Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701160 | XP_013446647.1 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701160 | sp|Q700D9|MYBF_ARATH | 55.435 | 92 | 32 | 1 | 89 | 180 | 3 | 85 | 5.10e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701160 | A0A072TT31 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0701160 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618120 | Msa0701160 | 0.986973 | 1.297939e-168 | -8.615850e-47 |
| Msa0657130 | Msa0701160 | 0.830244 | 3.276268e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701160 | MtrunA17_Chr8g0379121 | 93.409 | 440 | 13 | 4 | 1 | 436 | 1 | 428 | 0.0 | 825 |
| Msa0701160 | MtrunA17_Chr2g0283951 | 47.838 | 370 | 111 | 11 | 89 | 436 | 69 | 378 | 4.99e-90 | 278 |
| Msa0701160 | MtrunA17_Chr2g0320231 | 40.850 | 306 | 121 | 13 | 11 | 311 | 12 | 262 | 3.87e-41 | 150 |
| Msa0701160 | MtrunA17_Chr7g0243081 | 53.125 | 128 | 48 | 2 | 56 | 183 | 21 | 136 | 1.43e-35 | 134 |
| Msa0701160 | MtrunA17_Chr2g0288601 | 77.966 | 59 | 13 | 0 | 101 | 159 | 63 | 121 | 9.92e-28 | 107 |
| Msa0701160 | MtrunA17_Chr1g0162931 | 60.714 | 84 | 24 | 1 | 97 | 180 | 6 | 80 | 5.20e-27 | 109 |
| Msa0701160 | MtrunA17_Chr1g0210911 | 56.044 | 91 | 26 | 2 | 84 | 174 | 2 | 78 | 1.30e-25 | 106 |
| Msa0701160 | MtrunA17_Chr3g0095611 | 49.462 | 93 | 33 | 3 | 94 | 185 | 4 | 83 | 6.46e-22 | 93.6 |
| Msa0701160 | MtrunA17_Chr1g0154261 | 55.172 | 87 | 27 | 3 | 94 | 179 | 113 | 188 | 8.17e-20 | 89.4 |
| Msa0701160 | MtrunA17_Chr6g0479431 | 50.588 | 85 | 19 | 2 | 104 | 174 | 183 | 258 | 2.70e-17 | 83.2 |
| Msa0701160 | MtrunA17_Chr7g0261911 | 70.000 | 50 | 15 | 0 | 110 | 159 | 263 | 312 | 5.45e-17 | 83.2 |
| Msa0701160 | MtrunA17_Chr5g0410741 | 56.164 | 73 | 22 | 2 | 108 | 179 | 218 | 281 | 1.39e-16 | 81.3 |
| Msa0701160 | MtrunA17_Chr8g0366281 | 55.882 | 68 | 21 | 1 | 108 | 175 | 172 | 230 | 1.47e-16 | 80.9 |
| Msa0701160 | MtrunA17_Chr1g0190301 | 68.000 | 50 | 16 | 0 | 110 | 159 | 176 | 225 | 2.00e-16 | 80.5 |
| Msa0701160 | MtrunA17_Chr7g0274471 | 68.000 | 50 | 16 | 0 | 110 | 159 | 219 | 268 | 2.08e-16 | 80.9 |
| Msa0701160 | MtrunA17_Chr3g0109981 | 58.209 | 67 | 19 | 1 | 108 | 174 | 273 | 330 | 2.53e-16 | 80.9 |
| Msa0701160 | MtrunA17_Chr6g0461641 | 62.000 | 50 | 19 | 0 | 110 | 159 | 43 | 92 | 4.26e-15 | 76.6 |
| Msa0701160 | MtrunA17_Chr5g0409731 | 50.725 | 69 | 27 | 1 | 98 | 159 | 7 | 75 | 7.17e-15 | 75.1 |
| Msa0701160 | MtrunA17_Chr7g0258551 | 58.182 | 55 | 23 | 0 | 105 | 159 | 208 | 262 | 1.44e-14 | 75.1 |
| Msa0701160 | MtrunA17_Chr2g0321461 | 60.000 | 50 | 20 | 0 | 110 | 159 | 46 | 95 | 1.91e-14 | 74.7 |
| Msa0701160 | MtrunA17_Chr7g0254981 | 65.306 | 49 | 17 | 0 | 111 | 159 | 52 | 100 | 4.27e-14 | 72.4 |
| Msa0701160 | MtrunA17_Chr1g0175091 | 63.265 | 49 | 18 | 0 | 111 | 159 | 260 | 308 | 4.73e-14 | 73.6 |
| Msa0701160 | MtrunA17_Chr1g0175081 | 57.143 | 49 | 21 | 0 | 111 | 159 | 24 | 72 | 8.09e-14 | 67.4 |
| Msa0701160 | MtrunA17_Chr1g0197171 | 60.000 | 50 | 20 | 0 | 110 | 159 | 45 | 94 | 8.94e-14 | 71.6 |
| Msa0701160 | MtrunA17_Chr2g0290991 | 60.000 | 50 | 20 | 0 | 110 | 159 | 40 | 89 | 1.10e-13 | 71.6 |
| Msa0701160 | MtrunA17_Chr2g0291021 | 65.306 | 49 | 17 | 0 | 111 | 159 | 51 | 99 | 1.82e-13 | 71.2 |
| Msa0701160 | MtrunA17_Chr5g0417521 | 52.000 | 50 | 24 | 0 | 110 | 159 | 16 | 65 | 2.27e-13 | 71.2 |
| Msa0701160 | MtrunA17_Chr8g0356501 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 2.99e-13 | 70.9 |
| Msa0701160 | MtrunA17_Chr2g0310011 | 56.000 | 50 | 22 | 0 | 110 | 159 | 36 | 85 | 6.38e-13 | 69.7 |
| Msa0701160 | MtrunA17_Chr4g0042451 | 52.000 | 50 | 24 | 0 | 110 | 159 | 18 | 67 | 6.29e-12 | 66.6 |
| Msa0701160 | MtrunA17_Chr7g0258531 | 39.604 | 101 | 57 | 1 | 63 | 159 | 163 | 263 | 1.24e-11 | 65.9 |
| Msa0701160 | MtrunA17_Chr1g0175071 | 57.143 | 49 | 21 | 0 | 111 | 159 | 179 | 227 | 1.45e-11 | 65.5 |
| Msa0701160 | MtrunA17_Chr7g0242521 | 59.615 | 52 | 18 | 1 | 111 | 159 | 15 | 66 | 4.66e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701160 | AT2G38300.1 | 66.667 | 87 | 20 | 1 | 97 | 183 | 42 | 119 | 1.05e-31 | 124 |
