Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616720 | XP_024630097.1 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 1.13e-139 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616720 | sp|Q558Z3|SSU72_DICDI | 48.500 | 200 | 92 | 4 | 4 | 200 | 23 | 214 | 1.81e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616720 | A0A396GUT2 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 5.41e-140 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616620 | Msa0616720 | 0.914536 | 1.708987e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616720 | MtrunA17_Chr8g0376231 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 1.04e-143 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616720 | AT1G73820.2 | 75.500 | 200 | 42 | 1 | 1 | 200 | 17 | 209 | 2.10e-116 | 330 |
| Msa0616720 | AT1G73820.1 | 75.500 | 200 | 42 | 1 | 1 | 200 | 1 | 193 | 3.25e-116 | 328 |
Find 63 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAACATGGTCTCTATTA+TGG | 0.222869 | 4_2:-66734364 | None:intergenic |
| TACTCCTTCGATTCCATTCC+AGG | 0.231215 | 4_2:+66731381 | Msa0616720:five_prime_UTR |
| AACGGTATTGATAGTCAATT+TGG | 0.243908 | 4_2:+66734391 | Msa0616720:CDS |
| GAATCCTGCCAATGCTTAAA+AGG | 0.252032 | 4_2:+66732890 | Msa0616720:CDS |
| GAACCAAATGTCTATGAATT+TGG | 0.253761 | 4_2:+66731659 | Msa0616720:CDS |
| GGGTTCGATGTATCTTCTTA+TGG | 0.256941 | 4_2:+66731596 | Msa0616720:CDS |
| TTCAAACTATCTTATTGATT+TGG | 0.272112 | 4_2:+66734950 | Msa0616720:three_prime_UTR |
| ATGTTTAAGTACAATATATT+GGG | 0.276008 | 4_2:+66734994 | Msa0616720:three_prime_UTR |
| GTGCTTCCATGCTTCTGTTT+TGG | 0.284804 | 4_2:-66731553 | None:intergenic |
| AAGGAATGCAGCTGTGAAAT+TGG | 0.321236 | 4_2:+66732909 | Msa0616720:CDS |
| AATGTTTAAGTACAATATAT+TGG | 0.339732 | 4_2:+66734993 | Msa0616720:three_prime_UTR |
| AAGTAAACACCAACTCAATA+TGG | 0.358883 | 4_2:-66734928 | None:intergenic |
| TATTAAAATTATTCTTATGT+AGG | 0.379972 | 4_2:+66735061 | Msa0616720:three_prime_UTR |
| TTTAGTTTAGGCTTCGCCAC+TGG | 0.384894 | 4_2:+66735020 | Msa0616720:three_prime_UTR |
| GTACCAAATTCATAGACATT+TGG | 0.395982 | 4_2:-66731662 | None:intergenic |
| TGCATATATAGTTAGTTGTC+TGG | 0.400076 | 4_2:+66734871 | Msa0616720:three_prime_UTR |
| ACAACAGCGGCGTGAGAATC+CGG | 0.402102 | 4_2:-66731354 | None:intergenic |
| TAAAGTCTGTCTTGCTCCTA+TGG | 0.406647 | 4_2:-66734441 | None:intergenic |
| GATGTATCTTCTTATGGAAC+AGG | 0.408399 | 4_2:+66731602 | Msa0616720:CDS |
| CAACTAACTATATATGCATT+TGG | 0.439199 | 4_2:-66734866 | None:intergenic |
| GAGTGGAGCTACAAGCGAAA+TGG | 0.467833 | 4_2:+66732868 | Msa0616720:intron |
| AGATTGAAGCTGTTGAATCA+TGG | 0.474304 | 4_2:+66734677 | Msa0616720:intron |
| GTATTTGATATGGTTGTTGA+AGG | 0.475037 | 4_2:+66733000 | Msa0616720:CDS |
| ATATAGTTAGTTGTCTGGAT+TGG | 0.481476 | 4_2:+66734876 | Msa0616720:three_prime_UTR |
| TTAGTTTAGGCTTCGCCACT+GGG | 0.486456 | 4_2:+66735021 | Msa0616720:three_prime_UTR |
| ACTAGCAATAACATCATCAA+TGG | 0.487232 | 4_2:-66734707 | None:intergenic |
| CAGCGGCGTGAGAATCCGGC+TGG | 0.491593 | 4_2:-66731350 | None:intergenic |
| ATTGATTTGGAGTTTAGTTG+AGG | 0.495903 | 4_2:+66734963 | Msa0616720:three_prime_UTR |
| TCATCAAGCATATATTTGTA+AGG | 0.512106 | 4_2:-66731686 | None:intergenic |
| GATTAATGGTGAACCTGGAA+TGG | 0.521626 | 4_2:-66731394 | None:intergenic |
| TGAAATTGGCACCTCAAAGA+TGG | 0.526468 | 4_2:+66732923 | Msa0616720:CDS |
| GATTGAAGCTGTTGAATCAT+GGG | 0.531323 | 4_2:+66734678 | Msa0616720:intron |
| GGTTCTCTGAGGGAAGGACC+AGG | 0.532924 | 4_2:-66731641 | None:intergenic |
| GTTATGCATTGAAATTTAGT+CGG | 0.561438 | 4_2:+66734834 | Msa0616720:three_prime_UTR |
