Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617330 | XP_013446518.1 | 94.898 | 294 | 14 | 1 | 33 | 326 | 20 | 312 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029620 | Msa0617330 | 0.808813 | 2.575118e-50 | -8.615850e-47 |
| Msa0617330 | Msa0700100 | 0.811567 | 6.564310e-51 | -8.615850e-47 |
| Msa0617330 | Msa1317030 | 0.804388 | 2.212135e-49 | -8.615850e-47 |
| Msa0169620 | Msa0617330 | 0.810428 | 1.158308e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617330 | MtrunA17_Chr8g0376951 | 94.898 | 294 | 14 | 1 | 33 | 326 | 20 | 312 | 0.0 | 563 |
| Msa0617330 | MtrunA17_Chr2g0296531 | 40.984 | 244 | 124 | 6 | 91 | 320 | 103 | 340 | 6.17e-55 | 182 |
| Msa0617330 | MtrunA17_Chr2g0323001 | 40.574 | 244 | 125 | 6 | 91 | 320 | 103 | 340 | 1.36e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617330 | AT1G67660.2 | 66.058 | 274 | 81 | 3 | 64 | 325 | 32 | 305 | 5.51e-134 | 383 |
| Msa0617330 | AT1G67660.3 | 66.058 | 274 | 81 | 3 | 64 | 325 | 61 | 334 | 9.10e-134 | 384 |
| Msa0617330 | AT1G67660.1 | 66.058 | 274 | 81 | 3 | 64 | 325 | 82 | 355 | 1.79e-133 | 384 |
| Msa0617330 | AT1G13810.1 | 36.327 | 245 | 136 | 5 | 93 | 322 | 62 | 301 | 1.15e-46 | 160 |
Find 72 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGGGAAGCTTTGTTGTT+AGG | 0.238184 | 4_2:-67794745 | Msa0617330:CDS |
| CTATTACATGCCTCAAGTTC+AGG | 0.257165 | 4_2:-67794917 | Msa0617330:CDS |
| TCAGGGTCAAATGGAGATTA+TGG | 0.260537 | 4_2:-67794899 | Msa0617330:CDS |
| AGTTAAGTGTCCTTATAATA+AGG | 0.269945 | 4_2:-67794980 | Msa0617330:CDS |
| TTGTTAGAAATCGTGAATAT+TGG | 0.278665 | 4_2:-67794819 | Msa0617330:CDS |
| TTCAAAGAAATGCTATGAAT+TGG | 0.293866 | 4_2:-67795152 | Msa0617330:CDS |
| TTAGTACTGCATTAGGGTTT+TGG | 0.302003 | 4_2:-67795245 | Msa0617330:CDS |
| TGTTCTTGGTACCGGAATAT+TGG | 0.306883 | 4_2:-67795004 | Msa0617330:CDS |
| TCAGGCTTACCCTTATTATA+AGG | 0.309587 | 4_2:+67794970 | None:intergenic |
| ACCCATCTTCGCTATTTGAT+TGG | 0.333833 | 4_2:-67795879 | Msa0617330:CDS |
| AACAACAAAGCTTCCCTTGC+CGG | 0.335954 | 4_2:+67794748 | None:intergenic |
| ATGGGATTCTCAGAGAGTTT+TGG | 0.342835 | 4_2:-67794786 | Msa0617330:CDS |
| CAAGGGAAGCTTTGTTGTTA+GGG | 0.349473 | 4_2:-67794744 | Msa0617330:CDS |
| TCAAAGAAATGCTATGAATT+GGG | 0.356628 | 4_2:-67795151 | Msa0617330:CDS |
| AGCACATTTAGTACTGCATT+AGG | 0.371913 | 4_2:-67795252 | Msa0617330:CDS |
| GCGTCGCCTGACGGTGTTCT+TGG | 0.374201 | 4_2:-67795018 | Msa0617330:CDS |
| TGTTAGAAATCGTGAATATT+GGG | 0.374315 | 4_2:-67794818 | Msa0617330:CDS |
| TTCCGCAACGTTCGGAAGAA+TGG | 0.380577 | 4_2:-67795305 | Msa0617330:CDS |
| ACACTTAACTTCCAATATTC+CGG | 0.387205 | 4_2:+67794993 | None:intergenic |
| AATGGGTTGATTTGTATTGT+TGG | 0.389762 | 4_2:-67794870 | Msa0617330:CDS |
| TTCCATGGCAAACCTGTCTC+AGG | 0.395522 | 4_2:+67794952 | None:intergenic |
| ATTCGAAACAGTCTTATGAT+TGG | 0.396472 | 4_2:-67795047 | Msa0617330:CDS |
| GCACATTTAGTACTGCATTA+GGG | 0.406562 | 4_2:-67795251 | Msa0617330:CDS |
| TTGGTGGGAAAACGTGATTC+CGG | 0.412330 | 4_2:-67794767 | Msa0617330:CDS |
| CCTAGCAGAATTAAGCCATA+TGG | 0.413449 | 4_2:-67795447 | Msa0617330:CDS |
| GGCCGATGTTCCGCAACGTT+CGG | 0.416231 | 4_2:-67795313 | Msa0617330:CDS |
| GCCTCAAGTTCAGGGTCAAA+TGG | 0.417390 | 4_2:-67794908 | Msa0617330:CDS |
| CGAAATATAGTACTTCCATT+TGG | 0.450018 | 4_2:+67794844 | None:intergenic |
| GTTGTTAGGGTCTAAAGATC+AGG | 0.451891 | 4_2:-67794731 | Msa0617330:CDS |
| CTCCAATCAAATAGCGAAGA+TGG | 0.453180 | 4_2:+67795877 | None:intergenic |
| TGGTGAGGTAGTAGTACATA+TGG | 0.459125 | 4_2:+67795401 | None:intergenic |
| GTTAAGTGTCCTTATAATAA+GGG | 0.460463 | 4_2:-67794979 | Msa0617330:CDS |
| GTCAATTTATGTGTAGATGC+AGG | 0.462525 | 4_2:+67794694 | None:intergenic |
| TGGGAGGGAGGTGACTTCGA+TGG | 0.467844 | 4_2:-67795082 | Msa0617330:CDS |
