Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617290 | KEH20541.1 | 96.330 | 436 | 16 | 0 | 1 | 436 | 1 | 436 | 0.0 | 870 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617290 | sp|A0A2P1GIW7|SAT_CATRO | 34.033 | 429 | 241 | 10 | 2 | 416 | 4 | 404 | 1.04e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617290 | Msa0656330 | 0.829716 | 4.406180e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617290 | MtrunA17_Chr8g0376911 | 96.330 | 436 | 16 | 0 | 1 | 436 | 1 | 436 | 0.0 | 870 |
| Msa0617290 | MtrunA17_Chr8g0376901 | 61.298 | 447 | 152 | 8 | 1 | 436 | 1 | 437 | 0.0 | 534 |
| Msa0617290 | MtrunA17_Chr5g0438701 | 59.817 | 438 | 163 | 5 | 1 | 434 | 1 | 429 | 0.0 | 515 |
| Msa0617290 | MtrunA17_Chr8g0376891 | 56.885 | 443 | 178 | 6 | 1 | 436 | 1 | 437 | 7.43e-177 | 502 |
| Msa0617290 | MtrunA17_Chr5g0438681 | 57.596 | 441 | 171 | 6 | 1 | 436 | 1 | 430 | 5.83e-173 | 491 |
| Msa0617290 | MtrunA17_Chr3g0123061 | 35.862 | 435 | 244 | 8 | 1 | 426 | 3 | 411 | 6.32e-85 | 266 |
| Msa0617290 | MtrunA17_Chr2g0278481 | 37.199 | 457 | 251 | 13 | 1 | 436 | 15 | 456 | 8.77e-85 | 267 |
| Msa0617290 | MtrunA17_Chr1g0199561 | 31.887 | 461 | 275 | 14 | 1 | 436 | 1 | 447 | 1.43e-56 | 193 |
| Msa0617290 | MtrunA17_Chr8g0361771 | 32.462 | 459 | 270 | 16 | 1 | 436 | 1 | 442 | 7.47e-56 | 191 |
| Msa0617290 | MtrunA17_Chr8g0361781 | 30.617 | 454 | 283 | 14 | 1 | 435 | 1 | 441 | 8.22e-53 | 183 |
| Msa0617290 | MtrunA17_Chr5g0438721 | 58.647 | 133 | 54 | 1 | 56 | 188 | 6 | 137 | 5.99e-51 | 168 |
| Msa0617290 | MtrunA17_Chr8g0386141 | 28.325 | 406 | 216 | 15 | 59 | 425 | 59 | 428 | 1.19e-27 | 114 |
| Msa0617290 | MtrunA17_Chr7g0253501 | 25.612 | 449 | 280 | 13 | 3 | 408 | 2 | 439 | 1.37e-27 | 114 |
| Msa0617290 | MtrunA17_Chr3g0113181 | 25.587 | 426 | 248 | 14 | 56 | 430 | 63 | 470 | 1.44e-27 | 114 |
| Msa0617290 | MtrunA17_Chr7g0253531 | 25.813 | 461 | 264 | 16 | 3 | 408 | 2 | 439 | 7.29e-27 | 112 |
| Msa0617290 | MtrunA17_Chr4g0072041 | 25.676 | 444 | 288 | 15 | 11 | 422 | 22 | 455 | 2.02e-26 | 110 |
| Msa0617290 | MtrunA17_Chr7g0270681 | 60.976 | 82 | 31 | 1 | 41 | 122 | 5 | 85 | 1.38e-25 | 99.8 |
| Msa0617290 | MtrunA17_Chr5g0438711 | 64.179 | 67 | 24 | 0 | 370 | 436 | 1 | 67 | 2.28e-25 | 98.6 |
| Msa0617290 | MtrunA17_Chr3g0087401 | 26.185 | 443 | 265 | 18 | 5 | 404 | 4 | 427 | 2.38e-24 | 104 |
| Msa0617290 | MtrunA17_Chr8g0371821 | 26.492 | 419 | 249 | 19 | 37 | 423 | 35 | 426 | 7.34e-24 | 103 |
| Msa0617290 | MtrunA17_Chr7g0253541 | 26.126 | 444 | 277 | 18 | 1 | 404 | 2 | 434 | 4.46e-23 | 101 |
| Msa0617290 | MtrunA17_Chr1g0165711 | 24.658 | 438 | 249 | 18 | 9 | 424 | 15 | 393 | 1.37e-21 | 96.3 |
| Msa0617290 | MtrunA17_Chr7g0273791 | 22.034 | 472 | 285 | 17 | 9 | 435 | 16 | 449 | 8.03e-20 | 91.7 |
| Msa0617290 | MtrunA17_Chr5g0408911 | 24.706 | 425 | 283 | 12 | 2 | 404 | 17 | 426 | 9.60e-20 | 91.3 |
| Msa0617290 | MtrunA17_Chr2g0306321 | 24.714 | 437 | 268 | 21 | 5 | 403 | 20 | 433 | 1.30e-19 | 90.9 |
| Msa0617290 | MtrunA17_Chr8g0354371 | 25.000 | 360 | 241 | 11 | 51 | 393 | 56 | 403 | 1.83e-18 | 87.4 |
| Msa0617290 | MtrunA17_Chr3g0141851 | 22.573 | 443 | 277 | 13 | 11 | 420 | 20 | 429 | 3.05e-18 | 86.7 |
| Msa0617290 | MtrunA17_Chr4g0053091 | 25.581 | 387 | 237 | 13 | 17 | 383 | 32 | 387 | 3.21e-18 | 86.7 |
| Msa0617290 | MtrunA17_Chr8g0359251 | 23.684 | 380 | 245 | 11 | 51 | 404 | 55 | 415 | 8.31e-18 | 85.1 |
| Msa0617290 | MtrunA17_Chr5g0442701 | 23.874 | 444 | 280 | 18 | 3 | 403 | 10 | 438 | 2.09e-17 | 84.3 |
| Msa0617290 | MtrunA17_Chr7g0224391 | 25.068 | 367 | 221 | 12 | 59 | 397 | 68 | 408 | 1.82e-16 | 81.3 |
| Msa0617290 | MtrunA17_Chr1g0165681 | 25.540 | 278 | 179 | 10 | 7 | 268 | 13 | 278 | 7.24e-16 | 79.3 |
| Msa0617290 | MtrunA17_Chr7g0219291 | 23.678 | 435 | 276 | 13 | 16 | 404 | 367 | 791 | 1.04e-15 | 79.7 |
| Msa0617290 | MtrunA17_Chr4g0053081 | 24.384 | 365 | 236 | 9 | 54 | 393 | 59 | 408 | 1.12e-15 | 79.0 |
| Msa0617290 | MtrunA17_Chr1g0191081 | 24.359 | 468 | 268 | 19 | 9 | 430 | 24 | 451 | 1.43e-15 | 78.6 |
| Msa0617290 | MtrunA17_Chr1g0165671 | 23.629 | 474 | 274 | 22 | 9 | 435 | 33 | 465 | 3.13e-15 | 77.4 |
| Msa0617290 | MtrunA17_Chr4g0027071 | 24.681 | 470 | 268 | 21 | 11 | 427 | 20 | 456 | 3.95e-15 | 77.0 |
