr4_3:64229808-64229827 Msa0655540:CDS 25.0%
!!! TTTTCCTTTAGTTGATATGA+TGG + chr4_3:64230148-64230167 Msa0655540:three_prime_UTR 25.0%
!! TTTTTATGGATTGCGTTTCT+TGG + chr4_3:64227081-64227100 Msa0655540:intron 30.0%
AAAGGAATGATCAAAAAGAG+AGG - chr4_3:64227163-64227182 None:intergenic 30.0%
! TCCTTTTGTATTTAACAGAG+TGG + chr4_3:64227177-64227196 Msa0655540:intron 30.0%
! CCTTTTGTATTTAACAGAGT+GGG + chr4_3:64227178-64227197 Msa0655540:intron 30.0%
AGTTAACAAAAACAACTTCC+AGG - chr4_3:64227558-64227577 None:intergenic 30.0%
!!! ACATGCTGCTTTTATTTTTG+TGG + chr4_3:64227644-64227663 Msa0655540:intron 30.0%
GTTCTCTTCTTTATTGAAAC+AGG + chr4_3:64227798-64227817 Msa0655540:intron 30.0%
AGTCAAAAGATAGGACAAAA+TGG - chr4_3:64228000-64228019 None:intergenic 30.0%
ATACAGACAAGTCAAAAGAT+AGG - chr4_3:64228009-64228028 None:intergenic 30.0%
!!! TATCTTTTGACTTGTCTGTA+TGG + chr4_3:64228008-64228027 Msa0655540:intron 30.0%
TGTTTACTACCATTATAAGG+CGG - chr4_3:64228169-64228188 None:intergenic 30.0%
GCTTGTTTACTACCATTATA+AGG - chr4_3:64228172-64228191 None:intergenic 30.0%
! CCTTGCATTTTCTTTCAAAA+GGG + chr4_3:64228196-64228215 Msa0655540:CDS 30.0%
! CTTGCATTTTCTTTCAAAAG+GGG + chr4_3:64228197-64228216 Msa0655540:CDS 30.0%
CCAAAAGGTTTCTTAAAACT+TGG - chr4_3:64228334-64228353 None:intergenic 30.0%
!!! CCAAGTTTTAAGAAACCTTT+TGG + chr4_3:64228331-64228350 Msa0655540:CDS 30.0%
!!! AGTTTTAAGAAACCTTTTGG+CGG + chr4_3:64228334-64228353 Msa0655540:CDS 30.0%
TTGAAAAACATGCACAAGAA+AGG + chr4_3:64228359-64228378 Msa0655540:CDS 30.0%
GATGAATTTGGTAAAACAAG+AGG + chr4_3:64228715-64228734 Msa0655540:CDS 30.0%
TCTTTGAATGAATACGATGT+AGG + chr4_3:64228760-64228779 Msa0655540:CDS 30.0%
CTTTGAATGAATACGATGTA+GGG + chr4_3:64228761-64228780 Msa0655540:CDS 30.0%
ATCATATGAGTCATAACCTT+GGG - chr4_3:64228842-64228861 None:intergenic 30.0%
ATGAGTCCTTCTTTCTATTT+GGG - chr4_3:64228908-64228927 None:intergenic 30.0%
AGAATAAATCTTCCACCAAA+TGG + chr4_3:64229114-64229133 Msa0655540:CDS 30.0%
! TTAAGTTCAGCAAGACTTTT+TGG - chr4_3:64229360-64229379 None:intergenic 30.0%
GTACATCATCTTCATATTGT+TGG - chr4_3:64229449-64229468 None:intergenic 30.0%
! AGAATTTCACTAAGAGGTTT+TGG - chr4_3:64229483-64229502 None:intergenic 30.0%
CATGATGACAATAAGAATGA+AGG + chr4_3:64229555-64229574 Msa0655540:CDS 30.0%
AATGAAGGAATTACCGAAAA+CGG + chr4_3:64229570-64229589 Msa0655540:CDS 30.0%
! TATGAGTATGAACAAGTTGA+GGG + chr4_3:64229768-64229787 Msa0655540:CDS 30.0%
GAATATATGGAAGATGAAGA+TGG + chr4_3:64229807-64229826 Msa0655540:CDS 30.0%
ATATATGGAAGATGAAGATG+GGG + chr4_3:64229809-64229828 Msa0655540:CDS 30.0%
TATTAACTCTCTAACGTTAC+AGG - chr4_3:64230105-64230124 None:intergenic 30.0%
TAAAACAAGTAAGCGTGGTT+TGG - chr4_3:64226499-64226518 None:intergenic 35.0%
TAAGGTAAAACAAGTAAGCG+TGG - chr4_3:64226504-64226523 None:intergenic 35.0%
GAGTAAGAGAATGTGATGAT+GGG - chr4_3:64226530-64226549 None:intergenic 35.0%
AGAGTAAGAGAATGTGATGA+TGG - chr4_3:64226531-64226550 None:intergenic 35.0%
AGCAAGAAAGTAGACACAAT+CGG - chr4_3:64226795-64226814 None:intergenic 35.0%
! AGAACCTTTTTGCATGTCAA+GGG - chr4_3:64226821-64226840 None:intergenic 35.0%
