Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618120 | XP_013446647.1 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618120 | sp|Q700D9|MYBF_ARATH | 55.435 | 92 | 32 | 1 | 89 | 180 | 3 | 85 | 5.10e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618120 | A0A072TT31 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0618120 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618120 | Msa0701160 | 0.986973 | 1.297939e-168 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618120 | MtrunA17_Chr8g0379121 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Msa0618120 | MtrunA17_Chr2g0283951 | 47.838 | 370 | 111 | 11 | 89 | 436 | 69 | 378 | 4.99e-90 | 278 |
| Msa0618120 | MtrunA17_Chr2g0320231 | 40.850 | 306 | 121 | 13 | 11 | 311 | 12 | 262 | 3.87e-41 | 150 |
| Msa0618120 | MtrunA17_Chr7g0243081 | 53.125 | 128 | 48 | 2 | 56 | 183 | 21 | 136 | 1.43e-35 | 134 |
| Msa0618120 | MtrunA17_Chr2g0288601 | 77.966 | 59 | 13 | 0 | 101 | 159 | 63 | 121 | 9.92e-28 | 107 |
| Msa0618120 | MtrunA17_Chr1g0162931 | 60.714 | 84 | 24 | 1 | 97 | 180 | 6 | 80 | 5.20e-27 | 109 |
| Msa0618120 | MtrunA17_Chr1g0210911 | 56.044 | 91 | 26 | 2 | 84 | 174 | 2 | 78 | 1.30e-25 | 106 |
| Msa0618120 | MtrunA17_Chr3g0095611 | 49.462 | 93 | 33 | 3 | 94 | 185 | 4 | 83 | 6.46e-22 | 93.6 |
| Msa0618120 | MtrunA17_Chr1g0154261 | 55.172 | 87 | 27 | 3 | 94 | 179 | 113 | 188 | 8.17e-20 | 89.4 |
| Msa0618120 | MtrunA17_Chr6g0479431 | 50.588 | 85 | 19 | 2 | 104 | 174 | 183 | 258 | 2.70e-17 | 83.2 |
| Msa0618120 | MtrunA17_Chr7g0261911 | 70.000 | 50 | 15 | 0 | 110 | 159 | 263 | 312 | 5.45e-17 | 83.2 |
| Msa0618120 | MtrunA17_Chr5g0410741 | 56.164 | 73 | 22 | 2 | 108 | 179 | 218 | 281 | 1.39e-16 | 81.3 |
| Msa0618120 | MtrunA17_Chr8g0366281 | 55.882 | 68 | 21 | 1 | 108 | 175 | 172 | 230 | 1.47e-16 | 80.9 |
| Msa0618120 | MtrunA17_Chr1g0190301 | 68.000 | 50 | 16 | 0 | 110 | 159 | 176 | 225 | 2.00e-16 | 80.5 |
| Msa0618120 | MtrunA17_Chr7g0274471 | 68.000 | 50 | 16 | 0 | 110 | 159 | 219 | 268 | 2.08e-16 | 80.9 |
| Msa0618120 | MtrunA17_Chr3g0109981 | 58.209 | 67 | 19 | 1 | 108 | 174 | 273 | 330 | 2.53e-16 | 80.9 |
| Msa0618120 | MtrunA17_Chr6g0461641 | 62.000 | 50 | 19 | 0 | 110 | 159 | 43 | 92 | 4.26e-15 | 76.6 |
| Msa0618120 | MtrunA17_Chr5g0409731 | 50.725 | 69 | 27 | 1 | 98 | 159 | 7 | 75 | 7.17e-15 | 75.1 |
| Msa0618120 | MtrunA17_Chr7g0258551 | 58.182 | 55 | 23 | 0 | 105 | 159 | 208 | 262 | 1.44e-14 | 75.1 |
| Msa0618120 | MtrunA17_Chr2g0321461 | 60.000 | 50 | 20 | 0 | 110 | 159 | 46 | 95 | 1.91e-14 | 74.7 |
| Msa0618120 | MtrunA17_Chr7g0254981 | 65.306 | 49 | 17 | 0 | 111 | 159 | 52 | 100 | 4.27e-14 | 72.4 |
| Msa0618120 | MtrunA17_Chr1g0175091 | 63.265 | 49 | 18 | 0 | 111 | 159 | 260 | 308 | 4.73e-14 | 73.6 |
| Msa0618120 | MtrunA17_Chr1g0175081 | 57.143 | 49 | 21 | 0 | 111 | 159 | 24 | 72 | 8.09e-14 | 67.4 |
| Msa0618120 | MtrunA17_Chr1g0197171 | 60.000 | 50 | 20 | 0 | 110 | 159 | 45 | 94 | 8.94e-14 | 71.6 |
| Msa0618120 | MtrunA17_Chr2g0290991 | 60.000 | 50 | 20 | 0 | 110 | 159 | 40 | 89 | 1.10e-13 | 71.6 |
| Msa0618120 | MtrunA17_Chr2g0291021 | 65.306 | 49 | 17 | 0 | 111 | 159 | 51 | 99 | 1.82e-13 | 71.2 |
| Msa0618120 | MtrunA17_Chr5g0417521 | 52.000 | 50 | 24 | 0 | 110 | 159 | 16 | 65 | 2.27e-13 | 71.2 |
| Msa0618120 | MtrunA17_Chr8g0356501 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 2.99e-13 | 70.9 |
| Msa0618120 | MtrunA17_Chr2g0310011 | 56.000 | 50 | 22 | 0 | 110 | 159 | 36 | 85 | 6.38e-13 | 69.7 |
| Msa0618120 | MtrunA17_Chr4g0042451 | 52.000 | 50 | 24 | 0 | 110 | 159 | 18 | 67 | 6.29e-12 | 66.6 |
| Msa0618120 | MtrunA17_Chr7g0258531 | 39.604 | 101 | 57 | 1 | 63 | 159 | 163 | 263 | 1.24e-11 | 65.9 |
| Msa0618120 | MtrunA17_Chr1g0175071 | 57.143 | 49 | 21 | 0 | 111 | 159 | 179 | 227 | 1.45e-11 | 65.5 |
| Msa0618120 | MtrunA17_Chr7g0242521 | 59.615 | 52 | 18 | 1 | 111 | 159 | 15 | 66 | 4.66e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618120 | AT2G38300.1 | 66.667 | 87 | 20 | 1 | 97 | 183 | 42 | 119 | 1.05e-31 | 124 |
| Msa0618120 | AT2G42660.1 | 70.513 | 78 | 14 | 1 | 99 | 176 | 40 | 108 | 2.24e-29 | 115 |
| Msa0618120 | AT2G40260.1 | 62.500 | 104 | 25 | 3 | 79 | 177 | 47 | 141 | 1.61e-28 | 116 |
| Msa0618120 | AT4G04605.1 | 57.292 | 96 | 32 | 1 | 101 | 196 | 6 | 92 | 2.73e-28 | 111 |
| Msa0618120 | AT2G02060.2 | 64.103 | 78 | 28 | 0 | 82 | 159 | 2 | 79 | 2.11e-26 | 107 |
| Msa0618120 | AT2G02060.1 | 64.103 | 78 | 28 | 0 | 82 | 159 | 2 | 79 | 2.11e-26 | 107 |
| Msa0618120 | AT1G14600.1 | 55.435 | 92 | 32 | 1 | 89 | 180 | 3 | 85 | 5.18e-26 | 106 |
| Msa0618120 | AT4G04580.1 | 52.564 | 78 | 28 | 1 | 101 | 178 | 6 | 74 | 6.84e-19 | 84.0 |
| Msa0618120 | AT5G42630.2 | 51.087 | 92 | 30 | 3 | 88 | 179 | 90 | 166 | 1.32e-18 | 84.7 |
| Msa0618120 | AT5G42630.1 | 51.087 | 92 | 30 | 3 | 88 | 179 | 90 | 166 | 2.09e-18 | 85.5 |
| Msa0618120 | AT4G04555.1 | 52.564 | 78 | 28 | 1 | 101 | 178 | 6 | 74 | 3.24e-18 | 80.1 |
| Msa0618120 | AT1G32240.2 | 58.209 | 67 | 19 | 1 | 108 | 174 | 212 | 269 | 1.83e-16 | 80.9 |
| Msa0618120 | AT1G32240.1 | 58.209 | 67 | 19 | 1 | 108 | 174 | 212 | 269 | 2.19e-16 | 80.9 |
