Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616620 | XP_024630097.1 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 1.13e-139 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616620 | sp|Q558Z3|SSU72_DICDI | 48.500 | 200 | 92 | 4 | 4 | 200 | 23 | 214 | 1.81e-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616620 | A0A396GUT2 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 5.41e-140 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616620 | Msa0616720 | 0.914536 | 1.708987e-84 | -8.615850e-47 |
| Msa0616620 | Msa0902830 | -0.807115 | 5.916214e-50 | -8.615850e-47 |
| Msa0616620 | Msa1036710 | 0.810644 | 1.040168e-50 | -8.615850e-47 |
| Msa0616620 | Msa1148000 | -0.807861 | 4.109334e-50 | -8.615850e-47 |
| Msa0616620 | Msa1445390 | 0.801551 | 8.535803e-49 | -8.615850e-47 |
| Msa0616620 | Msa1449340 | 0.805336 | 1.402358e-49 | -8.615850e-47 |
| Msa0140500 | Msa0616620 | 0.805483 | 1.306082e-49 | -8.615850e-47 |
| Msa0189930 | Msa0616620 | 0.814008 | 1.916749e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616620 | MtrunA17_Chr8g0376231 | 96.500 | 200 | 0 | 1 | 1 | 200 | 1 | 193 | 1.04e-143 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616620 | AT1G73820.2 | 75.500 | 200 | 42 | 1 | 1 | 200 | 17 | 209 | 2.10e-116 | 330 |
| Msa0616620 | AT1G73820.1 | 75.500 | 200 | 42 | 1 | 1 | 200 | 1 | 193 | 3.25e-116 | 328 |
Find 63 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAACATGGTCTCTATTA+TGG | 0.222869 | 4_2:-66527763 | None:intergenic |
| TACTCCTTCGATTCCATTCC+AGG | 0.231215 | 4_2:+66524782 | Msa0616620:five_prime_UTR |
| AACGGTATTGATAGTCAATT+TGG | 0.243908 | 4_2:+66527790 | Msa0616620:CDS |
| GAATCCTGCCAATGCTTAAA+AGG | 0.252032 | 4_2:+66526290 | Msa0616620:CDS |
| GAACCAAATGTCTATGAATT+TGG | 0.253761 | 4_2:+66525060 | Msa0616620:CDS |
| GGGTTCGATGTATCTTCTTA+TGG | 0.256941 | 4_2:+66524997 | Msa0616620:CDS |
| TTCAAACTATCTTATTGATT+TGG | 0.272112 | 4_2:+66528349 | Msa0616620:three_prime_UTR |
| ATGTTTAAGTACAATATATT+GGG | 0.276008 | 4_2:+66528393 | Msa0616620:three_prime_UTR |
| GTGCTTCCATGCTTCTGTTT+TGG | 0.284804 | 4_2:-66524954 | None:intergenic |
| AAGGAATGCAGCTGTGAAAT+TGG | 0.321236 | 4_2:+66526309 | Msa0616620:CDS |
| AATGTTTAAGTACAATATAT+TGG | 0.339732 | 4_2:+66528392 | Msa0616620:three_prime_UTR |
| AAGTAAACACCAACTCAATA+TGG | 0.358883 | 4_2:-66528327 | None:intergenic |
| TTTAGTTTAGGCTTCGCCAC+TGG | 0.384894 | 4_2:+66528419 | Msa0616620:three_prime_UTR |
| TATTAAAATTATTCTTATGT+AGG | 0.387360 | 4_2:+66528460 | Msa0616620:three_prime_UTR |
| GTACCAAATTCATAGACATT+TGG | 0.395982 | 4_2:-66525063 | None:intergenic |
| TGCATATATAGTTAGTTGTC+TGG | 0.400076 | 4_2:+66528270 | Msa0616620:three_prime_UTR |
| TAAAGTCTGTCTTGCTCCTA+TGG | 0.406647 | 4_2:-66527840 | None:intergenic |
| GATGTATCTTCTTATGGAAC+AGG | 0.408399 | 4_2:+66525003 | Msa0616620:CDS |
| ACAATAGCGGCGTGAGAATC+CGG | 0.410652 | 4_2:-66524755 | None:intergenic |
| CAACTAACTATATATGCATT+TGG | 0.439199 | 4_2:-66528265 | None:intergenic |
| GAGTGGAGCTACAAGCGAAA+TGG | 0.467833 | 4_2:+66526268 | Msa0616620:intron |
| AGATTGAAGCTGTTGAATCA+TGG | 0.474304 | 4_2:+66528076 | Msa0616620:intron |
| GTATTTGATATGGTTGTTGA+AGG | 0.475037 | 4_2:+66526400 | Msa0616620:CDS |
| ATATAGTTAGTTGTCTGGAT+TGG | 0.481476 | 4_2:+66528275 | Msa0616620:three_prime_UTR |
| TTAGTTTAGGCTTCGCCACT+GGG | 0.486456 | 4_2:+66528420 | Msa0616620:three_prime_UTR |
| ACTAGCAATAACATCATCAA+TGG | 0.487232 | 4_2:-66528106 | None:intergenic |
| ATTGATTTGGAGTTTAGTTG+AGG | 0.495903 | 4_2:+66528362 | Msa0616620:three_prime_UTR |
| TAGCGGCGTGAGAATCCGGC+TGG | 0.500596 | 4_2:-66524751 | None:intergenic |
| TCATCAAGCATATATTTGTA+AGG | 0.512106 | 4_2:-66525087 | None:intergenic |