| GGTATTGATAGTCAATTTGG+AGG | 0.563161 | 4_2:+66734394 | Msa0616720:CDS |
| TGTTTAAGTACAATATATTG+GGG | 0.563597 | 4_2:+66734995 | Msa0616720:three_prime_UTR |
| GGTACCCACGTTAAGCTCCC+TGG | 0.567847 | 4_2:+66731623 | Msa0616720:CDS |
| CATAGACATTTGGTTCTCTG+AGG | 0.569922 | 4_2:-66731652 | None:intergenic |
| ATAGACATTTGGTTCTCTGA+GGG | 0.571121 | 4_2:-66731651 | None:intergenic |
| TAAAATCTCAGTGACCCAGC+CGG | 0.588271 | 4_2:+66731335 | Msa0616720:five_prime_UTR |
| ATCCAACCAAAACAGAAGCA+TGG | 0.589136 | 4_2:+66731547 | Msa0616720:CDS |
| TTTAAGTACAATATATTGGG+GGG | 0.589702 | 4_2:+66734997 | Msa0616720:three_prime_UTR |
| GAATGTCCACCATATTGAGT+TGG | 0.593076 | 4_2:+66734919 | Msa0616720:three_prime_UTR |
| GAATGGAATCGAAGGAGTAG+AGG | 0.594631 | 4_2:-66731377 | None:intergenic |
| AATGAAGTTTCGTTACGCCA+TGG | 0.597155 | 4_2:+66731517 | Msa0616720:exon |
| AAGGACCAGGGAGCTTAACG+TGG | 0.600033 | 4_2:-66731628 | None:intergenic |
| ACATTTGGTTCTCTGAGGGA+AGG | 0.600394 | 4_2:-66731647 | None:intergenic |
| AACCACGAGGAAGCCGCCAT+AGG | 0.612265 | 4_2:+66734425 | Msa0616720:CDS |
| TGGCAAGAAAATGCTGCTGA+TGG | 0.614390 | 4_2:+66732943 | Msa0616720:CDS |
| CTCCTATGGCGGCTTCCTCG+TGG | 0.618433 | 4_2:-66734427 | None:intergenic |
| TAAACACCAACTCAATATGG+TGG | 0.626700 | 4_2:-66734925 | None:intergenic |
| GTTTAAGTACAATATATTGG+GGG | 0.626911 | 4_2:+66734996 | Msa0616720:three_prime_UTR |
| GTTCTCTGAGGGAAGGACCA+GGG | 0.632137 | 4_2:-66731640 | None:intergenic |
| TGAACCTGGAATGGAATCGA+AGG | 0.638470 | 4_2:-66731385 | None:intergenic |
| AGTCTGTCTTGCTCCTATGG+CGG | 0.641994 | 4_2:-66734438 | None:intergenic |
| AGCGGCGTGAGAATCCGGCT+GGG | 0.646657 | 4_2:-66731349 | None:intergenic |
| TTGGTTGGATGAACAAACCA+TGG | 0.652936 | 4_2:-66731534 | None:intergenic |
| TGAAGCTGTTGAATCATGGG+AGG | 0.684017 | 4_2:+66734681 | Msa0616720:CDS |
| TGCTGATGGCATATTTGATG+TGG | 0.692771 | 4_2:+66732957 | Msa0616720:CDS |
| AGGACCAGGGAGCTTAACGT+GGG | 0.701054 | 4_2:-66731627 | None:intergenic |
| TATTCATTAAACATTCCCAG+TGG | 0.704848 | 4_2:-66735036 | None:intergenic |
| GAAGGAGTAGAGGACAACAG+CGG | 0.795388 | 4_2:-66731367 | None:intergenic |
| GGAGGTCAAAGATAACCACG+AGG | 0.849826 | 4_2:+66734412 | Msa0616720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATGCAAATAAAAAA+AGG | - | chr4_2:66731740-66731759 | None:intergenic | 10.0% |
| !! | AAATAATTAAGTAAACAAAA+GGG | - | chr4_2:66731766-66731785 | None:intergenic | 10.0% |
| !! | AAAATAATTAAGTAAACAAA+AGG | - | chr4_2:66731767-66731786 | None:intergenic | 10.0% |
| !!! | TACTTAATTATTTTAGTTTT+AGG | + | chr4_2:66731773-66731792 | Msa0616720:intron | 10.0% |
| !!! | AAATTTAAGTTTTAGTTTTA+TGG | + | chr4_2:66731893-66731912 | Msa0616720:intron | 10.0% |
| !!! | AATTTAAGTTTTAGTTTTAT+GGG | + | chr4_2:66731894-66731913 | Msa0616720:intron | 10.0% |
| !!! | TTTTGTTTTAAAAGAATTTT+AGG | + | chr4_2:66732282-66732301 | Msa0616720:intron | 10.0% |
| !! | AATGTGATATAAAAAAAAAA+GGG | - | chr4_2:66734042-66734061 | None:intergenic | 10.0% |
| !!! | GAGTTATATATTTTTAATTT+TGG | + | chr4_2:66734592-66734611 | Msa0616720:intron | 10.0% |
| !! | AATCAATATATTGAAAAAAG+TGG | - | chr4_2:66731448-66731467 | None:intergenic | 15.0% |
| !!! | TCAATATATTGATTCTTATT+AGG | + | chr4_2:66731454-66731473 | Msa0616720:intron | 15.0% |
| !!! | ATTTAAGTTTTAGTTTTATG+GGG | + | chr4_2:66731895-66731914 | Msa0616720:intron | 15.0% |
| !! | AAATTAAAAACAAGCAAAAT+TGG | - | chr4_2:66731942-66731961 | None:intergenic | 15.0% |
| !! | TGAAAATGAAAATTTAGATT+TGG | + | chr4_2:66732209-66732228 | Msa0616720:intron | 15.0% |
| !! | GAAAATGAAAATTTAGATTT+GGG | + | chr4_2:66732210-66732229 | Msa0616720:intron | 15.0% |