| Msa0618120 | AT5G16560.1 | 58.209 | 67 | 19 | 1 | 108 | 174 | 218 | 275 | 2.57e-16 | 80.9 |
| Msa0618120 | AT4G17695.1 | 55.714 | 70 | 22 | 1 | 108 | 177 | 163 | 223 | 3.30e-16 | 79.7 |
| Msa0618120 | AT5G45580.2 | 55.738 | 61 | 27 | 0 | 99 | 159 | 13 | 73 | 1.22e-15 | 77.4 |
| Msa0618120 | AT4G28610.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 227 | 275 | 2.62e-15 | 77.8 |
| Msa0618120 | AT5G45580.1 | 58.182 | 55 | 23 | 0 | 105 | 159 | 3 | 57 | 3.76e-15 | 75.9 |
| Msa0618120 | AT3G04450.3 | 63.265 | 49 | 18 | 0 | 111 | 159 | 240 | 288 | 4.47e-15 | 76.3 |
| Msa0618120 | AT5G29000.4 | 59.677 | 62 | 24 | 1 | 98 | 159 | 221 | 281 | 4.55e-15 | 76.3 |
| Msa0618120 | AT5G29000.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 190 | 238 | 5.36e-15 | 76.6 |
| Msa0618120 | AT5G29000.3 | 67.347 | 49 | 16 | 0 | 111 | 159 | 190 | 238 | 5.36e-15 | 76.6 |
| Msa0618120 | AT3G04450.4 | 63.265 | 49 | 18 | 0 | 111 | 159 | 200 | 248 | 5.56e-15 | 76.6 |
| Msa0618120 | AT3G04450.2 | 63.265 | 49 | 18 | 0 | 111 | 159 | 200 | 248 | 5.56e-15 | 76.6 |
| Msa0618120 | AT5G29000.2 | 61.818 | 55 | 21 | 0 | 105 | 159 | 227 | 281 | 5.93e-15 | 76.6 |
| Msa0618120 | AT3G04450.1 | 63.265 | 49 | 18 | 0 | 111 | 159 | 240 | 288 | 6.19e-15 | 77.0 |
| Msa0618120 | AT3G13040.3 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0618120 | AT3G13040.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0618120 | AT3G13040.2 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0618120 | AT3G04030.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 4.40e-14 | 73.9 |
| Msa0618120 | AT3G04030.3 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 5.20e-14 | 73.9 |
| Msa0618120 | AT3G12730.1 | 58.000 | 50 | 21 | 0 | 110 | 159 | 24 | 73 | 6.90e-14 | 71.2 |
| Msa0618120 | AT5G18240.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 8.56e-14 | 73.2 |
| Msa0618120 | AT5G18240.3 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 8.56e-14 | 73.2 |
| Msa0618120 | AT5G18240.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.65e-14 | 73.2 |
| Msa0618120 | AT5G18240.4 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.65e-14 | 73.2 |
| Msa0618120 | AT5G18240.5 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.73e-14 | 73.2 |
| Msa0618120 | AT2G01060.1 | 65.306 | 49 | 17 | 0 | 111 | 159 | 17 | 65 | 1.21e-13 | 71.6 |
| Msa0618120 | AT4G13640.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 3.21e-13 | 70.5 |
| Msa0618120 | AT3G24120.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 42 | 91 | 3.24e-13 | 70.5 |
| Msa0618120 | AT4G13640.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 3.32e-13 | 70.5 |
| Msa0618120 | AT3G24120.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 42 | 91 | 3.40e-13 | 70.5 |
| Msa0618120 | AT2G06020.1 | 39.773 | 88 | 53 | 0 | 72 | 159 | 49 | 136 | 4.54e-13 | 70.1 |
| Msa0618120 | AT1G69580.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 5.83e-13 | 70.1 |
| Msa0618120 | AT1G79430.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 6.06e-13 | 70.1 |
| Msa0618120 | AT1G69580.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 6.09e-13 | 70.1 |
| Msa0618120 | AT5G06800.3 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 8.90e-13 | 68.9 |
| Msa0618120 | AT2G20400.1 | 48.101 | 79 | 32 | 1 | 111 | 189 | 233 | 302 | 1.30e-12 | 69.7 |
| Msa0618120 | AT2G20400.2 | 63.265 | 49 | 18 | 0 | 111 | 159 | 233 | 281 | 1.56e-12 | 69.3 |
| Msa0618120 | AT5G06800.1 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 2.66e-12 | 68.6 |
| Msa0618120 | AT5G06800.2 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 2.76e-12 | 68.6 |
| Msa0618120 | AT3G04030.2 | 54.000 | 50 | 22 | 1 | 110 | 159 | 46 | 94 | 1.17e-11 | 66.6 |
Find 99 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTCCTTGTGTATTTA+TGG | 0.141395 | 4_2:-68987109 | None:intergenic |
| CATCAGTTGAAGCACCAATT+TGG | 0.203737 | 4_2:-68985240 | None:intergenic |
| GATGATTTAAGTACCATTCT+TGG | 0.272460 | 4_2:-68987035 | None:intergenic |
| TTTGGTTTGGAGTGTGTTAT+TGG | 0.285452 | 4_2:-68983269 | None:intergenic |
| CTTAAACTCAGTTGCAAATC+AGG | 0.297702 | 4_2:-68987732 | None:intergenic |
| ATGATTGTTCATGATATCTA+AGG | 0.331312 | 4_2:-68987235 | None:intergenic |
| ATCAGTTGAAGCACCAATTT+GGG | 0.338016 | 4_2:-68985239 | None:intergenic |
| TATAGTTTACCTTGAATTGA+TGG | 0.341831 | 4_2:-68986935 | None:intergenic |
| GAACCAGCAGCTTCAAGTTA+AGG | 0.347972 | 4_2:+68987143 | Msa0618120:CDS |
| GAGTTTCGTGTCGATTTCTT+TGG | 0.349363 | 4_2:-68987802 | None:intergenic |
| GTAAACTTGATAGGTAGTTT+TGG | 0.349834 | 4_2:-68983287 | None:intergenic |
| TGTGTATTTATGGCTGTTGA+TGG | 0.356390 | 4_2:-68987099 | None:intergenic |
| TGCAGGAGCAACACCCAAAT+TGG | 0.368712 | 4_2:+68985226 | Msa0618120:intron |
| CACAGATCAACCCATGAATT+AGG | 0.371135 | 4_2:+68986748 | Msa0618120:CDS |
| TCATGAACAATCATCCATAT+TGG | 0.374740 | 4_2:+68987244 | Msa0618120:CDS |
| AAGCTGCTGGTTCAAAGTTA+TGG | 0.381198 | 4_2:-68987133 | None:intergenic |
| CATGAGAATGAGAGGAGTAC+TGG | 0.386029 | 4_2:+68984723 | Msa0618120:CDS |
| AGAAATTGGCTTGGTCTCAT+AGG | 0.398094 | 4_2:-68987192 | None:intergenic |
| GGTACTTAAATCATCAATCT+TGG | 0.408196 | 4_2:+68987043 | Msa0618120:CDS |