| Msa0701160 | AT2G42660.1 | 70.513 | 78 | 14 | 1 | 99 | 176 | 40 | 108 | 2.24e-29 | 115 |
| Msa0701160 | AT2G40260.1 | 62.500 | 104 | 25 | 3 | 79 | 177 | 47 | 141 | 1.61e-28 | 116 |
| Msa0701160 | AT4G04605.1 | 57.292 | 96 | 32 | 1 | 101 | 196 | 6 | 92 | 2.73e-28 | 111 |
| Msa0701160 | AT2G02060.2 | 64.103 | 78 | 28 | 0 | 82 | 159 | 2 | 79 | 2.11e-26 | 107 |
| Msa0701160 | AT2G02060.1 | 64.103 | 78 | 28 | 0 | 82 | 159 | 2 | 79 | 2.11e-26 | 107 |
| Msa0701160 | AT1G14600.1 | 55.435 | 92 | 32 | 1 | 89 | 180 | 3 | 85 | 5.18e-26 | 106 |
| Msa0701160 | AT4G04580.1 | 52.564 | 78 | 28 | 1 | 101 | 178 | 6 | 74 | 6.84e-19 | 84.0 |
| Msa0701160 | AT5G42630.2 | 51.087 | 92 | 30 | 3 | 88 | 179 | 90 | 166 | 1.32e-18 | 84.7 |
| Msa0701160 | AT5G42630.1 | 51.087 | 92 | 30 | 3 | 88 | 179 | 90 | 166 | 2.09e-18 | 85.5 |
| Msa0701160 | AT4G04555.1 | 52.564 | 78 | 28 | 1 | 101 | 178 | 6 | 74 | 3.24e-18 | 80.1 |
| Msa0701160 | AT1G32240.2 | 58.209 | 67 | 19 | 1 | 108 | 174 | 212 | 269 | 1.83e-16 | 80.9 |
| Msa0701160 | AT1G32240.1 | 58.209 | 67 | 19 | 1 | 108 | 174 | 212 | 269 | 2.19e-16 | 80.9 |
| Msa0701160 | AT5G16560.1 | 58.209 | 67 | 19 | 1 | 108 | 174 | 218 | 275 | 2.57e-16 | 80.9 |
| Msa0701160 | AT4G17695.1 | 55.714 | 70 | 22 | 1 | 108 | 177 | 163 | 223 | 3.30e-16 | 79.7 |
| Msa0701160 | AT5G45580.2 | 55.738 | 61 | 27 | 0 | 99 | 159 | 13 | 73 | 1.22e-15 | 77.4 |
| Msa0701160 | AT4G28610.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 227 | 275 | 2.62e-15 | 77.8 |
| Msa0701160 | AT5G45580.1 | 58.182 | 55 | 23 | 0 | 105 | 159 | 3 | 57 | 3.76e-15 | 75.9 |
| Msa0701160 | AT3G04450.3 | 63.265 | 49 | 18 | 0 | 111 | 159 | 240 | 288 | 4.47e-15 | 76.3 |
| Msa0701160 | AT5G29000.4 | 59.677 | 62 | 24 | 1 | 98 | 159 | 221 | 281 | 4.55e-15 | 76.3 |
| Msa0701160 | AT5G29000.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 190 | 238 | 5.36e-15 | 76.6 |
| Msa0701160 | AT5G29000.3 | 67.347 | 49 | 16 | 0 | 111 | 159 | 190 | 238 | 5.36e-15 | 76.6 |
| Msa0701160 | AT3G04450.4 | 63.265 | 49 | 18 | 0 | 111 | 159 | 200 | 248 | 5.56e-15 | 76.6 |
| Msa0701160 | AT3G04450.2 | 63.265 | 49 | 18 | 0 | 111 | 159 | 200 | 248 | 5.56e-15 | 76.6 |
| Msa0701160 | AT5G29000.2 | 61.818 | 55 | 21 | 0 | 105 | 159 | 227 | 281 | 5.93e-15 | 76.6 |
| Msa0701160 | AT3G04450.1 | 63.265 | 49 | 18 | 0 | 111 | 159 | 240 | 288 | 6.19e-15 | 77.0 |
| Msa0701160 | AT3G13040.3 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0701160 | AT3G13040.1 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0701160 | AT3G13040.2 | 67.347 | 49 | 16 | 0 | 111 | 159 | 243 | 291 | 1.58e-14 | 75.9 |
| Msa0701160 | AT3G04030.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 4.40e-14 | 73.9 |
| Msa0701160 | AT3G04030.3 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 5.20e-14 | 73.9 |
| Msa0701160 | AT3G12730.1 | 58.000 | 50 | 21 | 0 | 110 | 159 | 24 | 73 | 6.90e-14 | 71.2 |
| Msa0701160 | AT5G18240.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 8.56e-14 | 73.2 |
| Msa0701160 | AT5G18240.3 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 8.56e-14 | 73.2 |
| Msa0701160 | AT5G18240.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.65e-14 | 73.2 |
| Msa0701160 | AT5G18240.4 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.65e-14 | 73.2 |
| Msa0701160 | AT5G18240.5 | 56.000 | 50 | 22 | 0 | 110 | 159 | 46 | 95 | 9.73e-14 | 73.2 |
| Msa0701160 | AT2G01060.1 | 65.306 | 49 | 17 | 0 | 111 | 159 | 17 | 65 | 1.21e-13 | 71.6 |
| Msa0701160 | AT4G13640.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 3.21e-13 | 70.5 |
| Msa0701160 | AT3G24120.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 42 | 91 | 3.24e-13 | 70.5 |
| Msa0701160 | AT4G13640.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 38 | 87 | 3.32e-13 | 70.5 |
| Msa0701160 | AT3G24120.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 42 | 91 | 3.40e-13 | 70.5 |