| AGCATTTGCTTCACCGGCAC+CGG | 0.470494 | 4_2:-67795334 | Msa0617330:CDS |
| GGGAGGGAGGTGACTTCGAT+GGG | 0.473979 | 4_2:-67795081 | Msa0617330:CDS |
| TATTACATGCCTCAAGTTCA+GGG | 0.475534 | 4_2:-67794916 | Msa0617330:CDS |
| ATTTACAGCATTTGCTTCAC+CGG | 0.476975 | 4_2:-67795340 | Msa0617330:CDS |
| GCATCTACACATAAATTGAC+TGG | 0.483317 | 4_2:-67794691 | Msa0617330:CDS |
| CCGGAAAACGCGAACGGAGC+TGG | 0.484615 | 4_2:-67795835 | Msa0617330:CDS |
| AAAGAAGTTGTTGATGATGT+TGG | 0.484625 | 4_2:+67795381 | None:intergenic |
| TGCGGAACATCGGCCGGTGC+CGG | 0.486267 | 4_2:+67795321 | None:intergenic |
| GAACGTTGCGGAACATCGGC+CGG | 0.493534 | 4_2:+67795315 | None:intergenic |
| AAACAGTCTTATGATTGGCT+TGG | 0.505920 | 4_2:-67795042 | Msa0617330:CDS |
| AATAAGGGTAAGCCTGAGAC+AGG | 0.506865 | 4_2:-67794964 | Msa0617330:CDS |
| TTGTATTGTTGGACGCCAAA+TGG | 0.508428 | 4_2:-67794859 | Msa0617330:CDS |
| TCCATTTGACCCTGAACTTG+AGG | 0.510243 | 4_2:+67794907 | None:intergenic |
| CTATTATGCAGAGAAATTGC+AGG | 0.517198 | 4_2:-67794625 | Msa0617330:CDS |
| GAATATTGGGATATAATACA+TGG | 0.523100 | 4_2:-67794805 | Msa0617330:CDS |
| CGGAGCTGGTTCTCTTCCGC+CGG | 0.526155 | 4_2:-67795821 | Msa0617330:CDS |
| CCATATGGCTTAATTCTGCT+AGG | 0.530559 | 4_2:+67795447 | None:intergenic |
| TGGCTTGGCGCGTCGCCTGA+CGG | 0.530902 | 4_2:-67795027 | Msa0617330:CDS |
| AGAATGGTTCGCTCTTCGTA+AGG | 0.534956 | 4_2:-67795289 | Msa0617330:CDS |
| CCGGTACCAAGAACACCGTC+AGG | 0.549096 | 4_2:+67795012 | None:intergenic |
| CCTGACGGTGTTCTTGGTAC+CGG | 0.552937 | 4_2:-67795012 | Msa0617330:CDS |
| CAAAGAAATGCTATGAATTG+GGG | 0.562081 | 4_2:-67795150 | Msa0617330:CDS |
| GGAAAACGTGATTCCGGCAA+GGG | 0.564224 | 4_2:-67794761 | Msa0617330:CDS |
| ACTTGAGGCATGTAATAGAA+TGG | 0.565196 | 4_2:+67794922 | None:intergenic |
| TTCCGAACGTTGCGGAACAT+CGG | 0.575421 | 4_2:+67795311 | None:intergenic |
| GAAGCAAATGCTGTAAATGA+TGG | 0.578930 | 4_2:+67795345 | None:intergenic |
| TCCAATCAAATAGCGAAGAT+GGG | 0.580973 | 4_2:+67795878 | None:intergenic |
| AGCCTGAGACAGGTTTGCCA+TGG | 0.592845 | 4_2:-67794954 | Msa0617330:CDS |
| AACCTGCCGGAAAACGCGAA+CGG | 0.598144 | 4_2:-67795841 | Msa0617330:CDS |
| AACCATTCTTCCGAACGTTG+CGG | 0.616608 | 4_2:+67795303 | None:intergenic |
| ACGCACCGATTTCAACCTGC+CGG | 0.620985 | 4_2:-67795854 | Msa0617330:CDS |
| GGGAAAACGTGATTCCGGCA+AGG | 0.625422 | 4_2:-67794762 | Msa0617330:CDS |
| AGTTGTTGATGATGTTGGTG+AGG | 0.630546 | 4_2:+67795386 | None:intergenic |
| GAATTGGGGAGTGCTTAATG+AGG | 0.644725 | 4_2:-67795136 | Msa0617330:CDS |
| TTGGGGAGTGCTTAATGAGG+CGG | 0.645877 | 4_2:-67795133 | Msa0617330:CDS |
| GTGGTCGTCGTGCTGAGTTG+TGG | 0.647045 | 4_2:-67795218 | Msa0617330:CDS |
| AATATTGGGATATAATACAT+GGG | 0.663115 | 4_2:-67794804 | Msa0617330:CDS |
| GCAAATGCTGTAAATGATGG+AGG | 0.672307 | 4_2:+67795348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAAAATGAAAAG+AGG | + | chr4_2:67794719-67794738 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | - | chr4_2:67795385-67795404 | Msa0617330:CDS | 15.0% |
| !! | TAAAATTGTAAAATGAAAAG+AGG | + | chr4_2:67794719-67794738 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | - | chr4_2:67795385-67795404 | Msa0617330:CDS | 15.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | - | chr4_2:67795384-67795403 | Msa0617330:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | - | chr4_2:67795682-67795701 | Msa0617330:intron | 20.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | - | chr4_2:67795384-67795403 | Msa0617330:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | - | chr4_2:67795682-67795701 | Msa0617330:intron | 20.