| !! | AAAATGAAAATTTAGATTTG+GGG | + | chr4_2:66732211-66732230 | Msa0616720:intron | 15.0% |
| !! | CAATGTGATATAAAAAAAAA+AGG | - | chr4_2:66734043-66734062 | None:intergenic | 15.0% |
| !!! | GATTTTACTATTTAAGTTAT+TGG | + | chr4_2:66734187-66734206 | Msa0616720:intron | 15.0% |
| !!! | TTTTTGAAACAAAATTTCAT+AGG | - | chr4_2:66734799-66734818 | None:intergenic | 15.0% |
| !! | AATGTTTAAGTACAATATAT+TGG | + | chr4_2:66734993-66735012 | Msa0616720:three_prime_UTR | 15.0% |
| !! | ATGTTTAAGTACAATATATT+GGG | + | chr4_2:66734994-66735013 | Msa0616720:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTAGTAGAATTTC+AGG | + | chr4_2:66731964-66731983 | Msa0616720:intron | 20.0% |
| !!! | AGATTTGTGTATTTTTCATA+AGG | + | chr4_2:66732020-66732039 | Msa0616720:intron | 20.0% |
| !!! | ATTAACATTAATTTGTCTAC+AGG | + | chr4_2:66732132-66732151 | Msa0616720:intron | 20.0% |
| !! | AAATGAAAATTTAGATTTGG+GGG | + | chr4_2:66732212-66732231 | Msa0616720:intron | 20.0% |
| !! | TGATGATACTAAGAAATATT+GGG | + | chr4_2:66732716-66732735 | Msa0616720:intron | 20.0% |
| !!! | TGAAGAAAAAGTATTTGATA+TGG | + | chr4_2:66732990-66733009 | Msa0616720:CDS | 20.0% |
| !! | TGATGTTATAAATAAGTGAT+TGG | + | chr4_2:66733523-66733542 | Msa0616720:intron | 20.0% |
| !!! | TTTTTTCAGACAAAAAGTTA+AGG | + | chr4_2:66734222-66734241 | Msa0616720:intron | 20.0% |
| !!! | TTTTTCAGACAAAAAGTTAA+GGG | + | chr4_2:66734223-66734242 | Msa0616720:intron | 20.0% |
| !! | AGACATGAAAATATTAAAAC+AGG | - | chr4_2:66734627-66734646 | None:intergenic | 20.0% |
| !!! | TTTAATATTTTCATGTCTCA+TGG | + | chr4_2:66734629-66734648 | Msa0616720:intron | 20.0% |
| !!! | AGTTGTATAATTTTAGTAGA+AGG | - | chr4_2:66734773-66734792 | None:intergenic | 20.0% |
| !!! | TTCAAACTATCTTATTGATT+TGG | + | chr4_2:66734950-66734969 | Msa0616720:three_prime_UTR | 20.0% |
| !! | TGTTTAAGTACAATATATTG+GGG | + | chr4_2:66734995-66735014 | Msa0616720:three_prime_UTR | 20.0% |
| ! | AAAAAGTGGAATTGAGAAAT+CGG | - | chr4_2:66731434-66731453 | None:intergenic | 25.0% |
| !! | ACTTTCTTTTCAAAAGACAA+GGG | + | chr4_2:66731576-66731595 | Msa0616720:CDS | 25.0% |
| ! | TCATCAAGCATATATTTGTA+AGG | - | chr4_2:66731689-66731708 | None:intergenic | 25.0% |
| ! | TAAAAAAAGGATACAGTTCA+GGG | - | chr4_2:66731727-66731746 | None:intergenic | 25.0% |
| ! | ATAAAAAAAGGATACAGTTC+AGG | - | chr4_2:66731728-66731747 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTAAGCATAAGTG+AGG | + | chr4_2:66731796-66731815 | Msa0616720:intron | 25.0% |
| ! | TTCAGCTAAAACAATCAAAA+GGG | - | chr4_2:66731875-66731894 | None:intergenic | 25.0% |
| ! | TTTCAGCTAAAACAATCAAA+AGG | - | chr4_2:66731876-66731895 | None:intergenic | 25.0% |
| ! | TCATAAGGATTTATGATGAT+AGG | + | chr4_2:66732035-66732054 | Msa0616720:intron | 25.0% |
| ! | ATTAATGTTAATATCGTGTC+TGG | - | chr4_2:66732124-66732143 | None:intergenic | 25.0% |
| ! | TCAGCTAAAAAAAATCGAAA+GGG | - | chr4_2:66732192-66732211 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAAATCGAA+AGG | - | chr4_2:66732193-66732212 | None:intergenic | 25.0% |
| ! | AATGAAAATTTAGATTTGGG+GGG | + | chr4_2:66732213-66732232 | Msa0616720:intron | 25.0% |
| ! | TTAGGATTTAGTGAATAGTT+TGG | + | chr4_2:66732369-66732388 | Msa0616720:intron | 25.0% |
| ! | TAGGATTTAGTGAATAGTTT+GGG | + | chr4_2:66732370-66732389 | Msa0616720:intron | 25.0% |
| !! | TGTATAATCTATGAAGTACT+GGG | + | chr4_2:66732403-66732422 | Msa0616720:intron | 25.0% |
| ! | CTGATGATACTAAGAAATAT+TGG | + | chr4_2:66732715-66732734 | Msa0616720:intron | 25.0% |
| ! | GATGATACTAAGAAATATTG+GGG | + | chr4_2:66732717-66732736 | Msa0616720:intron | 25.0% |