| GATTAATGGTGAACCTGGAA+TGG | 0.521626 | 4_2:-66524795 | None:intergenic |
| TGAAATTGGCACCTCAAAGA+TGG | 0.526468 | 4_2:+66526323 | Msa0616620:CDS |
| GATTGAAGCTGTTGAATCAT+GGG | 0.531323 | 4_2:+66528077 | Msa0616620:intron |
| GGTTCTCTGAGGGAAGGACC+AGG | 0.532924 | 4_2:-66525042 | None:intergenic |
| GTTATGCATTGAAATTTAGT+CGG | 0.561438 | 4_2:+66528233 | Msa0616620:three_prime_UTR |
| GGTATTGATAGTCAATTTGG+AGG | 0.563161 | 4_2:+66527793 | Msa0616620:CDS |
| TGTTTAAGTACAATATATTG+GGG | 0.563597 | 4_2:+66528394 | Msa0616620:three_prime_UTR |
| GGTACCCACGTTAAGCTCCC+TGG | 0.567847 | 4_2:+66525024 | Msa0616620:CDS |
| CATAGACATTTGGTTCTCTG+AGG | 0.569922 | 4_2:-66525053 | None:intergenic |
| ATAGACATTTGGTTCTCTGA+GGG | 0.571121 | 4_2:-66525052 | None:intergenic |
| TAAAATCTCAGTGACCCAGC+CGG | 0.588271 | 4_2:+66524736 | Msa0616620:five_prime_UTR |
| ATCCAACCAAAACAGAAGCA+TGG | 0.589136 | 4_2:+66524948 | Msa0616620:CDS |
| TTTAAGTACAATATATTGGG+GGG | 0.589702 | 4_2:+66528396 | Msa0616620:three_prime_UTR |
| GAATGTCCACCATATTGAGT+TGG | 0.593076 | 4_2:+66528318 | Msa0616620:three_prime_UTR |
| GAATGGAATCGAAGGAGTAG+AGG | 0.594631 | 4_2:-66524778 | None:intergenic |
| AATGAAGTTTCGTTACGCCA+TGG | 0.597155 | 4_2:+66524918 | Msa0616620:exon |
| AAGGACCAGGGAGCTTAACG+TGG | 0.600033 | 4_2:-66525029 | None:intergenic |
| ACATTTGGTTCTCTGAGGGA+AGG | 0.600394 | 4_2:-66525048 | None:intergenic |
| AACCACGAGGAAGCCGCCAT+AGG | 0.612265 | 4_2:+66527824 | Msa0616620:CDS |
| TGGCAAGAAAATGCTGCTGA+TGG | 0.614390 | 4_2:+66526343 | Msa0616620:CDS |
| CTCCTATGGCGGCTTCCTCG+TGG | 0.618433 | 4_2:-66527826 | None:intergenic |
| TAAACACCAACTCAATATGG+TGG | 0.626700 | 4_2:-66528324 | None:intergenic |
| GTTTAAGTACAATATATTGG+GGG | 0.626911 | 4_2:+66528395 | Msa0616620:three_prime_UTR |
| GTTCTCTGAGGGAAGGACCA+GGG | 0.632137 | 4_2:-66525041 | None:intergenic |
| TGAACCTGGAATGGAATCGA+AGG | 0.638470 | 4_2:-66524786 | None:intergenic |
| AGTCTGTCTTGCTCCTATGG+CGG | 0.641994 | 4_2:-66527837 | None:intergenic |
| TTGGTTGGATGAACAAACCA+TGG | 0.652936 | 4_2:-66524935 | None:intergenic |
| AGCGGCGTGAGAATCCGGCT+GGG | 0.655903 | 4_2:-66524750 | None:intergenic |
| TGAAGCTGTTGAATCATGGG+AGG | 0.684017 | 4_2:+66528080 | Msa0616620:CDS |
| TGCTGATGGCATATTTGATG+TGG | 0.692771 | 4_2:+66526357 | Msa0616620:CDS |
| AGGACCAGGGAGCTTAACGT+GGG | 0.701054 | 4_2:-66525028 | None:intergenic |
| TATTCATTAAACATTCCCAG+TGG | 0.704848 | 4_2:-66528435 | None:intergenic |
| GAAGGAGTAGAGGACAATAG+CGG | 0.738462 | 4_2:-66524768 | None:intergenic |
| GGAGGTCAAAGATAACCACG+AGG | 0.849826 | 4_2:+66527811 | Msa0616620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATGCAAATAAAAAA+AGG | - | chr4_2:66525141-66525160 | None:intergenic | 10.0% |
| !! | AAATAATTAAGTAAACAAAA+GGG | - | chr4_2:66525167-66525186 | None:intergenic | 10.0% |
| !! | AAAATAATTAAGTAAACAAA+AGG | - | chr4_2:66525168-66525187 | None:intergenic | 10.0% |
| !!! | TACTTAATTATTTTAGTTTT+AGG | + | chr4_2:66525174-66525193 | Msa0616620:intron | 10.0% |
| !!! | AAATTTAAGTTTTAGTTTTA+TGG | + | chr4_2:66525293-66525312 | Msa0616620:intron | 10.0% |
| !!! | AATTTAAGTTTTAGTTTTAT+GGG | + | chr4_2:66525294-66525313 | Msa0616620:intron | 10.0% |
| !!! | TTTTGTTTTAAAAGAATTTT+AGG | + | chr4_2:66525682-66525701 | Msa0616620:intron | 10.0% |
| !! | AATGTGATATAAAAAAAAAA+GGG | - | chr4_2:66527441-66527460 | None:intergenic | 10.0% |
| !!! | GAGTTATATATTTTTAATTT+TGG | + | chr4_2:66527991-66528010 | Msa0616620:intron | 10.0% |
| !! | AATCAATATATTGAAAAAAG+TGG | - | chr4_2:66524849-66524868 | None:intergenic | 15.0% |
| !!! | TCAATATATTGATTCTTATT+AGG | + | chr4_2:66524855-66524874 | Msa0616620:intron | 15.0% |