! AAGAACCTTTTTGCATGTCA+AGG - chr4_3:64226822-64226841 None:intergenic 35.0%
CCCACTCTGTTAAATACAAA+AGG - chr4_3:64227181-64227200 None:intergenic 35.0%
GTGAAGGAAATTAGGATGAA+CGG + chr4_3:64227200-64227219 Msa0655540:intron 35.0%
TGAAGGAAATTAGGATGAAC+GGG + chr4_3:64227201-64227220 Msa0655540:intron 35.0%
GAACCCTAATTGTGATTGTT+AGG + chr4_3:64227230-64227249 Msa0655540:intron 35.0%
GGTCCTAACAATCACAATTA+GGG - chr4_3:64227236-64227255 None:intergenic 35.0%
TGGTCCTAACAATCACAATT+AGG - chr4_3:64227237-64227256 None:intergenic 35.0%
CATGTGTATACTGTAGTGAA+TGG + chr4_3:64227350-64227369 Msa0655540:intron 35.0%
AATAATAATAGGGCCCTGTT+TGG - chr4_3:64227457-64227476 None:intergenic 35.0%
CAAGAAAACACAACTGCTAA+AGG - chr4_3:64227529-64227548 None:intergenic 35.0%
! TGTGTTTTCTTGAGTAATCC+TGG + chr4_3:64227537-64227556 Msa0655540:intron 35.0%
ATCCTAGAGATTGTTGGTAT+TGG + chr4_3:64227863-64227882 Msa0655540:CDS 35.0%
AACCAATACCAACAATCTCT+AGG - chr4_3:64227868-64227887 None:intergenic 35.0%
!! GATTGTTGGTATTGGTTGAA+TGG + chr4_3:64227871-64227890 Msa0655540:CDS 35.0%
TTGAAAGAAAATGCAAGGCA+CGG - chr4_3:64228194-64228213 None:intergenic 35.0%
! GCCTTGCATTTTCTTTCAAA+AGG + chr4_3:64228195-64228214 Msa0655540:CDS 35.0%
!! CCCTTTTGAAAGAAAATGCA+AGG - chr4_3:64228199-64228218 None:intergenic 35.0%
! CAAAAGGGGTTTTGCTTAAA+AGG + chr4_3:64228211-64228230 Msa0655540:CDS 35.0%
! CTATTTTACTGCCATTGGTA+GGG - chr4_3:64228267-64228286 None:intergenic 35.0%
!! TGTAGCTATTTTACTGCCAT+TGG - chr4_3:64228272-64228291 None:intergenic 35.0%
CTATGGAAATTGTGATCATC+TGG - chr4_3:64228598-64228617 None:intergenic 35.0%
GATGATCACAATTTCCATAG+TGG + chr4_3:64228598-64228617 Msa0655540:CDS 35.0%
TCACAATTTCCATAGTGGTA+AGG + chr4_3:64228603-64228622 Msa0655540:CDS 35.0%
TATCATGGGGAAGATGAATT+TGG + chr4_3:64228703-64228722 Msa0655540:CDS 35.0%
CGTATTCATTCAAAGAGTCT+GGG - chr4_3:64228756-64228775 None:intergenic 35.0%
TCGTATTCATTCAAAGAGTC+TGG - chr4_3:64228757-64228776 None:intergenic 35.0%
TCATATGAGTCATAACCTTG+GGG - chr4_3:64228841-64228860 None:intergenic 35.0%
GATCATATGAGTCATAACCT+TGG - chr4_3:64228843-64228862 None:intergenic 35.0%
GATGAGTCCTTCTTTCTATT+TGG - chr4_3:64228909-64228928 None:intergenic 35.0%
!!! AGCAAAGTCATCGATTTTCT+CGG + chr4_3:64229034-64229053 Msa0655540:CDS 35.0%
ATAAATCTTCCACCAAATGG+TGG + chr4_3:64229117-64229136 Msa0655540:CDS 35.0%
AGTCTTGCTGAACTTAAGTA+TGG + chr4_3:64229363-64229382 Msa0655540:CDS 35.0%
GTCTTGCTGAACTTAAGTAT+GGG + chr4_3:64229364-64229383 Msa0655540:CDS 35.0%
ACCAACAATCATTTGGAAAG+AGG + chr4_3:64229406-64229425 Msa0655540:CDS 35.0%
TCCTCTTTCCAAATGATTGT+TGG - chr4_3:64229410-64229429 None:intergenic 35.0%
GAAGATGATGTACCATTTGA+AGG + chr4_3:64229456-64229475 Msa0655540:CDS 35.0%
ACCTCTTAGTGAAATTCTGA+AGG + chr4_3:64229485-64229504 Msa0655540:CDS 35.0%
TCCTTCAGAATTTCACTAAG+AGG - chr4_3:64229489-64229508 None:intergenic 35.0%
! GAAATTCTGAAGGAGAAGAA+AGG + chr4_3:64229495-64229514 Msa0655540:CDS 35.0%
GACAATACTGATGTAACTCA+CGG + chr4_3:64229648-64229667 Msa0655540:CDS 35.0%