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | - | chr4_2:67794843-67794862 | Msa0617330:CDS | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | - | chr4_2:67794858-67794877 | Msa0617330:CDS | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | - | chr4_2:67794963-67794982 | Msa0617330:CDS | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | + | chr4_2:67795057-67795076 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | - | chr4_2:67795334-67795353 | Msa0617330:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | - | chr4_2:67795335-67795354 | Msa0617330:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | - | chr4_2:67795506-67795525 | Msa0617330:intron | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | - | chr4_2:67795507-67795526 | Msa0617330:intron | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | - | chr4_2:67795667-67795686 | Msa0617330:intron | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | - | chr4_2:67795668-67795687 | Msa0617330:intron | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | - | chr4_2:67795681-67795700 | Msa0617330:intron | 25.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | - | chr4_2:67794843-67794862 | Msa0617330:CDS | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | - | chr4_2:67794858-67794877 | Msa0617330:CDS | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | - | chr4_2:67794963-67794982 | Msa0617330:CDS | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | + | chr4_2:67795057-67795076 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | - | chr4_2:67795334-67795353 | Msa0617330:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | - | chr4_2:67795335-67795354 | Msa0617330:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | - | chr4_2:67795506-67795525 | Msa0617330:intron | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | - | chr4_2:67795507-67795526 | Msa0617330:intron | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | - | chr4_2:67795667-67795686 | Msa0617330:intron | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | - | chr4_2:67795668-67795687 | Msa0617330:intron | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | - | chr4_2:67795681-67795700 | Msa0617330:intron | 25.0% |
| AAAATGAAAAGAGGAAAACC+TGG | + | chr4_2:67794710-67794729 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | + | chr4_2:67794841-67794860 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | + | chr4_2:67794842-67794861 | None:intergenic | 30.0% | |
| ! | CTTTTGTTAGTTGTGCTTAT+AGG | - | chr4_2:67794904-67794923 | Msa0617330:CDS | 30.0% |
| ! | GTTGATTGGTTATTCAAACA+GGG | - | chr4_2:67794926-67794945 | Msa0617330:CDS | 30.0% |
| !! | AAAGAAGTTGTTGATGATGT+TGG | + | chr4_2:67795108-67795127 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | - | chr4_2:67795336-67795355 | Msa0617330:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | - | chr4_2:67795388-67795407 | Msa0617330:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | - | chr4_2:67795389-67795408 | Msa0617330:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | - | chr4_2:67795439-67795458 | Msa0617330:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | + | chr4_2:67795496-67795515 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | - | chr4_2:67795598-67795617 | Msa0617330:intron | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | - | chr4_2:67795599-67795618 | Msa0617330:intron | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | - | chr4_2:67795616-67795635 | Msa0617330:intron | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | + | chr4_2:67795645-67795664 | None:intergenic | 30.0% | |
| AAAATGAAAAGAGGAAAACC+TGG | + | chr4_2:67794710-67794729 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | + | chr4_2:67794841-67794860 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | + | chr4_2:67794842-67794861 | None:intergenic | 30.0% | |