| !!! | ATTTAAGTTTTAGTTTTATG+GGG | + | chr4_2:66525295-66525314 | Msa0616620:intron | 15.0% |
| !! | AAATTAAAAACAAGCAAAAT+TGG | - | chr4_2:66525342-66525361 | None:intergenic | 15.0% |
| !! | TGAAAATGAAAATTTAGATT+TGG | + | chr4_2:66525609-66525628 | Msa0616620:intron | 15.0% |
| !! | GAAAATGAAAATTTAGATTT+GGG | + | chr4_2:66525610-66525629 | Msa0616620:intron | 15.0% |
| !! | AAAATGAAAATTTAGATTTG+GGG | + | chr4_2:66525611-66525630 | Msa0616620:intron | 15.0% |
| !!! | AAAAAGAAAATGAAATTTTC+AGG | + | chr4_2:66526010-66526029 | Msa0616620:intron | 15.0% |
| !! | CAATGTGATATAAAAAAAAA+AGG | - | chr4_2:66527442-66527461 | None:intergenic | 15.0% |
| !!! | GATTTTACTATTTAAGTTAT+TGG | + | chr4_2:66527586-66527605 | Msa0616620:intron | 15.0% |
| !!! | TTTTTGAAACAAAATTTCAT+AGG | - | chr4_2:66528198-66528217 | None:intergenic | 15.0% |
| !! | AATGTTTAAGTACAATATAT+TGG | + | chr4_2:66528392-66528411 | Msa0616620:three_prime_UTR | 15.0% |
| !! | ATGTTTAAGTACAATATATT+GGG | + | chr4_2:66528393-66528412 | Msa0616620:three_prime_UTR | 15.0% |
| !!! | TTTAGTTTTAGTAGAATTTC+AGG | + | chr4_2:66525364-66525383 | Msa0616620:intron | 20.0% |
| !!! | AGATTTGTGTATTTTTCATA+AGG | + | chr4_2:66525420-66525439 | Msa0616620:intron | 20.0% |
| !!! | ATTAACATTAATTTGTCTAC+AGG | + | chr4_2:66525532-66525551 | Msa0616620:intron | 20.0% |
| !! | AAATGAAAATTTAGATTTGG+GGG | + | chr4_2:66525612-66525631 | Msa0616620:intron | 20.0% |
| !! | TGATGATACTAAGAAATATT+GGG | + | chr4_2:66526116-66526135 | Msa0616620:intron | 20.0% |
| !!! | TGAAGAAAAAGTATTTGATA+TGG | + | chr4_2:66526390-66526409 | Msa0616620:CDS | 20.0% |
| !! | TGATGTTATAAATAAGTGAT+TGG | + | chr4_2:66526924-66526943 | Msa0616620:intron | 20.0% |
| !!! | TTTTTTCAGACAAAAAGTTA+AGG | + | chr4_2:66527621-66527640 | Msa0616620:intron | 20.0% |
| !!! | TTTTTCAGACAAAAAGTTAA+GGG | + | chr4_2:66527622-66527641 | Msa0616620:intron | 20.0% |
| !! | AGACATGAAAATATTAAAAC+AGG | - | chr4_2:66528026-66528045 | None:intergenic | 20.0% |
| !!! | TTTAATATTTTCATGTCTCA+TGG | + | chr4_2:66528028-66528047 | Msa0616620:intron | 20.0% |
| !!! | AGTTGTATAATTTTAGTAGA+AGG | - | chr4_2:66528172-66528191 | None:intergenic | 20.0% |
| !!! | TTCAAACTATCTTATTGATT+TGG | + | chr4_2:66528349-66528368 | Msa0616620:three_prime_UTR | 20.0% |
| !! | TGTTTAAGTACAATATATTG+GGG | + | chr4_2:66528394-66528413 | Msa0616620:three_prime_UTR | 20.0% |
| ! | AAAAAGTGGAATTGAGAAAT+CGG | - | chr4_2:66524835-66524854 | None:intergenic | 25.0% |
| !! | ACTTTCTTTTCAAAAGACAA+GGG | + | chr4_2:66524977-66524996 | Msa0616620:CDS | 25.0% |
| ! | TCATCAAGCATATATTTGTA+AGG | - | chr4_2:66525090-66525109 | None:intergenic | 25.0% |
| ! | TAAAAAAAGGATACAGTTCA+GGG | - | chr4_2:66525128-66525147 | None:intergenic | 25.0% |
| ! | ATAAAAAAAGGATACAGTTC+AGG | - | chr4_2:66525129-66525148 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAACAATCAAAA+GGG | - | chr4_2:66525275-66525294 | None:intergenic | 25.0% |
| ! | TTTCAGCTAAAACAATCAAA+AGG | - | chr4_2:66525276-66525295 | None:intergenic | 25.0% |
| ! | TCATAAGGATTTATGATGAT+AGG | + | chr4_2:66525435-66525454 | Msa0616620:intron | 25.0% |
| ! | ATTAATGTTAATATCGTGTC+TGG | - | chr4_2:66525524-66525543 | None:intergenic | 25.0% |
| ! | TCAGCTAAAAAAAATCGAAA+GGG | - | chr4_2:66525592-66525611 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAAAAAATCGAA+AGG | - | chr4_2:66525593-66525612 | None:intergenic | 25.0% |
| ! | AATGAAAATTTAGATTTGGG+GGG | + | chr4_2:66525613-66525632 | Msa0616620:intron | 25.0% |
| ! | TTAGGATTTAGTGAATAGTT+TGG | + | chr4_2:66525769-66525788 | Msa0616620:intron | 25.0% |
| ! | TAGGATTTAGTGAATAGTTT+GGG | + | chr4_2:66525770-66525789 | Msa0616620:intron | 25.0% |