| Msa0701160 | AT2G06020.1 | 39.773 | 88 | 53 | 0 | 72 | 159 | 49 | 136 | 4.54e-13 | 70.1 |
| Msa0701160 | AT1G69580.1 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 5.83e-13 | 70.1 |
| Msa0701160 | AT1G79430.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 6.06e-13 | 70.1 |
| Msa0701160 | AT1G69580.2 | 56.000 | 50 | 22 | 0 | 110 | 159 | 35 | 84 | 6.09e-13 | 70.1 |
| Msa0701160 | AT5G06800.3 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 8.90e-13 | 68.9 |
| Msa0701160 | AT2G20400.1 | 48.101 | 79 | 32 | 1 | 111 | 189 | 233 | 302 | 1.30e-12 | 69.7 |
| Msa0701160 | AT2G20400.2 | 63.265 | 49 | 18 | 0 | 111 | 159 | 233 | 281 | 1.56e-12 | 69.3 |
| Msa0701160 | AT5G06800.1 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 2.66e-12 | 68.6 |
| Msa0701160 | AT5G06800.2 | 59.184 | 49 | 20 | 0 | 111 | 159 | 194 | 242 | 2.76e-12 | 68.6 |
| Msa0701160 | AT3G04030.2 | 54.000 | 50 | 22 | 1 | 110 | 159 | 46 | 94 | 1.17e-11 | 66.6 |
Find 101 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCTTCCTTGTGTATTTA+TGG | 0.141395 | 4_4:-72488717 | None:intergenic |
| CATCAGTTGAAGCACCAATT+TGG | 0.203737 | 4_4:-72486849 | None:intergenic |
| GATGATTTAAGTACCATTCT+TGG | 0.272460 | 4_4:-72488643 | None:intergenic |
| TTTGGTTTGGAGTGTGTTAT+TGG | 0.285452 | 4_4:-72484891 | None:intergenic |
| CTTAAACTCAGTTGCAAATC+AGG | 0.297702 | 4_4:-72489340 | None:intergenic |
| ATGATTGTTCATGATATCTA+AGG | 0.331312 | 4_4:-72488843 | None:intergenic |
| ATCAGTTGAAGCACCAATTT+GGG | 0.338016 | 4_4:-72486848 | None:intergenic |
| TATAGTTTACCTTGAATTGA+TGG | 0.341831 | 4_4:-72488543 | None:intergenic |
| GAACCAGCAGCTTCAAGTTA+AGG | 0.347972 | 4_4:+72488751 | Msa0701160:CDS |
| GAGTTTCGTGTCGATTTCTT+TGG | 0.349363 | 4_4:-72489410 | None:intergenic |
| GTAAACTTGATAGGTAGTTT+TGG | 0.349834 | 4_4:-72484909 | None:intergenic |
| TGTGTATTTATGGCTGTTGA+TGG | 0.356390 | 4_4:-72488707 | None:intergenic |
| TGCAGGAGCAACACCCAAAT+TGG | 0.368712 | 4_4:+72486835 | Msa0701160:intron |
| CACAGATCAACCCATGAATT+AGG | 0.371135 | 4_4:+72488356 | Msa0701160:CDS |
| TCATGAACAATCATCCATAT+TGG | 0.374740 | 4_4:+72488852 | Msa0701160:CDS |
| AAGCTGCTGGTTCAAAGTTA+TGG | 0.381198 | 4_4:-72488741 | None:intergenic |
| CATGAGAATGAGAGGAGTAC+TGG | 0.386029 | 4_4:+72486332 | Msa0701160:CDS |
| AGAAATTGGCTTGGTCTCAT+AGG | 0.398094 | 4_4:-72488800 | None:intergenic |
| GGTACTTAAATCATCAATCT+TGG | 0.408196 | 4_4:+72488651 | Msa0701160:CDS |
| TCATGTCAAGAGTCACTTGC+AGG | 0.410009 | 4_4:+72486895 | Msa0701160:CDS |
| GAAGGAAATGTAAACTTGAT+AGG | 0.411065 | 4_4:-72484918 | None:intergenic |
| GTGATAAGGATGAGGGATGC+AGG | 0.412034 | 4_4:-72488499 | None:intergenic |
| ATGTTACCTTAATCCGAAAC+GGG | 0.413271 | 4_4:-72489036 | None:intergenic |
| TATATATATACTTACTCTCT+TGG | 0.424725 | 4_4:-72486697 | None:intergenic |
| TTCTCTTCAAGAAATTGGCT+TGG | 0.425569 | 4_4:-72488809 | None:intergenic |
| AGACCCGCTGAGGTGAGCTT+TGG | 0.428693 | 4_4:+72488929 | Msa0701160:CDS |
| GCAGGGTGATCCGTGTCCAC+CGG | 0.430658 | 4_4:+72487084 | Msa0701160:intron |
| TCAAATGAAAGAAGAAGAAA+TGG | 0.432967 | 4_4:+72486581 | Msa0701160:CDS |
| GAGAAATGGAACCTAATTCA+TGG | 0.443905 | 4_4:-72488367 | None:intergenic |
| AGCAAGAAACTTGACGAGGC+TGG | 0.448557 | 4_4:+72487587 | Msa0701160:CDS |
| TTTCCAAAGCTCACCTCAGC+GGG | 0.450601 | 4_4:-72488932 | None:intergenic |
| GGACACATCTTCATCTTGAA+TGG | 0.461249 | 4_4:+72485057 | Msa0701160:five_prime_UTR |
| CAGGGTGATCCGTGTCCACC+GGG | 0.468752 | 4_4:+72487085 | Msa0701160:intron |
| ATAAAAGAGTGATGAAGATC+AGG | 0.470459 | 4_4:-72486650 | None:intergenic |
| ATGGGCTACATGGTGAGAAA+TGG | 0.471248 | 4_4:-72488381 | None:intergenic |
| AATGTTACCTTAATCCGAAA+CGG | 0.472630 | 4_4:-72489037 | None:intergenic |
| CAACATTTCAAGATGGCAAA+TGG | 0.480821 | 4_4:+72488422 | Msa0701160:CDS |
| CCTCGTCAAGTTTCTTGCTC+CGG | 0.482077 | 4_4:-72487583 | None:intergenic |
| TATCCTTAACTTGAAGCTGC+TGG | 0.484791 | 4_4:-72488754 | None:intergenic |
| ATTCAAAGCCCATCAATTCA+AGG | 0.485522 | 4_4:+72488534 | Msa0701160:CDS |