| TCATGTCAAGAGTCACTTGC+AGG | 0.410009 | 4_2:+68985286 | Msa0618120:CDS |
| GAAGGAAATGTAAACTTGAT+AGG | 0.411065 | 4_2:-68983296 | None:intergenic |
| GTGATAAGGATGAGGGATGC+AGG | 0.412034 | 4_2:-68986891 | None:intergenic |
| ATGTTACCTTAATCCGAAAC+GGG | 0.413271 | 4_2:-68987428 | None:intergenic |
| TATATATATACTTACTCTCT+TGG | 0.424725 | 4_2:-68985088 | None:intergenic |
| TTCTCTTCAAGAAATTGGCT+TGG | 0.425569 | 4_2:-68987201 | None:intergenic |
| AGACCCGCTGAGGTGAGCTT+TGG | 0.428693 | 4_2:+68987321 | Msa0618120:CDS |
| GCAGGGTGATCCGTGTCCAC+CGG | 0.430658 | 4_2:+68985475 | Msa0618120:intron |
| TCAAATGAAAGAAGAAGAAA+TGG | 0.432967 | 4_2:+68984972 | Msa0618120:CDS |
| GAGAAATGGAACCTAATTCA+TGG | 0.443905 | 4_2:-68986759 | None:intergenic |
| AGCAAGAAACTTGACGAGGC+TGG | 0.448557 | 4_2:+68985978 | Msa0618120:CDS |
| TTTCCAAAGCTCACCTCAGC+GGG | 0.450601 | 4_2:-68987324 | None:intergenic |
| GGACACATCTTCATCTTGAA+TGG | 0.461249 | 4_2:+68983436 | Msa0618120:five_prime_UTR |
| CAGGGTGATCCGTGTCCACC+GGG | 0.468752 | 4_2:+68985476 | Msa0618120:intron |
| ATAAAAGAGTGATGAAGATC+AGG | 0.470459 | 4_2:-68985041 | None:intergenic |
| ATGGGCTACATGGTGAGAAA+TGG | 0.471248 | 4_2:-68986773 | None:intergenic |
| AATGTTACCTTAATCCGAAA+CGG | 0.472630 | 4_2:-68987429 | None:intergenic |
| CAACATTTCAAGATGGCAAA+TGG | 0.480821 | 4_2:+68986814 | Msa0618120:CDS |
| CCTCGTCAAGTTTCTTGCTC+CGG | 0.482077 | 4_2:-68985974 | None:intergenic |
| TATCCTTAACTTGAAGCTGC+TGG | 0.484791 | 4_2:-68987146 | None:intergenic |
| ATTCAAAGCCCATCAATTCA+AGG | 0.485522 | 4_2:+68986926 | Msa0618120:CDS |
| CCTCGATTATTTCTCTTCCA+AGG | 0.489008 | 4_2:-68983414 | None:intergenic |
| ATAGTTTACCTTGAATTGAT+GGG | 0.489818 | 4_2:-68986934 | None:intergenic |
| GATCAAAGATGCCTAGGCTT+AGG | 0.490445 | 4_2:+68985012 | Msa0618120:CDS |
| ATGCATGCTGTTGAAAGGCT+TGG | 0.493618 | 4_2:+68985062 | Msa0618120:CDS |
| AATTCATTGCTCATGTAGCT+TGG | 0.505208 | 4_2:-68987069 | None:intergenic |
| AATTTCTTGAAGAGAAAAGA+TGG | 0.506639 | 4_2:+68987208 | Msa0618120:CDS |
| TCATGGGTTGATCTGTGTGT+TGG | 0.507129 | 4_2:-68986742 | None:intergenic |
| ACATGCTGAGGACACTTCAA+TGG | 0.509382 | 4_2:+68984758 | Msa0618120:CDS |
| CAAAGATGCCTAGGCTTAGG+TGG | 0.512420 | 4_2:+68985015 | Msa0618120:CDS |
| CAAACAAACGGCAACAATGA+TGG | 0.520591 | 4_2:+68987756 | Msa0618120:CDS |
| AGCTTCTTCATTCAAATCAA+AGG | 0.526882 | 4_2:-68984805 | None:intergenic |
| ATGAGAATGAGAGGAGTACT+GGG | 0.527704 | 4_2:+68984724 | Msa0618120:CDS |
| TTGAACTATTAAAATAGTTG+TGG | 0.532058 | 4_2:-68987389 | None:intergenic |
| TTGGAAACAACACAAGAAGC+AGG | 0.535242 | 4_2:+68987340 | Msa0618120:CDS |
| ATGAGAAACATGAGAATGAG+AGG | 0.550261 | 4_2:+68984715 | Msa0618120:CDS |
| AACAATGATGGCAAGAGTGA+TGG | 0.553546 | 4_2:+68987768 | Msa0618120:CDS |
| ATGTTAGATCAAAGATGCCT+AGG | 0.555843 | 4_2:+68985006 | Msa0618120:CDS |
| ATGTGAATGTGATAAGGATG+AGG | 0.556397 | 4_2:-68986899 | None:intergenic |
| ATGTGAATGTGAATGTGATA+AGG | 0.557968 | 4_2:-68986905 | None:intergenic |
| TTAGTAAAGGATGATGATGA+AGG | 0.558622 | 4_2:+68984918 | Msa0618120:CDS |
| CATGCTGTTGAAAGGCTTGG+AGG | 0.559982 | 4_2:+68985065 | Msa0618120:CDS |
| GATGAGGTATCATGGACTGA+TGG | 0.560341 | 4_2:-68986792 | None:intergenic |
| GAAATGTTGATGAGGTATCA+TGG | 0.573003 | 4_2:-68986800 | None:intergenic |
| TGTGGAAATTATAACTGTGC+TGG | 0.573367 | 4_2:-68986864 | None:intergenic |
| ATTGCTGAAAGACAAACAAT+GGG | 0.582280 | 4_2:+68987707 | Msa0618120:CDS |
| CATTGCTGAAAGACAAACAA+TGG | 0.583238 | 4_2:+68987706 | Msa0618120:CDS |
| AGAAATGGAACCTAATTCAT+GGG | 0.583302 | 4_2:-68986758 | None:intergenic |
| TTGTTAATGAATATGTCAGA+TGG | 0.583874 | 4_2:+68984690 | Msa0618120:exon |
| GGGTGATCCGTGTCCACCGG+GGG | 0.584092 | 4_2:+68985478 | Msa0618120:intron |
| CTGAGTTTAAGTCAAACAAA+CGG | 0.584680 | 4_2:+68987744 | Msa0618120:CDS |
| TCATGGACTGATGGGCTACA+TGG | 0.586690 | 4_2:-68986783 | None:intergenic |
| TCAGGAGTCCACCTAAGCCT+AGG | 0.589432 | 4_2:-68985023 | None:intergenic |
| ACCTCATCAACATTTCAAGA+TGG | 0.592000 | 4_2:+68986807 | Msa0618120:CDS |
| ATGAGGGATGCAGGAGACTG+TGG | 0.594666 | 4_2:-68986882 | None:intergenic |
| CATTTCAAGATGGCAAATGG+TGG | 0.597539 | 4_2:+68986817 | Msa0618120:CDS |
| TGTGATCATGAATTAGTGAA+TGG | 0.597628 | 4_2:+68984873 | Msa0618120:CDS |
| TGTGAATGTGATAAGGATGA+GGG | 0.599304 | 4_2:-68986898 | None:intergenic |
| AACCTACAAACATTATCCCC+CGG | 0.605303 | 4_2:-68985494 | None:intergenic |
| AAACTTGACGAGGCTGGACA+AGG | 0.608837 | 4_2:+68985984 | Msa0618120:CDS |
| ATGAGGTATCATGGACTGAT+GGG | 0.611244 | 4_2:-68986791 | None:intergenic |
| TGATTGTTCATGATATCTAA+GGG | 0.612865 | 4_2:-68987234 | None:intergenic |
| TGGTCTCATAGGAGCAAGTG+TGG | 0.616525 | 4_2:-68987181 | None:intergenic |
| TGATGATGAGAAATTAGTAA+AGG | 0.628164 | 4_2:+68984905 | Msa0618120:CDS |
| GAAGAGTGAAGAACATGCTG+AGG | 0.635213 | 4_2:+68984746 | Msa0618120:CDS |
| GCCATCTTGAAATGTTGATG+AGG | 0.640047 | 4_2:-68986808 | None:intergenic |
| GTTTCCAAAGCTCACCTCAG+CGG | 0.640457 | 4_2:-68987325 | None:intergenic |
| CTTGGAAGAGAAATAATCGA+GGG | 0.648085 | 4_2:+68983415 | Msa0618120:five_prime_UTR |
| TGGAAACAACACAAGAAGCA+GGG | 0.655021 | 4_2:+68987341 | Msa0618120:CDS |