| Msa0617290 | MtrunA17_Chr7g0273721 | 22.538 | 457 | 281 | 19 | 9 | 424 | 17 | 441 | 3.08e-14 | 74.3 |
| Msa0617290 | MtrunA17_Chr3g0095721 | 25.606 | 371 | 217 | 17 | 54 | 384 | 67 | 418 | 4.99e-14 | 73.9 |
| Msa0617290 | MtrunA17_Chr3g0134041 | 23.844 | 411 | 271 | 15 | 3 | 386 | 7 | 402 | 6.64e-14 | 73.2 |
| Msa0617290 | MtrunA17_Chr8g0374641 | 22.911 | 371 | 239 | 13 | 52 | 392 | 52 | 405 | 1.91e-13 | 72.0 |
| Msa0617290 | MtrunA17_Chr7g0219121 | 24.719 | 445 | 272 | 17 | 15 | 404 | 17 | 453 | 3.34e-13 | 71.2 |
| Msa0617290 | MtrunA17_Chr4g0004701 | 28.743 | 167 | 106 | 4 | 251 | 404 | 52 | 218 | 3.09e-12 | 66.2 |
| Msa0617290 | MtrunA17_Chr4g0010311 | 25.344 | 363 | 229 | 17 | 53 | 386 | 49 | 398 | 4.19e-12 | 67.8 |
| Msa0617290 | MtrunA17_Chr4g0010331 | 24.931 | 361 | 229 | 18 | 52 | 386 | 48 | 392 | 5.48e-12 | 67.4 |
| Msa0617290 | MtrunA17_Chr4g0004691 | 27.647 | 170 | 108 | 4 | 11 | 174 | 12 | 172 | 1.37e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617290 | AT3G26040.1 | 35.541 | 453 | 257 | 11 | 1 | 436 | 1 | 435 | 2.75e-89 | 278 |
| Msa0617290 | AT1G24420.2 | 37.251 | 451 | 246 | 15 | 3 | 436 | 5 | 435 | 4.19e-72 | 234 |
| Msa0617290 | AT1G24420.1 | 37.251 | 451 | 246 | 15 | 3 | 436 | 5 | 435 | 4.19e-72 | 234 |
| Msa0617290 | AT1G24430.1 | 33.628 | 452 | 261 | 13 | 1 | 436 | 3 | 431 | 4.21e-72 | 233 |
| Msa0617290 | AT4G15390.1 | 33.186 | 452 | 274 | 12 | 1 | 436 | 6 | 445 | 5.55e-71 | 231 |
| Msa0617290 | AT4G15390.2 | 33.186 | 452 | 274 | 12 | 1 | 436 | 6 | 445 | 5.55e-71 | 231 |
| Msa0617290 | AT3G30280.1 | 32.522 | 452 | 276 | 13 | 1 | 436 | 4 | 442 | 8.75e-68 | 223 |
| Msa0617290 | AT5G47980.1 | 33.480 | 454 | 270 | 17 | 1 | 436 | 3 | 442 | 4.17e-64 | 213 |
| Msa0617290 | AT5G47950.1 | 32.675 | 456 | 253 | 16 | 1 | 436 | 4 | 425 | 1.62e-63 | 211 |
| Msa0617290 | AT5G23970.1 | 31.072 | 457 | 264 | 18 | 1 | 436 | 1 | 427 | 1.78e-59 | 200 |
| Msa0617290 | AT4G15400.1 | 31.868 | 455 | 266 | 17 | 2 | 436 | 4 | 434 | 1.81e-48 | 171 |
| Msa0617290 | AT2G19070.1 | 28.235 | 425 | 265 | 15 | 11 | 404 | 12 | 427 | 1.15e-34 | 134 |
| Msa0617290 | AT5G48930.1 | 23.983 | 467 | 270 | 19 | 1 | 421 | 1 | 428 | 4.79e-25 | 107 |
| Msa0617290 | AT3G48720.1 | 24.944 | 449 | 273 | 22 | 5 | 420 | 8 | 425 | 1.63e-21 | 96.7 |
| Msa0617290 | AT3G50280.1 | 27.222 | 360 | 218 | 16 | 52 | 383 | 52 | 395 | 1.73e-21 | 96.7 |
| Msa0617290 | AT3G50270.1 | 27.451 | 357 | 211 | 16 | 56 | 381 | 59 | 398 | 2.64e-21 | 96.3 |
| Msa0617290 | AT5G41040.2 | 25.995 | 377 | 207 | 15 | 59 | 397 | 69 | 411 | 3.71e-21 | 95.9 |
| Msa0617290 | AT5G41040.1 | 25.995 | 377 | 207 | 15 | 59 | 397 | 85 | 427 | 3.78e-21 | 95.9 |
| Msa0617290 | AT5G67150.1 | 25.428 | 409 | 264 | 14 | 2 | 383 | 4 | 398 | 1.19e-19 | 91.3 |
| Msa0617290 | AT5G63560.1 | 23.266 | 447 | 279 | 17 | 5 | 420 | 8 | 421 | 3.03e-19 | 89.7 |
| Msa0617290 | AT4G31910.1 | 24.541 | 436 | 242 | 15 | 41 | 419 | 46 | 451 | 4.35e-18 | 86.7 |
| Msa0617290 | AT1G65450.1 | 23.881 | 402 | 243 | 17 | 59 | 424 | 72 | 446 | 2.31e-17 | 84.3 |
| Msa0617290 | AT1G78990.1 | 25.723 | 346 | 220 | 12 | 59 | 382 | 67 | 397 | 2.93e-17 | 84.0 |
| Msa0617290 | AT5G17540.1 | 23.414 | 457 | 275 | 20 | 9 | 424 | 15 | 437 | 4.13e-17 | 83.6 |
| Msa0617290 | AT1G27620.1 | 23.937 | 447 | 264 | 18 | 10 | 420 | 16 | 422 | 1.84e-16 | 81.6 |
| Msa0617290 | AT5G38130.1 | 25.600 | 375 | 231 | 16 | 52 | 397 | 72 | 427 | 2.81e-16 | 81.3 |
| Msa0617290 | AT1G03390.1 | 23.077 | 429 | 241 | 20 | 6 | 383 | 19 | 409 | 3.41e-16 | 80.9 |
| Msa0617290 | AT3G03480.1 | 23.488 | 430 | 235 | 21 | 8 | 390 | 24 | 406 | 5.37e-16 | 80.1 |
| Msa0617290 | AT5G57840.1 | 22.148 | 447 | 307 | 16 | 1 | 421 | 1 | 432 | 1.23e-14 | 75.9 |
| Msa0617290 | AT2G25150.1 | 22.991 | 448 | 303 | 17 | 9 | 427 | 19 | 453 | 2.41e-14 | 75.1 |
| Msa0617290 | AT3G50280.2 | 26.374 | 273 | 170 | 12 | 130 | 386 | 11 | 268 | 1.76e-13 | 71.6 |
Find 93 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCACATTCTGGAAAATT+TGG | 0.153175 | 4_2:-67761896 | None:intergenic |
| ATTCTTGAGGTGTGAGATTT+TGG | 0.186893 | 4_2:-67761447 | None:intergenic |
| CCAATGTATGAAGCTGATTT+TGG | 0.192287 | 4_2:+67762391 | Msa0617290:CDS |
| TTCTCCTTCCCTATTCAATT+TGG | 0.221101 | 4_2:-67761795 | None:intergenic |
| TCTTTCCCTGCAAATTTCTT+TGG | 0.253467 | 4_2:-67762262 | None:intergenic |