| ! | CTTTTGTTAGTTGTGCTTAT+AGG | - | chr4_2:67794904-67794923 | Msa0617330:CDS | 30.0% |
| ! | GTTGATTGGTTATTCAAACA+GGG | - | chr4_2:67794926-67794945 | Msa0617330:CDS | 30.0% |
| !! | AAAGAAGTTGTTGATGATGT+TGG | + | chr4_2:67795108-67795127 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | - | chr4_2:67795336-67795355 | Msa0617330:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | - | chr4_2:67795388-67795407 | Msa0617330:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | - | chr4_2:67795389-67795408 | Msa0617330:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | - | chr4_2:67795439-67795458 | Msa0617330:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | + | chr4_2:67795496-67795515 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | - | chr4_2:67795598-67795617 | Msa0617330:intron | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | - | chr4_2:67795599-67795618 | Msa0617330:intron | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | - | chr4_2:67795616-67795635 | Msa0617330:intron | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | + | chr4_2:67795645-67795664 | None:intergenic | 30.0% | |
| TCCAATCAAATAGCGAAGAT+GGG | + | chr4_2:67794611-67794630 | None:intergenic | 35.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | + | chr4_2:67794687-67794706 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | - | chr4_2:67794751-67794770 | Msa0617330:CDS | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | - | chr4_2:67794912-67794931 | Msa0617330:CDS | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | - | chr4_2:67794925-67794944 | Msa0617330:CDS | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | - | chr4_2:67794945-67794964 | Msa0617330:CDS | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | + | chr4_2:67794995-67795014 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | - | chr4_2:67794997-67795016 | Msa0617330:CDS | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | + | chr4_2:67795144-67795163 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | - | chr4_2:67795146-67795165 | Msa0617330:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | - | chr4_2:67795234-67795253 | Msa0617330:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | - | chr4_2:67795235-67795254 | Msa0617330:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | - | chr4_2:67795241-67795260 | Msa0617330:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | - | chr4_2:67795444-67795463 | Msa0617330:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | + | chr4_2:67795519-67795538 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | + | chr4_2:67795552-67795571 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | + | chr4_2:67795567-67795586 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | - | chr4_2:67795570-67795589 | Msa0617330:intron | 35.0% | |
| GTCAATTTATGTGTAGATGC+AGG | + | chr4_2:67795795-67795814 | None:intergenic | 35.0% | |
| GCATCTACACATAAATTGAC+TGG | - | chr4_2:67795795-67795814 | Msa0617330:intron | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | - | chr4_2:67795861-67795880 | Msa0617330:CDS | 35.0% | |
