Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656330 | KEH20541.1 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656330 | sp|A0A2P1GIW7|SAT_CATRO | 34.180 | 433 | 235 | 11 | 2 | 416 | 4 | 404 | 1.28e-73 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656330 | A0A072TTM6 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0656330 | 0.801903 | 7.227407e-49 | -8.615850e-47 |
| Msa0059880 | Msa0656330 | 0.802055 | 6.725484e-49 | -8.615850e-47 |
| Msa0617290 | Msa0656330 | 0.829716 | 4.406180e-55 | -8.615850e-47 |
| Msa0656330 | Msa0700130 | 0.912900 | 1.145168e-83 | -8.615850e-47 |
| Msa0656330 | Msa0896920 | 0.801657 | 8.120470e-49 | -8.615850e-47 |
| Msa0656330 | Msa1006170 | 0.818729 | 1.684048e-52 | -8.615850e-47 |
| Msa0656330 | Msa1024350 | 0.805483 | 1.306193e-49 | -8.615850e-47 |
| Msa0656330 | Msa1048350 | 0.808790 | 2.605024e-50 | -8.615850e-47 |
| Msa0656330 | Msa1147030 | 0.816701 | 4.828407e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656330 | MtrunA17_Chr8g0376911 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 866 |
| Msa0656330 | MtrunA17_Chr8g0376901 | 61.074 | 447 | 153 | 8 | 1 | 436 | 1 | 437 | 0.0 | 536 |
| Msa0656330 | MtrunA17_Chr5g0438701 | 59.589 | 438 | 164 | 5 | 1 | 434 | 1 | 429 | 0.0 | 518 |
| Msa0656330 | MtrunA17_Chr8g0376891 | 56.659 | 443 | 179 | 6 | 1 | 436 | 1 | 437 | 5.23e-178 | 504 |
| Msa0656330 | MtrunA17_Chr5g0438681 | 57.370 | 441 | 172 | 6 | 1 | 436 | 1 | 430 | 2.89e-174 | 494 |
| Msa0656330 | MtrunA17_Chr2g0278481 | 36.980 | 457 | 252 | 13 | 1 | 436 | 15 | 456 | 2.28e-84 | 266 |
| Msa0656330 | MtrunA17_Chr3g0123061 | 36.092 | 435 | 243 | 8 | 1 | 426 | 3 | 411 | 8.41e-84 | 263 |
| Msa0656330 | MtrunA17_Chr8g0361771 | 32.462 | 459 | 270 | 16 | 1 | 436 | 1 | 442 | 1.69e-57 | 195 |
| Msa0656330 | MtrunA17_Chr1g0199561 | 30.937 | 459 | 282 | 13 | 1 | 436 | 1 | 447 | 3.27e-55 | 189 |
| Msa0656330 | MtrunA17_Chr8g0361781 | 30.617 | 454 | 283 | 14 | 1 | 435 | 1 | 441 | 2.08e-54 | 187 |
| Msa0656330 | MtrunA17_Chr5g0438721 | 59.398 | 133 | 53 | 1 | 56 | 188 | 6 | 137 | 2.11e-52 | 172 |
| Msa0656330 | MtrunA17_Chr7g0253531 | 26.222 | 450 | 276 | 14 | 3 | 408 | 2 | 439 | 4.76e-28 | 115 |
| Msa0656330 | MtrunA17_Chr7g0253501 | 25.612 | 449 | 280 | 13 | 3 | 408 | 2 | 439 | 9.89e-28 | 114 |
| Msa0656330 | MtrunA17_Chr8g0386141 | 28.571 | 406 | 215 | 15 | 59 | 425 | 59 | 428 | 1.53e-27 | 114 |
| Msa0656330 | MtrunA17_Chr3g0113181 | 25.293 | 427 | 248 | 15 | 56 | 430 | 63 | 470 | 3.78e-26 | 110 |
| Msa0656330 | MtrunA17_Chr4g0072041 | 25.390 | 449 | 283 | 16 | 11 | 422 | 22 | 455 | 1.15e-25 | 108 |
| Msa0656330 | MtrunA17_Chr7g0270681 | 60.976 | 82 | 31 | 1 | 41 | 122 | 5 | 85 | 1.35e-25 | 99.8 |
| Msa0656330 | MtrunA17_Chr5g0438711 | 64.179 | 67 | 24 | 0 | 370 | 436 | 1 | 67 | 2.47e-25 | 98.6 |
| Msa0656330 | MtrunA17_Chr3g0087401 | 25.629 | 437 | 275 | 16 | 5 | 404 | 4 | 427 | 7.39e-25 | 106 |
| Msa0656330 | MtrunA17_Chr8g0371821 | 26.316 | 418 | 251 | 18 | 37 | 423 | 35 | 426 | 6.67e-24 | 103 |
| Msa0656330 | MtrunA17_Chr7g0253541 | 26.126 | 444 | 277 | 18 | 1 | 404 | 2 | 434 | 1.76e-23 | 102 |
| Msa0656330 | MtrunA17_Chr1g0165711 | 24.773 | 440 | 246 | 19 | 9 | 424 | 15 | 393 | 9.62e-22 | 96.7 |
| Msa0656330 | MtrunA17_Chr2g0306321 | 24.714 | 437 | 268 | 20 | 5 | 403 | 20 | 433 | 8.59e-20 | 91.3 |
| Msa0656330 | MtrunA17_Chr7g0273791 | 21.822 | 472 | 286 | 17 | 9 | 435 | 16 | 449 | 1.13e-19 | 91.3 |
| Msa0656330 | MtrunA17_Chr5g0408911 | 24.235 | 425 | 285 | 12 | 2 | 404 | 17 | 426 | 3.51e-19 | 89.4 |
| Msa0656330 | MtrunA17_Chr3g0141851 | 23.251 | 443 | 274 | 14 | 11 | 420 | 20 | 429 | 5.73e-19 | 89.0 |
| Msa0656330 | MtrunA17_Chr8g0354371 | 24.722 | 360 | 242 | 11 | 51 | 393 | 56 | 403 | 3.62e-17 | 83.2 |
| Msa0656330 | MtrunA17_Chr4g0053091 | 25.065 | 387 | 239 | 13 | 17 | 383 | 32 | 387 | 4.00e-17 | 83.2 |
| Msa0656330 | MtrunA17_Chr5g0442701 | 24.099 | 444 | 279 | 19 | 3 | 403 | 10 | 438 | 6.43e-17 | 82.8 |
| Msa0656330 | MtrunA17_Chr8g0359251 | 24.869 | 382 | 238 | 13 | 51 | 404 | 55 | 415 | 8.03e-17 | 82.4 |
| Msa0656330 | MtrunA17_Chr1g0165681 | 26.165 | 279 | 176 | 10 | 7 | 268 | 13 | 278 | 1.79e-16 | 81.3 |
| Msa0656330 | MtrunA17_Chr1g0165671 | 24.051 | 474 | 272 | 23 | 9 | 435 | 33 | 465 | 2.48e-16 | 80.9 |