| ! | TACAAAACAAGAATTCGAAA+TGG | - | chr4_2:66732822-66732841 | None:intergenic | 25.0% |
| !!! | TTTCGAATTCTTGTTTTGTA+TGG | + | chr4_2:66732822-66732841 | Msa0616720:intron | 25.0% |
| !! | AAAAGGTGTAAAAAAGACAA+AGG | - | chr4_2:66733031-66733050 | None:intergenic | 25.0% |
| ! | TTAGATCAATCAAAGAGAAA+AGG | - | chr4_2:66733048-66733067 | None:intergenic | 25.0% |
| ! | TTTCTGTAATGAATCAAGAT+AGG | + | chr4_2:66733356-66733375 | Msa0616720:intron | 25.0% |
| !! | AGTTGCATTTTATATCTTAG+TGG | + | chr4_2:66733426-66733445 | Msa0616720:intron | 25.0% |
| ! | TAACTAATGAGTCATCATAA+TGG | - | chr4_2:66733489-66733508 | None:intergenic | 25.0% |
| !! | ATGTTTAGAGTAGTTAGTTA+TGG | + | chr4_2:66733587-66733606 | Msa0616720:intron | 25.0% |
| !! | AACTGTTATGAACAACTTTT+TGG | - | chr4_2:66733658-66733677 | None:intergenic | 25.0% |
| ! | ATAAAACATGGTCTCTATTA+TGG | - | chr4_2:66734367-66734386 | None:intergenic | 25.0% |
| !!! | AGACCATGTTTTATTGAAAA+CGG | + | chr4_2:66734373-66734392 | Msa0616720:CDS | 25.0% |
| !! | ATACCGTTTTCAATAAAACA+TGG | - | chr4_2:66734379-66734398 | None:intergenic | 25.0% |
| !! | CTTACCATGGATATATTTTA+TGG | + | chr4_2:66734652-66734671 | Msa0616720:intron | 25.0% |
| ! | CTATCCATAAAATATATCCA+TGG | - | chr4_2:66734659-66734678 | None:intergenic | 25.0% |
| ! | GTTATGCATTGAAATTTAGT+CGG | + | chr4_2:66734834-66734853 | Msa0616720:three_prime_UTR | 25.0% |
| ! | CAACTAACTATATATGCATT+TGG | - | chr4_2:66734869-66734888 | None:intergenic | 25.0% |
| ! | GTTTAAGTACAATATATTGG+GGG | + | chr4_2:66734996-66735015 | Msa0616720:three_prime_UTR | 25.0% |
| ! | TTTAAGTACAATATATTGGG+GGG | + | chr4_2:66734997-66735016 | Msa0616720:three_prime_UTR | 25.0% |
| ! | CACTTTCTTTTCAAAAGACA+AGG | + | chr4_2:66731575-66731594 | Msa0616720:CDS | 30.0% |
| GAACCAAATGTCTATGAATT+TGG | + | chr4_2:66731659-66731678 | Msa0616720:CDS | 30.0% | |
| GTACCAAATTCATAGACATT+TGG | - | chr4_2:66731665-66731684 | None:intergenic | 30.0% | |
| AGGATTTATGATGATAGGTT+AGG | + | chr4_2:66732040-66732059 | Msa0616720:intron | 30.0% | |
| TTAGGATTGAATGCATAGTA+TGG | + | chr4_2:66732058-66732077 | Msa0616720:intron | 30.0% | |
| TAGGATTGAATGCATAGTAT+GGG | + | chr4_2:66732059-66732078 | Msa0616720:intron | 30.0% | |
| ! | TACAGGAAGATGTGTATTTT+AGG | + | chr4_2:66732149-66732168 | Msa0616720:intron | 30.0% |
| GAATTGTGTGTTTCTCATAA+AGG | + | chr4_2:66732331-66732350 | Msa0616720:intron | 30.0% | |
| TGTTTCTCATAAAGGATTGA+GGG | + | chr4_2:66732339-66732358 | Msa0616720:intron | 30.0% | |
| TGAATAGTTTGGGAAAAAGA+TGG | + | chr4_2:66732380-66732399 | Msa0616720:intron | 30.0% | |
| GTGTATAATCTATGAAGTAC+TGG | + | chr4_2:66732402-66732421 | Msa0616720:intron | 30.0% | |
| ! | AATAATTGAGTTGTCAGTGT+CGG | + | chr4_2:66732504-66732523 | Msa0616720:intron | 30.0% |
| ! | TATTGGGGATTTTGTAATTG+AGG | + | chr4_2:66732732-66732751 | Msa0616720:intron | 30.0% |
| ! | GATTTTGTAATTGAGGATGA+GGG | + | chr4_2:66732739-66732758 | Msa0616720:intron | 30.0% |
| ! | ATTTTGTAATTGAGGATGAG+GGG | + | chr4_2:66732740-66732759 | Msa0616720:intron | 30.0% |
| !!! | TCTTGTTTTGTATGGTGAAA+TGG | + | chr4_2:66732830-66732849 | Msa0616720:intron | 30.0% |
| GTATTTGATATGGTTGTTGA+AGG | + | chr4_2:66733000-66733019 | Msa0616720:CDS | 30.0% | |
| GTGAAGACGAATAAAAAGTT+TGG | - | chr4_2:66733120-66733139 | None:intergenic | 30.0% | |
| ATTGTAGAGAAAACTCTTTG+AGG | + | chr4_2:66733145-66733164 | Msa0616720:intron | 30.0% | |
| CTACATAGTTGCAATTGTTA+TGG | + | chr4_2:66733279-66733298 | Msa0616720:intron | 30.0% | |
| TAATCAGTAGCAAGATACAT+AGG | + | chr4_2:66733333-66733352 | Msa0616720:intron | 30.0% | |
| ! | TAGGCCTAAACTATTTTCTT+GGG | - | chr4_2:66733382-66733401 | None:intergenic | 30.0% |