| CTTCAACTGATGAATGTGAG+AGG | 0.660411 | 4_2:+68985251 | Msa0618120:CDS |
| TGATCAAGATGTTAACAATG+AGG | 0.669481 | 4_2:+68984836 | Msa0618120:CDS |
| TGTTACCTTAATCCGAAACG+GGG | 0.678201 | 4_2:-68987427 | None:intergenic |
| CCTTGGAAGAGAAATAATCG+AGG | 0.681331 | 4_2:+68983414 | Msa0618120:five_prime_UTR |
| TAACAATGAGGAGAATGATG+AGG | 0.684647 | 4_2:+68984848 | Msa0618120:CDS |
| AACATCACTTAGACCCGCTG+AGG | 0.687013 | 4_2:+68987311 | Msa0618120:CDS |
| AGGGTGATCCGTGTCCACCG+GGG | 0.695098 | 4_2:+68985477 | Msa0618120:intron |
| TCAACAGCCATAAATACACA+AGG | 0.708092 | 4_2:+68987102 | Msa0618120:CDS |
| CCGGAGCAAGAAACTTGACG+AGG | 0.718472 | 4_2:+68985974 | Msa0618120:CDS |
| GTTACCTTAATCCGAAACGG+GGG | 0.718704 | 4_2:-68987426 | None:intergenic |
| TTGTTCATGATATCTAAGGG+AGG | 0.723510 | 4_2:-68987231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATTAAAATAAAA+GGG | + | chr4_2:68985410-68985429 | Msa0618120:intron | 0.0% |
| !! | TTCAAATTCTTTAAATATAT+AGG | + | chr4_2:68984211-68984230 | Msa0618120:intron | 10.0% |
| !!! | CTTTAAAACTTTTAAAATAT+AGG | - | chr4_2:68984530-68984549 | None:intergenic | 10.0% |
| !! | AAATATATTAAAATAAAAGG+GGG | + | chr4_2:68985412-68985431 | Msa0618120:intron | 10.0% |
| !!! | AGAATTTTTTTTTCATTATA+GGG | - | chr4_2:68986061-68986080 | None:intergenic | 10.0% |
| !!! | TAGAATTTTTTTTTCATTAT+AGG | - | chr4_2:68986062-68986081 | None:intergenic | 10.0% |
| !! | TAAGATAACAAATATTAGAT+GGG | - | chr4_2:68983639-68983658 | None:intergenic | 15.0% |
| !! | ATAAGATAACAAATATTAGA+TGG | - | chr4_2:68983640-68983659 | None:intergenic | 15.0% |
| !!! | CAATAAAGAAAAATTTTCTT+TGG | - | chr4_2:68983741-68983760 | None:intergenic | 15.0% |
| !! | GATATAAAGTTAGTAATTAA+AGG | + | chr4_2:68983914-68983933 | Msa0618120:intron | 15.0% |
| !! | TTAATAAGATTCATATTAGA+AGG | - | chr4_2:68984385-68984404 | None:intergenic | 15.0% |
| !! | AATTGTGAAATTGTTTAATT+TGG | + | chr4_2:68985154-68985173 | Msa0618120:intron | 15.0% |
| !! | AATATATTAAAATAAAAGGG+GGG | + | chr4_2:68985413-68985432 | Msa0618120:intron | 15.0% |
| !!! | TTTCCTTGATTTTTTTTTTT+TGG | + | chr4_2:68985843-68985862 | Msa0618120:intron | 15.0% |
| !!! | GTATTTCATAAATCATTTTA+TGG | + | chr4_2:68985926-68985945 | Msa0618120:intron | 15.0% |
| !! | ATATAACAGTGAAAAAAATA+TGG | - | chr4_2:68986330-68986349 | None:intergenic | 15.0% |
| !! | TCTAATTAAAAATTTGTACT+GGG | + | chr4_2:68986612-68986631 | Msa0618120:intron | 15.0% |
| !! | AATGTCAAAATAAACAAAAT+CGG | - | chr4_2:68986690-68986709 | None:intergenic | 15.0% |
| !!! | AAAGTTACATTTTTTTACTT+AGG | + | chr4_2:68987010-68987029 | Msa0618120:intron | 15.0% |
| !! | TGAGAAAATATATATATGAA+AGG | - | chr4_2:68987667-68987686 | None:intergenic | 15.0% |
| !!! | TTTTCATATTATTATTGACA+TGG | - | chr4_2:68987860-68987879 | None:intergenic | 15.0% |
| !! | TCAATATATATATATAGCCT+TGG | + | chr4_2:68983397-68983416 | Msa0618120:five_prime_UTR | 20.0% |
| !! | AATGAAATAATTAATGAGAG+AGG | - | chr4_2:68984425-68984444 | None:intergenic | 20.0% |
| !! | TATATATATACTTACTCTCT+TGG | - | chr4_2:68985091-68985110 | None:intergenic | 20.0% |
| !! | AACAATTTCACAATTATCTA+GGG | - | chr4_2:68985149-68985168 | None:intergenic | 20.0% |
| !! | AAACAATTTCACAATTATCT+AGG | - | chr4_2:68985150-68985169 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTCTCTCTAG+TGG | - | chr4_2:68985695-68985714 | None:intergenic | 20.0% |
| !! | ATGCAATAAATACAATAGAT+TGG | + | chr4_2:68985723-68985742 | Msa0618120:intron | 20.0% |
| !! | AATAAATACAATAGATTGGT+TGG | + | chr4_2:68985727-68985746 | Msa0618120:intron | 20.0% |
| !!! | ATAAATACAATAGATTGGTT+GGG | + | chr4_2:68985728-68985747 | Msa0618120:intron | 20.0% |
| !! | ATAGAAAAAATATGAAGTGT+TGG | + | chr4_2:68985771-68985790 | Msa0618120:intron | 20.0% |
| !! | TATATCAACACTTAATTTCA+AGG | - | chr4_2:68985905-68985924 | None:intergenic | 20.0% |
| !! | GATTTATAAGACAAAAAAAC+AGG | - | chr4_2:68986204-68986223 | None:intergenic | 20.0% |
| !! | CACTGTTATATAAAAACAAA+TGG | + | chr4_2:68986339-68986358 | Msa0618120:intron | 20.0% |
| !!! | GTCATCTATTTTAAAATTGA+TGG | + | chr4_2:68986493-68986512 | Msa0618120:intron | 20.0% |
| !! | TAGTAATTACATAAAAGAGT+AGG | + | chr4_2:68986589-68986608 | Msa0618120:intron | 20.0% |
| !! | GTCTAATTAAAAATTTGTAC+TGG | + | chr4_2:68986611-68986630 | Msa0618120:intron | 20.0% |
| !!! | AATCAAAGTATTACAATACA+AGG | + | chr4_2:68986642-68986661 | Msa0618120:intron | 20.0% |
| !!! | ATCAAAGTATTACAATACAA+GGG | + | chr4_2:68986643-68986662 | Msa0618120:intron | 20.0% |
| !!! | TTTATTTTTTTCCATTCAAG+TGG | + | chr4_2:68986983-68987002 | Msa0618120:intron | 20.0% |
| !!! | TGTAAATTTTTCTTCCAATA+TGG | - | chr4_2:68987261-68987280 | None:intergenic | 20.0% |
| !! | TTGAACTATTAAAATAGTTG+TGG | - | chr4_2:68987392-68987411 | None:intergenic | 20.0% |
| !! | TATATATGAAAGGTTAAGAA+AGG | - | chr4_2:68987657-68987676 | None:intergenic | 20.0% |
| ! | TGATCAAAATGAACACAAAA+GGG | - | chr4_2:68983563-68983582 | None:intergenic | 25.0% |
| ! | ATGATCAAAATGAACACAAA+AGG | - | chr4_2:68983564-68983583 | None:intergenic | 25.0% |
| ! | AAAATGAACACAAAAAGAAC+AGG | - | chr4_2:68983599-68983618 | None:intergenic | 25.0% |