| TCCAATCAAATAGCGAAGAT+GGG | + | chr4_2:67794611-67794630 | None:intergenic | 35.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | + | chr4_2:67794687-67794706 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | - | chr4_2:67794751-67794770 | Msa0617330:CDS | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | - | chr4_2:67794912-67794931 | Msa0617330:CDS | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | - | chr4_2:67794925-67794944 | Msa0617330:CDS | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | - | chr4_2:67794945-67794964 | Msa0617330:CDS | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | + | chr4_2:67794995-67795014 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | - | chr4_2:67794997-67795016 | Msa0617330:CDS | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | + | chr4_2:67795144-67795163 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | - | chr4_2:67795146-67795165 | Msa0617330:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | - | chr4_2:67795234-67795253 | Msa0617330:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | - | chr4_2:67795235-67795254 | Msa0617330:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | - | chr4_2:67795241-67795260 | Msa0617330:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | - | chr4_2:67795444-67795463 | Msa0617330:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | + | chr4_2:67795519-67795538 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | + | chr4_2:67795552-67795571 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | + | chr4_2:67795567-67795586 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | - | chr4_2:67795570-67795589 | Msa0617330:intron | 35.0% | |
| GTCAATTTATGTGTAGATGC+AGG | + | chr4_2:67795795-67795814 | None:intergenic | 35.0% | |
| GCATCTACACATAAATTGAC+TGG | - | chr4_2:67795795-67795814 | Msa0617330:intron | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | - | chr4_2:67795861-67795880 | Msa0617330:CDS | 35.0% | |
| ACCCATCTTCGCTATTTGAT+TGG | - | chr4_2:67794607-67794626 | Msa0617330:CDS | 40.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | + | chr4_2:67794612-67794631 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | - | chr4_2:67794689-67794708 | Msa0617330:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | - | chr4_2:67794774-67794793 | Msa0617330:CDS | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | - | chr4_2:67794775-67794794 | Msa0617330:CDS | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | + | chr4_2:67795042-67795061 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | - | chr4_2:67795039-67795058 | Msa0617330:CDS | 40.0% | |
| TGGTGAGGTAGTAGTACATA+TGG | + | chr4_2:67795088-67795107 | None:intergenic | 40.0% | |
| !! | AGTTGTTGATGATGTTGGTG+AGG | + | chr4_2:67795103-67795122 | None:intergenic | 40.0% |
| GCAAATGCTGTAAATGATGG+AGG | + | chr4_2:67795141-67795160 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | - | chr4_2:67795246-67795265 | Msa0617330:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | - | chr4_2:67795392-67795411 | Msa0617330:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | - | chr4_2:67795482-67795501 | Msa0617330:intron | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | - | chr4_2:67795569-67795588 | Msa0617330:intron | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | - | chr4_2:67795587-67795606 | Msa0617330:intron | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | - | chr4_2:67795627-67795646 | Msa0617330:intron | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | - | chr4_2:67795700-67795719 | Msa0617330:intron | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | - | chr4_2:67795704-67795723 | Msa0617330:intron | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | - | chr4_2:67795742-67795761 | Msa0617330:intron | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | - | chr4_2:67795755-67795774 | Msa0617330:intron | 40.0% | |