| Msa0656330 | MtrunA17_Chr7g0224391 | 24.932 | 365 | 224 | 13 | 59 | 397 | 68 | 408 | 4.76e-16 | 79.7 |
| Msa0656330 | MtrunA17_Chr1g0191081 | 24.145 | 468 | 269 | 19 | 9 | 430 | 24 | 451 | 9.35e-16 | 79.0 |
| Msa0656330 | MtrunA17_Chr7g0219291 | 23.678 | 435 | 276 | 14 | 16 | 404 | 367 | 791 | 3.26e-15 | 78.2 |
| Msa0656330 | MtrunA17_Chr4g0053081 | 24.863 | 366 | 233 | 10 | 54 | 393 | 59 | 408 | 5.33e-15 | 76.6 |
| Msa0656330 | MtrunA17_Chr3g0095721 | 26.146 | 371 | 215 | 17 | 54 | 384 | 67 | 418 | 9.36e-15 | 76.3 |
| Msa0656330 | MtrunA17_Chr3g0095731 | 22.642 | 424 | 279 | 12 | 38 | 422 | 44 | 457 | 2.04e-14 | 75.1 |
| Msa0656330 | MtrunA17_Chr4g0027071 | 25.478 | 471 | 263 | 22 | 11 | 427 | 20 | 456 | 2.53e-14 | 74.7 |
| Msa0656330 | MtrunA17_Chr6g0455361 | 23.991 | 446 | 274 | 16 | 16 | 419 | 27 | 449 | 3.54e-14 | 74.3 |
| Msa0656330 | MtrunA17_Chr4g0053111 | 21.684 | 392 | 251 | 13 | 41 | 397 | 44 | 414 | 9.87e-14 | 72.8 |
| Msa0656330 | MtrunA17_Chr8g0374641 | 23.450 | 371 | 237 | 14 | 52 | 392 | 52 | 405 | 2.24e-13 | 71.6 |
| Msa0656330 | MtrunA17_Chr7g0273721 | 22.101 | 457 | 283 | 19 | 9 | 424 | 17 | 441 | 2.53e-13 | 71.6 |
| Msa0656330 | MtrunA17_Chr4g0053061 | 23.483 | 379 | 253 | 14 | 53 | 402 | 81 | 451 | 1.36e-12 | 69.3 |
| Msa0656330 | MtrunA17_Chr3g0113821 | 24.060 | 399 | 259 | 14 | 11 | 383 | 13 | 393 | 1.48e-12 | 68.9 |
| Msa0656330 | MtrunA17_Chr4g0010121 | 24.282 | 383 | 239 | 17 | 52 | 403 | 92 | 454 | 1.87e-12 | 68.9 |
| Msa0656330 | MtrunA17_Chr7g0219121 | 24.944 | 445 | 271 | 17 | 15 | 404 | 17 | 453 | 2.05e-12 | 68.9 |
| Msa0656330 | MtrunA17_Chr4g0004701 | 27.536 | 207 | 132 | 5 | 216 | 404 | 12 | 218 | 2.12e-12 | 66.6 |
| Msa0656330 | MtrunA17_Chr4g0010311 | 25.824 | 364 | 226 | 19 | 53 | 386 | 49 | 398 | 1.92e-11 | 65.9 |
| Msa0656330 | MtrunA17_Chr4g0010331 | 24.654 | 361 | 230 | 18 | 52 | 386 | 48 | 392 | 4.56e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656330 | AT3G26040.1 | 36.044 | 455 | 252 | 12 | 1 | 436 | 1 | 435 | 2.97e-89 | 278 |
| Msa0656330 | AT1G24430.1 | 34.292 | 452 | 258 | 14 | 1 | 436 | 3 | 431 | 1.22e-71 | 232 |
| Msa0656330 | AT1G24420.2 | 37.168 | 452 | 245 | 16 | 3 | 436 | 5 | 435 | 2.16e-71 | 232 |
| Msa0656330 | AT1G24420.1 | 37.168 | 452 | 245 | 16 | 3 | 436 | 5 | 435 | 2.16e-71 | 232 |
| Msa0656330 | AT4G15390.1 | 33.040 | 454 | 272 | 13 | 1 | 436 | 6 | 445 | 1.24e-69 | 228 |
| Msa0656330 | AT4G15390.2 | 33.040 | 454 | 272 | 13 | 1 | 436 | 6 | 445 | 1.24e-69 | 228 |
| Msa0656330 | AT3G30280.1 | 32.450 | 453 | 275 | 14 | 1 | 436 | 4 | 442 | 1.98e-66 | 219 |
| Msa0656330 | AT5G47980.1 | 33.407 | 452 | 273 | 16 | 1 | 436 | 3 | 442 | 1.06e-63 | 212 |
| Msa0656330 | AT5G47950.1 | 32.159 | 454 | 258 | 16 | 1 | 436 | 4 | 425 | 2.40e-62 | 208 |
| Msa0656330 | AT5G23970.1 | 31.072 | 457 | 264 | 18 | 1 | 436 | 1 | 427 | 2.14e-58 | 197 |
| Msa0656330 | AT4G15400.1 | 31.579 | 456 | 266 | 18 | 2 | 436 | 4 | 434 | 1.92e-47 | 169 |
| Msa0656330 | AT2G19070.1 | 28.000 | 425 | 266 | 15 | 11 | 404 | 12 | 427 | 3.00e-33 | 130 |
| Msa0656330 | AT5G48930.1 | 23.110 | 463 | 279 | 16 | 1 | 421 | 1 | 428 | 6.59e-24 | 103 |
| Msa0656330 | AT3G50280.1 | 26.891 | 357 | 223 | 15 | 52 | 383 | 52 | 395 | 1.31e-21 | 97.1 |
| Msa0656330 | AT3G48720.1 | 24.667 | 450 | 273 | 21 | 5 | 420 | 8 | 425 | 5.67e-21 | 95.1 |
| Msa0656330 | AT5G41040.2 | 25.729 | 377 | 208 | 15 | 59 | 397 | 69 | 411 | 9.20e-20 | 91.7 |
| Msa0656330 | AT5G41040.1 | 25.729 | 377 | 208 | 15 | 59 | 397 | 85 | 427 | 9.90e-20 | 91.7 |
| Msa0656330 | AT5G67150.1 | 25.000 | 408 | 267 | 14 | 2 | 383 | 4 | 398 | 2.90e-19 | 90.1 |
| Msa0656330 | AT5G63560.1 | 23.937 | 447 | 276 | 18 | 5 | 420 | 8 | 421 | 3.29e-19 | 89.7 |
| Msa0656330 | AT4G31910.1 | 25.172 | 437 | 238 | 17 | 41 | 419 | 46 | 451 | 9.36e-18 | 85.5 |
| Msa0656330 | AT1G65450.1 | 23.559 | 399 | 242 | 17 | 59 | 421 | 72 | 443 | 3.91e-17 | 83.6 |
| Msa0656330 | AT1G78990.1 | 25.723 | 346 | 220 | 13 | 59 | 382 | 67 | 397 | 4.42e-16 | 80.5 |
| Msa0656330 | AT5G38130.1 | 25.600 | 375 | 231 | 16 | 52 | 397 | 72 | 427 | 4.61e-16 | 80.5 |
| Msa0656330 | AT5G17540.1 | 22.926 | 458 | 276 | 20 | 9 | 424 | 15 | 437 | 6.36e-16 | 80.1 |
| Msa0656330 | AT1G03390.1 | 23.206 | 418 | 254 | 20 | 6 | 383 | 19 | 409 | 1.08e-15 | 79.3 |
| Msa0656330 | AT5G57840.1 | 22.595 | 447 | 305 | 16 | 1 | 421 | 1 | 432 | 1.68e-15 | 78.6 |