| ! | TTAGGCCTAAACTATTTTCT+TGG | - | chr4_2:66733383-66733402 | None:intergenic | 30.0% |
| ! | TGTTATATCACATTGATAGC+AGG | + | chr4_2:66733841-66733860 | Msa0616720:intron | 30.0% |
| !! | TAAAGTTGTTTTCATGTGAC+TGG | + | chr4_2:66733887-66733906 | Msa0616720:intron | 30.0% |
| ATAAAAAAAAAAGGGCAACC+CGG | - | chr4_2:66734034-66734053 | None:intergenic | 30.0% | |
| TTTCATATACAACACTTTCG+TGG | + | chr4_2:66734132-66734151 | Msa0616720:intron | 30.0% | |
| !! | AACGGTATTGATAGTCAATT+TGG | + | chr4_2:66734391-66734410 | Msa0616720:CDS | 30.0% |
| ! | ACAGACTTTAGATTTTTGTC+AGG | + | chr4_2:66734454-66734473 | Msa0616720:CDS | 30.0% |
| GAACATAGATACTAATGCAA+TGG | + | chr4_2:66734543-66734562 | Msa0616720:intron | 30.0% | |
| ACTAGCAATAACATCATCAA+TGG | - | chr4_2:66734710-66734729 | None:intergenic | 30.0% | |
| !!! | CTAGTTTTGAGAAACAACAT+CGG | + | chr4_2:66734725-66734744 | Msa0616720:CDS | 30.0% |
| TGCATATATAGTTAGTTGTC+TGG | + | chr4_2:66734871-66734890 | Msa0616720:three_prime_UTR | 30.0% | |
| ATATAGTTAGTTGTCTGGAT+TGG | + | chr4_2:66734876-66734895 | Msa0616720:three_prime_UTR | 30.0% | |
| AAGTAAACACCAACTCAATA+TGG | - | chr4_2:66734931-66734950 | None:intergenic | 30.0% | |
| !! | ATTGATTTGGAGTTTAGTTG+AGG | + | chr4_2:66734963-66734982 | Msa0616720:three_prime_UTR | 30.0% |
| TATTCATTAAACATTCCCAG+TGG | - | chr4_2:66735039-66735058 | None:intergenic | 30.0% | |
| !! | CGTGGTAATGAATGGATTAA+TGG | - | chr4_2:66731411-66731430 | None:intergenic | 35.0% |
| GATGTATCTTCTTATGGAAC+AGG | + | chr4_2:66731602-66731621 | Msa0616720:CDS | 35.0% | |
| !! | ATAGACATTTGGTTCTCTGA+GGG | - | chr4_2:66731654-66731673 | None:intergenic | 35.0% |
| ATGCATAGTATGGGAAACAT+TGG | + | chr4_2:66732068-66732087 | Msa0616720:intron | 35.0% | |
| GTGTATAATCTACGAAGTTC+TGG | + | chr4_2:66732090-66732109 | Msa0616720:intron | 35.0% | |
| GTTAATATCGTGTCTGGTAT+CGG | - | chr4_2:66732118-66732137 | None:intergenic | 35.0% | |
| GTGTTTCTCATAAAGGATTG+AGG | + | chr4_2:66732338-66732357 | Msa0616720:intron | 35.0% | |
| TAGTAATTTGGGAATGACTC+TGG | + | chr4_2:66732464-66732483 | Msa0616720:intron | 35.0% | |
| TCACTTTCGATCAGAAGTAA+CGG | + | chr4_2:66732536-66732555 | Msa0616720:intron | 35.0% | |
| CAAAATTGCCAGCATATCAA+AGG | - | chr4_2:66732680-66732699 | None:intergenic | 35.0% | |
| ! | TGATATGCTGGCAATTTTGT+TGG | + | chr4_2:66732681-66732700 | Msa0616720:intron | 35.0% |
| ! | GGATTTTGTAATTGAGGATG+AGG | + | chr4_2:66732738-66732757 | Msa0616720:intron | 35.0% |
| TAGGCCCAAGAAAATAGTTT+AGG | + | chr4_2:66733375-66733394 | Msa0616720:intron | 35.0% | |
| ATCATAGTCCTTAGCTACTT+AGG | - | chr4_2:66733401-66733420 | None:intergenic | 35.0% | |
| ! | GAGTCATATCATGTTCTAGA+AGG | + | chr4_2:66733451-66733470 | Msa0616720:intron | 35.0% |
| ! | CTTTTAACAGAACATGCGTT+TGG | + | chr4_2:66733774-66733793 | Msa0616720:intron | 35.0% |
| ! | TATATCACATTGATAGCAGG+AGG | + | chr4_2:66733844-66733863 | Msa0616720:intron | 35.0% |
| ! | ATATCACATTGATAGCAGGA+GGG | + | chr4_2:66733845-66733864 | Msa0616720:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr4_2:66733937-66733956 | Msa0616720:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr4_2:66733942-66733961 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr4_2:66733942-66733961 | Msa0616720:intron | 35.0% | |
| AAGTTAAGGGCAAGATACAT+AGG | + | chr4_2:66734236-66734255 | Msa0616720:intron | 35.0% | |
| !! | GGTATTGATAGTCAATTTGG+AGG | + | chr4_2:66734394-66734413 | Msa0616720:CDS | 35.0% |
| ! | GACTTTAGATTTTTGTCAGG+AGG | + | chr4_2:66734457-66734476 | Msa0616720:CDS | 35.0% |