| !! | TTTCTTTGGAAAAACAAGTT+AGG | - | chr4_2:68983727-68983746 | None:intergenic | 25.0% |
| ! | TCATATGATAAACCTGAATA+TGG | + | chr4_2:68984019-68984038 | Msa0618120:intron | 25.0% |
| !! | TTGCAATTTTATCCATATTC+AGG | - | chr4_2:68984034-68984053 | None:intergenic | 25.0% |
| ! | AAGTTTATTAATTAACACCC+TGG | + | chr4_2:68984079-68984098 | Msa0618120:intron | 25.0% |
| ! | TATGCAAATTAATGAAACCA+GGG | - | chr4_2:68984099-68984118 | None:intergenic | 25.0% |
| ! | ATATGCAAATTAATGAAACC+AGG | - | chr4_2:68984100-68984119 | None:intergenic | 25.0% |
| ! | AGAAAGGAATTAACTGTAAA+GGG | - | chr4_2:68984132-68984151 | None:intergenic | 25.0% |
| ! | TATTCAGCTACTTATTCATT+AGG | + | chr4_2:68984163-68984182 | Msa0618120:intron | 25.0% |
| ! | TTGTTAATGAATATGTCAGA+TGG | + | chr4_2:68984690-68984709 | Msa0618120:exon | 25.0% |
| !! | TGATGATGAGAAATTAGTAA+AGG | + | chr4_2:68984905-68984924 | Msa0618120:CDS | 25.0% |
| ! | TCAAATGAAAGAAGAAGAAA+TGG | + | chr4_2:68984972-68984991 | Msa0618120:CDS | 25.0% |
| ! | GTTGTGTTCATTATTAATGT+TGG | + | chr4_2:68985196-68985215 | Msa0618120:intron | 25.0% |
| ! | GGTATATAAGACAAAATTTG+AGG | + | chr4_2:68985307-68985326 | Msa0618120:intron | 25.0% |
| !! | AGATCAATTAATTTTTCTGC+AGG | + | chr4_2:68985457-68985476 | Msa0618120:intron | 25.0% |
| !! | GATCAATTAATTTTTCTGCA+GGG | + | chr4_2:68985458-68985477 | Msa0618120:intron | 25.0% |
| ! | AAATACCGAATGATTTATCT+TGG | + | chr4_2:68985620-68985639 | Msa0618120:intron | 25.0% |
| ! | CAATTCCAAGATAAATCATT+CGG | - | chr4_2:68985628-68985647 | None:intergenic | 25.0% |
| ! | TCTAGTGGTATATTATTCTT+TGG | - | chr4_2:68985680-68985699 | None:intergenic | 25.0% |
| !! | TAAATACAATAGATTGGTTG+GGG | + | chr4_2:68985729-68985748 | Msa0618120:intron | 25.0% |
| ! | CCACCAAAAAAAAAAAATCA+AGG | - | chr4_2:68985849-68985868 | None:intergenic | 25.0% |
| !!! | CCTTGATTTTTTTTTTTTGG+TGG | + | chr4_2:68985846-68985865 | Msa0618120:intron | 25.0% |
| !!! | TTTTTTTTTTTTGGTGGTGA+TGG | + | chr4_2:68985852-68985871 | Msa0618120:intron | 25.0% |
| !! | AATTTTCATTTCAGATGTAC+CGG | + | chr4_2:68985955-68985974 | Msa0618120:intron | 25.0% |
| ! | AAAGAGAAAGAGAAAAAGTA+TGG | - | chr4_2:68986120-68986139 | None:intergenic | 25.0% |
| !! | TTCAAATAAGTGACATCTTT+TGG | + | chr4_2:68986273-68986292 | Msa0618120:intron | 25.0% |
| ! | AAGTAAGTATCATTAGAGTT+GGG | - | chr4_2:68986540-68986559 | None:intergenic | 25.0% |
| ! | ATAGTTTACCTTGAATTGAT+GGG | - | chr4_2:68986937-68986956 | None:intergenic | 25.0% |
| ! | TATAGTTTACCTTGAATTGA+TGG | - | chr4_2:68986938-68986957 | None:intergenic | 25.0% |
| !! | ATCTTTTCTCTTCAAGAAAT+TGG | - | chr4_2:68987209-68987228 | None:intergenic | 25.0% |
| ! | AATTTCTTGAAGAGAAAAGA+TGG | + | chr4_2:68987208-68987227 | Msa0618120:CDS | 25.0% |
| ! | TGATTGTTCATGATATCTAA+GGG | - | chr4_2:68987237-68987256 | None:intergenic | 25.0% |
| ! | ATGATTGTTCATGATATCTA+AGG | - | chr4_2:68987238-68987257 | None:intergenic | 25.0% |
| ! | CATTAATAACTATATGCTAC+TGG | + | chr4_2:68987448-68987467 | Msa0618120:intron | 25.0% |
| ! | GTAAACTTGATAGGTAGTTT+TGG | - | chr4_2:68983290-68983309 | None:intergenic | 30.0% |
| GAAGGAAATGTAAACTTGAT+AGG | - | chr4_2:68983299-68983318 | None:intergenic | 30.0% | |
| AATGAACACAAAAGGGATAT+TGG | - | chr4_2:68983556-68983575 | None:intergenic | 30.0% | |
| AACAAGTTAGGAGATTGATT+AGG | - | chr4_2:68983715-68983734 | None:intergenic | 30.0% | |
| AAAACACATCTTCCTTTAGA+GGG | - | chr4_2:68983786-68983805 | None:intergenic | 30.0% | |
| GAGAAAGGAATTAACTGTAA+AGG | - | chr4_2:68984133-68984152 | None:intergenic | 30.0% | |
| GAATAATCAGAAAAGGAGAA+AGG | - | chr4_2:68984148-68984167 | None:intergenic | 30.0% | |
| AGTAGCTGAATAATCAGAAA+AGG | - | chr4_2:68984155-68984174 | None:intergenic | 30.0% | |
| TAGTAGAGTATAGTACTAGT+AGG | - | chr4_2:68984358-68984377 | None:intergenic | 30.0% | |
| GAATTAAAAGTGATGAGAAC+AGG | - | chr4_2:68984578-68984597 | None:intergenic | 30.0% | |
| AGCTTCTTCATTCAAATCAA+AGG | - | chr4_2:68984808-68984827 | None:intergenic | 30.0% | |
| TGATCAAGATGTTAACAATG+AGG | + | chr4_2:68984836-68984855 | Msa0618120:CDS | 30.0% | |
| TGTGATCATGAATTAGTGAA+TGG | + | chr4_2:68984873-68984892 | Msa0618120:CDS | 30.0% | |
| ! | TTAGTAAAGGATGATGATGA+AGG | + | chr4_2:68984918-68984937 | Msa0618120:CDS | 30.0% |
| AGTTCAACAAAAAGAAGTAG+TGG | + | chr4_2:68984948-68984967 | Msa0618120:CDS | 30.0% | |
| ATAAAAGAGTGATGAAGATC+AGG | - | chr4_2:68985044-68985063 | None:intergenic | 30.0% | |
| GTGTTCATTATTAATGTTGG+TGG | + | chr4_2:68985199-68985218 | Msa0618120:intron | 30.0% | |
| ACGTGAAACAAAAATATCAG+TGG | - | chr4_2:68985391-68985410 | None:intergenic | 30.0% | |
| CGAATGATTTATCTTGGAAT+TGG | + | chr4_2:68985626-68985645 | Msa0618120:intron | 30.0% | |
| GGCAGACAAAAAAAAATTCA+AGG | - | chr4_2:68986040-68986059 | None:intergenic | 30.0% | |
| !! | TGGACTTTCTTTTTCATGTA+GGG | - | chr4_2:68986091-68986110 | None:intergenic | 30.0% |
| !! | TTGGACTTTCTTTTTCATGT+AGG | - | chr4_2:68986092-68986111 | None:intergenic | 30.0% |
| !! | GAGAAAAAGTATGGTAGTTT+TGG | - | chr4_2:68986111-68986130 | None:intergenic | 30.0% |