| TCTATTACAAACTCACATTC+TGG | 0.271118 | 4_2:-67761905 | None:intergenic |
| AGCTTCAAACACAAATCTTT+TGG | 0.272043 | 4_2:-67761942 | None:intergenic |
| CTTTCAACTTCATGAATGAT+TGG | 0.304970 | 4_2:+67761771 | Msa0617290:CDS |
| TTGGATGGGGAAAACCGATA+TGG | 0.308270 | 4_2:+67762410 | Msa0617290:CDS |
| TTCTTCCATTGTAATTCATC+AGG | 0.324345 | 4_2:-67761641 | None:intergenic |
| AATACCAAGTCATGTAGTTC+CGG | 0.332848 | 4_2:-67762199 | None:intergenic |
| ATGTGATCTATGAAAGAGAT+AGG | 0.337365 | 4_2:-67761359 | None:intergenic |
| TCCATATACTACCCCTTTGC+AGG | 0.339333 | 4_2:+67761488 | Msa0617290:CDS |
| ACAAGTTACTACACCGGTTT+CGG | 0.350311 | 4_2:+67762318 | Msa0617290:CDS |
| GCCTGCAAAGGGGTAGTATA+TGG | 0.353376 | 4_2:-67761489 | None:intergenic |
| GTTTATCCAAAGAAATTTGC+AGG | 0.360964 | 4_2:+67762256 | Msa0617290:CDS |
| ATGATTGGGCCAAATTGAAT+AGG | 0.374513 | 4_2:+67761786 | Msa0617290:CDS |
| TAAGACCATGATGGTAAATC+TGG | 0.379728 | 4_2:+67761982 | Msa0617290:CDS |
| AAGAGATAGGGAAATTTCTA+AGG | 0.388890 | 4_2:-67761346 | None:intergenic |
| TGGGGTGGAGTTGGTGATGA+GGG | 0.400236 | 4_2:-67761323 | None:intergenic |
| AGTGTGTAGGGAACATAGTT+TGG | 0.402810 | 4_2:+67762158 | Msa0617290:CDS |
| TTTCTAAGGTGGGGTGGAGT+TGG | 0.410642 | 4_2:-67761332 | None:intergenic |
| TTTCAACTTCATGAATGATT+GGG | 0.416199 | 4_2:+67761772 | Msa0617290:CDS |
| GTCTTTGAACCTGCCTGCAA+AGG | 0.421847 | 4_2:-67761501 | None:intergenic |
| ATACCAAGTCATGTAGTTCC+GGG | 0.423875 | 4_2:-67762198 | None:intergenic |
| GTGGGGTGGAGTTGGTGATG+AGG | 0.450272 | 4_2:-67761324 | None:intergenic |
| GTTTGATTGTTTATGCTAGT+TGG | 0.451953 | 4_2:+67762359 | Msa0617290:CDS |
| TATCATCGTAAAAGAAAAGT+AGG | 0.461959 | 4_2:-67761403 | None:intergenic |
| TGGATGGGGAAAACCGATAT+GGG | 0.462617 | 4_2:+67762411 | Msa0617290:CDS |
| GATAGGGAAATTTCTAAGGT+GGG | 0.469619 | 4_2:-67761342 | None:intergenic |
| CCCTACAATTTACTTTATGC+AGG | 0.472172 | 4_2:+67761845 | Msa0617290:CDS |
| TCTTTGAACCTGCCTGCAAA+GGG | 0.475312 | 4_2:-67761500 | None:intergenic |
| TGATTGGGCCAAATTGAATA+GGG | 0.482735 | 4_2:+67761787 | Msa0617290:CDS |
| AAAACTATTGCATTCTTCAC+AGG | 0.486117 | 4_2:-67762451 | None:intergenic |
| CGTTACATTCGATGGAAAGT+TGG | 0.489078 | 4_2:-67761523 | None:intergenic |
| TCCTGCATAAAGTAAATTGT+AGG | 0.490248 | 4_2:-67761846 | None:intergenic |
| GAAATTTGCAGGGAAAGAAA+AGG | 0.492493 | 4_2:+67762267 | Msa0617290:CDS |
| CACTGTCTGATAAGTGTGTA+GGG | 0.492717 | 4_2:+67762146 | Msa0617290:CDS |
| TTATAATCACTCTCCGAAAC+CGG | 0.495695 | 4_2:-67762331 | None:intergenic |
| CCAAAATCAGCTTCATACAT+TGG | 0.497579 | 4_2:-67762391 | None:intergenic |
| AACCTAGTGAGATATGGAAA+TGG | 0.498413 | 4_2:+67761274 | None:intergenic |
| GTAATTCATCAGGGAACAAA+GGG | 0.498617 | 4_2:-67761631 | None:intergenic |
| TATACTACCCCTTTGCAGGC+AGG | 0.502052 | 4_2:+67761492 | Msa0617290:CDS |
| GTACTCGTTGTCACCCATAT+CGG | 0.503047 | 4_2:-67762424 | None:intergenic |
| TAAGTGTGTGGTTTCTGCAT+TGG | 0.503085 | 4_2:+67762060 | Msa0617290:CDS |
| AATTTGGCAAACTCCCTTGT+GGG | 0.508688 | 4_2:-67761880 | None:intergenic |
| ATCATCGTAAAAGAAAAGTA+GGG | 0.509382 | 4_2:-67761402 | None:intergenic |
| CAACCCGGAACTACATGACT+TGG | 0.515523 | 4_2:+67762195 | Msa0617290:CDS |
| CAAAACGACATCGCTTCGCA+TGG | 0.522509 | 4_2:+67762093 | Msa0617290:CDS |
| GGTTAGATTTGAACGAGAAG+TGG | 0.532468 | 4_2:+67762534 | Msa0617290:CDS |
| TTTCTAGTTGCAAATATCGC+AGG | 0.535623 | 4_2:+67761560 | Msa0617290:CDS |
| ATGGATACAAGAAATGGAGA+TGG | 0.538458 | 4_2:+67762475 | Msa0617290:CDS |
| AGATAGGGAAATTTCTAAGG+TGG | 0.541407 | 4_2:-67761343 | None:intergenic |
| TGTAATTCATCAGGGAACAA+AGG | 0.542689 | 4_2:-67761632 | None:intergenic |
| GACATCGCTTCGCATGGCTG+TGG | 0.547958 | 4_2:+67762099 | Msa0617290:CDS |
| AAAGTAGGGGCACATAGTTA+CGG | 0.549881 | 4_2:-67761388 | None:intergenic |
| ACCTTGATCGTTACATTCGA+TGG | 0.556319 | 4_2:-67761531 | None:intergenic |
| CAAAATTATAGACGCTGCAA+CGG | 0.559345 | 4_2:+67761748 | Msa0617290:CDS |
| CCTGCATAAAGTAAATTGTA+GGG | 0.560205 | 4_2:-67761845 | None:intergenic |
| TTTGAGATAAAGAATTCTTG+AGG | 0.564533 | 4_2:-67761460 | None:intergenic |
| GGGAAATTTCTAAGGTGGGG+TGG | 0.565334 | 4_2:-67761338 | None:intergenic |
| TGTGGATCTTCGTAGAAGAA+TGG | 0.565376 | 4_2:+67762117 | Msa0617290:CDS |
