Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700100 | XP_013446518.1 | 94.898 | 294 | 14 | 1 | 32 | 325 | 20 | 312 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700100 | A0A072U3X8 | 94.898 | 294 | 14 | 1 | 32 | 325 | 20 | 312 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0700100 | -0.809224 | 2.103504e-50 | -8.615850e-47 |
| Msa0003470 | Msa0700100 | 0.812199 | 4.780551e-51 | -8.615850e-47 |
| Msa0617330 | Msa0700100 | 0.811567 | 6.564310e-51 | -8.615850e-47 |
| Msa0656300 | Msa0700100 | 0.850014 | 2.232500e-60 | -8.615850e-47 |
| Msa0669220 | Msa0700100 | 0.817057 | 4.016357e-52 | -8.615850e-47 |
| Msa0669850 | Msa0700100 | 0.801245 | 9.860551e-49 | -8.615850e-47 |
| Msa0700100 | Msa0852730 | 0.822891 | 1.858328e-53 | -8.615850e-47 |
| Msa0700100 | Msa0877420 | 0.811382 | 7.199829e-51 | -8.615850e-47 |
| Msa0700100 | Msa0942730 | 0.838234 | 3.245420e-57 | -8.615850e-47 |
| Msa0700100 | Msa1002040 | 0.803188 | 3.928237e-49 | -8.615850e-47 |
| Msa0700100 | Msa1397050 | 0.819883 | 9.190293e-53 | -8.615850e-47 |
| Msa0145950 | Msa0700100 | 0.813291 | 2.757725e-51 | -8.615850e-47 |
| Msa0146470 | Msa0700100 | 0.800417 | 1.455162e-48 | -8.615850e-47 |
| Msa0469910 | Msa0700100 | -0.816982 | 4.175334e-52 | -8.615850e-47 |
| Msa0590680 | Msa0700100 | 0.820869 | 5.461591e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700100 | MtrunA17_Chr8g0376951 | 94.898 | 294 | 14 | 1 | 32 | 325 | 20 | 312 | 0.0 | 563 |
| Msa0700100 | MtrunA17_Chr2g0296531 | 40.984 | 244 | 124 | 6 | 90 | 319 | 103 | 340 | 5.67e-55 | 182 |
| Msa0700100 | MtrunA17_Chr2g0323001 | 40.574 | 244 | 125 | 6 | 90 | 319 | 103 | 340 | 1.45e-53 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700100 | AT1G67660.2 | 66.058 | 274 | 81 | 3 | 63 | 324 | 32 | 305 | 5.39e-134 | 383 |
| Msa0700100 | AT1G67660.3 | 66.058 | 274 | 81 | 3 | 63 | 324 | 61 | 334 | 8.52e-134 | 384 |
| Msa0700100 | AT1G67660.1 | 66.058 | 274 | 81 | 3 | 63 | 324 | 82 | 355 | 1.68e-133 | 384 |
| Msa0700100 | AT1G13810.1 | 36.327 | 245 | 136 | 5 | 92 | 321 | 62 | 301 | 1.21e-46 | 160 |
Find 72 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGGGAAGCTTTGTTGTT+AGG | 0.238184 | 4_4:+70985072 | Msa0700100:CDS |
| CTATTACATGCCTCAAGTTC+AGG | 0.257165 | 4_4:+70984900 | Msa0700100:CDS |
| TCAGGGTCAAATGGAGATTA+TGG | 0.260537 | 4_4:+70984918 | Msa0700100:CDS |
| AGTTAAGTGTCCTTATAATA+AGG | 0.269945 | 4_4:+70984837 | Msa0700100:CDS |
| TTGTTAGAAATCGTGAATAT+TGG | 0.278665 | 4_4:+70984998 | Msa0700100:CDS |
| TTCAAAGAAATGCTATGAAT+TGG | 0.293866 | 4_4:+70984665 | Msa0700100:CDS |
| TTAGTACTGCATTAGGGTTT+TGG | 0.302003 | 4_4:+70984572 | Msa0700100:CDS |
| TGTTCTTGGTACCGGAATAT+TGG | 0.306883 | 4_4:+70984813 | Msa0700100:CDS |
| TCAGGCTTACCCTTATTATA+AGG | 0.309587 | 4_4:-70984847 | None:intergenic |
| ACCCATCTTCGCTATTTGAT+TGG | 0.333833 | 4_4:+70983930 | None:intergenic |
| AACAACAAAGCTTCCCTTGC+CGG | 0.335954 | 4_4:-70985069 | None:intergenic |
| ATGGGATTCTCAGAGAGTTT+TGG | 0.342835 | 4_4:+70985031 | Msa0700100:CDS |
| CAAGGGAAGCTTTGTTGTTA+GGG | 0.349473 | 4_4:+70985073 | Msa0700100:CDS |
| TCAAAGAAATGCTATGAATT+GGG | 0.356628 | 4_4:+70984666 | Msa0700100:CDS |
| AGCACATTTAGTACTGCATT+AGG | 0.371913 | 4_4:+70984565 | Msa0700100:CDS |
| GCGTCGCCTGACGGTGTTCT+TGG | 0.374201 | 4_4:+70984799 | Msa0700100:CDS |
| TGTTAGAAATCGTGAATATT+GGG | 0.374315 | 4_4:+70984999 | Msa0700100:CDS |
| TTCCGCAACGTTCGGAAGAA+TGG | 0.380577 | 4_4:+70984512 | Msa0700100:CDS |
| ACACTTAACTTCCAATATTC+CGG | 0.387205 | 4_4:-70984824 | None:intergenic |
| AATGGGTTGATTTGTATTGT+TGG | 0.389762 | 4_4:+70984947 | Msa0700100:CDS |
| TTCCATGGCAAACCTGTCTC+AGG | 0.395522 | 4_4:-70984865 | None:intergenic |