| AAATGTGCACATGTGTAAAA+CGG | + | chr4_2:68986462-68986481 | Msa0618120:intron | 30.0% | |
| GAAGTAAGTATCATTAGAGT+TGG | - | chr4_2:68986541-68986560 | None:intergenic | 30.0% | |
| TATTACAATACAAGGGCTTA+GGG | + | chr4_2:68986650-68986669 | Msa0618120:intron | 30.0% | |
| AGAAATGGAACCTAATTCAT+GGG | - | chr4_2:68986761-68986780 | None:intergenic | 30.0% | |
| ATGTGAATGTGAATGTGATA+AGG | - | chr4_2:68986908-68986927 | None:intergenic | 30.0% | |
| ! | TAACTTTAATGCCACTTGAA+TGG | - | chr4_2:68986997-68987016 | None:intergenic | 30.0% |
| GATGATTTAAGTACCATTCT+TGG | - | chr4_2:68987038-68987057 | None:intergenic | 30.0% | |
| GGTACTTAAATCATCAATCT+TGG | + | chr4_2:68987043-68987062 | Msa0618120:CDS | 30.0% | |
| TGATCTTCCTTGTGTATTTA+TGG | - | chr4_2:68987112-68987131 | None:intergenic | 30.0% | |
| TCATGAACAATCATCCATAT+TGG | + | chr4_2:68987244-68987263 | Msa0618120:CDS | 30.0% | |
| AATGTTACCTTAATCCGAAA+CGG | - | chr4_2:68987432-68987451 | None:intergenic | 30.0% | |
| TGGAACAAATAGTATAGTGA+CGG | + | chr4_2:68987468-68987487 | Msa0618120:intron | 30.0% | |
| ATTAGCAAAAGAAACGTAGA+AGG | - | chr4_2:68987582-68987601 | None:intergenic | 30.0% | |
| ATTGCTGAAAGACAAACAAT+GGG | + | chr4_2:68987707-68987726 | Msa0618120:CDS | 30.0% | |
| CTGAGTTTAAGTCAAACAAA+CGG | + | chr4_2:68987744-68987763 | Msa0618120:CDS | 30.0% | |
| !!! | CTTGATAGGTAGTTTTGGTT+TGG | - | chr4_2:68983285-68983304 | None:intergenic | 35.0% |
| CTTGGAAGAGAAATAATCGA+GGG | + | chr4_2:68983415-68983434 | Msa0618120:five_prime_UTR | 35.0% | |
| ACATCTTCATCTTGAATGGT+TGG | + | chr4_2:68983440-68983459 | Msa0618120:intron | 35.0% | |
| AACCATGAAGATAGAGATGA+GGG | - | chr4_2:68983530-68983549 | None:intergenic | 35.0% | |
| GAAAACACATCTTCCTTTAG+AGG | - | chr4_2:68983787-68983806 | None:intergenic | 35.0% | |
| TTAGTGACAGATCAACACAT+TGG | - | chr4_2:68983962-68983981 | None:intergenic | 35.0% | |
| CCTGTGTAAGATACGTTTAT+TGG | - | chr4_2:68983996-68984015 | None:intergenic | 35.0% | |
| CCAATAAACGTATCTTACAC+AGG | + | chr4_2:68983993-68984012 | Msa0618120:intron | 35.0% | |
| AAGGAATTAACTGTAAAGGG+TGG | - | chr4_2:68984129-68984148 | None:intergenic | 35.0% | |
| CTGTCAGAAATTTGATTCAC+AGG | + | chr4_2:68984254-68984273 | Msa0618120:intron | 35.0% | |
| AGAGAATAGAGTAGAGATGT+TGG | + | chr4_2:68984287-68984306 | Msa0618120:intron | 35.0% | |
| ! | ATAGAGTAGAGATGTTGGTT+TGG | + | chr4_2:68984292-68984311 | Msa0618120:intron | 35.0% |
| CTAGAATGGCATGGTAATAA+AGG | - | chr4_2:68984497-68984516 | None:intergenic | 35.0% | |
| !! | TAGGTACTGAAATGCTAGAA+TGG | - | chr4_2:68984511-68984530 | None:intergenic | 35.0% |
| ATGAGAAACATGAGAATGAG+AGG | + | chr4_2:68984715-68984734 | Msa0618120:CDS | 35.0% | |
| TAACAATGAGGAGAATGATG+AGG | + | chr4_2:68984848-68984867 | Msa0618120:CDS | 35.0% | |
| ATGTTAGATCAAAGATGCCT+AGG | + | chr4_2:68985006-68985025 | Msa0618120:CDS | 35.0% | |
| ! | CTTTTATGCATGCTGTTGAA+AGG | + | chr4_2:68985057-68985076 | Msa0618120:CDS | 35.0% |
| ! | ATCAGTTGAAGCACCAATTT+GGG | - | chr4_2:68985242-68985261 | None:intergenic | 35.0% |
| !!! | TGGTGGTGATGGTATTTTTT+TGG | + | chr4_2:68985863-68985882 | Msa0618120:intron | 35.0% |
| ! | CTTCCCAGCAATTTCATTTT+GGG | + | chr4_2:68986170-68986189 | Msa0618120:intron | 35.0% |
| ! | TTCCCAGCAATTTCATTTTG+GGG | + | chr4_2:68986171-68986190 | Msa0618120:intron | 35.0% |
| GTATTACAATACAAGGGCTT+AGG | + | chr4_2:68986649-68986668 | Msa0618120:intron | 35.0% | |
| GAGAAATGGAACCTAATTCA+TGG | - | chr4_2:68986762-68986781 | None:intergenic | 35.0% | |
| ! | GAAATGTTGATGAGGTATCA+TGG | - | chr4_2:68986803-68986822 | None:intergenic | 35.0% |
| ACCTCATCAACATTTCAAGA+TGG | + | chr4_2:68986807-68986826 | Msa0618120:CDS | 35.0% | |
| CAACATTTCAAGATGGCAAA+TGG | + | chr4_2:68986814-68986833 | Msa0618120:CDS | 35.0% | |
| TGTGGAAATTATAACTGTGC+TGG | - | chr4_2:68986867-68986886 | None:intergenic | 35.0% | |
| TGTGAATGTGATAAGGATGA+GGG | - | chr4_2:68986901-68986920 | None:intergenic | 35.0% | |
| ATGTGAATGTGATAAGGATG+AGG | - | chr4_2:68986902-68986921 | None:intergenic | 35.0% | |
| ATTCAAAGCCCATCAATTCA+AGG | + | chr4_2:68986926-68986945 | Msa0618120:CDS | 35.0% | |
| ! | TTTTACTTAGGCACCAAGAA+TGG | + | chr4_2:68987022-68987041 | Msa0618120:intron | 35.0% |
| AATTCATTGCTCATGTAGCT+TGG | - | chr4_2:68987072-68987091 | None:intergenic | 35.0% | |
| TGTGTATTTATGGCTGTTGA+TGG | - | chr4_2:68987102-68987121 | None:intergenic | 35.0% | |
| TCAACAGCCATAAATACACA+AGG | + | chr4_2:68987102-68987121 | Msa0618120:CDS | 35.0% | |
| TTCTCTTCAAGAAATTGGCT+TGG | - | chr4_2:68987204-68987223 | None:intergenic | 35.0% | |
| TTGTTCATGATATCTAAGGG+AGG | - | chr4_2:68987234-68987253 | None:intergenic | 35.0% | |
| ATGTTACCTTAATCCGAAAC+GGG | - | chr4_2:68987431-68987450 | None:intergenic | 35.0% | |
| TAGTGACAAGAGAATTAGAG+AGG | - | chr4_2:68987520-68987539 | None:intergenic | 35.0% | |
| CATTGCTGAAAGACAAACAA+TGG | + | chr4_2:68987706-68987725 | Msa0618120:CDS | 35.0% | |
| CTTAAACTCAGTTGCAAATC+AGG | - | chr4_2:68987735-68987754 | None:intergenic | 35.0% | |
| !! | CTGTTGATCTTTTGAGTGGA+AGG | - | chr4_2:68983317-68983336 | None:intergenic | 40.0% |
| ! | GATGCTGTTGATCTTTTGAG+TGG | - | chr4_2:68983321-68983340 | None:intergenic | 40.0% |