| CCTCGATTATTTCTCTTCCA+AGG | 0.489008 | 4_4:-72485035 | None:intergenic |
| ATAGTTTACCTTGAATTGAT+GGG | 0.489818 | 4_4:-72488542 | None:intergenic |
| GATCAAAGATGCCTAGGCTT+AGG | 0.490445 | 4_4:+72486621 | Msa0701160:CDS |
| ATGCATGCTGTTGAAAGGCT+TGG | 0.493618 | 4_4:+72486671 | Msa0701160:CDS |
| AATTCATTGCTCATGTAGCT+TGG | 0.505208 | 4_4:-72488677 | None:intergenic |
| AATTTCTTGAAGAGAAAAGA+TGG | 0.506639 | 4_4:+72488816 | Msa0701160:CDS |
| TCATGGGTTGATCTGTGTGT+TGG | 0.507129 | 4_4:-72488350 | None:intergenic |
| ACATGCTGAGGACACTTCAA+TGG | 0.509382 | 4_4:+72486367 | Msa0701160:CDS |
| CAAAGATGCCTAGGCTTAGG+TGG | 0.512420 | 4_4:+72486624 | Msa0701160:CDS |
| CAAACAAACGGCAACAATGA+TGG | 0.520591 | 4_4:+72489364 | Msa0701160:CDS |
| AGCTTCTTCATTCAAATCAA+AGG | 0.526882 | 4_4:-72486414 | None:intergenic |
| ATGAGAATGAGAGGAGTACT+GGG | 0.527704 | 4_4:+72486333 | Msa0701160:CDS |
| TTGAACTATTAAAATAGTTG+TGG | 0.532058 | 4_4:-72488997 | None:intergenic |
| TTGGAAACAACACAAGAAGC+AGG | 0.535242 | 4_4:+72488948 | Msa0701160:CDS |
| ATGAGAAACATGAGAATGAG+AGG | 0.550261 | 4_4:+72486324 | Msa0701160:CDS |
| AACAATGATGGCAAGAGTGA+TGG | 0.553546 | 4_4:+72489376 | Msa0701160:CDS |
| ATGTTAGATCAAAGATGCCT+AGG | 0.555843 | 4_4:+72486615 | Msa0701160:CDS |
| ATGTGAATGTGATAAGGATG+AGG | 0.556397 | 4_4:-72488507 | None:intergenic |
| ATGTGAATGTGAATGTGATA+AGG | 0.557968 | 4_4:-72488513 | None:intergenic |
| TTAGTAAAGGATGATGATGA+AGG | 0.558622 | 4_4:+72486527 | Msa0701160:CDS |
| CATGCTGTTGAAAGGCTTGG+AGG | 0.559982 | 4_4:+72486674 | Msa0701160:CDS |
| GATGAGGTATCATGGACTGA+TGG | 0.560341 | 4_4:-72488400 | None:intergenic |
| GAAATGTTGATGAGGTATCA+TGG | 0.573003 | 4_4:-72488408 | None:intergenic |
| TGTGGAAATTATAACTGTGC+TGG | 0.573367 | 4_4:-72488472 | None:intergenic |
| ATTGCTGAAAGACAAACAAT+GGG | 0.582280 | 4_4:+72489315 | Msa0701160:CDS |
| CATTGCTGAAAGACAAACAA+TGG | 0.583238 | 4_4:+72489314 | Msa0701160:CDS |
| AGAAATGGAACCTAATTCAT+GGG | 0.583302 | 4_4:-72488366 | None:intergenic |
| TTGTTAATGAATATGTCAGA+TGG | 0.583874 | 4_4:+72486299 | Msa0701160:exon |
| GGGTGATCCGTGTCCACCGG+GGG | 0.584092 | 4_4:+72487087 | Msa0701160:intron |
| CTGAGTTTAAGTCAAACAAA+CGG | 0.584680 | 4_4:+72489352 | Msa0701160:CDS |
| GCTGTTGATCTTTGAGTGGA+AGG | 0.585373 | 4_4:-72484936 | None:intergenic |
| TCATGGACTGATGGGCTACA+TGG | 0.586690 | 4_4:-72488391 | None:intergenic |
| TCAGGAGTCCACCTAAGCCT+AGG | 0.589432 | 4_4:-72486632 | None:intergenic |
| ACCTCATCAACATTTCAAGA+TGG | 0.592000 | 4_4:+72488415 | Msa0701160:CDS |
| ATGAGGGATGCAGGAGACTG+TGG | 0.594666 | 4_4:-72488490 | None:intergenic |
| CATTTCAAGATGGCAAATGG+TGG | 0.597539 | 4_4:+72488425 | Msa0701160:CDS |
| TGTGATCATGAATTAGTGAA+TGG | 0.597628 | 4_4:+72486482 | Msa0701160:CDS |
| TGTGAATGTGATAAGGATGA+GGG | 0.599304 | 4_4:-72488506 | None:intergenic |
| AACCTACAAACATTATCCCC+CGG | 0.605303 | 4_4:-72487103 | None:intergenic |
| AAACTTGACGAGGCTGGACA+AGG | 0.608837 | 4_4:+72487593 | Msa0701160:CDS |
| ATGAGGTATCATGGACTGAT+GGG | 0.611244 | 4_4:-72488399 | None:intergenic |
| TGATTGTTCATGATATCTAA+GGG | 0.612865 | 4_4:-72488842 | None:intergenic |
| TGATGCTGTTGATCTTTGAG+TGG | 0.614220 | 4_4:-72484940 | None:intergenic |
| TGGTCTCATAGGAGCAAGTG+TGG | 0.616525 | 4_4:-72488789 | None:intergenic |
| TGATGATGAGAAATTAGTAA+AGG | 0.628164 | 4_4:+72486514 | Msa0701160:CDS |
| GAAGAGTGAAGAACATGCTG+AGG | 0.635213 | 4_4:+72486355 | Msa0701160:CDS |
| GCCATCTTGAAATGTTGATG+AGG | 0.640047 | 4_4:-72488416 | None:intergenic |
| GTTTCCAAAGCTCACCTCAG+CGG | 0.640457 | 4_4:-72488933 | None:intergenic |
| CTTGGAAGAGAAATAATCGA+GGG | 0.648085 | 4_4:+72485036 | Msa0701160:five_prime_UTR |
| TGGAAACAACACAAGAAGCA+GGG | 0.655021 | 4_4:+72488949 | Msa0701160:CDS |
| CTTCAACTGATGAATGTGAG+AGG | 0.660411 | 4_4:+72486860 | Msa0701160:CDS |
| TGATCAAGATGTTAACAATG+AGG | 0.669481 | 4_4:+72486445 | Msa0701160:CDS |
| TGTTACCTTAATCCGAAACG+GGG | 0.678201 | 4_4:-72489035 | None:intergenic |
| CCTTGGAAGAGAAATAATCG+AGG | 0.681331 | 4_4:+72485035 | Msa0701160:five_prime_UTR |