| CCACTGTCTGATAAGTGTGT+AGG | 0.568598 | 4_2:+67762145 | Msa0617290:CDS |
| TGTGATCTATGAAAGAGATA+GGG | 0.570467 | 4_2:-67761358 | None:intergenic |
| TGAATCCAGATTTACCATCA+TGG | 0.570533 | 4_2:-67761987 | None:intergenic |
| CTTAAAACAAGTTACTACAC+CGG | 0.579115 | 4_2:+67762312 | Msa0617290:CDS |
| TCCATCGAATGTAACGATCA+AGG | 0.583886 | 4_2:+67761530 | Msa0617290:CDS |
| AAATTTGGCAAACTCCCTTG+TGG | 0.586888 | 4_2:-67761881 | None:intergenic |
| TCTTCCATTGTAATTCATCA+GGG | 0.587466 | 4_2:-67761640 | None:intergenic |
| TTTATCCAAAGAAATTTGCA+GGG | 0.591630 | 4_2:+67762257 | Msa0617290:CDS |
| ACATCATATCAAACAATACT+CGG | 0.595620 | 4_2:-67762583 | None:intergenic |
| TGCAATGATTTATAAGTGTG+TGG | 0.599319 | 4_2:+67762048 | Msa0617290:CDS |
| AAAGTTACTTAAGACCATGA+TGG | 0.603181 | 4_2:+67761973 | Msa0617290:CDS |
| AGGAGAATCAAACTCAAAGT+CGG | 0.609187 | 4_2:+67761811 | Msa0617290:CDS |
| AGTGACAACTTCTACACGTG+TGG | 0.613702 | 4_2:-67762026 | None:intergenic |
| GTTCTTGTTTGTTATCAACC+CGG | 0.616177 | 4_2:+67762180 | Msa0617290:CDS |
| AACAATACTCGGATTAAGAG+AGG | 0.618426 | 4_2:-67762572 | None:intergenic |
| TGGGCCAAATTGAATAGGGA+AGG | 0.620717 | 4_2:+67761791 | Msa0617290:CDS |
| TGAATTACAATGGAAGAACA+TGG | 0.628831 | 4_2:+67761646 | Msa0617290:CDS |
| ATAGGGAAATTTCTAAGGTG+GGG | 0.632477 | 4_2:-67761341 | None:intergenic |
| TTGGTATTCAAAATTAGACA+AGG | 0.635078 | 4_2:+67762214 | Msa0617290:CDS |
| TGTTCCCTGATGAATTACAA+TGG | 0.646300 | 4_2:+67761636 | Msa0617290:CDS |
| TCATCGTAAAAGAAAAGTAG+GGG | 0.646720 | 4_2:-67761401 | None:intergenic |
| GTGACAACTTCTACACGTGT+GGG | 0.646828 | 4_2:-67762025 | None:intergenic |
| TGGTATTCAAAATTAGACAA+GGG | 0.652202 | 4_2:+67762215 | Msa0617290:CDS |
| GATTAAGAGAGGCATACTGA+AGG | 0.662777 | 4_2:-67762561 | None:intergenic |
| GGAGATACAATATTCCCACA+AGG | 0.690312 | 4_2:+67761866 | Msa0617290:CDS |
| CCTACACACTTATCAGACAG+TGG | 0.701128 | 4_2:-67762145 | None:intergenic |
| GGTAAATCTGGATTCACATG+AGG | 0.704642 | 4_2:+67761994 | Msa0617290:CDS |
| CTTTGAACCTGCCTGCAAAG+GGG | 0.706152 | 4_2:-67761499 | None:intergenic |
| GAGATACAATATTCCCACAA+GGG | 0.719383 | 4_2:+67761867 | Msa0617290:CDS |
| ACACACTTATCAGACAGTGG+AGG | 0.730201 | 4_2:-67762142 | None:intergenic |
| GAATATGAAAGAGAGTGACA+TGG | 0.783909 | 4_2:+67762513 | Msa0617290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATCGTAAAAGAAAAGTA+GGG | - | chr4_2:67761405-67761424 | None:intergenic | 25.0% |
| ! | TATCATCGTAAAAGAAAAGT+AGG | - | chr4_2:67761406-67761425 | None:intergenic | 25.0% |
| !! | TTTGAGATAAAGAATTCTTG+AGG | - | chr4_2:67761463-67761482 | None:intergenic | 25.0% |
| ! | TTTCAACTTCATGAATGATT+GGG | + | chr4_2:67761772-67761791 | Msa0617290:CDS | 25.0% |
| ! | TTGGTATTCAAAATTAGACA+AGG | + | chr4_2:67762214-67762233 | Msa0617290:CDS | 25.0% |
| ! | TGGTATTCAAAATTAGACAA+GGG | + | chr4_2:67762215-67762234 | Msa0617290:CDS | 25.0% |
| ! | TTTATCCAAAGAAATTTGCA+GGG | + | chr4_2:67762257-67762276 | Msa0617290:CDS | 25.0% |
| ! | ATCATCGTAAAAGAAAAGTA+GGG | - | chr4_2:67761405-67761424 | None:intergenic | 25.0% |
| ! | TATCATCGTAAAAGAAAAGT+AGG | - | chr4_2:67761406-67761425 | None:intergenic | 25.0% |
| !! | TTTGAGATAAAGAATTCTTG+AGG | - | chr4_2:67761463-67761482 | None:intergenic | 25.0% |
| ! | TTTCAACTTCATGAATGATT+GGG | + | chr4_2:67761772-67761791 | Msa0617290:CDS | 25.0% |
| ! | TTGGTATTCAAAATTAGACA+AGG | + | chr4_2:67762214-67762233 | Msa0617290:CDS | 25.0% |
| ! | TGGTATTCAAAATTAGACAA+GGG | + | chr4_2:67762215-67762234 | Msa0617290:CDS | 25.0% |
| ! | TTTATCCAAAGAAATTTGCA+GGG | + | chr4_2:67762257-67762276 | Msa0617290:CDS | 25.0% |
| AAGAGATAGGGAAATTTCTA+AGG | - | chr4_2:67761349-67761368 | None:intergenic | 30.0% | |
| TGTGATCTATGAAAGAGATA+GGG | - | chr4_2:67761361-67761380 | None:intergenic | 30.0% | |
| ATGTGATCTATGAAAGAGAT+AGG | - | chr4_2:67761362-67761381 | None:intergenic | 30.0% | |
| TCATCGTAAAAGAAAAGTAG+GGG | - | chr4_2:67761404-67761423 | None:intergenic | 30.0% | |
| ! | CAAAGGGTTAAGCAAATTTT+CGG | - | chr4_2:67761618-67761637 | None:intergenic | 30.0% |
| TCTTCCATTGTAATTCATCA+GGG | - | chr4_2:67761643-67761662 | None:intergenic | 30.0% | |
| TTCTTCCATTGTAATTCATC+AGG | - | chr4_2:67761644-67761663 | None:intergenic | 30.0% | |
| TGAATTACAATGGAAGAACA+TGG | + | chr4_2:67761646-67761665 | Msa0617290:CDS | 30.0% | |