| ! | CCTCGATTATTTCTCTTCCA+AGG | - | chr4_2:68983417-68983436 | None:intergenic | 40.0% |
| CCTTGGAAGAGAAATAATCG+AGG | + | chr4_2:68983414-68983433 | Msa0618120:five_prime_UTR | 40.0% | |
| GGACACATCTTCATCTTGAA+TGG | + | chr4_2:68983436-68983455 | Msa0618120:five_prime_UTR | 40.0% | |
| ACCATGAAGATAGAGATGAG+GGG | - | chr4_2:68983529-68983548 | None:intergenic | 40.0% | |
| GAACCATGAAGATAGAGATG+AGG | - | chr4_2:68983531-68983550 | None:intergenic | 40.0% | |
| GAACACAAAAGGGATATTGG+TGG | - | chr4_2:68983553-68983572 | None:intergenic | 40.0% | |
| TTAGAGGGATGTACTTCTGA+GGG | - | chr4_2:68983771-68983790 | None:intergenic | 40.0% | |
| TTTAGAGGGATGTACTTCTG+AGG | - | chr4_2:68983772-68983791 | None:intergenic | 40.0% | |
| ! | TCAGAAGTACATCCCTCTAA+AGG | + | chr4_2:68983771-68983790 | Msa0618120:intron | 40.0% |
| GAATTAACTGTAAAGGGTGG+AGG | - | chr4_2:68984126-68984145 | None:intergenic | 40.0% | |
| ACTGAAATGCTAGAATGGCA+TGG | - | chr4_2:68984506-68984525 | None:intergenic | 40.0% | |
| !! | ATGAGAATGAGAGGAGTACT+GGG | + | chr4_2:68984724-68984743 | Msa0618120:CDS | 40.0% |
| ! | CATCAGTTGAAGCACCAATT+TGG | - | chr4_2:68985243-68985262 | None:intergenic | 40.0% |
| CTTCAACTGATGAATGTGAG+AGG | + | chr4_2:68985251-68985270 | Msa0618120:CDS | 40.0% | |
| AACCTACAAACATTATCCCC+CGG | - | chr4_2:68985497-68985516 | None:intergenic | 40.0% | |
| GGCGTGTCTAACAAGATTTA+GGG | - | chr4_2:68986019-68986038 | None:intergenic | 40.0% | |
| AGGCGTGTCTAACAAGATTT+AGG | - | chr4_2:68986020-68986039 | None:intergenic | 40.0% | |
| CCAAAATGAAATTGCTGGGA+AGG | - | chr4_2:68986172-68986191 | None:intergenic | 40.0% | |
| ! | CCTTCCCAGCAATTTCATTT+TGG | + | chr4_2:68986169-68986188 | Msa0618120:intron | 40.0% |
| ! | TCCCAGCAATTTCATTTTGG+GGG | + | chr4_2:68986172-68986191 | Msa0618120:intron | 40.0% |
| TATTTGAAGAGTGAGAGCAG+CGG | - | chr4_2:68986261-68986280 | None:intergenic | 40.0% | |
| CACAGATCAACCCATGAATT+AGG | + | chr4_2:68986748-68986767 | Msa0618120:CDS | 40.0% | |
| ! | ATGAGGTATCATGGACTGAT+GGG | - | chr4_2:68986794-68986813 | None:intergenic | 40.0% |
| GCCATCTTGAAATGTTGATG+AGG | - | chr4_2:68986811-68986830 | None:intergenic | 40.0% | |
| CATTTCAAGATGGCAAATGG+TGG | + | chr4_2:68986817-68986836 | Msa0618120:CDS | 40.0% | |
| !! | AAGCTGCTGGTTCAAAGTTA+TGG | - | chr4_2:68987136-68987155 | None:intergenic | 40.0% |
| ! | TATCCTTAACTTGAAGCTGC+TGG | - | chr4_2:68987149-68987168 | None:intergenic | 40.0% |
| !! | AGAAATTGGCTTGGTCTCAT+AGG | - | chr4_2:68987195-68987214 | None:intergenic | 40.0% |
| TTGGAAACAACACAAGAAGC+AGG | + | chr4_2:68987340-68987359 | Msa0618120:CDS | 40.0% | |
| TGGAAACAACACAAGAAGCA+GGG | + | chr4_2:68987341-68987360 | Msa0618120:CDS | 40.0% | |
| TTGAATTTGATCCCCCGTTT+CGG | + | chr4_2:68987415-68987434 | Msa0618120:CDS | 40.0% | |
| TGTTACCTTAATCCGAAACG+GGG | - | chr4_2:68987430-68987449 | None:intergenic | 40.0% | |
| CAAACAAACGGCAACAATGA+TGG | + | chr4_2:68987756-68987775 | Msa0618120:CDS | 40.0% | |
| AACAATGATGGCAAGAGTGA+TGG | + | chr4_2:68987768-68987787 | Msa0618120:CDS | 40.0% | |
| !! | GAGTTTCGTGTCGATTTCTT+TGG | - | chr4_2:68987805-68987824 | None:intergenic | 40.0% |
| ACCCCTCATCTCTATCTTCA+TGG | + | chr4_2:68983525-68983544 | Msa0618120:intron | 45.0% | |
| ! | CATGAGAATGAGAGGAGTAC+TGG | + | chr4_2:68984723-68984742 | Msa0618120:CDS | 45.0% |
| GAAGAGTGAAGAACATGCTG+AGG | + | chr4_2:68984746-68984765 | Msa0618120:CDS | 45.0% | |
| ACATGCTGAGGACACTTCAA+TGG | + | chr4_2:68984758-68984777 | Msa0618120:CDS | 45.0% | |
| GATCAAAGATGCCTAGGCTT+AGG | + | chr4_2:68985012-68985031 | Msa0618120:CDS | 45.0% | |
| ATGCATGCTGTTGAAAGGCT+TGG | + | chr4_2:68985062-68985081 | Msa0618120:CDS | 45.0% | |
| !! | TTAATGTTGGTGGTGCATGC+AGG | + | chr4_2:68985209-68985228 | Msa0618120:intron | 45.0% |
| TCATGTCAAGAGTCACTTGC+AGG | + | chr4_2:68985286-68985305 | Msa0618120:CDS | 45.0% | |
| CTCTTTATTCCCCGCAAAAC+AGG | + | chr4_2:68986134-68986153 | Msa0618120:intron | 45.0% | |
| TATTCCCCGCAAAACAGGTT+TGG | + | chr4_2:68986139-68986158 | Msa0618120:intron | 45.0% | |
| ATTCCCCGCAAAACAGGTTT+GGG | + | chr4_2:68986140-68986159 | Msa0618120:intron | 45.0% | |
| CCCCCCAAAATGAAATTGCT+GGG | - | chr4_2:68986176-68986195 | None:intergenic | 45.0% | |
| ! | CCCAGCAATTTCATTTTGGG+GGG | + | chr4_2:68986173-68986192 | Msa0618120:intron | 45.0% |
| TCCCCCCAAAATGAAATTGC+TGG | - | chr4_2:68986177-68986196 | None:intergenic | 45.0% | |
| !! | GCAATTTCATTTTGGGGGGA+AGG | + | chr4_2:68986177-68986196 | Msa0618120:intron | 45.0% |
| !! | TCATGGGTTGATCTGTGTGT+TGG | - | chr4_2:68986745-68986764 | None:intergenic | 45.0% |
| ! | ATGGGCTACATGGTGAGAAA+TGG | - | chr4_2:68986776-68986795 | None:intergenic | 45.0% |
| ! | GATGAGGTATCATGGACTGA+TGG | - | chr4_2:68986795-68986814 | None:intergenic | 45.0% |
| ! | GAACCAGCAGCTTCAAGTTA+AGG | + | chr4_2:68987143-68987162 | Msa0618120:CDS | 45.0% |
| GTTACCTTAATCCGAAACGG+GGG | - | chr4_2:68987429-68987448 | None:intergenic | 45.0% | |
| !! | GTAAAATATATTAAAATAAA+AGG | + | chr4_2:68985409-68985428 | Msa0618120:intron | 5.0% |
| !! | AAAATATATTAAAATAAAAG+GGG | + | chr4_2:68985411-68985430 | Msa0618120:intron | 5.0% |