| AGATTGAAGCTGTTGAATCA+TGG | + | chr4_2:66734677-66734696 | Msa0616720:intron | 35.0% | |
| GATTGAAGCTGTTGAATCAT+GGG | + | chr4_2:66734678-66734697 | Msa0616720:intron | 35.0% | |
| TAAACACCAACTCAATATGG+TGG | - | chr4_2:66734928-66734947 | None:intergenic | 35.0% | |
| ! | TATATTGGGGGGTTTAGTTT+AGG | + | chr4_2:66735008-66735027 | Msa0616720:three_prime_UTR | 35.0% |
| GATTAATGGTGAACCTGGAA+TGG | - | chr4_2:66731397-66731416 | None:intergenic | 40.0% | |
| !! | GAATGGATTAATGGTGAACC+TGG | - | chr4_2:66731402-66731421 | None:intergenic | 40.0% |
| AATGAAGTTTCGTTACGCCA+TGG | + | chr4_2:66731517-66731536 | Msa0616720:exon | 40.0% | |
| TTGGTTGGATGAACAAACCA+TGG | - | chr4_2:66731537-66731556 | None:intergenic | 40.0% | |
| ATCCAACCAAAACAGAAGCA+TGG | + | chr4_2:66731547-66731566 | Msa0616720:CDS | 40.0% | |
| !!! | TTCCATGCTTCTGTTTTGGT+TGG | - | chr4_2:66731552-66731571 | None:intergenic | 40.0% |
| GGGTTCGATGTATCTTCTTA+TGG | + | chr4_2:66731596-66731615 | Msa0616720:CDS | 40.0% | |
| !! | CATAGACATTTGGTTCTCTG+AGG | - | chr4_2:66731655-66731674 | None:intergenic | 40.0% |
| CATAAAGGATTGAGGGTGAT+AGG | + | chr4_2:66732346-66732365 | Msa0616720:intron | 40.0% | |
| ATCCGACACTGGTAGTAATT+TGG | + | chr4_2:66732452-66732471 | Msa0616720:intron | 40.0% | |
| TCCGACACTGGTAGTAATTT+GGG | + | chr4_2:66732453-66732472 | Msa0616720:intron | 40.0% | |
| TCCCAAATTACTACCAGTGT+CGG | - | chr4_2:66732457-66732476 | None:intergenic | 40.0% | |
| TAATTTGGGAATGACTCTGG+TGG | + | chr4_2:66732467-66732486 | Msa0616720:intron | 40.0% | |
| CTTCTGATCGAAAGTGAATC+AGG | - | chr4_2:66732533-66732552 | None:intergenic | 40.0% | |
| ! | GAGTGTTTTGCATCTGTTGT+TGG | + | chr4_2:66732782-66732801 | Msa0616720:intron | 40.0% |
| TTCGAAATGGCATTTCCAAG+AGG | - | chr4_2:66732809-66732828 | None:intergenic | 40.0% | |
| GGATGTATCCTTAACAAGAG+TGG | + | chr4_2:66732851-66732870 | Msa0616720:intron | 40.0% | |
| TTGTAGCTCCACTCTTGTTA+AGG | - | chr4_2:66732862-66732881 | None:intergenic | 40.0% | |
| GAATCCTGCCAATGCTTAAA+AGG | + | chr4_2:66732890-66732909 | Msa0616720:CDS | 40.0% | |
| !!! | CATTCCTTTTAAGCATTGGC+AGG | - | chr4_2:66732897-66732916 | None:intergenic | 40.0% |
| ! | GCTGCATTCCTTTTAAGCAT+TGG | - | chr4_2:66732901-66732920 | None:intergenic | 40.0% |
| AAGGAATGCAGCTGTGAAAT+TGG | + | chr4_2:66732909-66732928 | Msa0616720:CDS | 40.0% | |
| TGAAATTGGCACCTCAAAGA+TGG | + | chr4_2:66732923-66732942 | Msa0616720:CDS | 40.0% | |
| ! | GCATTTTCTTGCCATCTTTG+AGG | - | chr4_2:66732937-66732956 | None:intergenic | 40.0% |
| TGCTGATGGCATATTTGATG+TGG | + | chr4_2:66732957-66732976 | Msa0616720:CDS | 40.0% | |
| ! | ACTCTTTGAGGAGCATGTTT+CGG | + | chr4_2:66733157-66733176 | Msa0616720:intron | 40.0% |
| AGTTTAGGCCTAAGTAGCTA+AGG | + | chr4_2:66733390-66733409 | Msa0616720:intron | 40.0% | |
| ! | TTTGGAGTCACAACTTTGCA+AGG | + | chr4_2:66733792-66733811 | Msa0616720:intron | 40.0% |
| ! | TATCACATTGATAGCAGGAG+GGG | + | chr4_2:66733846-66733865 | Msa0616720:intron | 40.0% |
| !! | GTTGTTTTCATGTGACTGGA+AGG | + | chr4_2:66733891-66733910 | Msa0616720:intron | 40.0% |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr4_2:66733936-66733955 | Msa0616720:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4_2:66733968-66733987 | Msa0616720:intron | 40.0% | |
| GCAAGATACATAGGTTTCTC+TGG | + | chr4_2:66734245-66734264 | Msa0616720:intron | 40.0% | |
| GGAATGATTTCTGTACGCTT+TGG | + | chr4_2:66734266-66734285 | Msa0616720:intron | 40.0% | |
| TAAAGTCTGTCTTGCTCCTA+TGG | - | chr4_2:66734444-66734463 | None:intergenic | 40.0% | |
| !!! | GTTTTGAGAAACAACATCGG+CGG | + | chr4_2:66734728-66734747 | Msa0616720:CDS | 40.0% |