GTATGAGTATGAACAAGTTG+AGG + chr4_3:64229767-64229786 Msa0655540:CDS 35.0%
AAGAACAACACCAATCTTCT+TGG - chr4_3:64229844-64229863 None:intergenic 35.0%
!!! TTTTTTCTGCTTAAGCATGC+AGG + chr4_3:64229952-64229971 Msa0655540:three_prime_UTR 35.0%
GCTTCCATCATATCAACTAA+AGG - chr4_3:64230155-64230174 None:intergenic 35.0%
!! GAATGTGATGATGGGCTTTA+AGG - chr4_3:64226522-64226541 None:intergenic 40.0%
CCAAATCTCAATCTGAGAAG+AGG - chr4_3:64226653-64226672 None:intergenic 40.0%
CCTCTTCTCAGATTGAGATT+TGG + chr4_3:64226650-64226669 Msa0655540:five_prime_UTR 40.0%
ATCCATCGATCTCTTCTTCT+GGG + chr4_3:64226673-64226692 Msa0655540:five_prime_UTR 40.0%
! AATCTGAAGTTGTGGCTGTT+GGG - chr4_3:64226720-64226739 None:intergenic 40.0%
! TGAGTCTGAATCTGAAGTTG+TGG - chr4_3:64226728-64226747 None:intergenic 40.0%
!! CTTTTCAAGGCTTCATCTTG+AGG - chr4_3:64226767-64226786 None:intergenic 40.0%
CTCAAGATGAAGCCTTGAAA+AGG + chr4_3:64226765-64226784 Msa0655540:CDS 40.0%
!! ACAATCGGTGTTCCTTTTCA+AGG - chr4_3:64226780-64226799 None:intergenic 40.0%
TTCTCCCTTGACATGCAAAA+AGG + chr4_3:64226814-64226833 Msa0655540:CDS 40.0%
GTATTTAACAGAGTGGGTGA+AGG + chr4_3:64227184-64227203 Msa0655540:intron 40.0%
GAAGGAAATTAGGATGAACG+GGG + chr4_3:64227202-64227221 Msa0655540:intron 40.0%
! GACATCAGCTTACACTTTTG+TGG - chr4_3:64227305-64227324 None:intergenic 40.0%
GCTGATGTCAATTGAGCATT+TGG + chr4_3:64227316-64227335 Msa0655540:intron 40.0%
TGACTCTAGCATACTCACTA+TGG - chr4_3:64227843-64227862 None:intergenic 40.0%
GAGTCAATCCTAGAGATTGT+TGG + chr4_3:64227857-64227876 Msa0655540:CDS 40.0%
TAAAGAAACTCACCGGATGA+CGG - chr4_3:64227924-64227943 None:intergenic 40.0%
! TTTTACATGCAGCCTCTTGA+CGG + chr4_3:64228052-64228071 Msa0655540:intron 40.0%
!! GCTATTTTACTGCCATTGGT+AGG - chr4_3:64228268-64228287 None:intergenic 40.0%
TGGCAGTAAAATAGCTACAC+AGG + chr4_3:64228273-64228292 Msa0655540:CDS 40.0%
GGCAGTAAAATAGCTACACA+GGG + chr4_3:64228274-64228293 Msa0655540:CDS 40.0%
GCAGTAAAATAGCTACACAG+GGG + chr4_3:64228275-64228294 Msa0655540:CDS 40.0%
TCAATGACAATGACCAACCA+AGG + chr4_3:64228298-64228317 Msa0655540:CDS 40.0%
!! TGTTTTTCAATGCCGCCAAA+AGG - chr4_3:64228349-64228368 None:intergenic 40.0%
AACACCTGCAACATTTGCTT+GGG - chr4_3:64228392-64228411 None:intergenic 40.0%
!! GCAGTCTCAAATTTTTGGAC+AGG - chr4_3:64228424-64228443 None:intergenic 40.0%
! GTGGAGCAGTCTCAAATTTT+TGG - chr4_3:64228429-64228448 None:intergenic 40.0%
TCATTATCTAACCCTTCAGG+TGG - chr4_3:64228490-64228509 None:intergenic 40.0%
ACCTGAAGGGTTAGATAATG+AGG + chr4_3:64228489-64228508 Msa0655540:CDS 40.0%
ACAAGAGGTCAAGATGAAAG+AGG + chr4_3:64228730-64228749 Msa0655540:CDS 40.0%
GATCAGCCCAAATAGAAAGA+AGG + chr4_3:64228899-64228918 Msa0655540:CDS 40.0%
!!! AAGTCATCGATTTTCTCGGA+AGG + chr4_3:64229038-64229057 Msa0655540:CDS 40.0%
ATCTCTCATTTGAAGGCAAC+TGG - chr4_3:64229071-64229090 None:intergenic 40.0%
! TTGACGGATCTCTCATTTGA+AGG - chr4_3:64229078-64229097 None:intergenic 40.0%
GTGGAAGATTTATTCTGCCT+CGG - chr4_3:64229110-64229129 None:intergenic 40.0%
AGGATCCAGGATAGATTAAG+AGG + chr4_3:64229264-64229283 Msa0655540:CDS 40.0%