| ATTCGAAACAGTCTTATGAT+TGG | 0.396472 | 4_4:+70984770 | Msa0700100:CDS |
| GCACATTTAGTACTGCATTA+GGG | 0.406562 | 4_4:+70984566 | Msa0700100:CDS |
| TTGGTGGGAAAACGTGATTC+CGG | 0.412330 | 4_4:+70985050 | Msa0700100:CDS |
| CCTAGCAGAATTAAGCCATA+TGG | 0.413449 | 4_4:+70984370 | Msa0700100:CDS |
| GCCTCAAGTTCAGGGTCAAA+TGG | 0.417390 | 4_4:+70984909 | Msa0700100:CDS |
| CGAAATATAGTACTTCCATT+TGG | 0.450018 | 4_4:-70984973 | None:intergenic |
| GTTGTTAGGGTCTAAAGATC+AGG | 0.451891 | 4_4:+70985086 | Msa0700100:CDS |
| GGCTGATGTTCCGCAACGTT+CGG | 0.452606 | 4_4:+70984504 | Msa0700100:CDS |
| CTCCAATCAAATAGCGAAGA+TGG | 0.453180 | 4_4:-70983932 | None:intergenic |
| TGGTGAGGTAGTAGTACATA+TGG | 0.459125 | 4_4:-70984416 | None:intergenic |
| GTTAAGTGTCCTTATAATAA+GGG | 0.460463 | 4_4:+70984838 | Msa0700100:CDS |
| TGGGAGGGAGGTGACTTCGA+TGG | 0.467844 | 4_4:+70984735 | Msa0700100:CDS |
| GGGAGGGAGGTGACTTCGAT+GGG | 0.473979 | 4_4:+70984736 | Msa0700100:CDS |
| TATTACATGCCTCAAGTTCA+GGG | 0.475534 | 4_4:+70984901 | Msa0700100:CDS |
| AGCATTTGCTTCACCGGCAC+CGG | 0.476435 | 4_4:+70984483 | Msa0700100:CDS |
| ATTTACAGCATTTGCTTCAC+CGG | 0.476975 | 4_4:+70984477 | Msa0700100:CDS |
| GCCTCTACACATAAATTGAC+TGG | 0.480024 | 4_4:+70985126 | Msa0700100:CDS |
| CCGGAAAACGCGAACGGAGC+TGG | 0.484615 | 4_4:+70983974 | Msa0700100:CDS |
| AAAGAAGTTGTTGATGATGT+TGG | 0.484625 | 4_4:-70984436 | None:intergenic |
| GAACGTTGCGGAACATCAGC+CGG | 0.496988 | 4_4:-70984502 | None:intergenic |
| TGCGGAACATCAGCCGGTGC+CGG | 0.504036 | 4_4:-70984496 | None:intergenic |
| AAACAGTCTTATGATTGGCT+TGG | 0.505920 | 4_4:+70984775 | Msa0700100:CDS |
| GTCAATTTATGTGTAGAGGC+AGG | 0.506154 | 4_4:-70985123 | None:intergenic |
| AATAAGGGTAAGCCTGAGAC+AGG | 0.506865 | 4_4:+70984853 | Msa0700100:CDS |
| TTGTATTGTTGGACGCCAAA+TGG | 0.508428 | 4_4:+70984958 | Msa0700100:CDS |
| TCCATTTGACCCTGAACTTG+AGG | 0.510243 | 4_4:-70984910 | None:intergenic |
| CTATTATGCAGAGAAATTGC+AGG | 0.517198 | 4_4:+70985192 | Msa0700100:CDS |
| GAATATTGGGATATAATACA+TGG | 0.523100 | 4_4:+70985012 | Msa0700100:CDS |
| CGGAGCTGGTTCTCTTCCGC+CGG | 0.526155 | 4_4:+70983988 | Msa0700100:CDS |
| CCATATGGCTTAATTCTGCT+AGG | 0.530559 | 4_4:-70984370 | None:intergenic |
| TGGCTTGGCGCGTCGCCTGA+CGG | 0.530902 | 4_4:+70984790 | Msa0700100:CDS |
| AGAATGGTTCGCTCTTCGTA+AGG | 0.534956 | 4_4:+70984528 | Msa0700100:CDS |
| CCGGTACCAAGAACACCGTC+AGG | 0.549096 | 4_4:-70984805 | None:intergenic |
| TCCAGTCAATTTATGTGTAG+AGG | 0.552337 | 4_4:-70985127 | None:intergenic |
| CCTGACGGTGTTCTTGGTAC+CGG | 0.552937 | 4_4:+70984805 | Msa0700100:CDS |
| CAAAGAAATGCTATGAATTG+GGG | 0.562081 | 4_4:+70984667 | Msa0700100:CDS |
| GGAAAACGTGATTCCGGCAA+GGG | 0.564224 | 4_4:+70985056 | Msa0700100:CDS |
| ACTTGAGGCATGTAATAGAA+TGG | 0.565196 | 4_4:-70984895 | None:intergenic |
| GAAGCAAATGCTGTAAATGA+TGG | 0.578930 | 4_4:-70984472 | None:intergenic |
| TCCAATCAAATAGCGAAGAT+GGG | 0.580973 | 4_4:-70983931 | None:intergenic |
| AGCCTGAGACAGGTTTGCCA+TGG | 0.592845 | 4_4:+70984863 | Msa0700100:CDS |
| AACCTGCCGGAAAACGCGAA+CGG | 0.598144 | 4_4:+70983968 | Msa0700100:CDS |
| AACCATTCTTCCGAACGTTG+CGG | 0.616608 | 4_4:-70984514 | None:intergenic |
| ACGCACCGATTTCAACCTGC+CGG | 0.620985 | 4_4:+70983955 | Msa0700100:CDS |
| GGGAAAACGTGATTCCGGCA+AGG | 0.625422 | 4_4:+70985055 | Msa0700100:CDS |
| AGTTGTTGATGATGTTGGTG+AGG | 0.630546 | 4_4:-70984431 | None:intergenic |
| GAATTGGGGAGTGCTTAATG+AGG | 0.644725 | 4_4:+70984681 | Msa0700100:CDS |
| TTGGGGAGTGCTTAATGAGG+CGG | 0.645877 | 4_4:+70984684 | Msa0700100:CDS |
| GTGGTCGTCGTGCTGAGTTG+TGG | 0.647045 | 4_4:+70984599 | Msa0700100:CDS |
| AATATTGGGATATAATACAT+GGG | 0.663115 | 4_4:+70985013 | Msa0700100:CDS |