| GAATGTCCACCATATTGAGT+TGG | + | chr4_2:66734919-66734938 | Msa0616720:three_prime_UTR | 40.0% | |
| TAAAATCTCAGTGACCCAGC+CGG | + | chr4_2:66731335-66731354 | Msa0616720:five_prime_UTR | 45.0% | |
| GAATGGAATCGAAGGAGTAG+AGG | - | chr4_2:66731380-66731399 | None:intergenic | 45.0% | |
| TACTCCTTCGATTCCATTCC+AGG | + | chr4_2:66731381-66731400 | Msa0616720:five_prime_UTR | 45.0% | |
| TGAACCTGGAATGGAATCGA+AGG | - | chr4_2:66731388-66731407 | None:intergenic | 45.0% | |
| ! | GAAATCGGCGTGGTAATGAA+TGG | - | chr4_2:66731419-66731438 | None:intergenic | 45.0% |
| ! | GTGCTTCCATGCTTCTGTTT+TGG | - | chr4_2:66731556-66731575 | None:intergenic | 45.0% |
| !! | ACATTTGGTTCTCTGAGGGA+AGG | - | chr4_2:66731650-66731669 | None:intergenic | 45.0% |
| AGGATTGAGGGTGATAGGTT+AGG | + | chr4_2:66732351-66732370 | Msa0616720:intron | 45.0% | |
| !! | TGAAGTACTGGGACATACAC+TGG | + | chr4_2:66732414-66732433 | Msa0616720:intron | 45.0% |
| GATACTAAGACATCCGACAC+TGG | + | chr4_2:66732441-66732460 | Msa0616720:intron | 45.0% | |
| ! | CCAGCATATCAAAGGCACAA+CGG | - | chr4_2:66732672-66732691 | None:intergenic | 45.0% |
| TGAGGATGAGGGGTTAGATT+AGG | + | chr4_2:66732750-66732769 | Msa0616720:intron | 45.0% | |
| TGGCAAGAAAATGCTGCTGA+TGG | + | chr4_2:66732943-66732962 | Msa0616720:CDS | 45.0% | |
| TTCATGTGACTGGAAGGTCA+CGG | + | chr4_2:66733897-66733916 | Msa0616720:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4_2:66733931-66733950 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr4_2:66733964-66733983 | Msa0616720:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr4_2:66733967-66733986 | Msa0616720:intron | 45.0% | |
| !! | CTTTCGTGGTAGTTTGCTGA+TGG | + | chr4_2:66734146-66734165 | Msa0616720:intron | 45.0% |
| TCATGTCTCATGGCTTACCA+TGG | + | chr4_2:66734639-66734658 | Msa0616720:intron | 45.0% | |
| TGAAGCTGTTGAATCATGGG+AGG | + | chr4_2:66734681-66734700 | Msa0616720:CDS | 45.0% | |
| ! | TTTAGTTTAGGCTTCGCCAC+TGG | + | chr4_2:66735020-66735039 | Msa0616720:three_prime_UTR | 45.0% |
| TTAGTTTAGGCTTCGCCACT+GGG | + | chr4_2:66735021-66735040 | Msa0616720:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTTTATCTT+TGG | + | chr4_2:66733727-66733746 | Msa0616720:intron | 5.0% |
| GAAGGAGTAGAGGACAACAG+CGG | - | chr4_2:66731370-66731389 | None:intergenic | 50.0% | |
| GTGGAATTGAGAAATCGGCG+TGG | - | chr4_2:66731429-66731448 | None:intergenic | 50.0% | |
| CCGTTGTGCCTTTGATATGC+TGG | + | chr4_2:66732669-66732688 | Msa0616720:intron | 50.0% | |
| GCATCTGTTGTTGGACCTCT+TGG | + | chr4_2:66732791-66732810 | Msa0616720:intron | 50.0% | |
| GAGTGGAGCTACAAGCGAAA+TGG | + | chr4_2:66732868-66732887 | Msa0616720:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4_2:66733875-66733894 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr4_2:66733898-66733917 | Msa0616720:intron | 50.0% | |
| GGAGGTCAAAGATAACCACG+AGG | + | chr4_2:66734412-66734431 | Msa0616720:CDS | 50.0% | |
| AGTCTGTCTTGCTCCTATGG+CGG | - | chr4_2:66734441-66734460 | None:intergenic | 50.0% | |
| ACAACAGCGGCGTGAGAATC+CGG | - | chr4_2:66731357-66731376 | None:intergenic | 55.0% | |
| AGGACCAGGGAGCTTAACGT+GGG | - | chr4_2:66731630-66731649 | None:intergenic | 55.0% | |
| AAGGACCAGGGAGCTTAACG+TGG | - | chr4_2:66731631-66731650 | None:intergenic | 55.0% | |
| ! | GTTCTCTGAGGGAAGGACCA+GGG | - | chr4_2:66731643-66731662 | None:intergenic | 55.0% |
| GATAGCAGGAGGGGTAACCT+TGG | + | chr4_2:66733855-66733874 | Msa0616720:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4_2:66733910-66733929 | Msa0616720:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr4_2:66734007-66734026 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr4_2:66734008-66734027 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr4_2:66734012-66734031 | Msa0616720:intron | 55.0% |