| ACCCATCTTCGCTATTTGAT+TGG | - | chr4_2:67794607-67794626 | Msa0617330:CDS | 40.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | + | chr4_2:67794612-67794631 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | - | chr4_2:67794689-67794708 | Msa0617330:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | - | chr4_2:67794774-67794793 | Msa0617330:CDS | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | - | chr4_2:67794775-67794794 | Msa0617330:CDS | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | + | chr4_2:67795042-67795061 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | - | chr4_2:67795039-67795058 | Msa0617330:CDS | 40.0% | |
| TGGTGAGGTAGTAGTACATA+TGG | + | chr4_2:67795088-67795107 | None:intergenic | 40.0% | |
| !! | AGTTGTTGATGATGTTGGTG+AGG | + | chr4_2:67795103-67795122 | None:intergenic | 40.0% |
| GCAAATGCTGTAAATGATGG+AGG | + | chr4_2:67795141-67795160 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | - | chr4_2:67795246-67795265 | Msa0617330:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | - | chr4_2:67795392-67795411 | Msa0617330:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | - | chr4_2:67795482-67795501 | Msa0617330:intron | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | - | chr4_2:67795569-67795588 | Msa0617330:intron | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | - | chr4_2:67795587-67795606 | Msa0617330:intron | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | - | chr4_2:67795627-67795646 | Msa0617330:intron | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | - | chr4_2:67795700-67795719 | Msa0617330:intron | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | - | chr4_2:67795704-67795723 | Msa0617330:intron | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | - | chr4_2:67795742-67795761 | Msa0617330:intron | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | - | chr4_2:67795755-67795774 | Msa0617330:intron | 40.0% | |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | + | chr4_2:67794640-67794659 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | + | chr4_2:67794684-67794703 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | - | chr4_2:67794773-67794792 | Msa0617330:CDS | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | + | chr4_2:67795186-67795205 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | - | chr4_2:67795197-67795216 | Msa0617330:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | - | chr4_2:67795249-67795268 | Msa0617330:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | - | chr4_2:67795350-67795369 | Msa0617330:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | - | chr4_2:67795522-67795541 | Msa0617330:intron | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | + | chr4_2:67795582-67795601 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | - | chr4_2:67795703-67795722 | Msa0617330:intron | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | - | chr4_2:67795719-67795738 | Msa0617330:intron | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | + | chr4_2:67795741-67795760 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | - | chr4_2:67795741-67795760 | Msa0617330:intron | 45.0% |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | + | chr4_2:67794640-67794659 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | + | chr4_2:67794684-67794703 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | - | chr4_2:67794773-67794792 | Msa0617330:CDS | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | + | chr4_2:67795186-67795205 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | - | chr4_2:67795197-67795216 | Msa0617330:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | - | chr4_2:67795249-67795268 | Msa0617330:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | - | chr4_2:67795350-67795369 | Msa0617330:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | - | chr4_2:67795522-67795541 | Msa0617330:intron | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | + | chr4_2:67795582-67795601 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | - | chr4_2:67795703-67795722 | Msa0617330:intron | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | - | chr4_2:67795719-67795738 | Msa0617330:intron | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | + | chr4_2:67795741-67795760 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | - | chr4_2:67795741-67795760 | Msa0617330:intron | 45.0% |