| TAACAATGAGGAGAATGATG+AGG | 0.684647 | 4_4:+72486457 | Msa0701160:CDS |
| AACATCACTTAGACCCGCTG+AGG | 0.687013 | 4_4:+72488919 | Msa0701160:CDS |
| AGGGTGATCCGTGTCCACCG+GGG | 0.695098 | 4_4:+72487086 | Msa0701160:intron |
| TCAACAGCCATAAATACACA+AGG | 0.708092 | 4_4:+72488710 | Msa0701160:CDS |
| CCGGAGCAAGAAACTTGACG+AGG | 0.718472 | 4_4:+72487583 | Msa0701160:CDS |
| GTTACCTTAATCCGAAACGG+GGG | 0.718704 | 4_4:-72489034 | None:intergenic |
| TTGTTCATGATATCTAAGGG+AGG | 0.723510 | 4_4:-72488839 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATATTAAAATAAAA+GGG | + | chr4_4:72487019-72487038 | Msa0701160:intron | 0.0% |
| !! | TTCAAATTCTTTAAATATAT+AGG | + | chr4_4:72485832-72485851 | Msa0701160:intron | 10.0% |
| !!! | CTTTAAAACTTTTAAAATAT+AGG | - | chr4_4:72486139-72486158 | None:intergenic | 10.0% |
| !! | AAATATATTAAAATAAAAGG+GGG | + | chr4_4:72487021-72487040 | Msa0701160:intron | 10.0% |
| !!! | AGAATTTTTTTTTCATTATA+GGG | - | chr4_4:72487670-72487689 | None:intergenic | 10.0% |
| !!! | TAGAATTTTTTTTTCATTAT+AGG | - | chr4_4:72487671-72487690 | None:intergenic | 10.0% |
| !! | TATGATAACAAATATTAGAT+GGG | - | chr4_4:72485260-72485279 | None:intergenic | 15.0% |
| !! | ATATGATAACAAATATTAGA+TGG | - | chr4_4:72485261-72485280 | None:intergenic | 15.0% |
| !!! | CAATAAAGAAAAATTTTCTT+TGG | - | chr4_4:72485362-72485381 | None:intergenic | 15.0% |
| !! | GATATAAAGTTAGTAATTAA+AGG | + | chr4_4:72485535-72485554 | Msa0701160:intron | 15.0% |
| !! | TTAATAAGATTCATATTAGA+AGG | - | chr4_4:72486006-72486025 | None:intergenic | 15.0% |
| !! | AATTGTGAAATTGTTTAATT+TGG | + | chr4_4:72486763-72486782 | Msa0701160:intron | 15.0% |
| !! | AATATATTAAAATAAAAGGG+GGG | + | chr4_4:72487022-72487041 | Msa0701160:intron | 15.0% |
| !!! | TTTCCTTGATTTTTTTTTTT+TGG | + | chr4_4:72487452-72487471 | Msa0701160:intron | 15.0% |
| !!! | GTATTTCATAAATCATTTTA+TGG | + | chr4_4:72487535-72487554 | Msa0701160:intron | 15.0% |
| !! | ATATAACAGTGAAAAAAATA+TGG | - | chr4_4:72487939-72487958 | None:intergenic | 15.0% |
| !! | TCTAATTAAAAATTTGTACT+GGG | + | chr4_4:72488220-72488239 | Msa0701160:intron | 15.0% |
| !! | AATGTCAAAATAAACAAAAT+CGG | - | chr4_4:72488298-72488317 | None:intergenic | 15.0% |
| !!! | AAAGTTACATTTTTTTACTT+AGG | + | chr4_4:72488618-72488637 | Msa0701160:intron | 15.0% |
| !! | TGAGAAAATATATATATGAA+AGG | - | chr4_4:72489275-72489294 | None:intergenic | 15.0% |
| !!! | TTTTCATATTATTATTGACA+TGG | - | chr4_4:72489468-72489487 | None:intergenic | 15.0% |
| !! | TCAATATATATATATAGCCT+TGG | + | chr4_4:72485018-72485037 | Msa0701160:five_prime_UTR | 20.0% |
| !! | TATATATATACTTACTCTCT+TGG | - | chr4_4:72486700-72486719 | None:intergenic | 20.0% |
| !! | AACAATTTCACAATTATCTA+GGG | - | chr4_4:72486758-72486777 | None:intergenic | 20.0% |
| !! | AAACAATTTCACAATTATCT+AGG | - | chr4_4:72486759-72486778 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTTTCTCTCTAG+TGG | - | chr4_4:72487304-72487323 | None:intergenic | 20.0% |
| !! | ATGCAATAAATACAATAGAT+TGG | + | chr4_4:72487332-72487351 | Msa0701160:intron | 20.0% |
| !! | AATAAATACAATAGATTGGT+TGG | + | chr4_4:72487336-72487355 | Msa0701160:intron | 20.0% |
| !!! | ATAAATACAATAGATTGGTT+GGG | + | chr4_4:72487337-72487356 | Msa0701160:intron | 20.0% |
| !! | ATAGAAAAAATATGAAGTGT+TGG | + | chr4_4:72487380-72487399 | Msa0701160:intron | 20.0% |
| !! | TATATCAACACTTAATTTCA+AGG | - | chr4_4:72487514-72487533 | None:intergenic | 20.0% |
| !! | GATTTATAAGACAAAAAAAC+AGG | - | chr4_4:72487813-72487832 | None:intergenic | 20.0% |
| !! | CACTGTTATATAAAAACAAA+TGG | + | chr4_4:72487948-72487967 | Msa0701160:intron | 20.0% |
| !!! | GTCATCTATTTTAAAATTGA+TGG | + | chr4_4:72488102-72488121 | Msa0701160:intron | 20.0% |
| !! | TAGTAATTACATAAAAGAGT+AGG | + | chr4_4:72488197-72488216 | Msa0701160:intron | 20.0% |
| !! | GTCTAATTAAAAATTTGTAC+TGG | + | chr4_4:72488219-72488238 | Msa0701160:intron | 20.0% |
| !!! | AATCAAAGTATTACAATACA+AGG | + | chr4_4:72488250-72488269 | Msa0701160:intron | 20.0% |