| GCAAATGCTGTAAATGATGG+AGG | 0.672307 | 4_4:-70984469 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTGTAAAATGAAAAG+AGG | - | chr4_4:70984042-70984061 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | + | chr4_4:70984716-70984735 | Msa0700100:CDS | 15.0% |
| !! | TAAAATTGTAAAATGAAAAG+AGG | - | chr4_4:70984042-70984061 | None:intergenic | 15.0% |
| !!! | AAAAGTATACAAAAATTACT+GGG | + | chr4_4:70984716-70984735 | Msa0700100:CDS | 15.0% |
| !! | ATAAAAATAGTTGTGCTTAT+AGG | + | chr4_4:70984235-70984254 | Msa0700100:intron | 20.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | + | chr4_4:70984715-70984734 | Msa0700100:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | + | chr4_4:70985013-70985032 | Msa0700100:CDS | 20.0% |
| !! | ATAAAAATAGTTGTGCTTAT+AGG | + | chr4_4:70984235-70984254 | Msa0700100:intron | 20.0% |
| !!! | GAAAAGTATACAAAAATTAC+TGG | + | chr4_4:70984715-70984734 | Msa0700100:CDS | 20.0% |
| !! | AATATTGGGATATAATACAT+GGG | + | chr4_4:70985013-70985032 | Msa0700100:CDS | 20.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | + | chr4_4:70984166-70984185 | Msa0700100:intron | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | + | chr4_4:70984181-70984200 | Msa0700100:intron | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | + | chr4_4:70984294-70984313 | Msa0700100:intron | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | - | chr4_4:70984388-70984407 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | + | chr4_4:70984665-70984684 | Msa0700100:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | + | chr4_4:70984666-70984685 | Msa0700100:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | + | chr4_4:70984837-70984856 | Msa0700100:CDS | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | + | chr4_4:70984838-70984857 | Msa0700100:CDS | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | + | chr4_4:70984998-70985017 | Msa0700100:CDS | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | + | chr4_4:70984999-70985018 | Msa0700100:CDS | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | + | chr4_4:70985012-70985031 | Msa0700100:CDS | 25.0% |
| !!! | CAATCAGTTATGGTTTTATT+TGG | + | chr4_4:70984166-70984185 | Msa0700100:intron | 25.0% |
| !! | TTATTTGGCTTATAGCTTAT+AGG | + | chr4_4:70984181-70984200 | Msa0700100:intron | 25.0% |
| ! | AATGGATATGAGAATTTCAT+CGG | + | chr4_4:70984294-70984313 | Msa0700100:intron | 25.0% |
| !! | CTAAAATGATCTTTTCCATA+TGG | - | chr4_4:70984388-70984407 | None:intergenic | 25.0% |
| ! | TTCAAAGAAATGCTATGAAT+TGG | + | chr4_4:70984665-70984684 | Msa0700100:CDS | 25.0% |
| ! | TCAAAGAAATGCTATGAATT+GGG | + | chr4_4:70984666-70984685 | Msa0700100:CDS | 25.0% |
| ! | AGTTAAGTGTCCTTATAATA+AGG | + | chr4_4:70984837-70984856 | Msa0700100:CDS | 25.0% |
| ! | GTTAAGTGTCCTTATAATAA+GGG | + | chr4_4:70984838-70984857 | Msa0700100:CDS | 25.0% |
| ! | TTGTTAGAAATCGTGAATAT+TGG | + | chr4_4:70984998-70985017 | Msa0700100:CDS | 25.0% |
| ! | TGTTAGAAATCGTGAATATT+GGG | + | chr4_4:70984999-70985018 | Msa0700100:CDS | 25.0% |
| ! | GAATATTGGGATATAATACA+TGG | + | chr4_4:70985012-70985031 | Msa0700100:CDS | 25.0% |
| AAAATGAAAAGAGGAAAACC+TGG | - | chr4_4:70984033-70984052 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | - | chr4_4:70984164-70984183 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | - | chr4_4:70984165-70984184 | None:intergenic | 30.0% | |
| ! | GTTGATTGGTTATTCAAACA+GGG | + | chr4_4:70984257-70984276 | Msa0700100:intron | 30.0% |