| Msa0656330 | AT3G03480.1 | 23.023 | 430 | 237 | 21 | 8 | 390 | 24 | 406 | 5.12e-15 | 77.4 |
Find 92 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCACATTCTGGGAAATT+TGG | 0.164798 | 4_3:+65620237 | None:intergenic |
| ATTCTTGAGGTGTGAGATTT+TGG | 0.186893 | 4_3:+65620686 | None:intergenic |
| CCAATGTATGAAGCTGATTT+TGG | 0.192287 | 4_3:-65619742 | Msa0656330:CDS |
| TCTATTACAAACTCACATTC+TGG | 0.246799 | 4_3:+65620228 | None:intergenic |
| TTCTCCTTCGCTATTCAATT+TGG | 0.251393 | 4_3:+65620338 | None:intergenic |
| TCTTTCCCTGCAAATTTCTT+TGG | 0.253467 | 4_3:+65619871 | None:intergenic |
| ATTTGTGTTTGAAGCTTCTA+AGG | 0.271551 | 4_3:-65620184 | Msa0656330:CDS |
| AGCTTCAAACACAAATCTTT+TGG | 0.272043 | 4_3:+65620191 | None:intergenic |
| CTTTCAACTTCATGAATGAT+TGG | 0.304970 | 4_3:-65620362 | Msa0656330:CDS |
| TTGGATGGGGAAAACCGATA+TGG | 0.308270 | 4_3:-65619723 | Msa0656330:CDS |
| TTCTTCCATTGTAATTCATC+AGG | 0.324345 | 4_3:+65620492 | None:intergenic |
| AATACCAAGTCATGTAGTTC+CGG | 0.332848 | 4_3:+65619934 | None:intergenic |
| ATGTGATCTATGAAAGAGAT+AGG | 0.337365 | 4_3:+65620774 | None:intergenic |
| TCCATATACTACCCCTTTGC+AGG | 0.339333 | 4_3:-65620645 | Msa0656330:CDS |
| ACAAGTTACTACACCGGTTT+CGG | 0.350311 | 4_3:-65619815 | Msa0656330:CDS |
| GCCTGCAAAGGGGTAGTATA+TGG | 0.353376 | 4_3:+65620644 | None:intergenic |
| GTTTATCCAAAGAAATTTGC+AGG | 0.360964 | 4_3:-65619877 | Msa0656330:CDS |
| TAAGTCCATGATGGTAAATC+TGG | 0.361121 | 4_3:-65620151 | Msa0656330:CDS |
| AAGAGATAGGGAAATTTCTA+AGG | 0.388890 | 4_3:+65620787 | None:intergenic |
| TGGGGTGGAGTTGGTGATGA+GGG | 0.400236 | 4_3:+65620810 | None:intergenic |
| AGTGTGTAGGGAACATAGTT+TGG | 0.402810 | 4_3:-65619975 | Msa0656330:CDS |
| TTTCTAAGGTGGGGTGGAGT+TGG | 0.410642 | 4_3:+65620801 | None:intergenic |
| TTTCAACTTCATGAATGATT+GGG | 0.416199 | 4_3:-65620361 | Msa0656330:CDS |
| ATACCAAGTCATGTAGTTCC+GGG | 0.423875 | 4_3:+65619935 | None:intergenic |
| GTGGGGTGGAGTTGGTGATG+AGG | 0.450272 | 4_3:+65620809 | None:intergenic |
| GTTTGATTGTTTATGCTAGT+TGG | 0.451953 | 4_3:-65619774 | Msa0656330:CDS |
| TCTTTGAACCTGCCTGCAAA+GGG | 0.453526 | 4_3:+65620633 | None:intergenic |
| CTATTACAAACTCACATTCT+GGG | 0.456233 | 4_3:+65620229 | None:intergenic |
| TATCATCGTAAAAGAAAAGT+AGG | 0.461959 | 4_3:+65620730 | None:intergenic |
| TGGATGGGGAAAACCGATAT+GGG | 0.462617 | 4_3:-65619722 | Msa0656330:CDS |
| TCCTGCATGAAGTAAATTGT+AGG | 0.464671 | 4_3:+65620287 | None:intergenic |
| GATAGGGAAATTTCTAAGGT+GGG | 0.469619 | 4_3:+65620791 | None:intergenic |
| TACAATGGAAGAACATGGAT+TGG | 0.478008 | 4_3:-65620482 | Msa0656330:CDS |
| ATCTTTGAACCTGCCTGCAA+AGG | 0.478471 | 4_3:+65620632 | None:intergenic |
| AAAACTATTGCATTCTTCAC+AGG | 0.486117 | 4_3:+65619682 | None:intergenic |
| GAAATTTGCAGGGAAAGAAA+AGG | 0.492493 | 4_3:-65619866 | Msa0656330:CDS |
| CACTGTCTGATAAGTGTGTA+GGG | 0.492717 | 4_3:-65619987 | Msa0656330:CDS |
| TTATAATCACTCTCCGAAAC+CGG | 0.495695 | 4_3:+65619802 | None:intergenic |
| CCAAAATCAGCTTCATACAT+TGG | 0.497579 | 4_3:+65619742 | None:intergenic |
| AACCTAGTGAGATATGGAAA+TGG | 0.498413 | 4_3:-65620859 | None:intergenic |
| GTAATTCATCAGGGAACAAA+GGG | 0.498617 | 4_3:+65620502 | None:intergenic |
| TATACTACCCCTTTGCAGGC+AGG | 0.502052 | 4_3:-65620641 | Msa0656330:CDS |
| GTACTCGTTGTCACCCATAT+CGG | 0.503047 | 4_3:+65619709 | None:intergenic |
| TAAGTGTGTGGTTTCTGCAT+TGG | 0.503085 | 4_3:-65620073 | Msa0656330:CDS |
| CCCTACAATTTACTTCATGC+AGG | 0.509113 | 4_3:-65620288 | Msa0656330:CDS |
| ATCATCGTAAAAGAAAAGTA+GGG | 0.509382 | 4_3:+65620731 | None:intergenic |
| CAACCCGGAACTACATGACT+TGG | 0.515523 | 4_3:-65619938 | Msa0656330:CDS |
| CAAAACGACATCGCTTCGCA+TGG | 0.522509 | 4_3:-65620040 | Msa0656330:CDS |
| GGTTAGATTTGAACGAGAAG+TGG | 0.532468 | 4_3:-65619599 | Msa0656330:CDS |
| TTTCTAGTTGCAAATATCGC+AGG | 0.535623 | 4_3:-65620573 | Msa0656330:CDS |
| ATGGATACAAGAAATGGAGA+TGG | 0.538458 | 4_3:-65619658 | Msa0656330:CDS |
| AGATAGGGAAATTTCTAAGG+TGG | 0.541407 | 4_3:+65620790 | None:intergenic |
| TGTAATTCATCAGGGAACAA+AGG | 0.542689 | 4_3:+65620501 | None:intergenic |
| GACATCGCTTCGCATGGCTG+TGG | 0.547958 | 4_3:-65620034 | Msa0656330:CDS |
| AAAGTAGGGGCACATAGTTA+CGG | 0.549881 | 4_3:+65620745 | None:intergenic |
| ACCTTGATCGTTACATTCGA+TGG | 0.556319 | 4_3:+65620602 | None:intergenic |