| !! | CAAATCAATTGTTTTGCATG+TGG | + | chr4_2:67761695-67761714 | Msa0617290:CDS | 30.0% |
| CTTTCAACTTCATGAATGAT+TGG | + | chr4_2:67761771-67761790 | Msa0617290:CDS | 30.0% | |
| CCTGCATAAAGTAAATTGTA+GGG | - | chr4_2:67761848-67761867 | None:intergenic | 30.0% | |
| TCCTGCATAAAGTAAATTGT+AGG | - | chr4_2:67761849-67761868 | None:intergenic | 30.0% | |
| ! | AACTCACATTCTGGAAAATT+TGG | - | chr4_2:67761899-67761918 | None:intergenic | 30.0% |
| TCTATTACAAACTCACATTC+TGG | - | chr4_2:67761908-67761927 | None:intergenic | 30.0% | |
| ! | AGCTTCAAACACAAATCTTT+TGG | - | chr4_2:67761945-67761964 | None:intergenic | 30.0% |
| AAAGTTACTTAAGACCATGA+TGG | + | chr4_2:67761973-67761992 | Msa0617290:CDS | 30.0% | |
| TGCAATGATTTATAAGTGTG+TGG | + | chr4_2:67762048-67762067 | Msa0617290:CDS | 30.0% | |
| GTTTATCCAAAGAAATTTGC+AGG | + | chr4_2:67762256-67762275 | Msa0617290:CDS | 30.0% | |
| CTTAAAACAAGTTACTACAC+CGG | + | chr4_2:67762312-67762331 | Msa0617290:CDS | 30.0% | |
| GTTTGATTGTTTATGCTAGT+TGG | + | chr4_2:67762359-67762378 | Msa0617290:CDS | 30.0% | |
| AAAACTATTGCATTCTTCAC+AGG | - | chr4_2:67762454-67762473 | None:intergenic | 30.0% | |
| !!! | GAAGAATGCAATAGTTTTGA+TGG | + | chr4_2:67762456-67762475 | Msa0617290:CDS | 30.0% |
| !! | GTTTTGATGGATACAAGAAA+TGG | + | chr4_2:67762469-67762488 | Msa0617290:CDS | 30.0% |
| AAGAGATAGGGAAATTTCTA+AGG | - | chr4_2:67761349-67761368 | None:intergenic | 30.0% | |
| TGTGATCTATGAAAGAGATA+GGG | - | chr4_2:67761361-67761380 | None:intergenic | 30.0% | |
| ATGTGATCTATGAAAGAGAT+AGG | - | chr4_2:67761362-67761381 | None:intergenic | 30.0% | |
| TCATCGTAAAAGAAAAGTAG+GGG | - | chr4_2:67761404-67761423 | None:intergenic | 30.0% | |
| ! | CAAAGGGTTAAGCAAATTTT+CGG | - | chr4_2:67761618-67761637 | None:intergenic | 30.0% |
| TCTTCCATTGTAATTCATCA+GGG | - | chr4_2:67761643-67761662 | None:intergenic | 30.0% | |
| TTCTTCCATTGTAATTCATC+AGG | - | chr4_2:67761644-67761663 | None:intergenic | 30.0% | |
| TGAATTACAATGGAAGAACA+TGG | + | chr4_2:67761646-67761665 | Msa0617290:CDS | 30.0% | |
| !! | CAAATCAATTGTTTTGCATG+TGG | + | chr4_2:67761695-67761714 | Msa0617290:CDS | 30.0% |
| CTTTCAACTTCATGAATGAT+TGG | + | chr4_2:67761771-67761790 | Msa0617290:CDS | 30.0% | |
| CCTGCATAAAGTAAATTGTA+GGG | - | chr4_2:67761848-67761867 | None:intergenic | 30.0% | |
| TCCTGCATAAAGTAAATTGT+AGG | - | chr4_2:67761849-67761868 | None:intergenic | 30.0% | |
| ! | AACTCACATTCTGGAAAATT+TGG | - | chr4_2:67761899-67761918 | None:intergenic | 30.0% |
| TCTATTACAAACTCACATTC+TGG | - | chr4_2:67761908-67761927 | None:intergenic | 30.0% | |
| ! | AGCTTCAAACACAAATCTTT+TGG | - | chr4_2:67761945-67761964 | None:intergenic | 30.0% |
| AAAGTTACTTAAGACCATGA+TGG | + | chr4_2:67761973-67761992 | Msa0617290:CDS | 30.0% | |
| TGCAATGATTTATAAGTGTG+TGG | + | chr4_2:67762048-67762067 | Msa0617290:CDS | 30.0% | |
| GTTTATCCAAAGAAATTTGC+AGG | + | chr4_2:67762256-67762275 | Msa0617290:CDS | 30.0% | |
| CTTAAAACAAGTTACTACAC+CGG | + | chr4_2:67762312-67762331 | Msa0617290:CDS | 30.0% | |
| GTTTGATTGTTTATGCTAGT+TGG | + | chr4_2:67762359-67762378 | Msa0617290:CDS | 30.0% | |
| AAAACTATTGCATTCTTCAC+AGG | - | chr4_2:67762454-67762473 | None:intergenic | 30.0% | |
| !!! | GAAGAATGCAATAGTTTTGA+TGG | + | chr4_2:67762456-67762475 | Msa0617290:CDS | 30.0% |
| !! | GTTTTGATGGATACAAGAAA+TGG | + | chr4_2:67762469-67762488 | Msa0617290:CDS | 30.0% |
| !! | ATAGGGAAATTTCTAAGGTG+GGG | - | chr4_2:67761344-67761363 | None:intergenic | 35.0% |
| !! | GATAGGGAAATTTCTAAGGT+GGG | - | chr4_2:67761345-67761364 | None:intergenic | 35.0% |
| ! | AGATAGGGAAATTTCTAAGG+TGG | - | chr4_2:67761346-67761365 | None:intergenic | 35.0% |
| ! | ATTCTTGAGGTGTGAGATTT+TGG | - | chr4_2:67761450-67761469 | None:intergenic | 35.0% |
| !! | TTTCTAGTTGCAAATATCGC+AGG | + | chr4_2:67761560-67761579 | Msa0617290:CDS | 35.0% |
| GTAATTCATCAGGGAACAAA+GGG | - | chr4_2:67761634-67761653 | None:intergenic | 35.0% | |
| TGTAATTCATCAGGGAACAA+AGG | - | chr4_2:67761635-67761654 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | + | chr4_2:67761636-67761655 | Msa0617290:CDS | 35.0% | |
| !! | ATCAATTGTTTTGCATGTGG+AGG | + | chr4_2:67761698-67761717 | Msa0617290:CDS | 35.0% |
| CAAAATTATAGACGCTGCAA+CGG | + | chr4_2:67761748-67761767 | Msa0617290:CDS | 35.0% | |