| TCTCTTGTATGCGGCTGAGA+GGG | - | chr4_2:67794760-67794779 | Msa0617330:CDS | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | - | chr4_2:67794797-67794816 | Msa0617330:CDS | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | - | chr4_2:67794806-67794825 | Msa0617330:CDS | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | - | chr4_2:67794813-67794832 | Msa0617330:CDS | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | - | chr4_2:67794833-67794852 | Msa0617330:CDS | 50.0% | |
| TTCCGAACGTTGCGGAACAT+CGG | + | chr4_2:67795178-67795197 | None:intergenic | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | - | chr4_2:67795181-67795200 | Msa0617330:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | - | chr4_2:67795353-67795372 | Msa0617330:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | + | chr4_2:67795537-67795556 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | - | chr4_2:67795578-67795597 | Msa0617330:intron | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | - | chr4_2:67795725-67795744 | Msa0617330:intron | 50.0% | |
| TCTCTTGTATGCGGCTGAGA+GGG | - | chr4_2:67794760-67794779 | Msa0617330:CDS | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | - | chr4_2:67794797-67794816 | Msa0617330:CDS | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | - | chr4_2:67794806-67794825 | Msa0617330:CDS | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | - | chr4_2:67794813-67794832 | Msa0617330:CDS | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | - | chr4_2:67794833-67794852 | Msa0617330:CDS | 50.0% | |
| TTCCGAACGTTGCGGAACAT+CGG | + | chr4_2:67795178-67795197 | None:intergenic | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | - | chr4_2:67795181-67795200 | Msa0617330:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | - | chr4_2:67795353-67795372 | Msa0617330:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | + | chr4_2:67795537-67795556 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | - | chr4_2:67795578-67795597 | Msa0617330:intron | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | - | chr4_2:67795725-67795744 | Msa0617330:intron | 50.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | - | chr4_2:67794632-67794651 | Msa0617330:CDS | 55.0% |
| AACCTGCCGGAAAACGCGAA+CGG | - | chr4_2:67794645-67794664 | Msa0617330:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | - | chr4_2:67794759-67794778 | Msa0617330:CDS | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | + | chr4_2:67794804-67794823 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | - | chr4_2:67795152-67795171 | Msa0617330:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | - | chr4_2:67795474-67795493 | Msa0617330:intron | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | - | chr4_2:67795532-67795551 | Msa0617330:intron | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | - | chr4_2:67795724-67795743 | Msa0617330:intron | 55.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | - | chr4_2:67794632-67794651 | Msa0617330:CDS | 55.0% |