| !!! | ATTTTTTTTATTGATTAATT+TGG | - | chr4_2:68985604-68985623 | None:intergenic | 5.0% |
| CAAAGATGCCTAGGCTTAGG+TGG | + | chr4_2:68985015-68985034 | Msa0618120:CDS | 50.0% | |
| CATGCTGTTGAAAGGCTTGG+AGG | + | chr4_2:68985065-68985084 | Msa0618120:CDS | 50.0% | |
| TGCAGGAGCAACACCCAAAT+TGG | + | chr4_2:68985226-68985245 | Msa0618120:intron | 50.0% | |
| CTACAAACATTATCCCCCGG+TGG | - | chr4_2:68985494-68985513 | None:intergenic | 50.0% | |
| CACCGGGGGATAATGTTTGT+AGG | + | chr4_2:68985492-68985511 | Msa0618120:intron | 50.0% | |
| CCTCGTCAAGTTTCTTGCTC+CGG | - | chr4_2:68985977-68985996 | None:intergenic | 50.0% | |
| AGCAAGAAACTTGACGAGGC+TGG | + | chr4_2:68985978-68985997 | Msa0618120:CDS | 50.0% | |
| AAACTTGACGAGGCTGGACA+AGG | + | chr4_2:68985984-68986003 | Msa0618120:CDS | 50.0% | |
| TTCCCCGCAAAACAGGTTTG+GGG | + | chr4_2:68986141-68986160 | Msa0618120:intron | 50.0% | |
| !! | TCATGGACTGATGGGCTACA+TGG | - | chr4_2:68986786-68986805 | None:intergenic | 50.0% |
| GTGATAAGGATGAGGGATGC+AGG | - | chr4_2:68986894-68986913 | None:intergenic | 50.0% | |
| TGGTCTCATAGGAGCAAGTG+TGG | - | chr4_2:68987184-68987203 | None:intergenic | 50.0% | |
| AACATCACTTAGACCCGCTG+AGG | + | chr4_2:68987311-68987330 | Msa0618120:CDS | 50.0% | |
| TTTCCAAAGCTCACCTCAGC+GGG | - | chr4_2:68987327-68987346 | None:intergenic | 50.0% | |
| GTTTCCAAAGCTCACCTCAG+CGG | - | chr4_2:68987328-68987347 | None:intergenic | 50.0% | |
| TGATCCCCCGTTTCGGATTA+AGG | + | chr4_2:68987422-68987441 | Msa0618120:CDS | 50.0% | |
| TCAGGAGTCCACCTAAGCCT+AGG | - | chr4_2:68985026-68985045 | None:intergenic | 55.0% | |
| ACATTATCCCCCGGTGGACA+CGG | - | chr4_2:68985488-68985507 | None:intergenic | 55.0% | |
| CCGGAGCAAGAAACTTGACG+AGG | + | chr4_2:68985974-68985993 | Msa0618120:CDS | 55.0% | |
| TGACGAGGCTGGACAAGGTA+AGG | + | chr4_2:68985989-68986008 | Msa0618120:intron | 55.0% | |
| TCCCCGCAAAACAGGTTTGG+GGG | + | chr4_2:68986142-68986161 | Msa0618120:intron | 55.0% | |
| ! | ACCCCCCAAACCTGTTTTGC+GGG | - | chr4_2:68986147-68986166 | None:intergenic | 55.0% |
| ! | CACCCCCCAAACCTGTTTTG+CGG | - | chr4_2:68986148-68986167 | None:intergenic | 55.0% |
| ATGAGGGATGCAGGAGACTG+TGG | - | chr4_2:68986885-68986904 | None:intergenic | 55.0% | |
| ! | CCCCCCAAACCTGTTTTGCG+GGG | - | chr4_2:68986146-68986165 | None:intergenic | 60.0% |
| CCCCGCAAAACAGGTTTGGG+GGG | + | chr4_2:68986143-68986162 | Msa0618120:intron | 60.0% | |
| AGACCCGCTGAGGTGAGCTT+TGG | + | chr4_2:68987321-68987340 | Msa0618120:CDS | 60.0% | |
| GCAGGGTGATCCGTGTCCAC+CGG | + | chr4_2:68985475-68985494 | Msa0618120:intron | 65.0% | |
| CAGGGTGATCCGTGTCCACC+GGG | + | chr4_2:68985476-68985495 | Msa0618120:intron | 65.0% | |
| AGGGTGATCCGTGTCCACCG+GGG | + | chr4_2:68985477-68985496 | Msa0618120:intron | 65.0% | |
| GGGTGATCCGTGTCCACCGG+GGG | + | chr4_2:68985478-68985497 | Msa0618120:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68983272 | 68987883 | 68983272 | ID=Msa0618120;Name=Msa0618120 |
| chr4_2 | mRNA | 68983272 | 68987883 | 68983272 | ID=Msa0618120-mRNA-1;Parent=Msa0618120;Name=Msa0618120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=235|0.71|0.87|0.87|0.85|0.75|8|47|436 |
| chr4_2 | exon | 68983272 | 68983457 | 68983272 | ID=Msa0618120-mRNA-1:exon:19833;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68984647 | 68985095 | 68984647 | ID=Msa0618120-mRNA-1:exon:19834;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68985231 | 68985307 | 68985231 | ID=Msa0618120-mRNA-1:exon:19835;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68985479 | 68985505 | 68985479 | ID=Msa0618120-mRNA-1:exon:19836;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68985969 | 68986005 | 68985969 | ID=Msa0618120-mRNA-1:exon:19837;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68986734 | 68986947 | 68986734 | ID=Msa0618120-mRNA-1:exon:19838;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68987032 | 68987443 | 68987032 | ID=Msa0618120-mRNA-1:exon:19839;Parent=Msa0618120-mRNA-1 |
| chr4_2 | exon | 68987693 | 68987883 | 68987693 | ID=Msa0618120-mRNA-1:exon:19840;Parent=Msa0618120-mRNA-1 |
| chr4_2 | five_prime_UTR | 68983272 | 68983457 | 68983272 | ID=Msa0618120-mRNA-1:five_prime_utr;Parent=Msa0618120-mRNA-1 |
| chr4_2 | five_prime_UTR | 68984647 | 68984695 | 68984647 | ID=Msa0618120-mRNA-1:five_prime_utr;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68984696 | 68985095 | 68984696 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68985231 | 68985307 | 68985231 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68985479 | 68985505 | 68985479 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68985969 | 68986005 | 68985969 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68986734 | 68986947 | 68986734 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68987032 | 68987443 | 68987032 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | CDS | 68987693 | 68987836 | 68987693 | ID=Msa0618120-mRNA-1:cds;Parent=Msa0618120-mRNA-1 |
| chr4_2 | three_prime_UTR | 68987837 | 68987883 | 68987837 | ID=Msa0618120-mRNA-1:three_prime_utr;Parent=Msa0618120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