| !! | TGTATAATCTATGAAGTACT+GGG | + | chr4_2:66525803-66525822 | Msa0616620:intron | 25.0% |
| ! | CTGATGATACTAAGAAATAT+TGG | + | chr4_2:66526115-66526134 | Msa0616620:intron | 25.0% |
| ! | GATGATACTAAGAAATATTG+GGG | + | chr4_2:66526117-66526136 | Msa0616620:intron | 25.0% |
| ! | TACAAAACAAGAATTCGAAA+TGG | - | chr4_2:66526222-66526241 | None:intergenic | 25.0% |
| !!! | TTTCGAATTCTTGTTTTGTA+TGG | + | chr4_2:66526222-66526241 | Msa0616620:intron | 25.0% |
| ! | AAAAGGAGTAAAAAAGACAA+AGG | - | chr4_2:66526431-66526450 | None:intergenic | 25.0% |
| ! | TTAGATCAATCAAAGAGAAA+AGG | - | chr4_2:66526448-66526467 | None:intergenic | 25.0% |
| ! | TTTCTGTAATGAATCAAGAT+AGG | + | chr4_2:66526757-66526776 | Msa0616620:intron | 25.0% |
| !! | AGTTGCATTTTATATCTTAG+TGG | + | chr4_2:66526827-66526846 | Msa0616620:intron | 25.0% |
| ! | TAACTAATGAGTCATCATAA+TGG | - | chr4_2:66526890-66526909 | None:intergenic | 25.0% |
| !! | ATGTTTAGAGTAGTTAGTTA+TGG | + | chr4_2:66526988-66527007 | Msa0616620:intron | 25.0% |
| !! | AACTGTTATGAACAACTTTT+TGG | - | chr4_2:66527059-66527078 | None:intergenic | 25.0% |
| ! | ATAAAACATGGTCTCTATTA+TGG | - | chr4_2:66527766-66527785 | None:intergenic | 25.0% |
| !!! | AGACCATGTTTTATTGAAAA+CGG | + | chr4_2:66527772-66527791 | Msa0616620:CDS | 25.0% |
| !! | ATACCGTTTTCAATAAAACA+TGG | - | chr4_2:66527778-66527797 | None:intergenic | 25.0% |
| ! | GTTATGCATTGAAATTTAGT+CGG | + | chr4_2:66528233-66528252 | Msa0616620:three_prime_UTR | 25.0% |
| ! | CAACTAACTATATATGCATT+TGG | - | chr4_2:66528268-66528287 | None:intergenic | 25.0% |
| ! | GTTTAAGTACAATATATTGG+GGG | + | chr4_2:66528395-66528414 | Msa0616620:three_prime_UTR | 25.0% |
| ! | TTTAAGTACAATATATTGGG+GGG | + | chr4_2:66528396-66528415 | Msa0616620:three_prime_UTR | 25.0% |
| ! | CACTTTCTTTTCAAAAGACA+AGG | + | chr4_2:66524976-66524995 | Msa0616620:CDS | 30.0% |
| GAACCAAATGTCTATGAATT+TGG | + | chr4_2:66525060-66525079 | Msa0616620:CDS | 30.0% | |
| GTACCAAATTCATAGACATT+TGG | - | chr4_2:66525066-66525085 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTAAGCATAAGTG+AGG | + | chr4_2:66525196-66525215 | Msa0616620:intron | 30.0% |
| AGGATTTATGATGATAGGTT+AGG | + | chr4_2:66525440-66525459 | Msa0616620:intron | 30.0% | |
| TTAGGATTGAATGCATAGTA+TGG | + | chr4_2:66525458-66525477 | Msa0616620:intron | 30.0% | |
| TAGGATTGAATGCATAGTAT+GGG | + | chr4_2:66525459-66525478 | Msa0616620:intron | 30.0% | |
| ! | TACAGGAAGATGTGTATTTT+AGG | + | chr4_2:66525549-66525568 | Msa0616620:intron | 30.0% |
| GAATTGTGTGTTTCTCATAA+AGG | + | chr4_2:66525731-66525750 | Msa0616620:intron | 30.0% | |
| TGTTTCTCATAAAGGATTGA+GGG | + | chr4_2:66525739-66525758 | Msa0616620:intron | 30.0% | |
| TGAATAGTTTGGGAAAAAGA+TGG | + | chr4_2:66525780-66525799 | Msa0616620:intron | 30.0% | |
| GTGTATAATCTATGAAGTAC+TGG | + | chr4_2:66525802-66525821 | Msa0616620:intron | 30.0% | |
| ! | AATAATTGAGTTGTCAGTGT+CGG | + | chr4_2:66525904-66525923 | Msa0616620:intron | 30.0% |
| ! | TATTGGGGATTTTGTAATTG+AGG | + | chr4_2:66526132-66526151 | Msa0616620:intron | 30.0% |
| ! | GATTTTGTAATTGAGGATGA+GGG | + | chr4_2:66526139-66526158 | Msa0616620:intron | 30.0% |
| ! | ATTTTGTAATTGAGGATGAG+GGG | + | chr4_2:66526140-66526159 | Msa0616620:intron | 30.0% |
| !!! | TCTTGTTTTGTATGGTGAAA+TGG | + | chr4_2:66526230-66526249 | Msa0616620:intron | 30.0% |
| GTATTTGATATGGTTGTTGA+AGG | + | chr4_2:66526400-66526419 | Msa0616620:CDS | 30.0% | |
| GTGAAGACGAATAAAAAGTT+TGG | - | chr4_2:66526520-66526539 | None:intergenic | 30.0% | |
| ATTGTAGAGAAAACTCTTTG+AGG | + | chr4_2:66526545-66526564 | Msa0616620:intron | 30.0% | |
| CTACATAGTTGCAATTGTTA+TGG | + | chr4_2:66526680-66526699 | Msa0616620:intron | 30.0% | |