| CCTGCATGAAGTAAATTGTA+GGG | 0.557210 | 4_3:+65620288 | None:intergenic |
| CAAAATTATAGACGCTGCAA+CGG | 0.559345 | 4_3:-65620385 | Msa0656330:CDS |
| TTTGAGATAAAGAATTCTTG+AGG | 0.564533 | 4_3:+65620673 | None:intergenic |
| GGGAAATTTCTAAGGTGGGG+TGG | 0.565334 | 4_3:+65620795 | None:intergenic |
| TGTGGATCTTCGTAGAAGAA+TGG | 0.565376 | 4_3:-65620016 | Msa0656330:CDS |
| CCACTGTCTGATAAGTGTGT+AGG | 0.568598 | 4_3:-65619988 | Msa0656330:CDS |
| TGAATCCAGATTTACCATCA+TGG | 0.569462 | 4_3:+65620146 | None:intergenic |
| TGTGATCTATGAAAGAGATA+GGG | 0.570467 | 4_3:+65620775 | None:intergenic |
| CTTAAAACAAGTTACTACAC+CGG | 0.579115 | 4_3:-65619821 | Msa0656330:CDS |
| AAAGTTACTTAAGTCCATGA+TGG | 0.580203 | 4_3:-65620160 | Msa0656330:CDS |
| TCCATCGAATGTAACGATCA+AGG | 0.583886 | 4_3:-65620603 | Msa0656330:CDS |
| TCTTCCATTGTAATTCATCA+GGG | 0.587466 | 4_3:+65620493 | None:intergenic |
| TTTATCCAAAGAAATTTGCA+GGG | 0.591630 | 4_3:-65619876 | Msa0656330:CDS |
| ACATCATATCAAACAATACT+CGG | 0.595620 | 4_3:+65619550 | None:intergenic |
| TGCAATGATTTATAAGTGTG+TGG | 0.599319 | 4_3:-65620085 | Msa0656330:CDS |
| AGTGACAACTTCTACACGTG+TGG | 0.613702 | 4_3:+65620107 | None:intergenic |
| GTTCTTGTTTGTTATCAACC+CGG | 0.616177 | 4_3:-65619953 | Msa0656330:CDS |
| AACAATACTCGGATTAAGAG+AGG | 0.618426 | 4_3:+65619561 | None:intergenic |
| TGGGCCAAATTGAATAGCGA+AGG | 0.623888 | 4_3:-65620342 | Msa0656330:CDS |
| TGAATTACAATGGAAGAACA+TGG | 0.628831 | 4_3:-65620487 | Msa0656330:CDS |
| ATAGGGAAATTTCTAAGGTG+GGG | 0.632477 | 4_3:+65620792 | None:intergenic |
| TTGGTATTCAAAATTAGACA+AGG | 0.635078 | 4_3:-65619919 | Msa0656330:CDS |
| AAATTTGGCAAACTCCCTCG+TGG | 0.644808 | 4_3:+65620252 | None:intergenic |
| AATTTGGCAAACTCCCTCGT+GGG | 0.645915 | 4_3:+65620253 | None:intergenic |
| TGTTCCCTGATGAATTACAA+TGG | 0.646300 | 4_3:-65620497 | Msa0656330:CDS |
| TCATCGTAAAAGAAAAGTAG+GGG | 0.646720 | 4_3:+65620732 | None:intergenic |
| GTGACAACTTCTACACGTGT+GGG | 0.646828 | 4_3:+65620108 | None:intergenic |
| TGGTATTCAAAATTAGACAA+GGG | 0.652202 | 4_3:-65619918 | Msa0656330:CDS |
| GATTAAGAGAGGCATACTGA+AGG | 0.662777 | 4_3:+65619572 | None:intergenic |
| CCTACACACTTATCAGACAG+TGG | 0.701128 | 4_3:+65619988 | None:intergenic |
| GGTAAATCTGGATTCACATG+AGG | 0.704642 | 4_3:-65620139 | Msa0656330:CDS |
| CTTTGAACCTGCCTGCAAAG+GGG | 0.706152 | 4_3:+65620634 | None:intergenic |
| GAGATACAATATTCCCACGA+GGG | 0.719170 | 4_3:-65620266 | Msa0656330:CDS |
| ACACACTTATCAGACAGTGG+AGG | 0.730201 | 4_3:+65619991 | None:intergenic |
| GGAGATACAATATTCCCACG+AGG | 0.760478 | 4_3:-65620267 | Msa0656330:CDS |
| GAATATGAAAGAGAGTGACA+TGG | 0.783909 | 4_3:-65619620 | Msa0656330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATCGTAAAAGAAAAGTA+GGG | + | chr4_3:65619676-65619695 | None:intergenic | 25.0% |
| ! | TATCATCGTAAAAGAAAAGT+AGG | + | chr4_3:65619677-65619696 | None:intergenic | 25.0% |
| !! | TTTGAGATAAAGAATTCTTG+AGG | + | chr4_3:65619734-65619753 | None:intergenic | 25.0% |
| ! | TTTCAACTTCATGAATGATT+GGG | - | chr4_3:65620043-65620062 | Msa0656330:CDS | 25.0% |
| ! | TTGGTATTCAAAATTAGACA+AGG | - | chr4_3:65620485-65620504 | Msa0656330:CDS | 25.0% |
| ! | TGGTATTCAAAATTAGACAA+GGG | - | chr4_3:65620486-65620505 | Msa0656330:CDS | 25.0% |
| ! | TTTATCCAAAGAAATTTGCA+GGG | - | chr4_3:65620528-65620547 | Msa0656330:CDS | 25.0% |
| ! | ATCATCGTAAAAGAAAAGTA+GGG | + | chr4_3:65619676-65619695 | None:intergenic | 25.0% |
| ! | TATCATCGTAAAAGAAAAGT+AGG | + | chr4_3:65619677-65619696 | None:intergenic | 25.0% |
| !! | TTTGAGATAAAGAATTCTTG+AGG | + | chr4_3:65619734-65619753 | None:intergenic | 25.0% |
| ! | TTTCAACTTCATGAATGATT+GGG | - | chr4_3:65620043-65620062 | Msa0656330:CDS | 25.0% |
| ! | TTGGTATTCAAAATTAGACA+AGG | - | chr4_3:65620485-65620504 | Msa0656330:CDS | 25.0% |
| ! | TGGTATTCAAAATTAGACAA+GGG | - | chr4_3:65620486-65620505 | Msa0656330:CDS | 25.0% |
| ! | TTTATCCAAAGAAATTTGCA+GGG | - | chr4_3:65620528-65620547 | Msa0656330:CDS | 25.0% |
| AAGAGATAGGGAAATTTCTA+AGG | + | chr4_3:65619620-65619639 | None:intergenic | 30.0% | |
| TGTGATCTATGAAAGAGATA+GGG | + | chr4_3:65619632-65619651 | None:intergenic | 30.0% | |
| ATGTGATCTATGAAAGAGAT+AGG | + | chr4_3:65619633-65619652 | None:intergenic | 30.0% | |
| TCATCGTAAAAGAAAAGTAG+GGG | + | chr4_3:65619675-65619694 | None:intergenic | 30.0% | |