| !! | AAAGAAGTTGTTGATGATGT+TGG | - | chr4_4:70984439-70984458 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | + | chr4_4:70984667-70984686 | Msa0700100:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | + | chr4_4:70984719-70984738 | Msa0700100:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | + | chr4_4:70984720-70984739 | Msa0700100:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | + | chr4_4:70984770-70984789 | Msa0700100:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | - | chr4_4:70984827-70984846 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | + | chr4_4:70984929-70984948 | Msa0700100:CDS | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | + | chr4_4:70984930-70984949 | Msa0700100:CDS | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | + | chr4_4:70984947-70984966 | Msa0700100:CDS | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | - | chr4_4:70984976-70984995 | None:intergenic | 30.0% | |
| AAAATGAAAAGAGGAAAACC+TGG | - | chr4_4:70984033-70984052 | None:intergenic | 30.0% | |
| TAAAACCATAACTGATTGCA+GGG | - | chr4_4:70984164-70984183 | None:intergenic | 30.0% | |
| ATAAAACCATAACTGATTGC+AGG | - | chr4_4:70984165-70984184 | None:intergenic | 30.0% | |
| ! | GTTGATTGGTTATTCAAACA+GGG | + | chr4_4:70984257-70984276 | Msa0700100:intron | 30.0% |
| !! | AAAGAAGTTGTTGATGATGT+TGG | - | chr4_4:70984439-70984458 | None:intergenic | 30.0% |
| CAAAGAAATGCTATGAATTG+GGG | + | chr4_4:70984667-70984686 | Msa0700100:CDS | 30.0% | |
| AGTATACAAAAATTACTGGG+AGG | + | chr4_4:70984719-70984738 | Msa0700100:CDS | 30.0% | |
| GTATACAAAAATTACTGGGA+GGG | + | chr4_4:70984720-70984739 | Msa0700100:CDS | 30.0% | |
| ! | ATTCGAAACAGTCTTATGAT+TGG | + | chr4_4:70984770-70984789 | Msa0700100:CDS | 30.0% |
| ACACTTAACTTCCAATATTC+CGG | - | chr4_4:70984827-70984846 | None:intergenic | 30.0% | |
| ! | TGGAGATTATGGATTTTGAA+TGG | + | chr4_4:70984929-70984948 | Msa0700100:CDS | 30.0% |
| ! | GGAGATTATGGATTTTGAAT+GGG | + | chr4_4:70984930-70984949 | Msa0700100:CDS | 30.0% |
| !! | AATGGGTTGATTTGTATTGT+TGG | + | chr4_4:70984947-70984966 | Msa0700100:CDS | 30.0% |
| CGAAATATAGTACTTCCATT+TGG | - | chr4_4:70984976-70984995 | None:intergenic | 30.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | - | chr4_4:70984010-70984029 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | + | chr4_4:70984074-70984093 | Msa0700100:intron | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | + | chr4_4:70984243-70984262 | Msa0700100:intron | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | + | chr4_4:70984256-70984275 | Msa0700100:intron | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | + | chr4_4:70984276-70984295 | Msa0700100:intron | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | - | chr4_4:70984326-70984345 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | + | chr4_4:70984328-70984347 | Msa0700100:intron | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | - | chr4_4:70984475-70984494 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | + | chr4_4:70984477-70984496 | Msa0700100:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | + | chr4_4:70984565-70984584 | Msa0700100:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | + | chr4_4:70984566-70984585 | Msa0700100:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | + | chr4_4:70984572-70984591 | Msa0700100:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | + | chr4_4:70984775-70984794 | Msa0700100:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | - | chr4_4:70984850-70984869 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | - | chr4_4:70984883-70984902 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | - | chr4_4:70984898-70984917 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | + | chr4_4:70984901-70984920 | Msa0700100:CDS | 35.0% | |