| TAATCAGTAGCAAGATACAT+AGG | + | chr4_2:66526734-66526753 | Msa0616620:intron | 30.0% | |
| ! | TAGGCCTAAACTATTTTCTT+GGG | - | chr4_2:66526783-66526802 | None:intergenic | 30.0% |
| ! | TTAGGCCTAAACTATTTTCT+TGG | - | chr4_2:66526784-66526803 | None:intergenic | 30.0% |
| ! | TGTTATATCACATTGATAGC+AGG | + | chr4_2:66527240-66527259 | Msa0616620:intron | 30.0% |
| !! | TAAAGTTGTTTTCATGTGAC+TGG | + | chr4_2:66527286-66527305 | Msa0616620:intron | 30.0% |
| ATAAAAAAAAAAGGGCAACC+CGG | - | chr4_2:66527433-66527452 | None:intergenic | 30.0% | |
| TTTCATATACAACACTTTCG+TGG | + | chr4_2:66527531-66527550 | Msa0616620:intron | 30.0% | |
| !! | AACGGTATTGATAGTCAATT+TGG | + | chr4_2:66527790-66527809 | Msa0616620:CDS | 30.0% |
| ! | ACAGACTTTAGATTTTTGTC+AGG | + | chr4_2:66527853-66527872 | Msa0616620:CDS | 30.0% |
| GAACATAGATACTAATGCAA+TGG | + | chr4_2:66527942-66527961 | Msa0616620:intron | 30.0% | |
| CTTACCATGGATATATTTCA+TGG | + | chr4_2:66528051-66528070 | Msa0616620:intron | 30.0% | |
| CTATCCATGAAATATATCCA+TGG | - | chr4_2:66528058-66528077 | None:intergenic | 30.0% | |
| ACTAGCAATAACATCATCAA+TGG | - | chr4_2:66528109-66528128 | None:intergenic | 30.0% | |
| !!! | CTAGTTTTGAGAAACAACAT+CGG | + | chr4_2:66528124-66528143 | Msa0616620:CDS | 30.0% |
| TGCATATATAGTTAGTTGTC+TGG | + | chr4_2:66528270-66528289 | Msa0616620:three_prime_UTR | 30.0% | |
| ATATAGTTAGTTGTCTGGAT+TGG | + | chr4_2:66528275-66528294 | Msa0616620:three_prime_UTR | 30.0% | |
| AAGTAAACACCAACTCAATA+TGG | - | chr4_2:66528330-66528349 | None:intergenic | 30.0% | |
| !! | ATTGATTTGGAGTTTAGTTG+AGG | + | chr4_2:66528362-66528381 | Msa0616620:three_prime_UTR | 30.0% |
| TATTCATTAAACATTCCCAG+TGG | - | chr4_2:66528438-66528457 | None:intergenic | 30.0% | |
| !! | CGTGGTAATGAATGGATTAA+TGG | - | chr4_2:66524812-66524831 | None:intergenic | 35.0% |
| GATGTATCTTCTTATGGAAC+AGG | + | chr4_2:66525003-66525022 | Msa0616620:CDS | 35.0% | |
| !! | ATAGACATTTGGTTCTCTGA+GGG | - | chr4_2:66525055-66525074 | None:intergenic | 35.0% |
| ATGCATAGTATGGGAAACAT+TGG | + | chr4_2:66525468-66525487 | Msa0616620:intron | 35.0% | |
| GTGTATAATCTACGAAGTTC+TGG | + | chr4_2:66525490-66525509 | Msa0616620:intron | 35.0% | |
| GTTAATATCGTGTCTGGTAT+CGG | - | chr4_2:66525518-66525537 | None:intergenic | 35.0% | |
| GTGTTTCTCATAAAGGATTG+AGG | + | chr4_2:66525738-66525757 | Msa0616620:intron | 35.0% | |
| ATCTGACACTGGTAGTAATT+TGG | + | chr4_2:66525852-66525871 | Msa0616620:intron | 35.0% | |
| TCTGACACTGGTAGTAATTT+GGG | + | chr4_2:66525853-66525872 | Msa0616620:intron | 35.0% | |
| TAGTAATTTGGGAATGACTC+TGG | + | chr4_2:66525864-66525883 | Msa0616620:intron | 35.0% | |
| TCACTTTCGATCAGAAGTAA+CGG | + | chr4_2:66525936-66525955 | Msa0616620:intron | 35.0% | |
| CAAAATTGCCAGCATATCAA+AGG | - | chr4_2:66526080-66526099 | None:intergenic | 35.0% | |
| ! | TGATATGCTGGCAATTTTGT+TGG | + | chr4_2:66526081-66526100 | Msa0616620:intron | 35.0% |
| ! | GGATTTTGTAATTGAGGATG+AGG | + | chr4_2:66526138-66526157 | Msa0616620:intron | 35.0% |
| TAGGCCCAAGAAAATAGTTT+AGG | + | chr4_2:66526776-66526795 | Msa0616620:intron | 35.0% | |
| ATCATAGTCCTTAGCTACTT+AGG | - | chr4_2:66526802-66526821 | None:intergenic | 35.0% | |
| ! | GAGTCATATCATGTTCTAGA+AGG | + | chr4_2:66526852-66526871 | Msa0616620:intron | 35.0% |
| ! | CTTTTAACAGAACATGCGTT+TGG | + | chr4_2:66527173-66527192 | Msa0616620:intron | 35.0% |
| ! | TATATCACATTGATAGCAGG+AGG | + | chr4_2:66527243-66527262 | Msa0616620:intron | 35.0% |
| ! | ATATCACATTGATAGCAGGA+GGG | + | chr4_2:66527244-66527263 | Msa0616620:intron | 35.0% |
| AGCCTCTTGTGTAAAAAACA+GGG | + | chr4_2:66527336-66527355 | Msa0616620:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACACAAG+AGG | - | chr4_2:66527341-66527360 | None:intergenic | 35.0% |