TCCAGGATAGATTAAGAGGA+AGG + chr4_3:64229268-64229287 Msa0655540:CDS 40.0%
ACCTTCCTCTTAATCTATCC+TGG - chr4_3:64229272-64229291 None:intergenic 40.0%
TTGCTGAACTTAAGTATGGG+AGG + chr4_3:64229367-64229386 Msa0655540:CDS 40.0%
TTGGAAAGAGGAAAAGCTTC+AGG + chr4_3:64229418-64229437 Msa0655540:CDS 40.0%
TGGAAAGAGGAAAAGCTTCA+GGG + chr4_3:64229419-64229438 Msa0655540:CDS 40.0%
!!! AGAGGTTTTGGACCTTCAAA+TGG - chr4_3:64229471-64229490 None:intergenic 40.0%
! GTCATCATGTTTGCTACTGT+GGG - chr4_3:64229544-64229563 None:intergenic 40.0%
! TGTCATCATGTTTGCTACTG+TGG - chr4_3:64229545-64229564 None:intergenic 40.0%
! CTCTGACAATGTTCCGTTTT+CGG - chr4_3:64229586-64229605 None:intergenic 40.0%
ACCTTCATACTCCTGATCTT+CGG - chr4_3:64229712-64229731 None:intergenic 40.0%
GGAGACTATGAATATGAGCA+AGG + chr4_3:64229735-64229754 Msa0655540:CDS 40.0%
TGAATATGAGCAAGGTGATG+AGG + chr4_3:64229743-64229762 Msa0655540:CDS 40.0%
GATGACTTTGCCAAGAAGAT+TGG + chr4_3:64229831-64229850 Msa0655540:CDS 40.0%
TAGAGAGAGAGAGAGAGTAG+AGG - chr4_3:64226588-64226607 None:intergenic 45.0%
CTCTCTCTACCCAATTTCTG+TGG + chr4_3:64226599-64226618 Msa0655540:five_prime_UTR 45.0%
TCTCTACCCAATTTCTGTGG+CGG + chr4_3:64226602-64226621 Msa0655540:five_prime_UTR 45.0%
GAGAAGAGGAGAAGAAGTAG+AGG - chr4_3:64226639-64226658 None:intergenic 45.0%
GATCCATCGATCTCTTCTTC+TGG + chr4_3:64226672-64226691 Msa0655540:five_prime_UTR 45.0%
AACCCAGAAGAAGAGATCGA+TGG - chr4_3:64226678-64226697 None:intergenic 45.0%
ATCGATCTCTTCTTCTGGGT+TGG + chr4_3:64226677-64226696 Msa0655540:five_prime_UTR 45.0%
TCGATCTCTTCTTCTGGGTT+GGG + chr4_3:64226678-64226697 Msa0655540:five_prime_UTR 45.0%
! GAATCTGAAGTTGTGGCTGT+TGG - chr4_3:64226721-64226740 None:intergenic 45.0%
! TCATCTTGAGGAGAAGGTGT+TGG - chr4_3:64226755-64226774 None:intergenic 45.0%
AAGGCTTCATCTTGAGGAGA+AGG - chr4_3:64226761-64226780 None:intergenic 45.0%
CAGAGTGGGTGAAGGAAATT+AGG + chr4_3:64227192-64227211 Msa0655540:intron 45.0%
TTGTGGCTGTGCAAATCATG+TGG + chr4_3:64227661-64227680 Msa0655540:intron 45.0%
CTCTAGCATACTCACTATGG+CGG - chr4_3:64227840-64227859 None:intergenic 45.0%
!! GGATGACGGAATGAACACTT+GGG - chr4_3:64227910-64227929 None:intergenic 45.0%
CAAGTGTTCATTCCGTCATC+CGG + chr4_3:64227909-64227928 Msa0655540:CDS 45.0%
! GTGCTGGTAAAGAAACTCAC+CGG - chr4_3:64227931-64227950 None:intergenic 45.0%
AAAGGACAGAAAACTCGTGC+TGG - chr4_3:64227947-64227966 None:intergenic 45.0%
TTTACATGCAGCCTCTTGAC+GGG + chr4_3:64228053-64228072 Msa0655540:intron 45.0%
ACCATTATAAGGCGGTGCAT+GGG - chr4_3:64228161-64228180 None:intergenic 45.0%
TACCATTATAAGGCGGTGCA+TGG - chr4_3:64228162-64228181 None:intergenic 45.0%
TTACTGCCATTGGTAGGGTT+TGG - chr4_3:64228262-64228281 None:intergenic 45.0%
AACTTGGATTCTCAGCTCCT+TGG - chr4_3:64228318-64228337 None:intergenic 45.0%
ACTTCCCAAGCAAATGTTGC+AGG + chr4_3:64228385-64228404 Msa0655540:CDS 45.0%
CAACACCTGCAACATTTGCT+TGG - chr4_3:64228393-64228412 None:intergenic 45.0%
TTATCTAACCCTTCAGGTGG+TGG - chr4_3:64228487-64228506 None:intergenic 45.0%
GCCTCATTATCTAACCCTTC+AGG - chr4_3:64228493-64228512 None:intergenic 45.0%