| TCCAGTCAATTTATGTGTAG+AGG | - | chr4_4:70985130-70985149 | None:intergenic | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | + | chr4_4:70985192-70985211 | Msa0700100:CDS | 35.0% | |
| !!! | AAGAACTTTTTCGCTGATTC+CGG | - | chr4_4:70984010-70984029 | None:intergenic | 35.0% |
| CACATTTACTCTCTTGTATG+CGG | + | chr4_4:70984074-70984093 | Msa0700100:intron | 35.0% | |
| !! | AGTTGTGCTTATAGGTTGAT+TGG | + | chr4_4:70984243-70984262 | Msa0700100:intron | 35.0% |
| ! | GGTTGATTGGTTATTCAAAC+AGG | + | chr4_4:70984256-70984275 | Msa0700100:intron | 35.0% |
| ! | AGGGCGTAACTAATTTTGAA+TGG | + | chr4_4:70984276-70984295 | Msa0700100:intron | 35.0% |
| GAATCTAATCAAGCTAGAGT+TGG | - | chr4_4:70984326-70984345 | None:intergenic | 35.0% | |
| ! | TCTAGCTTGATTAGATTCAG+TGG | + | chr4_4:70984328-70984347 | Msa0700100:intron | 35.0% |
| GAAGCAAATGCTGTAAATGA+TGG | - | chr4_4:70984475-70984494 | None:intergenic | 35.0% | |
| ATTTACAGCATTTGCTTCAC+CGG | + | chr4_4:70984477-70984496 | Msa0700100:CDS | 35.0% | |
| AGCACATTTAGTACTGCATT+AGG | + | chr4_4:70984565-70984584 | Msa0700100:CDS | 35.0% | |
| GCACATTTAGTACTGCATTA+GGG | + | chr4_4:70984566-70984585 | Msa0700100:CDS | 35.0% | |
| ! | TTAGTACTGCATTAGGGTTT+TGG | + | chr4_4:70984572-70984591 | Msa0700100:CDS | 35.0% |
| ! | AAACAGTCTTATGATTGGCT+TGG | + | chr4_4:70984775-70984794 | Msa0700100:CDS | 35.0% |
| TCAGGCTTACCCTTATTATA+AGG | - | chr4_4:70984850-70984869 | None:intergenic | 35.0% | |
| ! | TAGAATGGCATAGTTTTCCA+TGG | - | chr4_4:70984883-70984902 | None:intergenic | 35.0% |
| ACTTGAGGCATGTAATAGAA+TGG | - | chr4_4:70984898-70984917 | None:intergenic | 35.0% | |
| TATTACATGCCTCAAGTTCA+GGG | + | chr4_4:70984901-70984920 | Msa0700100:CDS | 35.0% | |
| TCCAGTCAATTTATGTGTAG+AGG | - | chr4_4:70985130-70985149 | None:intergenic | 35.0% | |
| CTATTATGCAGAGAAATTGC+AGG | + | chr4_4:70985192-70985211 | Msa0700100:CDS | 35.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | - | chr4_4:70983935-70983954 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | + | chr4_4:70984012-70984031 | Msa0700100:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | + | chr4_4:70984097-70984116 | Msa0700100:intron | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | + | chr4_4:70984098-70984117 | Msa0700100:intron | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | - | chr4_4:70984373-70984392 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | + | chr4_4:70984370-70984389 | Msa0700100:CDS | 40.0% | |
| TGGTGAGGTAGTAGTACATA+TGG | - | chr4_4:70984419-70984438 | None:intergenic | 40.0% | |
| !! | AGTTGTTGATGATGTTGGTG+AGG | - | chr4_4:70984434-70984453 | None:intergenic | 40.0% |
| GCAAATGCTGTAAATGATGG+AGG | - | chr4_4:70984472-70984491 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | + | chr4_4:70984577-70984596 | Msa0700100:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | + | chr4_4:70984723-70984742 | Msa0700100:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | + | chr4_4:70984813-70984832 | Msa0700100:CDS | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | + | chr4_4:70984900-70984919 | Msa0700100:CDS | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | + | chr4_4:70984918-70984937 | Msa0700100:CDS | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | + | chr4_4:70984958-70984977 | Msa0700100:CDS | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | + | chr4_4:70985031-70985050 | Msa0700100:CDS | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | + | chr4_4:70985035-70985054 | Msa0700100:CDS | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | + | chr4_4:70985073-70985092 | Msa0700100:CDS | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | + | chr4_4:70985086-70985105 | Msa0700100:CDS | 40.0% | |