| CTTGTGTAAAAAACAGGGTA+AGG | + | chr4_2:66527341-66527360 | Msa0616620:intron | 35.0% | |
| AAGTTAAGGGCAAGATACAT+AGG | + | chr4_2:66527635-66527654 | Msa0616620:intron | 35.0% | |
| !! | GGTATTGATAGTCAATTTGG+AGG | + | chr4_2:66527793-66527812 | Msa0616620:CDS | 35.0% |
| ! | GACTTTAGATTTTTGTCAGG+AGG | + | chr4_2:66527856-66527875 | Msa0616620:CDS | 35.0% |
| AGATTGAAGCTGTTGAATCA+TGG | + | chr4_2:66528076-66528095 | Msa0616620:intron | 35.0% | |
| GATTGAAGCTGTTGAATCAT+GGG | + | chr4_2:66528077-66528096 | Msa0616620:intron | 35.0% | |
| TAAACACCAACTCAATATGG+TGG | - | chr4_2:66528327-66528346 | None:intergenic | 35.0% | |
| ! | TATATTGGGGGGTTTAGTTT+AGG | + | chr4_2:66528407-66528426 | Msa0616620:three_prime_UTR | 35.0% |
| GATTAATGGTGAACCTGGAA+TGG | - | chr4_2:66524798-66524817 | None:intergenic | 40.0% | |
| !! | GAATGGATTAATGGTGAACC+TGG | - | chr4_2:66524803-66524822 | None:intergenic | 40.0% |
| AATGAAGTTTCGTTACGCCA+TGG | + | chr4_2:66524918-66524937 | Msa0616620:exon | 40.0% | |
| TTGGTTGGATGAACAAACCA+TGG | - | chr4_2:66524938-66524957 | None:intergenic | 40.0% | |
| ATCCAACCAAAACAGAAGCA+TGG | + | chr4_2:66524948-66524967 | Msa0616620:CDS | 40.0% | |
| !!! | TTCCATGCTTCTGTTTTGGT+TGG | - | chr4_2:66524953-66524972 | None:intergenic | 40.0% |
| GGGTTCGATGTATCTTCTTA+TGG | + | chr4_2:66524997-66525016 | Msa0616620:CDS | 40.0% | |
| !! | CATAGACATTTGGTTCTCTG+AGG | - | chr4_2:66525056-66525075 | None:intergenic | 40.0% |
| CATAAAGGATTGAGGGTGAT+AGG | + | chr4_2:66525746-66525765 | Msa0616620:intron | 40.0% | |
| GATACTAAGACATCTGACAC+TGG | + | chr4_2:66525841-66525860 | Msa0616620:intron | 40.0% | |
| TAATTTGGGAATGACTCTGG+TGG | + | chr4_2:66525867-66525886 | Msa0616620:intron | 40.0% | |
| CTTCTGATCGAAAGTGAATC+AGG | - | chr4_2:66525933-66525952 | None:intergenic | 40.0% | |
| ! | GAGTGTTTTGCATCTGTTGT+TGG | + | chr4_2:66526182-66526201 | Msa0616620:intron | 40.0% |
| TTCGAAATGGCATTTCCAAG+AGG | - | chr4_2:66526209-66526228 | None:intergenic | 40.0% | |
| GGATGTATCCTTAACAAGAG+TGG | + | chr4_2:66526251-66526270 | Msa0616620:intron | 40.0% | |
| TTGTAGCTCCACTCTTGTTA+AGG | - | chr4_2:66526262-66526281 | None:intergenic | 40.0% | |
| GAATCCTGCCAATGCTTAAA+AGG | + | chr4_2:66526290-66526309 | Msa0616620:CDS | 40.0% | |
| !!! | CATTCCTTTTAAGCATTGGC+AGG | - | chr4_2:66526297-66526316 | None:intergenic | 40.0% |
| ! | GCTGCATTCCTTTTAAGCAT+TGG | - | chr4_2:66526301-66526320 | None:intergenic | 40.0% |
| AAGGAATGCAGCTGTGAAAT+TGG | + | chr4_2:66526309-66526328 | Msa0616620:CDS | 40.0% | |
| TGAAATTGGCACCTCAAAGA+TGG | + | chr4_2:66526323-66526342 | Msa0616620:CDS | 40.0% | |
| ! | GCATTTTCTTGCCATCTTTG+AGG | - | chr4_2:66526337-66526356 | None:intergenic | 40.0% |
| TGCTGATGGCATATTTGATG+TGG | + | chr4_2:66526357-66526376 | Msa0616620:CDS | 40.0% | |
| ! | ACTCTTTGAGGAGCATGTTT+CGG | + | chr4_2:66526557-66526576 | Msa0616620:intron | 40.0% |
| AGTTTAGGCCTAAGTAGCTA+AGG | + | chr4_2:66526791-66526810 | Msa0616620:intron | 40.0% | |
| ! | TTTGGAGTCACAACTTTGCA+AGG | + | chr4_2:66527191-66527210 | Msa0616620:intron | 40.0% |
| ! | TATCACATTGATAGCAGGAG+GGG | + | chr4_2:66527245-66527264 | Msa0616620:intron | 40.0% |
| !! | GTTGTTTTCATGTGACTGGA+AGG | + | chr4_2:66527290-66527309 | Msa0616620:intron | 40.0% |
| CAGCCTCTTGTGTAAAAAAC+AGG | + | chr4_2:66527335-66527354 | Msa0616620:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4_2:66527367-66527386 | Msa0616620:intron | 40.0% | |
| GCAAGATACATAGGTTTCTC+TGG | + | chr4_2:66527644-66527663 | Msa0616620:intron | 40.0% | |
| GGAATGATTTCTGTACGCTT+TGG | + | chr4_2:66527665-66527684 | Msa0616620:intron | 40.0% | |