| !!! | ATCAAAGTATTACAATACAA+GGG | + | chr4_4:72488251-72488270 | Msa0701160:intron | 20.0% |
| !!! | TTTATTTTTTTCCATTCAAG+TGG | + | chr4_4:72488591-72488610 | Msa0701160:intron | 20.0% |
| !!! | TGTAAATTTTTCTTCCAATA+TGG | - | chr4_4:72488869-72488888 | None:intergenic | 20.0% |
| !! | TTGAACTATTAAAATAGTTG+TGG | - | chr4_4:72489000-72489019 | None:intergenic | 20.0% |
| !! | TATATATGAAAGGTTAAGAA+AGG | - | chr4_4:72489265-72489284 | None:intergenic | 20.0% |
| ! | TGATCAAAATGAACACAAAA+GGG | - | chr4_4:72485184-72485203 | None:intergenic | 25.0% |
| ! | ATGATCAAAATGAACACAAA+AGG | - | chr4_4:72485185-72485204 | None:intergenic | 25.0% |
| ! | AAAATGAACACAAAAAGAAC+AGG | - | chr4_4:72485220-72485239 | None:intergenic | 25.0% |
| !! | TTTCTTTGGAAAAACAAGTT+AGG | - | chr4_4:72485348-72485367 | None:intergenic | 25.0% |
| ! | TCATATGATAAACCTGAATA+TGG | + | chr4_4:72485640-72485659 | Msa0701160:intron | 25.0% |
| !! | TTGCAATTTTATCCATATTC+AGG | - | chr4_4:72485655-72485674 | None:intergenic | 25.0% |
| ! | AAGTTTATTAATTAACACCC+TGG | + | chr4_4:72485700-72485719 | Msa0701160:intron | 25.0% |
| ! | TATGCAAATTAATGAAACCA+GGG | - | chr4_4:72485720-72485739 | None:intergenic | 25.0% |
| ! | ATATGCAAATTAATGAAACC+AGG | - | chr4_4:72485721-72485740 | None:intergenic | 25.0% |
| ! | AGAAAGGAATTAACTGTAAA+GGG | - | chr4_4:72485753-72485772 | None:intergenic | 25.0% |
| ! | TATTCAGCTACTTATTCATT+AGG | + | chr4_4:72485784-72485803 | Msa0701160:intron | 25.0% |
| ! | TGAGAAATAATTAATGAGAG+AGG | - | chr4_4:72486046-72486065 | None:intergenic | 25.0% |
| ! | TTGTTAATGAATATGTCAGA+TGG | + | chr4_4:72486299-72486318 | Msa0701160:exon | 25.0% |
| !! | TGATGATGAGAAATTAGTAA+AGG | + | chr4_4:72486514-72486533 | Msa0701160:CDS | 25.0% |
| ! | TCAAATGAAAGAAGAAGAAA+TGG | + | chr4_4:72486581-72486600 | Msa0701160:CDS | 25.0% |
| ! | GTTGTGTTCATTATTAATGT+TGG | + | chr4_4:72486805-72486824 | Msa0701160:intron | 25.0% |
| ! | GGTATATAAGACAAAATTTG+AGG | + | chr4_4:72486916-72486935 | Msa0701160:intron | 25.0% |
| !! | AGATCAATTAATTTTTCTGC+AGG | + | chr4_4:72487066-72487085 | Msa0701160:intron | 25.0% |
| !! | GATCAATTAATTTTTCTGCA+GGG | + | chr4_4:72487067-72487086 | Msa0701160:intron | 25.0% |
| ! | AAATACCGAATGATTTATCT+TGG | + | chr4_4:72487229-72487248 | Msa0701160:intron | 25.0% |
| ! | CAATTCCAAGATAAATCATT+CGG | - | chr4_4:72487237-72487256 | None:intergenic | 25.0% |
| ! | TCTAGTGGTATATTATTCTT+TGG | - | chr4_4:72487289-72487308 | None:intergenic | 25.0% |
| !! | TAAATACAATAGATTGGTTG+GGG | + | chr4_4:72487338-72487357 | Msa0701160:intron | 25.0% |
| ! | CCACCAAAAAAAAAAAATCA+AGG | - | chr4_4:72487458-72487477 | None:intergenic | 25.0% |
| !!! | CCTTGATTTTTTTTTTTTGG+TGG | + | chr4_4:72487455-72487474 | Msa0701160:intron | 25.0% |
| !!! | TTTTTTTTTTTTGGTGGTGA+TGG | + | chr4_4:72487461-72487480 | Msa0701160:intron | 25.0% |
| !! | AATTTTCATTTCAGATGTAC+CGG | + | chr4_4:72487564-72487583 | Msa0701160:intron | 25.0% |
| ! | AAAGAGAAAGAGAAAAAGTA+TGG | - | chr4_4:72487729-72487748 | None:intergenic | 25.0% |
| !! | TTCAAATAAGTGACATCTTT+TGG | + | chr4_4:72487882-72487901 | Msa0701160:intron | 25.0% |
| ! | AAGTAAGTATCATTAGAGTT+GGG | - | chr4_4:72488149-72488168 | None:intergenic | 25.0% |
| ! | ATAGTTTACCTTGAATTGAT+GGG | - | chr4_4:72488545-72488564 | None:intergenic | 25.0% |
| ! | TATAGTTTACCTTGAATTGA+TGG | - | chr4_4:72488546-72488565 | None:intergenic | 25.0% |
| !! | ATCTTTTCTCTTCAAGAAAT+TGG | - | chr4_4:72488817-72488836 | None:intergenic | 25.0% |
| ! | AATTTCTTGAAGAGAAAAGA+TGG | + | chr4_4:72488816-72488835 | Msa0701160:CDS | 25.0% |
| ! | TGATTGTTCATGATATCTAA+GGG | - | chr4_4:72488845-72488864 | None:intergenic | 25.0% |
| ! | ATGATTGTTCATGATATCTA+AGG | - | chr4_4:72488846-72488865 | None:intergenic | 25.0% |
| ! | CATTAATAACTATATGCTAC+TGG | + | chr4_4:72489056-72489075 | Msa0701160:intron | 25.0% |
| ! | GTAAACTTGATAGGTAGTTT+TGG | - | chr4_4:72484912-72484931 | None:intergenic | 30.0% |
| GAAGGAAATGTAAACTTGAT+AGG | - | chr4_4:72484921-72484940 | None:intergenic | 30.0% | |