| ! | CAAAGGGTTAAGCAAATTTT+CGG | + | chr4_3:65619889-65619908 | None:intergenic | 30.0% |
| TCTTCCATTGTAATTCATCA+GGG | + | chr4_3:65619914-65619933 | None:intergenic | 30.0% | |
| TTCTTCCATTGTAATTCATC+AGG | + | chr4_3:65619915-65619934 | None:intergenic | 30.0% | |
| TGAATTACAATGGAAGAACA+TGG | - | chr4_3:65619917-65619936 | Msa0656330:CDS | 30.0% | |
| !! | CAAATCAATTGTTTTGCATG+TGG | - | chr4_3:65619966-65619985 | Msa0656330:CDS | 30.0% |
| CTTTCAACTTCATGAATGAT+TGG | - | chr4_3:65620042-65620061 | Msa0656330:CDS | 30.0% | |
| CTATTACAAACTCACATTCT+GGG | + | chr4_3:65620178-65620197 | None:intergenic | 30.0% | |
| TCTATTACAAACTCACATTC+TGG | + | chr4_3:65620179-65620198 | None:intergenic | 30.0% | |
| ! | AGCTTCAAACACAAATCTTT+TGG | + | chr4_3:65620216-65620235 | None:intergenic | 30.0% |
| ! | ATTTGTGTTTGAAGCTTCTA+AGG | - | chr4_3:65620220-65620239 | Msa0656330:CDS | 30.0% |
| AAAGTTACTTAAGTCCATGA+TGG | - | chr4_3:65620244-65620263 | Msa0656330:CDS | 30.0% | |
| TGCAATGATTTATAAGTGTG+TGG | - | chr4_3:65620319-65620338 | Msa0656330:CDS | 30.0% | |
| GTTTATCCAAAGAAATTTGC+AGG | - | chr4_3:65620527-65620546 | Msa0656330:CDS | 30.0% | |
| CTTAAAACAAGTTACTACAC+CGG | - | chr4_3:65620583-65620602 | Msa0656330:CDS | 30.0% | |
| GTTTGATTGTTTATGCTAGT+TGG | - | chr4_3:65620630-65620649 | Msa0656330:CDS | 30.0% | |
| AAAACTATTGCATTCTTCAC+AGG | + | chr4_3:65620725-65620744 | None:intergenic | 30.0% | |
| !!! | GAAGAATGCAATAGTTTTGA+TGG | - | chr4_3:65620727-65620746 | Msa0656330:CDS | 30.0% |
| !! | GTTTTGATGGATACAAGAAA+TGG | - | chr4_3:65620740-65620759 | Msa0656330:CDS | 30.0% |
| AAGAGATAGGGAAATTTCTA+AGG | + | chr4_3:65619620-65619639 | None:intergenic | 30.0% | |
| TGTGATCTATGAAAGAGATA+GGG | + | chr4_3:65619632-65619651 | None:intergenic | 30.0% | |
| ATGTGATCTATGAAAGAGAT+AGG | + | chr4_3:65619633-65619652 | None:intergenic | 30.0% | |
| TCATCGTAAAAGAAAAGTAG+GGG | + | chr4_3:65619675-65619694 | None:intergenic | 30.0% | |
| ! | CAAAGGGTTAAGCAAATTTT+CGG | + | chr4_3:65619889-65619908 | None:intergenic | 30.0% |
| TCTTCCATTGTAATTCATCA+GGG | + | chr4_3:65619914-65619933 | None:intergenic | 30.0% | |
| TTCTTCCATTGTAATTCATC+AGG | + | chr4_3:65619915-65619934 | None:intergenic | 30.0% | |
| TGAATTACAATGGAAGAACA+TGG | - | chr4_3:65619917-65619936 | Msa0656330:CDS | 30.0% | |
| !! | CAAATCAATTGTTTTGCATG+TGG | - | chr4_3:65619966-65619985 | Msa0656330:CDS | 30.0% |
| CTTTCAACTTCATGAATGAT+TGG | - | chr4_3:65620042-65620061 | Msa0656330:CDS | 30.0% | |
| CTATTACAAACTCACATTCT+GGG | + | chr4_3:65620178-65620197 | None:intergenic | 30.0% | |
| TCTATTACAAACTCACATTC+TGG | + | chr4_3:65620179-65620198 | None:intergenic | 30.0% | |
| ! | AGCTTCAAACACAAATCTTT+TGG | + | chr4_3:65620216-65620235 | None:intergenic | 30.0% |
| ! | ATTTGTGTTTGAAGCTTCTA+AGG | - | chr4_3:65620220-65620239 | Msa0656330:CDS | 30.0% |
| AAAGTTACTTAAGTCCATGA+TGG | - | chr4_3:65620244-65620263 | Msa0656330:CDS | 30.0% | |
| TGCAATGATTTATAAGTGTG+TGG | - | chr4_3:65620319-65620338 | Msa0656330:CDS | 30.0% | |
| GTTTATCCAAAGAAATTTGC+AGG | - | chr4_3:65620527-65620546 | Msa0656330:CDS | 30.0% | |
| CTTAAAACAAGTTACTACAC+CGG | - | chr4_3:65620583-65620602 | Msa0656330:CDS | 30.0% | |
| GTTTGATTGTTTATGCTAGT+TGG | - | chr4_3:65620630-65620649 | Msa0656330:CDS | 30.0% | |
| AAAACTATTGCATTCTTCAC+AGG | + | chr4_3:65620725-65620744 | None:intergenic | 30.0% | |
| !!! | GAAGAATGCAATAGTTTTGA+TGG | - | chr4_3:65620727-65620746 | Msa0656330:CDS | 30.0% |
| !! | GTTTTGATGGATACAAGAAA+TGG | - | chr4_3:65620740-65620759 | Msa0656330:CDS | 30.0% |
| !! | ATAGGGAAATTTCTAAGGTG+GGG | + | chr4_3:65619615-65619634 | None:intergenic | 35.0% |
| !! | GATAGGGAAATTTCTAAGGT+GGG | + | chr4_3:65619616-65619635 | None:intergenic | 35.0% |
| ! | AGATAGGGAAATTTCTAAGG+TGG | + | chr4_3:65619617-65619636 | None:intergenic | 35.0% |
| ! | ATTCTTGAGGTGTGAGATTT+TGG | + | chr4_3:65619721-65619740 | None:intergenic | 35.0% |
| !! | TTTCTAGTTGCAAATATCGC+AGG | - | chr4_3:65619831-65619850 | Msa0656330:CDS | 35.0% |
| GTAATTCATCAGGGAACAAA+GGG | + | chr4_3:65619905-65619924 | None:intergenic | 35.0% | |
| TGTAATTCATCAGGGAACAA+AGG | + | chr4_3:65619906-65619925 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | - | chr4_3:65619907-65619926 | Msa0656330:CDS | 35.0% | |