| TAAAGTCTGTCTTGCTCCTA+TGG | - | chr4_2:66527843-66527862 | None:intergenic | 40.0% | |
| !!! | GTTTTGAGAAACAACATCGG+CGG | + | chr4_2:66528127-66528146 | Msa0616620:CDS | 40.0% |
| GAATGTCCACCATATTGAGT+TGG | + | chr4_2:66528318-66528337 | Msa0616620:three_prime_UTR | 40.0% | |
| TAAAATCTCAGTGACCCAGC+CGG | + | chr4_2:66524736-66524755 | Msa0616620:five_prime_UTR | 45.0% | |
| GAAGGAGTAGAGGACAATAG+CGG | - | chr4_2:66524771-66524790 | None:intergenic | 45.0% | |
| GAATGGAATCGAAGGAGTAG+AGG | - | chr4_2:66524781-66524800 | None:intergenic | 45.0% | |
| TACTCCTTCGATTCCATTCC+AGG | + | chr4_2:66524782-66524801 | Msa0616620:five_prime_UTR | 45.0% | |
| TGAACCTGGAATGGAATCGA+AGG | - | chr4_2:66524789-66524808 | None:intergenic | 45.0% | |
| ! | GAAATCGGCGTGGTAATGAA+TGG | - | chr4_2:66524820-66524839 | None:intergenic | 45.0% |
| ! | GTGCTTCCATGCTTCTGTTT+TGG | - | chr4_2:66524957-66524976 | None:intergenic | 45.0% |
| !! | ACATTTGGTTCTCTGAGGGA+AGG | - | chr4_2:66525051-66525070 | None:intergenic | 45.0% |
| AGGATTGAGGGTGATAGGTT+AGG | + | chr4_2:66525751-66525770 | Msa0616620:intron | 45.0% | |
| !! | TGAAGTACTGGGACATACAC+TGG | + | chr4_2:66525814-66525833 | Msa0616620:intron | 45.0% |
| ! | CCAGCATATCAAAGGCACAA+CGG | - | chr4_2:66526072-66526091 | None:intergenic | 45.0% |
| TGAGGATGAGGGGTTAGATT+AGG | + | chr4_2:66526150-66526169 | Msa0616620:intron | 45.0% | |
| TGGCAAGAAAATGCTGCTGA+TGG | + | chr4_2:66526343-66526362 | Msa0616620:CDS | 45.0% | |
| TTCATGTGACTGGAAGGTCA+CGG | + | chr4_2:66527296-66527315 | Msa0616620:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4_2:66527330-66527349 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | + | chr4_2:66527363-66527382 | Msa0616620:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr4_2:66527366-66527385 | Msa0616620:intron | 45.0% | |
| !! | CTTTCGTGGTAGTTTGCTGA+TGG | + | chr4_2:66527545-66527564 | Msa0616620:intron | 45.0% |
| TCATGTCTCATGGCTTACCA+TGG | + | chr4_2:66528038-66528057 | Msa0616620:intron | 45.0% | |
| TGAAGCTGTTGAATCATGGG+AGG | + | chr4_2:66528080-66528099 | Msa0616620:CDS | 45.0% | |
| ! | TTTAGTTTAGGCTTCGCCAC+TGG | + | chr4_2:66528419-66528438 | Msa0616620:three_prime_UTR | 45.0% |
| TTAGTTTAGGCTTCGCCACT+GGG | + | chr4_2:66528420-66528439 | Msa0616620:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTTTATCTT+TGG | + | chr4_2:66527126-66527145 | Msa0616620:intron | 5.0% |
| ACAATAGCGGCGTGAGAATC+CGG | - | chr4_2:66524758-66524777 | None:intergenic | 50.0% | |
| GTGGAATTGAGAAATCGGCG+TGG | - | chr4_2:66524830-66524849 | None:intergenic | 50.0% | |
| CCGTTGTGCCTTTGATATGC+TGG | + | chr4_2:66526069-66526088 | Msa0616620:intron | 50.0% | |
| GCATCTGTTGTTGGACCTCT+TGG | + | chr4_2:66526191-66526210 | Msa0616620:intron | 50.0% | |
| GAGTGGAGCTACAAGCGAAA+TGG | + | chr4_2:66526268-66526287 | Msa0616620:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4_2:66527274-66527293 | None:intergenic | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr4_2:66527297-66527316 | Msa0616620:intron | 50.0% | |
| GGAGGTCAAAGATAACCACG+AGG | + | chr4_2:66527811-66527830 | Msa0616620:CDS | 50.0% | |
| AGTCTGTCTTGCTCCTATGG+CGG | - | chr4_2:66527840-66527859 | None:intergenic | 50.0% | |
| AGGACCAGGGAGCTTAACGT+GGG | - | chr4_2:66525031-66525050 | None:intergenic | 55.0% | |
| AAGGACCAGGGAGCTTAACG+TGG | - | chr4_2:66525032-66525051 | None:intergenic | 55.0% | |
| ! | GTTCTCTGAGGGAAGGACCA+GGG | - | chr4_2:66525044-66525063 | None:intergenic | 55.0% |