| AATGAACACAAAAGGGATAT+TGG | - | chr4_4:72485177-72485196 | None:intergenic | 30.0% | |
| AACAAGTTAGGAGATTGATT+AGG | - | chr4_4:72485336-72485355 | None:intergenic | 30.0% | |
| AAAACACATCTTCCTTTAGA+GGG | - | chr4_4:72485407-72485426 | None:intergenic | 30.0% | |
| GAGAAAGGAATTAACTGTAA+AGG | - | chr4_4:72485754-72485773 | None:intergenic | 30.0% | |
| GAATAATCAGAAAAGGAGAA+AGG | - | chr4_4:72485769-72485788 | None:intergenic | 30.0% | |
| AGTAGCTGAATAATCAGAAA+AGG | - | chr4_4:72485776-72485795 | None:intergenic | 30.0% | |
| TAGTAGAGTATAGTACTAGT+AGG | - | chr4_4:72485979-72485998 | None:intergenic | 30.0% | |
| GAATTAAAAGTGATGAGAAC+AGG | - | chr4_4:72486187-72486206 | None:intergenic | 30.0% | |
| AGCTTCTTCATTCAAATCAA+AGG | - | chr4_4:72486417-72486436 | None:intergenic | 30.0% | |
| TGATCAAGATGTTAACAATG+AGG | + | chr4_4:72486445-72486464 | Msa0701160:CDS | 30.0% | |
| TGTGATCATGAATTAGTGAA+TGG | + | chr4_4:72486482-72486501 | Msa0701160:CDS | 30.0% | |
| ! | TTAGTAAAGGATGATGATGA+AGG | + | chr4_4:72486527-72486546 | Msa0701160:CDS | 30.0% |
| AGTTCAACAAAAAGAAGTAG+TGG | + | chr4_4:72486557-72486576 | Msa0701160:CDS | 30.0% | |
| ATAAAAGAGTGATGAAGATC+AGG | - | chr4_4:72486653-72486672 | None:intergenic | 30.0% | |
| GTGTTCATTATTAATGTTGG+TGG | + | chr4_4:72486808-72486827 | Msa0701160:intron | 30.0% | |
| ACGTGAAACAAAAATATCAG+TGG | - | chr4_4:72487000-72487019 | None:intergenic | 30.0% | |
| CGAATGATTTATCTTGGAAT+TGG | + | chr4_4:72487235-72487254 | Msa0701160:intron | 30.0% | |
| GGCAGACAAAAAAAAATTCA+AGG | - | chr4_4:72487649-72487668 | None:intergenic | 30.0% | |
| !! | TGGACTTTCTTTTTCATGTA+GGG | - | chr4_4:72487700-72487719 | None:intergenic | 30.0% |
| !! | TTGGACTTTCTTTTTCATGT+AGG | - | chr4_4:72487701-72487720 | None:intergenic | 30.0% |
| !! | GAGAAAAAGTATGGTAGTTT+TGG | - | chr4_4:72487720-72487739 | None:intergenic | 30.0% |
| AAATGTGCACATGTGTAAAA+CGG | + | chr4_4:72488071-72488090 | Msa0701160:intron | 30.0% | |
| GAAGTAAGTATCATTAGAGT+TGG | - | chr4_4:72488150-72488169 | None:intergenic | 30.0% | |
| TATTACAATACAAGGGCTTA+GGG | + | chr4_4:72488258-72488277 | Msa0701160:intron | 30.0% | |
| AGAAATGGAACCTAATTCAT+GGG | - | chr4_4:72488369-72488388 | None:intergenic | 30.0% | |
| ATGTGAATGTGAATGTGATA+AGG | - | chr4_4:72488516-72488535 | None:intergenic | 30.0% | |
| ! | TAACTTTAATGCCACTTGAA+TGG | - | chr4_4:72488605-72488624 | None:intergenic | 30.0% |
| GATGATTTAAGTACCATTCT+TGG | - | chr4_4:72488646-72488665 | None:intergenic | 30.0% | |
| GGTACTTAAATCATCAATCT+TGG | + | chr4_4:72488651-72488670 | Msa0701160:CDS | 30.0% | |
| TGATCTTCCTTGTGTATTTA+TGG | - | chr4_4:72488720-72488739 | None:intergenic | 30.0% | |
| TCATGAACAATCATCCATAT+TGG | + | chr4_4:72488852-72488871 | Msa0701160:CDS | 30.0% | |
| AATGTTACCTTAATCCGAAA+CGG | - | chr4_4:72489040-72489059 | None:intergenic | 30.0% | |
| TGGAACAAATAGTATAGTGA+CGG | + | chr4_4:72489076-72489095 | Msa0701160:intron | 30.0% | |
| ATTAGCAAAAGAAACGTAGA+AGG | - | chr4_4:72489190-72489209 | None:intergenic | 30.0% | |
| ATTGCTGAAAGACAAACAAT+GGG | + | chr4_4:72489315-72489334 | Msa0701160:CDS | 30.0% | |
| CTGAGTTTAAGTCAAACAAA+CGG | + | chr4_4:72489352-72489371 | Msa0701160:CDS | 30.0% | |
| !!! | CTTGATAGGTAGTTTTGGTT+TGG | - | chr4_4:72484907-72484926 | None:intergenic | 35.0% |
| CTTGGAAGAGAAATAATCGA+GGG | + | chr4_4:72485036-72485055 | Msa0701160:five_prime_UTR | 35.0% | |
| ACATCTTCATCTTGAATGGT+TGG | + | chr4_4:72485061-72485080 | Msa0701160:intron | 35.0% | |
| AACCATGAAGATAGAGATGA+GGG | - | chr4_4:72485151-72485170 | None:intergenic | 35.0% | |
| GAAAACACATCTTCCTTTAG+AGG | - | chr4_4:72485408-72485427 | None:intergenic | 35.0% | |
| TTAGTGACAGATCAACACAT+TGG | - | chr4_4:72485583-72485602 | None:intergenic | 35.0% | |
| CCTGTGTAAGATACGTTTAT+TGG | - | chr4_4:72485617-72485636 | None:intergenic | 35.0% | |
| CCAATAAACGTATCTTACAC+AGG | + | chr4_4:72485614-72485633 | Msa0701160:intron | 35.0% | |
| AAGGAATTAACTGTAAAGGG+TGG | - | chr4_4:72485750-72485769 | None:intergenic | 35.0% | |