| AACCTGCCGGAAAACGCGAA+CGG | - | chr4_2:67794645-67794664 | Msa0617330:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | - | chr4_2:67794759-67794778 | Msa0617330:CDS | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | + | chr4_2:67794804-67794823 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | - | chr4_2:67795152-67795171 | Msa0617330:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | - | chr4_2:67795474-67795493 | Msa0617330:intron | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | - | chr4_2:67795532-67795551 | Msa0617330:intron | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | - | chr4_2:67795724-67795743 | Msa0617330:intron | 55.0% | |
| ! | CCAGCTCCGTTCGCGTTTTC+CGG | + | chr4_2:67794654-67794673 | None:intergenic | 60.0% |
| GAACGTTGCGGAACATCGGC+CGG | + | chr4_2:67795174-67795193 | None:intergenic | 60.0% | |
| GGCCGATGTTCCGCAACGTT+CGG | - | chr4_2:67795173-67795192 | Msa0617330:CDS | 60.0% | |
| GTGGTCGTCGTGCTGAGTTG+TGG | - | chr4_2:67795268-67795287 | Msa0617330:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | - | chr4_2:67795404-67795423 | Msa0617330:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | - | chr4_2:67795405-67795424 | Msa0617330:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | + | chr4_2:67795477-67795496 | None:intergenic | 60.0% | |
| ! | CCAGCTCCGTTCGCGTTTTC+CGG | + | chr4_2:67794654-67794673 | None:intergenic | 60.0% |
| GAACGTTGCGGAACATCGGC+CGG | + | chr4_2:67795174-67795193 | None:intergenic | 60.0% | |
| GGCCGATGTTCCGCAACGTT+CGG | - | chr4_2:67795173-67795192 | Msa0617330:CDS | 60.0% | |
| GTGGTCGTCGTGCTGAGTTG+TGG | - | chr4_2:67795268-67795287 | Msa0617330:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | - | chr4_2:67795404-67795423 | Msa0617330:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | - | chr4_2:67795405-67795424 | Msa0617330:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | + | chr4_2:67795477-67795496 | None:intergenic | 60.0% | |
| ! | CTCCGTTCGCGTTTTCCGGC+AGG | + | chr4_2:67794650-67794669 | None:intergenic | 65.0% |
| CCGGAAAACGCGAACGGAGC+TGG | - | chr4_2:67794651-67794670 | Msa0617330:CDS | 65.0% | |
| ! | CGGAGCTGGTTCTCTTCCGC+CGG | - | chr4_2:67794665-67794684 | Msa0617330:CDS | 65.0% |
| TGCAGGGAACCGCACACCAC+TGG | + | chr4_2:67794825-67794844 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | - | chr4_2:67795468-67795487 | Msa0617330:intron | 65.0% | |
| ! | CTCCGTTCGCGTTTTCCGGC+AGG | + | chr4_2:67794650-67794669 | None:intergenic | 65.0% |
| CCGGAAAACGCGAACGGAGC+TGG | - | chr4_2:67794651-67794670 | Msa0617330:CDS | 65.0% | |
| ! | CGGAGCTGGTTCTCTTCCGC+CGG | - | chr4_2:67794665-67794684 | Msa0617330:CDS | 65.0% |
| TGCAGGGAACCGCACACCAC+TGG | + | chr4_2:67794825-67794844 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | - | chr4_2:67795468-67795487 | Msa0617330:intron | 65.0% | |
| TGCGGAACATCGGCCGGTGC+CGG | + | chr4_2:67795168-67795187 | None:intergenic | 70.0% | |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | - | chr4_2:67795459-67795478 | Msa0617330:CDS | 70.0% |
| TGCGGAACATCGGCCGGTGC+CGG | + | chr4_2:67795168-67795187 | None:intergenic | 70.0% | |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | - | chr4_2:67795459-67795478 | Msa0617330:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 67794606 | 67795902 | 67794606 | ID=Msa0617330;Name=Msa0617330 |
| chr4_2 | mRNA | 67794606 | 67795902 | 67794606 | ID=Msa0617330-mRNA-1;Parent=Msa0617330;Name=Msa0617330-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0|2|0|326 |
| chr4_2 | exon | 67795798 | 67795902 | 67795798 | ID=Msa0617330-mRNA-1:exon:19452;Parent=Msa0617330-mRNA-1 |
| chr4_2 | exon | 67794606 | 67795478 | 67794606 | ID=Msa0617330-mRNA-1:exon:19451;Parent=Msa0617330-mRNA-1 |
| chr4_2 | CDS | 67795798 | 67795902 | 67795798 | ID=Msa0617330-mRNA-1:cds;Parent=Msa0617330-mRNA-1 |
| chr4_2 | CDS | 67794606 | 67795478 | 67794606 | ID=Msa0617330-mRNA-1:cds;Parent=Msa0617330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