| GATAGCAGGAGGGGTAACCT+TGG | + | chr4_2:66527254-66527273 | Msa0616620:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4_2:66527309-66527328 | Msa0616620:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr4_2:66527406-66527425 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr4_2:66527407-66527426 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr4_2:66527411-66527430 | Msa0616620:intron | 55.0% |
| GGTACCCACGTTAAGCTCCC+TGG | + | chr4_2:66525024-66525043 | Msa0616620:CDS | 60.0% | |
| ! | GGTTCTCTGAGGGAAGGACC+AGG | - | chr4_2:66525045-66525064 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4_2:66527263-66527282 | Msa0616620:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr4_2:66527379-66527398 | Msa0616620:intron | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr4_2:66527412-66527431 | Msa0616620:intron | 60.0% |
| AACCACGAGGAAGCCGCCAT+AGG | + | chr4_2:66527824-66527843 | Msa0616620:CDS | 60.0% | |
| AGCGGCGTGAGAATCCGGCT+GGG | - | chr4_2:66524753-66524772 | None:intergenic | 65.0% | |
| TAGCGGCGTGAGAATCCGGC+TGG | - | chr4_2:66524754-66524773 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr4_2:66527381-66527400 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr4_2:66527394-66527413 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr4_2:66527395-66527414 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr4_2:66527394-66527413 | Msa0616620:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr4_2:66527395-66527414 | Msa0616620:intron | 65.0% | |
| CTCCTATGGCGGCTTCCTCG+TGG | - | chr4_2:66527829-66527848 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr4_2:66527396-66527415 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr4_2:66527400-66527419 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr4_2:66527401-66527420 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66524693 | 66528482 | 66524693 | ID=Msa0616620;Name=Msa0616620 |
| chr4_2 | mRNA | 66524693 | 66528482 | 66524693 | ID=Msa0616620-mRNA-1;Parent=Msa0616620;Name=Msa0616620-mRNA-1;_AED=0.27;_eAED=0.27;_QI=135|0.5|0.57|1|0.33|0.28|7|303|200 |
| chr4_2 | exon | 66524693 | 66524803 | 66524693 | ID=Msa0616620-mRNA-1:exon:18945;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66524895 | 66525133 | 66524895 | ID=Msa0616620-mRNA-1:exon:18946;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66525190 | 66525195 | 66525190 | ID=Msa0616620-mRNA-1:exon:18947;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66525378 | 66525385 | 66525378 | ID=Msa0616620-mRNA-1:exon:18948;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66526269 | 66526421 | 66526269 | ID=Msa0616620-mRNA-1:exon:18949;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66527759 | 66527877 | 66527759 | ID=Msa0616620-mRNA-1:exon:18950;Parent=Msa0616620-mRNA-1 |
| chr4_2 | exon | 66528078 | 66528482 | 66528078 | ID=Msa0616620-mRNA-1:exon:18951;Parent=Msa0616620-mRNA-1 |
| chr4_2 | five_prime_UTR | 66524693 | 66524803 | 66524693 | ID=Msa0616620-mRNA-1:five_prime_utr;Parent=Msa0616620-mRNA-1 |
| chr4_2 | five_prime_UTR | 66524895 | 66524918 | 66524895 | ID=Msa0616620-mRNA-1:five_prime_utr;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66524919 | 66525133 | 66524919 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66525190 | 66525195 | 66525190 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66525378 | 66525385 | 66525378 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66526269 | 66526421 | 66526269 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66527759 | 66527877 | 66527759 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | CDS | 66528078 | 66528179 | 66528078 | ID=Msa0616620-mRNA-1:cds;Parent=Msa0616620-mRNA-1 |
| chr4_2 | three_prime_UTR | 66528180 | 66528482 | 66528180 | ID=Msa0616620-mRNA-1:three_prime_utr;Parent=Msa0616620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