TTGATGCACACGATTAGACC+GGG - chr4_3:64228566-64228585 None:intergenic 45.0%
GTTGATGCACACGATTAGAC+CGG - chr4_3:64228567-64228586 None:intergenic 45.0%
TTGTGATCATCTGGCAAACG+AGG - chr4_3:64228589-64228608 None:intergenic 45.0%
CGTCATTGTCCTTACCACTA+TGG - chr4_3:64228615-64228634 None:intergenic 45.0%
GCTACAAGAACATCAAACCC+AGG - chr4_3:64228658-64228677 None:intergenic 45.0%
GATCACATGCAAGAGCCATA+TGG + chr4_3:64228859-64228878 Msa0655540:CDS 45.0%
TTTCTAGGTTCCCAGCCATA+TGG - chr4_3:64228877-64228896 None:intergenic 45.0%
ATATGGCTGGGAACCTAGAA+AGG + chr4_3:64228876-64228895 Msa0655540:CDS 45.0%
TATGGCTGGGAACCTAGAAA+GGG + chr4_3:64228877-64228896 Msa0655540:CDS 45.0%
ATTTGGGCTGATCCCTTTCT+AGG - chr4_3:64228892-64228911 None:intergenic 45.0%
TGCGCTTGGATAAACGATGT+CGG - chr4_3:64228972-64228991 None:intergenic 45.0%
TCCGTCAATAATCGTTTCCG+AGG + chr4_3:64229090-64229109 Msa0655540:CDS 45.0%
GCCTCGGAAACGATTATTGA+CGG - chr4_3:64229094-64229113 None:intergenic 45.0%
TTGGACAGAGGAAGAATCAG+TGG + chr4_3:64229201-64229220 Msa0655540:CDS 45.0%
AAGTTTCTCCTCTCGTCATC+TGG - chr4_3:64229297-64229316 None:intergenic 45.0%
CTGAAGGAGAAGAAAGGAGT+TGG + chr4_3:64229501-64229520 Msa0655540:CDS 45.0%
! ATCATGTTTGCTACTGTGGG+AGG - chr4_3:64229541-64229560 None:intergenic 45.0%
GGAAGAAGAGTCCAAGATTC+AGG + chr4_3:64229611-64229630 Msa0655540:CDS 45.0%
AACTCACGGTCAATCATCTG+AGG + chr4_3:64229662-64229681 Msa0655540:CDS 45.0%
! GATCAGGAGTATGAAGGTGA+AGG + chr4_3:64229714-64229733 Msa0655540:CDS 45.0%
GACAGATATTACCCCAGTTG+AGG - chr4_3:64229978-64229997 None:intergenic 45.0%
!!! AAAAATTTAATTTTGATTAA+TGG + chr4_3:64226959-64226978 Msa0655540:intron 5.0%
!!! AAAATTTAATTTTGATTAAT+GGG + chr4_3:64226960-64226979 Msa0655540:intron 5.0%
!! TAATAAAATAACAAAAATTA+TGG - chr4_3:64227257-64227276 None:intergenic 5.0%
!!! CTTTTTATTTTAATAATAAT+AGG - chr4_3:64227468-64227487 None:intergenic 5.0%
AGAGAGCCGCCACAGAAATT+GGG - chr4_3:64226611-64226630 None:intergenic 50.0%
!! CGGATGACGGAATGAACACT+TGG - chr4_3:64227911-64227930 None:intergenic 50.0%
GTTCCTAACAACCCGTCAAG+AGG - chr4_3:64228067-64228086 None:intergenic 50.0%
ACCCATGCACCGCCTTATAA+TGG + chr4_3:64228157-64228176 Msa0655540:CDS 50.0%
CATGGACCAAACCCTACCAA+TGG + chr4_3:64228253-64228272 Msa0655540:CDS 50.0%
TGGATTCTCAGCTCCTTGGT+TGG - chr4_3:64228314-64228333 None:intergenic 50.0%
ACACGATTAGACCGGGCATT+AGG - chr4_3:64228559-64228578 None:intergenic 50.0%
TTTCTCAGAGAGTCGTCTCC+TGG + chr4_3:64228637-64228656 Msa0655540:CDS 50.0%
TTCTCAGAGAGTCGTCTCCT+GGG + chr4_3:64228638-64228657 Msa0655540:CDS 50.0%
GATAGATTTCGTGTGCCCCA+AGG + chr4_3:64228823-64228842 Msa0655540:CDS 50.0%
ACATGCAAGAGCCATATGGC+TGG + chr4_3:64228863-64228882 Msa0655540:CDS 50.0%
CATGCAAGAGCCATATGGCT+GGG + chr4_3:64228864-64228883 Msa0655540:CDS 50.0%
TCGTAGTCCTGACAGTGTTG+AGG + chr4_3:64228936-64228955 Msa0655540:CDS 50.0%
! TCTGAGACCTCAACACTGTC+AGG - chr4_3:64228946-64228965 None:intergenic 50.0%
GACATCGTTTATCCAAGCGC+AGG + chr4_3:64228971-64228990 Msa0655540:CDS 50.0%
TCGTTTATCCAAGCGCAGGA+AGG + chr4_3:64228975-64228994 Msa0655540:CDS 50.0%