| ATGATTGGGCCAAATTGAAT+AGG | + | chr4_2:67761786-67761805 | Msa0617290:CDS | 35.0% | |
| TGATTGGGCCAAATTGAATA+GGG | + | chr4_2:67761787-67761806 | Msa0617290:CDS | 35.0% | |
| TTCTCCTTCCCTATTCAATT+TGG | - | chr4_2:67761798-67761817 | None:intergenic | 35.0% | |
| AGGAGAATCAAACTCAAAGT+CGG | + | chr4_2:67761811-67761830 | Msa0617290:CDS | 35.0% | |
| CCCTACAATTTACTTTATGC+AGG | + | chr4_2:67761845-67761864 | Msa0617290:CDS | 35.0% | |
| GAGATACAATATTCCCACAA+GGG | + | chr4_2:67761867-67761886 | Msa0617290:CDS | 35.0% | |
| TAAGACCATGATGGTAAATC+TGG | + | chr4_2:67761982-67762001 | Msa0617290:CDS | 35.0% | |
| TGAATCCAGATTTACCATCA+TGG | - | chr4_2:67761990-67762009 | None:intergenic | 35.0% | |
| !! | GTTCTTGTTTGTTATCAACC+CGG | + | chr4_2:67762180-67762199 | Msa0617290:CDS | 35.0% |
| AATACCAAGTCATGTAGTTC+CGG | - | chr4_2:67762202-67762221 | None:intergenic | 35.0% | |
| TCTTTCCCTGCAAATTTCTT+TGG | - | chr4_2:67762265-67762284 | None:intergenic | 35.0% | |
| GAAATTTGCAGGGAAAGAAA+AGG | + | chr4_2:67762267-67762286 | Msa0617290:CDS | 35.0% | |
| TTATAATCACTCTCCGAAAC+CGG | - | chr4_2:67762334-67762353 | None:intergenic | 35.0% | |
| CCAAAATCAGCTTCATACAT+TGG | - | chr4_2:67762394-67762413 | None:intergenic | 35.0% | |
| !! | CCAATGTATGAAGCTGATTT+TGG | + | chr4_2:67762391-67762410 | Msa0617290:CDS | 35.0% |
| !! | TGTATGAAGCTGATTTTGGA+TGG | + | chr4_2:67762395-67762414 | Msa0617290:CDS | 35.0% |
| !! | GTATGAAGCTGATTTTGGAT+GGG | + | chr4_2:67762396-67762415 | Msa0617290:CDS | 35.0% |
| !! | TATGAAGCTGATTTTGGATG+GGG | + | chr4_2:67762397-67762416 | Msa0617290:CDS | 35.0% |
| ATGGATACAAGAAATGGAGA+TGG | + | chr4_2:67762475-67762494 | Msa0617290:CDS | 35.0% | |
| GAATATGAAAGAGAGTGACA+TGG | + | chr4_2:67762513-67762532 | Msa0617290:CDS | 35.0% | |
| AACAATACTCGGATTAAGAG+AGG | - | chr4_2:67762575-67762594 | None:intergenic | 35.0% | |
| !! | ATAGGGAAATTTCTAAGGTG+GGG | - | chr4_2:67761344-67761363 | None:intergenic | 35.0% |
| !! | GATAGGGAAATTTCTAAGGT+GGG | - | chr4_2:67761345-67761364 | None:intergenic | 35.0% |
| ! | AGATAGGGAAATTTCTAAGG+TGG | - | chr4_2:67761346-67761365 | None:intergenic | 35.0% |
| ! | ATTCTTGAGGTGTGAGATTT+TGG | - | chr4_2:67761450-67761469 | None:intergenic | 35.0% |
| !! | TTTCTAGTTGCAAATATCGC+AGG | + | chr4_2:67761560-67761579 | Msa0617290:CDS | 35.0% |
| GTAATTCATCAGGGAACAAA+GGG | - | chr4_2:67761634-67761653 | None:intergenic | 35.0% | |
| TGTAATTCATCAGGGAACAA+AGG | - | chr4_2:67761635-67761654 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | + | chr4_2:67761636-67761655 | Msa0617290:CDS | 35.0% | |
| !! | ATCAATTGTTTTGCATGTGG+AGG | + | chr4_2:67761698-67761717 | Msa0617290:CDS | 35.0% |
| CAAAATTATAGACGCTGCAA+CGG | + | chr4_2:67761748-67761767 | Msa0617290:CDS | 35.0% | |
| ATGATTGGGCCAAATTGAAT+AGG | + | chr4_2:67761786-67761805 | Msa0617290:CDS | 35.0% | |
| TGATTGGGCCAAATTGAATA+GGG | + | chr4_2:67761787-67761806 | Msa0617290:CDS | 35.0% | |
| TTCTCCTTCCCTATTCAATT+TGG | - | chr4_2:67761798-67761817 | None:intergenic | 35.0% | |
| AGGAGAATCAAACTCAAAGT+CGG | + | chr4_2:67761811-67761830 | Msa0617290:CDS | 35.0% | |
| CCCTACAATTTACTTTATGC+AGG | + | chr4_2:67761845-67761864 | Msa0617290:CDS | 35.0% | |
| GAGATACAATATTCCCACAA+GGG | + | chr4_2:67761867-67761886 | Msa0617290:CDS | 35.0% | |
| TAAGACCATGATGGTAAATC+TGG | + | chr4_2:67761982-67762001 | Msa0617290:CDS | 35.0% | |
| TGAATCCAGATTTACCATCA+TGG | - | chr4_2:67761990-67762009 | None:intergenic | 35.0% | |
| !! | GTTCTTGTTTGTTATCAACC+CGG | + | chr4_2:67762180-67762199 | Msa0617290:CDS | 35.0% |
| AATACCAAGTCATGTAGTTC+CGG | - | chr4_2:67762202-67762221 | None:intergenic | 35.0% | |
| TCTTTCCCTGCAAATTTCTT+TGG | - | chr4_2:67762265-67762284 | None:intergenic | 35.0% | |
| GAAATTTGCAGGGAAAGAAA+AGG | + | chr4_2:67762267-67762286 | Msa0617290:CDS | 35.0% | |
| TTATAATCACTCTCCGAAAC+CGG | - | chr4_2:67762334-67762353 | None:intergenic | 35.0% | |
| CCAAAATCAGCTTCATACAT+TGG | - | chr4_2:67762394-67762413 | None:intergenic | 35.0% | |
| !! | CCAATGTATGAAGCTGATTT+TGG | + | chr4_2:67762391-67762410 | Msa0617290:CDS | 35.0% |
| !! | TGTATGAAGCTGATTTTGGA+TGG | + | chr4_2:67762395-67762414 | Msa0617290:CDS | 35.0% |
| !! | GTATGAAGCTGATTTTGGAT+GGG | + | chr4_2:67762396-67762415 | Msa0617290:CDS | 35.0% |