| GGTACCCACGTTAAGCTCCC+TGG | + | chr4_2:66731623-66731642 | Msa0616720:CDS | 60.0% | |
| ! | GGTTCTCTGAGGGAAGGACC+AGG | - | chr4_2:66731644-66731663 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4_2:66733864-66733883 | Msa0616720:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr4_2:66733980-66733999 | Msa0616720:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr4_2:66734013-66734032 | Msa0616720:intron | 60.0% |
| AACCACGAGGAAGCCGCCAT+AGG | + | chr4_2:66734425-66734444 | Msa0616720:CDS | 60.0% | |
| AGCGGCGTGAGAATCCGGCT+GGG | - | chr4_2:66731352-66731371 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr4_2:66733982-66734001 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr4_2:66733995-66734014 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr4_2:66733996-66734015 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr4_2:66733995-66734014 | Msa0616720:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr4_2:66733996-66734015 | Msa0616720:intron | 65.0% | |
| CTCCTATGGCGGCTTCCTCG+TGG | - | chr4_2:66734430-66734449 | None:intergenic | 65.0% | |
| CAGCGGCGTGAGAATCCGGC+TGG | - | chr4_2:66731353-66731372 | None:intergenic | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr4_2:66733997-66734016 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr4_2:66734001-66734020 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr4_2:66734002-66734021 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66731292 | 66735083 | 66731292 | ID=Msa0616720;Name=Msa0616720 |
| chr4_2 | mRNA | 66731292 | 66735083 | 66731292 | ID=Msa0616720-mRNA-1;Parent=Msa0616720;Name=Msa0616720-mRNA-1;_AED=0.27;_eAED=0.27;_QI=135|0.5|0.57|1|0.83|0.57|7|303|200 |
| chr4_2 | exon | 66731292 | 66731402 | 66731292 | ID=Msa0616720-mRNA-1:exon:18984;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66731494 | 66731732 | 66731494 | ID=Msa0616720-mRNA-1:exon:18985;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66731789 | 66731794 | 66731789 | ID=Msa0616720-mRNA-1:exon:18986;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66731978 | 66731985 | 66731978 | ID=Msa0616720-mRNA-1:exon:18987;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66732869 | 66733021 | 66732869 | ID=Msa0616720-mRNA-1:exon:18988;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66734360 | 66734478 | 66734360 | ID=Msa0616720-mRNA-1:exon:18989;Parent=Msa0616720-mRNA-1 |
| chr4_2 | exon | 66734679 | 66735083 | 66734679 | ID=Msa0616720-mRNA-1:exon:18990;Parent=Msa0616720-mRNA-1 |
| chr4_2 | five_prime_UTR | 66731292 | 66731402 | 66731292 | ID=Msa0616720-mRNA-1:five_prime_utr;Parent=Msa0616720-mRNA-1 |
| chr4_2 | five_prime_UTR | 66731494 | 66731517 | 66731494 | ID=Msa0616720-mRNA-1:five_prime_utr;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66731518 | 66731732 | 66731518 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66731789 | 66731794 | 66731789 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66731978 | 66731985 | 66731978 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66732869 | 66733021 | 66732869 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66734360 | 66734478 | 66734360 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | CDS | 66734679 | 66734780 | 66734679 | ID=Msa0616720-mRNA-1:cds;Parent=Msa0616720-mRNA-1 |
| chr4_2 | three_prime_UTR | 66734781 | 66735083 | 66734781 | ID=Msa0616720-mRNA-1:three_prime_utr;Parent=Msa0616720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