CGTTTATCCAAGCGCAGGAA+GGG + chr4_3:64228976-64228995 Msa0655540:CDS 50.0%
ATCTGTCGTCGCTCATGATG+AGG + chr4_3:64229011-64229030 Msa0655540:CDS 50.0%
TGACTGTCACCACCATTTGG+TGG - chr4_3:64229129-64229148 None:intergenic 50.0%
AGGTGACTGTCACCACCATT+TGG - chr4_3:64229132-64229151 None:intergenic 50.0%
TGGTGACAGTCACCTAGAGA+GGG + chr4_3:64229137-64229156 Msa0655540:CDS 50.0%
CTCTGTCTAAGTCCCTCTCT+AGG - chr4_3:64229152-64229171 None:intergenic 50.0%
CTAGAGAGGGACTTAGACAG+AGG + chr4_3:64229150-64229169 Msa0655540:CDS 50.0%
AACCAGCAGTCACCTAGAGA+GGG + chr4_3:64229176-64229195 Msa0655540:CDS 50.0%
ACAGAGGAAGAATCAGTGGC+CGG + chr4_3:64229205-64229224 Msa0655540:CDS 50.0%
GAAGCCTTCCAGATGACAAC+CGG - chr4_3:64229227-64229246 None:intergenic 50.0%
AAGGCTTCAATCGCCTCATG+AGG + chr4_3:64229239-64229258 Msa0655540:CDS 50.0%
AGGCTTCAATCGCCTCATGA+GGG + chr4_3:64229240-64229259 Msa0655540:CDS 50.0%
TTCAATCGCCTCATGAGGGA+AGG + chr4_3:64229244-64229263 Msa0655540:CDS 50.0%
CTTCAGCAGTCGATCGAATG+AGG + chr4_3:64229314-64229333 Msa0655540:CDS 50.0%
GATCGAATGAGGACCGAAGT+GGG + chr4_3:64229325-64229344 Msa0655540:CDS 50.0%
GAGAAGAAAGGAGTTGGAGC+TGG + chr4_3:64229507-64229526 Msa0655540:CDS 50.0%
CGGAACATTGTCAGAGAGCA+AGG + chr4_3:64229590-64229609 Msa0655540:CDS 50.0%
TCCAAGATTCAGGCTGCTGA+TGG + chr4_3:64229621-64229640 Msa0655540:CDS 50.0%
TCCATCAGCAGCCTGAATCT+TGG - chr4_3:64229625-64229644 None:intergenic 50.0%
CACGGTCAATCATCTGAGGA+AGG + chr4_3:64229666-64229685 Msa0655540:CDS 50.0%
! GCCGAAGATCAGGAGTATGA+AGG + chr4_3:64229708-64229727 Msa0655540:CDS 50.0%
TTAAGCATGCAGGCCTCAAC+TGG + chr4_3:64229962-64229981 Msa0655540:three_prime_UTR 50.0%
TAAGCATGCAGGCCTCAACT+GGG + chr4_3:64229963-64229982 Msa0655540:three_prime_UTR 50.0%
GAGAGAGCCGCCACAGAAAT+TGG - chr4_3:64226612-64226631 None:intergenic 55.0%
TTGTGGCTGTTGGGCAACCA+TGG - chr4_3:64226711-64226730 None:intergenic 55.0%
!! CAGCCTCTTGACGGGTTGTT+AGG + chr4_3:64228061-64228080 Msa0655540:intron 55.0%
CGGGTTGTTAGGAACACCAC+CGG + chr4_3:64228072-64228091 Msa0655540:CDS 55.0%
GCAGATGTTGCCGCAATCTG+TGG - chr4_3:64228136-64228155 None:intergenic 55.0%
GACAGATGTGCCTTCCTGCA+TGG + chr4_3:64228235-64228254 Msa0655540:CDS 55.0%
! AGGGTTTGGTCCATGCAGGA+AGG - chr4_3:64228248-64228267 None:intergenic 55.0%
! TGGTAGGGTTTGGTCCATGC+AGG - chr4_3:64228252-64228271 None:intergenic 55.0%
ATGTACCGCCACCACCTGAA+GGG + chr4_3:64228476-64228495 Msa0655540:CDS 55.0%
! TCTAACCCTTCAGGTGGTGG+CGG - chr4_3:64228484-64228503 None:intergenic 55.0%
ATTGGTTGGCGGTGGAGAAC+TGG - chr4_3:64228533-64228552 None:intergenic 55.0%
AGTTCTCCACCGCCAACCAA+TGG + chr4_3:64228532-64228551 Msa0655540:CDS 55.0%
GTTCTCCACCGCCAACCAAT+GGG + chr4_3:64228533-64228552 Msa0655540:CDS 55.0%
! GCATTAGGCCCATTGGTTGG+CGG - chr4_3:64228544-64228563 None:intergenic 55.0%
CAACCAATGGGCCTAATGCC+CGG + chr4_3:64228545-64228564 Msa0655540:CDS 55.0%
TCCAAGCGCAGGAAGGGAAA+CGG + chr4_3:64228982-64229001 Msa0655540:CDS 55.0%
GTGGTGACAGTCACCTAGAG+AGG + chr4_3:64229136-64229155 Msa0655540:CDS 55.0%