| !! | TATGAAGCTGATTTTGGATG+GGG | + | chr4_2:67762397-67762416 | Msa0617290:CDS | 35.0% |
| ATGGATACAAGAAATGGAGA+TGG | + | chr4_2:67762475-67762494 | Msa0617290:CDS | 35.0% | |
| GAATATGAAAGAGAGTGACA+TGG | + | chr4_2:67762513-67762532 | Msa0617290:CDS | 35.0% | |
| AACAATACTCGGATTAAGAG+AGG | - | chr4_2:67762575-67762594 | None:intergenic | 35.0% | |
| ! | AAAGTAGGGGCACATAGTTA+CGG | - | chr4_2:67761391-67761410 | None:intergenic | 40.0% |
| CGTTACATTCGATGGAAAGT+TGG | - | chr4_2:67761526-67761545 | None:intergenic | 40.0% | |
| TCCATCGAATGTAACGATCA+AGG | + | chr4_2:67761530-67761549 | Msa0617290:CDS | 40.0% | |
| ACCTTGATCGTTACATTCGA+TGG | - | chr4_2:67761534-67761553 | None:intergenic | 40.0% | |
| ! | AATTTTCGGTGGGGTTTTTG+AGG | - | chr4_2:67761604-67761623 | None:intergenic | 40.0% |
| ! | GGTTAAGCAAATTTTCGGTG+GGG | - | chr4_2:67761613-67761632 | None:intergenic | 40.0% |
| ! | GGGTTAAGCAAATTTTCGGT+GGG | - | chr4_2:67761614-67761633 | None:intergenic | 40.0% |
| ! | AGGGTTAAGCAAATTTTCGG+TGG | - | chr4_2:67761615-67761634 | None:intergenic | 40.0% |
| GGAGATACAATATTCCCACA+AGG | + | chr4_2:67761866-67761885 | Msa0617290:CDS | 40.0% | |
| AATTTGGCAAACTCCCTTGT+GGG | - | chr4_2:67761883-67761902 | None:intergenic | 40.0% | |
| AAATTTGGCAAACTCCCTTG+TGG | - | chr4_2:67761884-67761903 | None:intergenic | 40.0% | |
| GGTAAATCTGGATTCACATG+AGG | + | chr4_2:67761994-67762013 | Msa0617290:CDS | 40.0% | |
| TAAGTGTGTGGTTTCTGCAT+TGG | + | chr4_2:67762060-67762079 | Msa0617290:CDS | 40.0% | |
| TGTGGATCTTCGTAGAAGAA+TGG | + | chr4_2:67762117-67762136 | Msa0617290:CDS | 40.0% | |
| CACTGTCTGATAAGTGTGTA+GGG | + | chr4_2:67762146-67762165 | Msa0617290:CDS | 40.0% | |
| AGTGTGTAGGGAACATAGTT+TGG | + | chr4_2:67762158-67762177 | Msa0617290:CDS | 40.0% | |
| ATACCAAGTCATGTAGTTCC+GGG | - | chr4_2:67762201-67762220 | None:intergenic | 40.0% | |
| !! | ACAAGTTACTACACCGGTTT+CGG | + | chr4_2:67762318-67762337 | Msa0617290:CDS | 40.0% |
| GGTTAGATTTGAACGAGAAG+TGG | + | chr4_2:67762534-67762553 | Msa0617290:CDS | 40.0% | |
| ! | GATTAAGAGAGGCATACTGA+AGG | - | chr4_2:67762564-67762583 | None:intergenic | 40.0% |
| ! | AAAGTAGGGGCACATAGTTA+CGG | - | chr4_2:67761391-67761410 | None:intergenic | 40.0% |
| CGTTACATTCGATGGAAAGT+TGG | - | chr4_2:67761526-67761545 | None:intergenic | 40.0% | |
| TCCATCGAATGTAACGATCA+AGG | + | chr4_2:67761530-67761549 | Msa0617290:CDS | 40.0% | |
| ACCTTGATCGTTACATTCGA+TGG | - | chr4_2:67761534-67761553 | None:intergenic | 40.0% | |
| ! | AATTTTCGGTGGGGTTTTTG+AGG | - | chr4_2:67761604-67761623 | None:intergenic | 40.0% |
| ! | GGTTAAGCAAATTTTCGGTG+GGG | - | chr4_2:67761613-67761632 | None:intergenic | 40.0% |
| ! | GGGTTAAGCAAATTTTCGGT+GGG | - | chr4_2:67761614-67761633 | None:intergenic | 40.0% |
| ! | AGGGTTAAGCAAATTTTCGG+TGG | - | chr4_2:67761615-67761634 | None:intergenic | 40.0% |
| GGAGATACAATATTCCCACA+AGG | + | chr4_2:67761866-67761885 | Msa0617290:CDS | 40.0% | |
| AATTTGGCAAACTCCCTTGT+GGG | - | chr4_2:67761883-67761902 | None:intergenic | 40.0% | |
| AAATTTGGCAAACTCCCTTG+TGG | - | chr4_2:67761884-67761903 | None:intergenic | 40.0% | |
| GGTAAATCTGGATTCACATG+AGG | + | chr4_2:67761994-67762013 | Msa0617290:CDS | 40.0% | |
| TAAGTGTGTGGTTTCTGCAT+TGG | + | chr4_2:67762060-67762079 | Msa0617290:CDS | 40.0% | |
| TGTGGATCTTCGTAGAAGAA+TGG | + | chr4_2:67762117-67762136 | Msa0617290:CDS | 40.0% | |
| CACTGTCTGATAAGTGTGTA+GGG | + | chr4_2:67762146-67762165 | Msa0617290:CDS | 40.0% | |
| AGTGTGTAGGGAACATAGTT+TGG | + | chr4_2:67762158-67762177 | Msa0617290:CDS | 40.0% | |
| ATACCAAGTCATGTAGTTCC+GGG | - | chr4_2:67762201-67762220 | None:intergenic | 40.0% | |
| !! | ACAAGTTACTACACCGGTTT+CGG | + | chr4_2:67762318-67762337 | Msa0617290:CDS | 40.0% |
| GGTTAGATTTGAACGAGAAG+TGG | + | chr4_2:67762534-67762553 | Msa0617290:CDS | 40.0% | |
| ! | GATTAAGAGAGGCATACTGA+AGG | - | chr4_2:67762564-67762583 | None:intergenic | 40.0% |
| TCCATATACTACCCCTTTGC+AGG | + | chr4_2:67761488-67761507 | Msa0617290:CDS | 45.0% | |
| TCTTTGAACCTGCCTGCAAA+GGG | - | chr4_2:67761503-67761522 | None:intergenic | 45.0% | |
| TGGGCCAAATTGAATAGGGA+AGG | + | chr4_2:67761791-67761810 | Msa0617290:CDS | 45.0% | |
| GTGACAACTTCTACACGTGT+GGG | - | chr4_2:67762028-67762047 | None:intergenic | 45.0% | |