| TACAATGGAAGAACATGGAT+TGG | - | chr4_3:65619922-65619941 | Msa0656330:CDS | 35.0% | |
| !! | ATCAATTGTTTTGCATGTGG+AGG | - | chr4_3:65619969-65619988 | Msa0656330:CDS | 35.0% |
| CAAAATTATAGACGCTGCAA+CGG | - | chr4_3:65620019-65620038 | Msa0656330:CDS | 35.0% | |
| TTCTCCTTCGCTATTCAATT+TGG | + | chr4_3:65620069-65620088 | None:intergenic | 35.0% | |
| CCTGCATGAAGTAAATTGTA+GGG | + | chr4_3:65620119-65620138 | None:intergenic | 35.0% | |
| TCCTGCATGAAGTAAATTGT+AGG | + | chr4_3:65620120-65620139 | None:intergenic | 35.0% | |
| ! | AACTCACATTCTGGGAAATT+TGG | + | chr4_3:65620170-65620189 | None:intergenic | 35.0% |
| TAAGTCCATGATGGTAAATC+TGG | - | chr4_3:65620253-65620272 | Msa0656330:CDS | 35.0% | |
| TGAATCCAGATTTACCATCA+TGG | + | chr4_3:65620261-65620280 | None:intergenic | 35.0% | |
| !! | GTTCTTGTTTGTTATCAACC+CGG | - | chr4_3:65620451-65620470 | Msa0656330:CDS | 35.0% |
| AATACCAAGTCATGTAGTTC+CGG | + | chr4_3:65620473-65620492 | None:intergenic | 35.0% | |
| TCTTTCCCTGCAAATTTCTT+TGG | + | chr4_3:65620536-65620555 | None:intergenic | 35.0% | |
| GAAATTTGCAGGGAAAGAAA+AGG | - | chr4_3:65620538-65620557 | Msa0656330:CDS | 35.0% | |
| TTATAATCACTCTCCGAAAC+CGG | + | chr4_3:65620605-65620624 | None:intergenic | 35.0% | |
| CCAAAATCAGCTTCATACAT+TGG | + | chr4_3:65620665-65620684 | None:intergenic | 35.0% | |
| !! | CCAATGTATGAAGCTGATTT+TGG | - | chr4_3:65620662-65620681 | Msa0656330:CDS | 35.0% |
| !! | TGTATGAAGCTGATTTTGGA+TGG | - | chr4_3:65620666-65620685 | Msa0656330:CDS | 35.0% |
| !! | GTATGAAGCTGATTTTGGAT+GGG | - | chr4_3:65620667-65620686 | Msa0656330:CDS | 35.0% |
| !! | TATGAAGCTGATTTTGGATG+GGG | - | chr4_3:65620668-65620687 | Msa0656330:CDS | 35.0% |
| ATGGATACAAGAAATGGAGA+TGG | - | chr4_3:65620746-65620765 | Msa0656330:CDS | 35.0% | |
| GAATATGAAAGAGAGTGACA+TGG | - | chr4_3:65620784-65620803 | Msa0656330:CDS | 35.0% | |
| AACAATACTCGGATTAAGAG+AGG | + | chr4_3:65620846-65620865 | None:intergenic | 35.0% | |
| !! | ATAGGGAAATTTCTAAGGTG+GGG | + | chr4_3:65619615-65619634 | None:intergenic | 35.0% |
| !! | GATAGGGAAATTTCTAAGGT+GGG | + | chr4_3:65619616-65619635 | None:intergenic | 35.0% |
| ! | AGATAGGGAAATTTCTAAGG+TGG | + | chr4_3:65619617-65619636 | None:intergenic | 35.0% |
| ! | ATTCTTGAGGTGTGAGATTT+TGG | + | chr4_3:65619721-65619740 | None:intergenic | 35.0% |
| !! | TTTCTAGTTGCAAATATCGC+AGG | - | chr4_3:65619831-65619850 | Msa0656330:CDS | 35.0% |
| GTAATTCATCAGGGAACAAA+GGG | + | chr4_3:65619905-65619924 | None:intergenic | 35.0% | |
| TGTAATTCATCAGGGAACAA+AGG | + | chr4_3:65619906-65619925 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | - | chr4_3:65619907-65619926 | Msa0656330:CDS | 35.0% | |
| TACAATGGAAGAACATGGAT+TGG | - | chr4_3:65619922-65619941 | Msa0656330:CDS | 35.0% | |
| !! | ATCAATTGTTTTGCATGTGG+AGG | - | chr4_3:65619969-65619988 | Msa0656330:CDS | 35.0% |
| CAAAATTATAGACGCTGCAA+CGG | - | chr4_3:65620019-65620038 | Msa0656330:CDS | 35.0% | |
| TTCTCCTTCGCTATTCAATT+TGG | + | chr4_3:65620069-65620088 | None:intergenic | 35.0% | |
| CCTGCATGAAGTAAATTGTA+GGG | + | chr4_3:65620119-65620138 | None:intergenic | 35.0% | |
| TCCTGCATGAAGTAAATTGT+AGG | + | chr4_3:65620120-65620139 | None:intergenic | 35.0% | |
| ! | AACTCACATTCTGGGAAATT+TGG | + | chr4_3:65620170-65620189 | None:intergenic | 35.0% |
| TAAGTCCATGATGGTAAATC+TGG | - | chr4_3:65620253-65620272 | Msa0656330:CDS | 35.0% | |
| TGAATCCAGATTTACCATCA+TGG | + | chr4_3:65620261-65620280 | None:intergenic | 35.0% | |
| !! | GTTCTTGTTTGTTATCAACC+CGG | - | chr4_3:65620451-65620470 | Msa0656330:CDS | 35.0% |
| AATACCAAGTCATGTAGTTC+CGG | + | chr4_3:65620473-65620492 | None:intergenic | 35.0% | |
| TCTTTCCCTGCAAATTTCTT+TGG | + | chr4_3:65620536-65620555 | None:intergenic | 35.0% | |
| GAAATTTGCAGGGAAAGAAA+AGG | - | chr4_3:65620538-65620557 | Msa0656330:CDS | 35.0% | |
| TTATAATCACTCTCCGAAAC+CGG | + | chr4_3:65620605-65620624 | None:intergenic | 35.0% | |
| CCAAAATCAGCTTCATACAT+TGG | + | chr4_3:65620665-65620684 | None:intergenic | 35.0% | |
| !! | CCAATGTATGAAGCTGATTT+TGG | - | chr4_3:65620662-65620681 | Msa0656330:CDS | 35.0% |
| !! | TGTATGAAGCTGATTTTGGA+TGG | - | chr4_3:65620666-65620685 | Msa0656330:CDS | 35.0% |
| !! | GTATGAAGCTGATTTTGGAT+GGG | - | chr4_3:65620667-65620686 | Msa0656330:CDS | 35.0% |
| !! | TATGAAGCTGATTTTGGATG+GGG | - | chr4_3:65620668-65620687 | Msa0656330:CDS | 35.0% |