GAACCAGCAGTCACCTAGAG+AGG + chr4_3:64229175-64229194 Msa0655540:CDS 55.0%
CAGTCACCTAGAGAGGGACT+TGG + chr4_3:64229143-64229162 Msa0655540:CDS 55.0%
CTCTGTCCAAGTCCCTCTCT+AGG - chr4_3:64229191-64229210 None:intergenic 55.0%
CTAGAGAGGGACTTGGACAG+AGG + chr4_3:64229189-64229208 Msa0655540:CDS 55.0%
ATCAGTGGCCGGTTGTCATC+TGG + chr4_3:64229216-64229235 Msa0655540:CDS 55.0%
TCCTGGATCCTTCCCTCATG+AGG - chr4_3:64229255-64229274 None:intergenic 55.0%
GAAGGTTGCCAGATGACGAG+AGG + chr4_3:64229286-64229305 Msa0655540:CDS 55.0%
CGATCGAATGAGGACCGAAG+TGG + chr4_3:64229324-64229343 Msa0655540:CDS 55.0%
TTGGCGCAGAGAACCCACTT+CGG - chr4_3:64229341-64229360 None:intergenic 55.0%
AAAGGAGTTGGAGCTGGTGC+AGG + chr4_3:64229513-64229532 Msa0655540:CDS 55.0%
CGATGAAGCTGCCGAAGATC+AGG + chr4_3:64229698-64229717 Msa0655540:CDS 55.0%
AAGCATGCAGGCCTCAACTG+GGG + chr4_3:64229964-64229983 Msa0655540:three_prime_UTR 55.0%
! CTGGGTTGGGTTGTTCGCCA+TGG + chr4_3:64226691-64226710 Msa0655540:exon 60.0%
ATCTGTGGCGTGGGGACAGA+TGG - chr4_3:64228121-64228140 None:intergenic 60.0%
TGTCCCCACGCCACAGATTG+CGG + chr4_3:64228123-64228142 Msa0655540:CDS 60.0%
TTGCCGCAATCTGTGGCGTG+GGG - chr4_3:64228129-64228148 None:intergenic 60.0%
GTTGCCGCAATCTGTGGCGT+GGG - chr4_3:64228130-64228149 None:intergenic 60.0%
TGTTGCCGCAATCTGTGGCG+TGG - chr4_3:64228131-64228150 None:intergenic 60.0%
CATGTACCGCCACCACCTGA+AGG + chr4_3:64228475-64228494 Msa0655540:CDS 60.0%
! TTAGGCCCATTGGTTGGCGG+TGG - chr4_3:64228541-64228560 None:intergenic 60.0%
CGGGCATTAGGCCCATTGGT+TGG - chr4_3:64228547-64228566 None:intergenic 60.0%
AGACCGGGCATTAGGCCCAT+TGG - chr4_3:64228551-64228570 None:intergenic 60.0%
GTCCCTCTCTAGGTGACTGC+TGG - chr4_3:64229181-64229200 None:intergenic 60.0%
GTGGCCGGTTGTCATCTGGA+AGG + chr4_3:64229220-64229239 Msa0655540:CDS 60.0%
GCCTCATGAGGGAAGGATCC+AGG + chr4_3:64229251-64229270 Msa0655540:CDS 60.0%
GCAGCAGCAGCAGCAGTTGC+CGG - chr4_3:64228094-64228113 None:intergenic 65.0%
GCAACTGCTGCTGCTGCTGC+TGG + chr4_3:64228094-64228113 Msa0655540:CDS 65.0%
GCCGTTTCCCTTCCTGCGCT+TGG - chr4_3:64228986-64229005 None:intergenic 65.0%
GCAGCAGCAGCAGTTGCCGG+TGG - chr4_3:64228091-64228110 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 64226433 64230193 64226433 ID=Msa0655540;Name=Msa0655540
chr4_3 mRNA 64226433 64230193 64226433 ID=Msa0655540-mRNA-1;Parent=Msa0655540;Name=Msa0655540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=277|1|1|1|1|1|3|324|680
chr4_3 exon 64226433 64226835 64226433 ID=Msa0655540-mRNA-1:exon:18110;Parent=Msa0655540-mRNA-1
chr4_3 exon 64227820 64227930 64227820 ID=Msa0655540-mRNA-1:exon:18111;Parent=Msa0655540-mRNA-1
chr4_3 exon 64228064 64230193 64228064 ID=Msa0655540-mRNA-1:exon:18112;Parent=Msa0655540-mRNA-1
chr4_3 five_prime_UTR 64226433 64226709 64226433 ID=Msa0655540-mRNA-1:five_prime_utr;Parent=Msa0655540-mRNA-1
chr4_3 CDS 64226710 64226835 64226710 ID=Msa0655540-mRNA-1:cds;Parent=Msa0655540-mRNA-1
chr4_3 CDS 64227820 64227930 64227820 ID=Msa0655540-mRNA-1:cds;Parent=Msa0655540-mRNA-1
chr4_3 CDS 64228064 64229869 64228064 ID=Msa0655540-mRNA-1:cds;Parent=Msa0655540-mRNA-1