| AGTGACAACTTCTACACGTG+TGG | - | chr4_2:67762029-67762048 | None:intergenic | 45.0% | |
| ACACACTTATCAGACAGTGG+AGG | - | chr4_2:67762145-67762164 | None:intergenic | 45.0% | |
| CCTACACACTTATCAGACAG+TGG | - | chr4_2:67762148-67762167 | None:intergenic | 45.0% | |
| CCACTGTCTGATAAGTGTGT+AGG | + | chr4_2:67762145-67762164 | Msa0617290:CDS | 45.0% | |
| !! | AGGGTTGTGTGAGTTTTGTG+AGG | + | chr4_2:67762234-67762253 | Msa0617290:CDS | 45.0% |
| TTGGATGGGGAAAACCGATA+TGG | + | chr4_2:67762410-67762429 | Msa0617290:CDS | 45.0% | |
| TGGATGGGGAAAACCGATAT+GGG | + | chr4_2:67762411-67762430 | Msa0617290:CDS | 45.0% | |
| GTACTCGTTGTCACCCATAT+CGG | - | chr4_2:67762427-67762446 | None:intergenic | 45.0% | |
| TCCATATACTACCCCTTTGC+AGG | + | chr4_2:67761488-67761507 | Msa0617290:CDS | 45.0% | |
| TCTTTGAACCTGCCTGCAAA+GGG | - | chr4_2:67761503-67761522 | None:intergenic | 45.0% | |
| TGGGCCAAATTGAATAGGGA+AGG | + | chr4_2:67761791-67761810 | Msa0617290:CDS | 45.0% | |
| GTGACAACTTCTACACGTGT+GGG | - | chr4_2:67762028-67762047 | None:intergenic | 45.0% | |
| AGTGACAACTTCTACACGTG+TGG | - | chr4_2:67762029-67762048 | None:intergenic | 45.0% | |
| ACACACTTATCAGACAGTGG+AGG | - | chr4_2:67762145-67762164 | None:intergenic | 45.0% | |
| CCTACACACTTATCAGACAG+TGG | - | chr4_2:67762148-67762167 | None:intergenic | 45.0% | |
| CCACTGTCTGATAAGTGTGT+AGG | + | chr4_2:67762145-67762164 | Msa0617290:CDS | 45.0% | |
| !! | AGGGTTGTGTGAGTTTTGTG+AGG | + | chr4_2:67762234-67762253 | Msa0617290:CDS | 45.0% |
| TTGGATGGGGAAAACCGATA+TGG | + | chr4_2:67762410-67762429 | Msa0617290:CDS | 45.0% | |
| TGGATGGGGAAAACCGATAT+GGG | + | chr4_2:67762411-67762430 | Msa0617290:CDS | 45.0% | |
| GTACTCGTTGTCACCCATAT+CGG | - | chr4_2:67762427-67762446 | None:intergenic | 45.0% | |
| !! | TTTCTAAGGTGGGGTGGAGT+TGG | - | chr4_2:67761335-67761354 | None:intergenic | 50.0% |
| !! | GGGAAATTTCTAAGGTGGGG+TGG | - | chr4_2:67761341-67761360 | None:intergenic | 50.0% |
| GCCTGCAAAGGGGTAGTATA+TGG | - | chr4_2:67761492-67761511 | None:intergenic | 50.0% | |
| TATACTACCCCTTTGCAGGC+AGG | + | chr4_2:67761492-67761511 | Msa0617290:CDS | 50.0% | |
| CTTTGAACCTGCCTGCAAAG+GGG | - | chr4_2:67761502-67761521 | None:intergenic | 50.0% | |
| GTCTTTGAACCTGCCTGCAA+AGG | - | chr4_2:67761504-67761523 | None:intergenic | 50.0% | |
| CAAAACGACATCGCTTCGCA+TGG | + | chr4_2:67762093-67762112 | Msa0617290:CDS | 50.0% | |
| CAACCCGGAACTACATGACT+TGG | + | chr4_2:67762195-67762214 | Msa0617290:CDS | 50.0% | |
| !! | TTTCTAAGGTGGGGTGGAGT+TGG | - | chr4_2:67761335-67761354 | None:intergenic | 50.0% |
| !! | GGGAAATTTCTAAGGTGGGG+TGG | - | chr4_2:67761341-67761360 | None:intergenic | 50.0% |
| GCCTGCAAAGGGGTAGTATA+TGG | - | chr4_2:67761492-67761511 | None:intergenic | 50.0% | |
| TATACTACCCCTTTGCAGGC+AGG | + | chr4_2:67761492-67761511 | Msa0617290:CDS | 50.0% | |
| CTTTGAACCTGCCTGCAAAG+GGG | - | chr4_2:67761502-67761521 | None:intergenic | 50.0% | |
| GTCTTTGAACCTGCCTGCAA+AGG | - | chr4_2:67761504-67761523 | None:intergenic | 50.0% | |
| CAAAACGACATCGCTTCGCA+TGG | + | chr4_2:67762093-67762112 | Msa0617290:CDS | 50.0% | |
| CAACCCGGAACTACATGACT+TGG | + | chr4_2:67762195-67762214 | Msa0617290:CDS | 50.0% | |
| !! | TGGGGTGGAGTTGGTGATGA+GGG | - | chr4_2:67761326-67761345 | None:intergenic | 55.0% |
| !! | TGGGGTGGAGTTGGTGATGA+GGG | - | chr4_2:67761326-67761345 | None:intergenic | 55.0% |
| !! | GTGGGGTGGAGTTGGTGATG+AGG | - | chr4_2:67761327-67761346 | None:intergenic | 60.0% |
| GACATCGCTTCGCATGGCTG+TGG | + | chr4_2:67762099-67762118 | Msa0617290:CDS | 60.0% | |
| !! | GTGGGGTGGAGTTGGTGATG+AGG | - | chr4_2:67761327-67761346 | None:intergenic | 60.0% |
| GACATCGCTTCGCATGGCTG+TGG | + | chr4_2:67762099-67762118 | Msa0617290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 67761287 | 67762597 | 67761287 | ID=Msa0617290;Name=Msa0617290 |
| chr4_2 | mRNA | 67761287 | 67762597 | 67761287 | ID=Msa0617290-mRNA-1;Parent=Msa0617290;Name=Msa0617290-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|436 |
| chr4_2 | exon | 67761287 | 67762597 | 67761287 | ID=Msa0617290-mRNA-1:exon:19392;Parent=Msa0617290-mRNA-1 |
| chr4_2 | CDS | 67761287 | 67762597 | 67761287 | ID=Msa0617290-mRNA-1:cds;Parent=Msa0617290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