| GTCAATTTATGTGTAGAGGC+AGG | - | chr4_4:70985126-70985145 | None:intergenic | 40.0% | |
| GCCTCTACACATAAATTGAC+TGG | + | chr4_4:70985126-70985145 | Msa0700100:CDS | 40.0% | |
| CTCCAATCAAATAGCGAAGA+TGG | - | chr4_4:70983935-70983954 | None:intergenic | 40.0% | |
| ATCAGCGAAAAAGTTCTTCC+AGG | + | chr4_4:70984012-70984031 | Msa0700100:CDS | 40.0% | |
| ! | CTGAGAGGGAGTTTTTGATA+GGG | + | chr4_4:70984097-70984116 | Msa0700100:intron | 40.0% |
| ! | TGAGAGGGAGTTTTTGATAG+GGG | + | chr4_4:70984098-70984117 | Msa0700100:intron | 40.0% |
| CCATATGGCTTAATTCTGCT+AGG | - | chr4_4:70984373-70984392 | None:intergenic | 40.0% | |
| CCTAGCAGAATTAAGCCATA+TGG | + | chr4_4:70984370-70984389 | Msa0700100:CDS | 40.0% | |
| TGGTGAGGTAGTAGTACATA+TGG | - | chr4_4:70984419-70984438 | None:intergenic | 40.0% | |
| !! | AGTTGTTGATGATGTTGGTG+AGG | - | chr4_4:70984434-70984453 | None:intergenic | 40.0% |
| GCAAATGCTGTAAATGATGG+AGG | - | chr4_4:70984472-70984491 | None:intergenic | 40.0% | |
| !!! | ACTGCATTAGGGTTTTGGAA+AGG | + | chr4_4:70984577-70984596 | Msa0700100:CDS | 40.0% |
| TACAAAAATTACTGGGAGGG+AGG | + | chr4_4:70984723-70984742 | Msa0700100:CDS | 40.0% | |
| ! | TGTTCTTGGTACCGGAATAT+TGG | + | chr4_4:70984813-70984832 | Msa0700100:CDS | 40.0% |
| CTATTACATGCCTCAAGTTC+AGG | + | chr4_4:70984900-70984919 | Msa0700100:CDS | 40.0% | |
| TCAGGGTCAAATGGAGATTA+TGG | + | chr4_4:70984918-70984937 | Msa0700100:CDS | 40.0% | |
| TTGTATTGTTGGACGCCAAA+TGG | + | chr4_4:70984958-70984977 | Msa0700100:CDS | 40.0% | |
| ! | ATGGGATTCTCAGAGAGTTT+TGG | + | chr4_4:70985031-70985050 | Msa0700100:CDS | 40.0% |
| !! | GATTCTCAGAGAGTTTTGGT+GGG | + | chr4_4:70985035-70985054 | Msa0700100:CDS | 40.0% |
| !! | CAAGGGAAGCTTTGTTGTTA+GGG | + | chr4_4:70985073-70985092 | Msa0700100:CDS | 40.0% |
| GTTGTTAGGGTCTAAAGATC+AGG | + | chr4_4:70985086-70985105 | Msa0700100:CDS | 40.0% | |
| GTCAATTTATGTGTAGAGGC+AGG | - | chr4_4:70985126-70985145 | None:intergenic | 40.0% | |
| GCCTCTACACATAAATTGAC+TGG | + | chr4_4:70985126-70985145 | Msa0700100:CDS | 40.0% | |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | - | chr4_4:70983963-70983982 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | - | chr4_4:70984007-70984026 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | + | chr4_4:70984096-70984115 | Msa0700100:intron | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | - | chr4_4:70984517-70984536 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | + | chr4_4:70984528-70984547 | Msa0700100:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | + | chr4_4:70984580-70984599 | Msa0700100:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | + | chr4_4:70984681-70984700 | Msa0700100:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | + | chr4_4:70984853-70984872 | Msa0700100:CDS | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | - | chr4_4:70984913-70984932 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | + | chr4_4:70985034-70985053 | Msa0700100:CDS | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | + | chr4_4:70985050-70985069 | Msa0700100:CDS | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | - | chr4_4:70985072-70985091 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | + | chr4_4:70985072-70985091 | Msa0700100:CDS | 45.0% |
| !! | GTTTTCCGGCAGGTTGAAAT+CGG | - | chr4_4:70983963-70983982 | None:intergenic | 45.0% |
| !!! | AACTTTTTCGCTGATTCCGG+CGG | - | chr4_4:70984007-70984026 | None:intergenic | 45.0% |
| ! | GCTGAGAGGGAGTTTTTGAT+AGG | + | chr4_4:70984096-70984115 | Msa0700100:intron | 45.0% |
| AACCATTCTTCCGAACGTTG+CGG | - | chr4_4:70984517-70984536 | None:intergenic | 45.0% | |
| AGAATGGTTCGCTCTTCGTA+AGG | + | chr4_4:70984528-70984547 | Msa0700100:CDS | 45.0% | |