chr4_3 three_prime_UTR 64229870 64230193 64229870 ID=Msa0655540-mRNA-1:three_prime_utr;Parent=Msa0655540-mRNA-1
Gene Sequence

>Msa0655540

ATGGTTGCCCAACAGCCACAACTTCAGATTCAGACTCAGCAACCAACACCTTCTCCTCAAGATGAAGCCTTGAAAAGGAACACCGATTGTGTCTACTTTCTTGCTTCTCCCTTGACATGCAAAAAGGGAAACGAATGTGAGTACCGCCATAGTGAGTATGCTAGAGTCAATCCTAGAGATTGTTGGTATTGGTTGAATGGTAACTGCTTGAATCCCAAGTGTTCATTCCGTCATCCGCCTCTTGACGGGTTGTTAGGAACACCACCGGCAACTGCTGCTGCTGCTGCTGGACCATCTGTCCCCACGCCACAGATTGCGGCAACATCTGCAACCCATGCACCGCCTTATAATGGTAGTAAACAAGCCGTGCCTTGCATTTTCTTTCAAAAGGGGTTTTGCTTAAAAGGTGACAGATGTGCCTTCCTGCATGGACCAAACCCTACCAATGGCAGTAAAATAGCTACACAGGGGTCAATGACAATGACCAACCAAGGAGCTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGCATTGAAAAACATGCACAAGAAAGGAAAACTTCCCAAGCAAATGTTGCAGGTGTTGAAGCTAAACCTGTCCAAAAATTTGAGACTGCTCCACAGAAAAATATGTTTAAGTTGGTGAAGCATGTACCGCCACCACCTGAAGGGTTAGATAATGAGGCTTCGCGATTTAAGACAACCAGTTCTCCACCGCCAACCAATGGGCCTAATGCCCGGTCTAATCGTGTGCATCAACCTCGTTTGCCAGATGATCACAATTTCCATAGTGGTAAGGACAATGACGAGTTTCTCAGAGAGTCGTCTCCTGGGTTTGATGTTCTTGTAGCTGACGAACTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAACAAGAGGTCAAGATGAAAGAGGCCCAGACTCTTTGAATGAATACGATGTAGGGCATTCTGCTGATTATAGTTTAGCTGCTGATATTGATCGAGATAGATTTCGTGTGCCCCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGGCTGGGAACCTAGAAAGGGATCAGCCCAAATAGAAAGAAGGACTCATCACAGATCTCGTAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCGTTTATCCAAGCGCAGGAAGGGAAACGGCTTAAAATCTGTCGTCGCTCATGATGAGGAGCAAAGTCATCGATTTTCTCGGAAGGATTCACACCAGTTGCCTTCAAATGAGAGATCCGTCAATAATCGTTTCCGAGGCAGAATAAATCTTCCACCAAATGGTGGTGACAGTCACCTAGAGAGGGACTTAGACAGAGGAAGAACCAGCAGTCACCTAGAGAGGGACTTGGACAGAGGAAGAATCAGTGGCCGGTTGTCATCTGGAAGGCTTCAATCGCCTCATGAGGGAAGGATCCAGGATAGATTAAGAGGAAGGTTGCCAGATGACGAGAGGAGAAACTTCAGCAGTCGATCGAATGAGGACCGAAGTGGGTTCTCTGCGCCAAAAAGTCTTGCTGAACTTAAGTATGGGAGGAACACTGAGAATAATGACCAACAATCATTTGGAAAGAGGAAAAGCTTCAGGGATCACCAACAATATGAAGATGATGTACCATTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGGAGAAGAAAGGAGTTGGAGCTGGTGCAGGCTCCTCCCACAGTAGCAAACATGATGACAATAAGAATGAAGGAATTACCGAAAACGGAACATTGTCAGAGAGCAAGGAAGAAGAGTCCAAGATTCAGGCTGCTGATGGAGTTGACAATACTGATGTAACTCACGGTCAATCATCTGAGGAAGGAATGATATACGATGAAGCTGCCGAAGATCAGGAGTATGAAGGTGAAGGAGACTATGAATATGAGCAAGGTGATGAGGAGTATGAGTATGAACAAGTTGAGGGTGAAAATCAAGAGCAAGAATATATGGAAGATGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA
Protein sequence

>Msa0655540

MVAQQPQLQIQTQQPTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGTPPATAAAAAGPSVPTPQIAATSATHAPPYNGSKQAVPCIFFQKGFCLKGDRCAFLHGPNPTNGSKIATQGSMTMTNQGAENPSFKKPFGGIEKHAQERKTSQANVAGVEAKPVQKFETAPQKNMFKLVKHVPPPPEGLDNEASRFKTTSSPPPTNGPNARSNRVHQPRLPDDHNFHSGKDNDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKTRGQDERGPDSLNEYDVGHSADYSLAADIDRDRFRVPQGYDSYDHMQEPYGWEPRKGSAQIERRTHHRSRSPDSVEVSDLRHRLSKRRKGNGLKSVVAHDEEQSHRFSRKDSHQLPSNERSVNNRFRGRINLPPNGGDSHLERDLDRGRTSSHLERDLDRGRISGRLSSGRLQSPHEGRIQDRLRGRLPDDERRNFSSRSNEDRSGFSAPKSLAELKYGRNTENNDQQSFGKRKSFRDHQQYEDDVPFEGPKPLSEILKEKKGVGAGAGSSHSSKHDDNKNEGITENGTLSESKEEESKIQAADGVDNTDVTHGQSSEEGMIYDEAAEDQEYEGEGDYEYEQGDEEYEYEQVEGENQEQEYMEDEDGDDFAKKIGVVLS*