| ATGGATACAAGAAATGGAGA+TGG | - | chr4_3:65620746-65620765 | Msa0656330:CDS | 35.0% | |
| GAATATGAAAGAGAGTGACA+TGG | - | chr4_3:65620784-65620803 | Msa0656330:CDS | 35.0% | |
| AACAATACTCGGATTAAGAG+AGG | + | chr4_3:65620846-65620865 | None:intergenic | 35.0% | |
| ! | AAAGTAGGGGCACATAGTTA+CGG | + | chr4_3:65619662-65619681 | None:intergenic | 40.0% |
| TCCATCGAATGTAACGATCA+AGG | - | chr4_3:65619801-65619820 | Msa0656330:CDS | 40.0% | |
| ACCTTGATCGTTACATTCGA+TGG | + | chr4_3:65619805-65619824 | None:intergenic | 40.0% | |
| ! | AATTTTCGGTGGGGTTTTTG+AGG | + | chr4_3:65619875-65619894 | None:intergenic | 40.0% |
| ! | GGTTAAGCAAATTTTCGGTG+GGG | + | chr4_3:65619884-65619903 | None:intergenic | 40.0% |
| ! | GGGTTAAGCAAATTTTCGGT+GGG | + | chr4_3:65619885-65619904 | None:intergenic | 40.0% |
| ! | AGGGTTAAGCAAATTTTCGG+TGG | + | chr4_3:65619886-65619905 | None:intergenic | 40.0% |
| CCCTACAATTTACTTCATGC+AGG | - | chr4_3:65620116-65620135 | Msa0656330:CDS | 40.0% | |
| GAGATACAATATTCCCACGA+GGG | - | chr4_3:65620138-65620157 | Msa0656330:CDS | 40.0% | |
| GGTAAATCTGGATTCACATG+AGG | - | chr4_3:65620265-65620284 | Msa0656330:CDS | 40.0% | |
| TAAGTGTGTGGTTTCTGCAT+TGG | - | chr4_3:65620331-65620350 | Msa0656330:CDS | 40.0% | |
| TGTGGATCTTCGTAGAAGAA+TGG | - | chr4_3:65620388-65620407 | Msa0656330:CDS | 40.0% | |
| CACTGTCTGATAAGTGTGTA+GGG | - | chr4_3:65620417-65620436 | Msa0656330:CDS | 40.0% | |
| AGTGTGTAGGGAACATAGTT+TGG | - | chr4_3:65620429-65620448 | Msa0656330:CDS | 40.0% | |
| ATACCAAGTCATGTAGTTCC+GGG | + | chr4_3:65620472-65620491 | None:intergenic | 40.0% | |
| !! | ACAAGTTACTACACCGGTTT+CGG | - | chr4_3:65620589-65620608 | Msa0656330:CDS | 40.0% |
| GGTTAGATTTGAACGAGAAG+TGG | - | chr4_3:65620805-65620824 | Msa0656330:CDS | 40.0% | |
| ! | GATTAAGAGAGGCATACTGA+AGG | + | chr4_3:65620835-65620854 | None:intergenic | 40.0% |
| ! | AAAGTAGGGGCACATAGTTA+CGG | + | chr4_3:65619662-65619681 | None:intergenic | 40.0% |
| TCCATCGAATGTAACGATCA+AGG | - | chr4_3:65619801-65619820 | Msa0656330:CDS | 40.0% | |
| ACCTTGATCGTTACATTCGA+TGG | + | chr4_3:65619805-65619824 | None:intergenic | 40.0% | |
| ! | AATTTTCGGTGGGGTTTTTG+AGG | + | chr4_3:65619875-65619894 | None:intergenic | 40.0% |
| ! | GGTTAAGCAAATTTTCGGTG+GGG | + | chr4_3:65619884-65619903 | None:intergenic | 40.0% |
| ! | GGGTTAAGCAAATTTTCGGT+GGG | + | chr4_3:65619885-65619904 | None:intergenic | 40.0% |
| ! | AGGGTTAAGCAAATTTTCGG+TGG | + | chr4_3:65619886-65619905 | None:intergenic | 40.0% |
| CCCTACAATTTACTTCATGC+AGG | - | chr4_3:65620116-65620135 | Msa0656330:CDS | 40.0% | |
| GAGATACAATATTCCCACGA+GGG | - | chr4_3:65620138-65620157 | Msa0656330:CDS | 40.0% | |
| GGTAAATCTGGATTCACATG+AGG | - | chr4_3:65620265-65620284 | Msa0656330:CDS | 40.0% | |
| TAAGTGTGTGGTTTCTGCAT+TGG | - | chr4_3:65620331-65620350 | Msa0656330:CDS | 40.0% | |
| TGTGGATCTTCGTAGAAGAA+TGG | - | chr4_3:65620388-65620407 | Msa0656330:CDS | 40.0% | |
| CACTGTCTGATAAGTGTGTA+GGG | - | chr4_3:65620417-65620436 | Msa0656330:CDS | 40.0% | |
| AGTGTGTAGGGAACATAGTT+TGG | - | chr4_3:65620429-65620448 | Msa0656330:CDS | 40.0% | |
| ATACCAAGTCATGTAGTTCC+GGG | + | chr4_3:65620472-65620491 | None:intergenic | 40.0% | |
| !! | ACAAGTTACTACACCGGTTT+CGG | - | chr4_3:65620589-65620608 | Msa0656330:CDS | 40.0% |
| GGTTAGATTTGAACGAGAAG+TGG | - | chr4_3:65620805-65620824 | Msa0656330:CDS | 40.0% | |
| ! | GATTAAGAGAGGCATACTGA+AGG | + | chr4_3:65620835-65620854 | None:intergenic | 40.0% |
| TCCATATACTACCCCTTTGC+AGG | - | chr4_3:65619759-65619778 | Msa0656330:CDS | 45.0% | |
| TCTTTGAACCTGCCTGCAAA+GGG | + | chr4_3:65619774-65619793 | None:intergenic | 45.0% | |
| ATCTTTGAACCTGCCTGCAA+AGG | + | chr4_3:65619775-65619794 | None:intergenic | 45.0% | |
| TGGGCCAAATTGAATAGCGA+AGG | - | chr4_3:65620062-65620081 | Msa0656330:CDS | 45.0% | |
| GGAGATACAATATTCCCACG+AGG | - | chr4_3:65620137-65620156 | Msa0656330:CDS | 45.0% | |
| AATTTGGCAAACTCCCTCGT+GGG | + | chr4_3:65620154-65620173 | None:intergenic | 45.0% | |
| AAATTTGGCAAACTCCCTCG+TGG | + | chr4_3:65620155-65620174 | None:intergenic | 45.0% | |
| GTGACAACTTCTACACGTGT+GGG | + | chr4_3:65620299-65620318 | None:intergenic | 45.0% | |
| AGTGACAACTTCTACACGTG+TGG | + | chr4_3:65620300-65620319 | None:intergenic | 45.0% | |