| !!! | GCATTAGGGTTTTGGAAAGG+TGG | + | chr4_4:70984580-70984599 | Msa0700100:CDS | 45.0% |
| !! | GAATTGGGGAGTGCTTAATG+AGG | + | chr4_4:70984681-70984700 | Msa0700100:CDS | 45.0% |
| AATAAGGGTAAGCCTGAGAC+AGG | + | chr4_4:70984853-70984872 | Msa0700100:CDS | 45.0% | |
| TCCATTTGACCCTGAACTTG+AGG | - | chr4_4:70984913-70984932 | None:intergenic | 45.0% | |
| !! | GGATTCTCAGAGAGTTTTGG+TGG | + | chr4_4:70985034-70985053 | Msa0700100:CDS | 45.0% |
| TTGGTGGGAAAACGTGATTC+CGG | + | chr4_4:70985050-70985069 | Msa0700100:CDS | 45.0% | |
| AACAACAAAGCTTCCCTTGC+CGG | - | chr4_4:70985072-70985091 | None:intergenic | 45.0% | |
| !! | GCAAGGGAAGCTTTGTTGTT+AGG | + | chr4_4:70985072-70985091 | Msa0700100:CDS | 45.0% |
| TCTCTTGTATGCGGCTGAGA+GGG | + | chr4_4:70984083-70984102 | Msa0700100:intron | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | + | chr4_4:70984120-70984139 | Msa0700100:intron | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | + | chr4_4:70984129-70984148 | Msa0700100:intron | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | + | chr4_4:70984136-70984155 | Msa0700100:intron | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | + | chr4_4:70984156-70984175 | Msa0700100:intron | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | + | chr4_4:70984512-70984531 | Msa0700100:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | + | chr4_4:70984684-70984703 | Msa0700100:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | - | chr4_4:70984868-70984887 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | + | chr4_4:70984909-70984928 | Msa0700100:CDS | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | + | chr4_4:70985056-70985075 | Msa0700100:CDS | 50.0% | |
| TCTCTTGTATGCGGCTGAGA+GGG | + | chr4_4:70984083-70984102 | Msa0700100:intron | 50.0% | |
| !! | GATGCCTGCGTGTGCTATTT+AGG | + | chr4_4:70984120-70984139 | Msa0700100:intron | 50.0% |
| !! | GTGTGCTATTTAGGTGCCAG+TGG | + | chr4_4:70984129-70984148 | Msa0700100:intron | 50.0% |
| ATTTAGGTGCCAGTGGTGTG+CGG | + | chr4_4:70984136-70984155 | Msa0700100:intron | 50.0% | |
| CGGTTCCCTGCAATCAGTTA+TGG | + | chr4_4:70984156-70984175 | Msa0700100:intron | 50.0% | |
| TTCCGCAACGTTCGGAAGAA+TGG | + | chr4_4:70984512-70984531 | Msa0700100:CDS | 50.0% | |
| !! | TTGGGGAGTGCTTAATGAGG+CGG | + | chr4_4:70984684-70984703 | Msa0700100:CDS | 50.0% |
| TTCCATGGCAAACCTGTCTC+AGG | - | chr4_4:70984868-70984887 | None:intergenic | 50.0% | |
| GCCTCAAGTTCAGGGTCAAA+TGG | + | chr4_4:70984909-70984928 | Msa0700100:CDS | 50.0% | |
| GGAAAACGTGATTCCGGCAA+GGG | + | chr4_4:70985056-70985075 | Msa0700100:CDS | 50.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | + | chr4_4:70983955-70983974 | Msa0700100:CDS | 55.0% |
| AACCTGCCGGAAAACGCGAA+CGG | + | chr4_4:70983968-70983987 | Msa0700100:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | + | chr4_4:70984082-70984101 | Msa0700100:intron | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | - | chr4_4:70984127-70984146 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | + | chr4_4:70984483-70984502 | Msa0700100:CDS | 55.0% | |
| GAACGTTGCGGAACATCAGC+CGG | - | chr4_4:70984505-70984524 | None:intergenic | 55.0% | |
| GGCTGATGTTCCGCAACGTT+CGG | + | chr4_4:70984504-70984523 | Msa0700100:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | + | chr4_4:70984805-70984824 | Msa0700100:CDS | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | + | chr4_4:70984863-70984882 | Msa0700100:CDS | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | + | chr4_4:70985055-70985074 | Msa0700100:CDS | 55.0% | |
| !! | ACGCACCGATTTCAACCTGC+CGG | + | chr4_4:70983955-70983974 | Msa0700100:CDS | 55.0% |