| ACACACTTATCAGACAGTGG+AGG | + | chr4_3:65620416-65620435 | None:intergenic | 45.0% | |
| CCTACACACTTATCAGACAG+TGG | + | chr4_3:65620419-65620438 | None:intergenic | 45.0% | |
| CCACTGTCTGATAAGTGTGT+AGG | - | chr4_3:65620416-65620435 | Msa0656330:CDS | 45.0% | |
| !! | AGGGTTGTGTGAGTTTTGTG+AGG | - | chr4_3:65620505-65620524 | Msa0656330:CDS | 45.0% |
| TTGGATGGGGAAAACCGATA+TGG | - | chr4_3:65620681-65620700 | Msa0656330:CDS | 45.0% | |
| TGGATGGGGAAAACCGATAT+GGG | - | chr4_3:65620682-65620701 | Msa0656330:CDS | 45.0% | |
| GTACTCGTTGTCACCCATAT+CGG | + | chr4_3:65620698-65620717 | None:intergenic | 45.0% | |
| TCCATATACTACCCCTTTGC+AGG | - | chr4_3:65619759-65619778 | Msa0656330:CDS | 45.0% | |
| TCTTTGAACCTGCCTGCAAA+GGG | + | chr4_3:65619774-65619793 | None:intergenic | 45.0% | |
| ATCTTTGAACCTGCCTGCAA+AGG | + | chr4_3:65619775-65619794 | None:intergenic | 45.0% | |
| TGGGCCAAATTGAATAGCGA+AGG | - | chr4_3:65620062-65620081 | Msa0656330:CDS | 45.0% | |
| GGAGATACAATATTCCCACG+AGG | - | chr4_3:65620137-65620156 | Msa0656330:CDS | 45.0% | |
| AATTTGGCAAACTCCCTCGT+GGG | + | chr4_3:65620154-65620173 | None:intergenic | 45.0% | |
| AAATTTGGCAAACTCCCTCG+TGG | + | chr4_3:65620155-65620174 | None:intergenic | 45.0% | |
| GTGACAACTTCTACACGTGT+GGG | + | chr4_3:65620299-65620318 | None:intergenic | 45.0% | |
| AGTGACAACTTCTACACGTG+TGG | + | chr4_3:65620300-65620319 | None:intergenic | 45.0% | |
| ACACACTTATCAGACAGTGG+AGG | + | chr4_3:65620416-65620435 | None:intergenic | 45.0% | |
| CCTACACACTTATCAGACAG+TGG | + | chr4_3:65620419-65620438 | None:intergenic | 45.0% | |
| CCACTGTCTGATAAGTGTGT+AGG | - | chr4_3:65620416-65620435 | Msa0656330:CDS | 45.0% | |
| !! | AGGGTTGTGTGAGTTTTGTG+AGG | - | chr4_3:65620505-65620524 | Msa0656330:CDS | 45.0% |
| TTGGATGGGGAAAACCGATA+TGG | - | chr4_3:65620681-65620700 | Msa0656330:CDS | 45.0% | |
| TGGATGGGGAAAACCGATAT+GGG | - | chr4_3:65620682-65620701 | Msa0656330:CDS | 45.0% | |
| GTACTCGTTGTCACCCATAT+CGG | + | chr4_3:65620698-65620717 | None:intergenic | 45.0% | |
| !! | TTTCTAAGGTGGGGTGGAGT+TGG | + | chr4_3:65619606-65619625 | None:intergenic | 50.0% |
| !! | GGGAAATTTCTAAGGTGGGG+TGG | + | chr4_3:65619612-65619631 | None:intergenic | 50.0% |
| GCCTGCAAAGGGGTAGTATA+TGG | + | chr4_3:65619763-65619782 | None:intergenic | 50.0% | |
| TATACTACCCCTTTGCAGGC+AGG | - | chr4_3:65619763-65619782 | Msa0656330:CDS | 50.0% | |
| CTTTGAACCTGCCTGCAAAG+GGG | + | chr4_3:65619773-65619792 | None:intergenic | 50.0% | |
| CAAAACGACATCGCTTCGCA+TGG | - | chr4_3:65620364-65620383 | Msa0656330:CDS | 50.0% | |
| CAACCCGGAACTACATGACT+TGG | - | chr4_3:65620466-65620485 | Msa0656330:CDS | 50.0% | |
| !! | TTTCTAAGGTGGGGTGGAGT+TGG | + | chr4_3:65619606-65619625 | None:intergenic | 50.0% |
| !! | GGGAAATTTCTAAGGTGGGG+TGG | + | chr4_3:65619612-65619631 | None:intergenic | 50.0% |
| GCCTGCAAAGGGGTAGTATA+TGG | + | chr4_3:65619763-65619782 | None:intergenic | 50.0% | |
| TATACTACCCCTTTGCAGGC+AGG | - | chr4_3:65619763-65619782 | Msa0656330:CDS | 50.0% | |
| CTTTGAACCTGCCTGCAAAG+GGG | + | chr4_3:65619773-65619792 | None:intergenic | 50.0% | |
| CAAAACGACATCGCTTCGCA+TGG | - | chr4_3:65620364-65620383 | Msa0656330:CDS | 50.0% | |
| CAACCCGGAACTACATGACT+TGG | - | chr4_3:65620466-65620485 | Msa0656330:CDS | 50.0% | |
| !! | TGGGGTGGAGTTGGTGATGA+GGG | + | chr4_3:65619597-65619616 | None:intergenic | 55.0% |
| !! | TGGGGTGGAGTTGGTGATGA+GGG | + | chr4_3:65619597-65619616 | None:intergenic | 55.0% |
| !! | GTGGGGTGGAGTTGGTGATG+AGG | + | chr4_3:65619598-65619617 | None:intergenic | 60.0% |
| GACATCGCTTCGCATGGCTG+TGG | - | chr4_3:65620370-65620389 | Msa0656330:CDS | 60.0% | |
| !! | GTGGGGTGGAGTTGGTGATG+AGG | + | chr4_3:65619598-65619617 | None:intergenic | 60.0% |
| GACATCGCTTCGCATGGCTG+TGG | - | chr4_3:65620370-65620389 | Msa0656330:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65619558 | 65620868 | 65619558 | ID=Msa0656330;Name=Msa0656330 |
| chr4_3 | mRNA | 65619558 | 65620868 | 65619558 | ID=Msa0656330-mRNA-1;Parent=Msa0656330;Name=Msa0656330-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|436 |
| chr4_3 | exon | 65619558 | 65620868 | 65619558 | ID=Msa0656330-mRNA-1:exon:18651;Parent=Msa0656330-mRNA-1 |
| chr4_3 | CDS | 65619558 | 65620868 | 65619558 | ID=Msa0656330-mRNA-1:cds;Parent=Msa0656330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