| AACCTGCCGGAAAACGCGAA+CGG | + | chr4_4:70983968-70983987 | Msa0700100:CDS | 55.0% | |
| CTCTCTTGTATGCGGCTGAG+AGG | + | chr4_4:70984082-70984101 | Msa0700100:intron | 55.0% | |
| GGCACCTAAATAGCACACGC+AGG | - | chr4_4:70984127-70984146 | None:intergenic | 55.0% | |
| AGCATTTGCTTCACCGGCAC+CGG | + | chr4_4:70984483-70984502 | Msa0700100:CDS | 55.0% | |
| GAACGTTGCGGAACATCAGC+CGG | - | chr4_4:70984505-70984524 | None:intergenic | 55.0% | |
| GGCTGATGTTCCGCAACGTT+CGG | + | chr4_4:70984504-70984523 | Msa0700100:CDS | 55.0% | |
| CCTGACGGTGTTCTTGGTAC+CGG | + | chr4_4:70984805-70984824 | Msa0700100:CDS | 55.0% | |
| AGCCTGAGACAGGTTTGCCA+TGG | + | chr4_4:70984863-70984882 | Msa0700100:CDS | 55.0% | |
| GGGAAAACGTGATTCCGGCA+AGG | + | chr4_4:70985055-70985074 | Msa0700100:CDS | 55.0% | |
| ! | CCAGCTCCGTTCGCGTTTTC+CGG | - | chr4_4:70983977-70983996 | None:intergenic | 60.0% |
| GTGGTCGTCGTGCTGAGTTG+TGG | + | chr4_4:70984599-70984618 | Msa0700100:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | + | chr4_4:70984735-70984754 | Msa0700100:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | + | chr4_4:70984736-70984755 | Msa0700100:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | - | chr4_4:70984808-70984827 | None:intergenic | 60.0% | |
| ! | CCAGCTCCGTTCGCGTTTTC+CGG | - | chr4_4:70983977-70983996 | None:intergenic | 60.0% |
| GTGGTCGTCGTGCTGAGTTG+TGG | + | chr4_4:70984599-70984618 | Msa0700100:CDS | 60.0% | |
| TGGGAGGGAGGTGACTTCGA+TGG | + | chr4_4:70984735-70984754 | Msa0700100:CDS | 60.0% | |
| GGGAGGGAGGTGACTTCGAT+GGG | + | chr4_4:70984736-70984755 | Msa0700100:CDS | 60.0% | |
| CCGGTACCAAGAACACCGTC+AGG | - | chr4_4:70984808-70984827 | None:intergenic | 60.0% | |
| ! | CTCCGTTCGCGTTTTCCGGC+AGG | - | chr4_4:70983973-70983992 | None:intergenic | 65.0% |
| CCGGAAAACGCGAACGGAGC+TGG | + | chr4_4:70983974-70983993 | Msa0700100:CDS | 65.0% | |
| ! | CGGAGCTGGTTCTCTTCCGC+CGG | + | chr4_4:70983988-70984007 | Msa0700100:CDS | 65.0% |
| TGCAGGGAACCGCACACCAC+TGG | - | chr4_4:70984148-70984167 | None:intergenic | 65.0% | |
| TGCGGAACATCAGCCGGTGC+CGG | - | chr4_4:70984499-70984518 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | + | chr4_4:70984799-70984818 | Msa0700100:CDS | 65.0% | |
| ! | CTCCGTTCGCGTTTTCCGGC+AGG | - | chr4_4:70983973-70983992 | None:intergenic | 65.0% |
| CCGGAAAACGCGAACGGAGC+TGG | + | chr4_4:70983974-70983993 | Msa0700100:CDS | 65.0% | |
| ! | CGGAGCTGGTTCTCTTCCGC+CGG | + | chr4_4:70983988-70984007 | Msa0700100:CDS | 65.0% |
| TGCAGGGAACCGCACACCAC+TGG | - | chr4_4:70984148-70984167 | None:intergenic | 65.0% | |
| TGCGGAACATCAGCCGGTGC+CGG | - | chr4_4:70984499-70984518 | None:intergenic | 65.0% | |
| GCGTCGCCTGACGGTGTTCT+TGG | + | chr4_4:70984799-70984818 | Msa0700100:CDS | 65.0% | |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | + | chr4_4:70984790-70984809 | Msa0700100:CDS | 70.0% |
| ! | TGGCTTGGCGCGTCGCCTGA+CGG | + | chr4_4:70984790-70984809 | Msa0700100:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 70983932 | 70985236 | 70983932 | ID=Msa0700100;Name=Msa0700100 |
| chr4_4 | mRNA | 70983932 | 70985236 | 70983932 | ID=Msa0700100-mRNA-1;Parent=Msa0700100;Name=Msa0700100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|325 |
| chr4_4 | exon | 70983932 | 70984033 | 70983932 | ID=Msa0700100-mRNA-1:exon:21521;Parent=Msa0700100-mRNA-1 |
| chr4_4 | exon | 70984361 | 70985236 | 70984361 | ID=Msa0700100-mRNA-1:exon:21522;Parent=Msa0700100-mRNA-1 |
| chr4_4 | CDS | 70983932 | 70984033 | 70983932 | ID=Msa0700100-mRNA-1:cds;Parent=Msa0700100-mRNA-1 |
| chr4_4 | CDS | 70984361 | 70985236 | 70984361 | ID=Msa0700100-mRNA-1:cds;Parent=Msa0700100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