| CTGTCAGAAATTTGATTCAC+AGG | + | chr4_4:72485875-72485894 | Msa0701160:intron | 35.0% | |
| AGAGAATAGAGTAGAGATGT+TGG | + | chr4_4:72485908-72485927 | Msa0701160:intron | 35.0% | |
| ! | ATAGAGTAGAGATGTTGGTT+TGG | + | chr4_4:72485913-72485932 | Msa0701160:intron | 35.0% |
| CTAGAATGGCATGGTAATAA+AGG | - | chr4_4:72486106-72486125 | None:intergenic | 35.0% | |
| !! | TAGGTACTGAAATGCTAGAA+TGG | - | chr4_4:72486120-72486139 | None:intergenic | 35.0% |
| ATGAGAAACATGAGAATGAG+AGG | + | chr4_4:72486324-72486343 | Msa0701160:CDS | 35.0% | |
| TAACAATGAGGAGAATGATG+AGG | + | chr4_4:72486457-72486476 | Msa0701160:CDS | 35.0% | |
| ATGTTAGATCAAAGATGCCT+AGG | + | chr4_4:72486615-72486634 | Msa0701160:CDS | 35.0% | |
| ! | CTTTTATGCATGCTGTTGAA+AGG | + | chr4_4:72486666-72486685 | Msa0701160:CDS | 35.0% |
| ! | ATCAGTTGAAGCACCAATTT+GGG | - | chr4_4:72486851-72486870 | None:intergenic | 35.0% |
| !!! | TGGTGGTGATGGTATTTTTT+TGG | + | chr4_4:72487472-72487491 | Msa0701160:intron | 35.0% |
| ! | CTTCCCAGCAATTTCATTTT+GGG | + | chr4_4:72487779-72487798 | Msa0701160:intron | 35.0% |
| ! | TTCCCAGCAATTTCATTTTG+GGG | + | chr4_4:72487780-72487799 | Msa0701160:intron | 35.0% |
| GTATTACAATACAAGGGCTT+AGG | + | chr4_4:72488257-72488276 | Msa0701160:intron | 35.0% | |
| GAGAAATGGAACCTAATTCA+TGG | - | chr4_4:72488370-72488389 | None:intergenic | 35.0% | |
| ! | GAAATGTTGATGAGGTATCA+TGG | - | chr4_4:72488411-72488430 | None:intergenic | 35.0% |
| ACCTCATCAACATTTCAAGA+TGG | + | chr4_4:72488415-72488434 | Msa0701160:CDS | 35.0% | |
| CAACATTTCAAGATGGCAAA+TGG | + | chr4_4:72488422-72488441 | Msa0701160:CDS | 35.0% | |
| TGTGGAAATTATAACTGTGC+TGG | - | chr4_4:72488475-72488494 | None:intergenic | 35.0% | |
| TGTGAATGTGATAAGGATGA+GGG | - | chr4_4:72488509-72488528 | None:intergenic | 35.0% | |
| ATGTGAATGTGATAAGGATG+AGG | - | chr4_4:72488510-72488529 | None:intergenic | 35.0% | |
| ATTCAAAGCCCATCAATTCA+AGG | + | chr4_4:72488534-72488553 | Msa0701160:CDS | 35.0% | |
| ! | TTTTACTTAGGCACCAAGAA+TGG | + | chr4_4:72488630-72488649 | Msa0701160:intron | 35.0% |
| AATTCATTGCTCATGTAGCT+TGG | - | chr4_4:72488680-72488699 | None:intergenic | 35.0% | |
| TGTGTATTTATGGCTGTTGA+TGG | - | chr4_4:72488710-72488729 | None:intergenic | 35.0% | |
| TCAACAGCCATAAATACACA+AGG | + | chr4_4:72488710-72488729 | Msa0701160:CDS | 35.0% | |
| TTCTCTTCAAGAAATTGGCT+TGG | - | chr4_4:72488812-72488831 | None:intergenic | 35.0% | |
| TTGTTCATGATATCTAAGGG+AGG | - | chr4_4:72488842-72488861 | None:intergenic | 35.0% | |
| ATGTTACCTTAATCCGAAAC+GGG | - | chr4_4:72489039-72489058 | None:intergenic | 35.0% | |
| TAGTGACAAGAGAATTAGAG+AGG | - | chr4_4:72489128-72489147 | None:intergenic | 35.0% | |
| CATTGCTGAAAGACAAACAA+TGG | + | chr4_4:72489314-72489333 | Msa0701160:CDS | 35.0% | |
| CTTAAACTCAGTTGCAAATC+AGG | - | chr4_4:72489343-72489362 | None:intergenic | 35.0% | |
| TGATGCTGTTGATCTTTGAG+TGG | - | chr4_4:72484943-72484962 | None:intergenic | 40.0% | |
| ! | CCTCGATTATTTCTCTTCCA+AGG | - | chr4_4:72485038-72485057 | None:intergenic | 40.0% |
| CCTTGGAAGAGAAATAATCG+AGG | + | chr4_4:72485035-72485054 | Msa0701160:five_prime_UTR | 40.0% | |
| GGACACATCTTCATCTTGAA+TGG | + | chr4_4:72485057-72485076 | Msa0701160:five_prime_UTR | 40.0% | |
| ACCATGAAGATAGAGATGAG+GGG | - | chr4_4:72485150-72485169 | None:intergenic | 40.0% | |
| GAACCATGAAGATAGAGATG+AGG | - | chr4_4:72485152-72485171 | None:intergenic | 40.0% | |
| GAACACAAAAGGGATATTGG+TGG | - | chr4_4:72485174-72485193 | None:intergenic | 40.0% | |
| TTAGAGGGATGTACTTCTGA+GGG | - | chr4_4:72485392-72485411 | None:intergenic | 40.0% | |
| TTTAGAGGGATGTACTTCTG+AGG | - | chr4_4:72485393-72485412 | None:intergenic | 40.0% | |
| ! | TCAGAAGTACATCCCTCTAA+AGG | + | chr4_4:72485392-72485411 | Msa0701160:intron | 40.0% |
| GAATTAACTGTAAAGGGTGG+AGG | - | chr4_4:72485747-72485766 | None:intergenic | 40.0% | |
| ACTGAAATGCTAGAATGGCA+TGG | - | chr4_4:72486115-72486134 | None:intergenic | 40.0% | |
| !! | ATGAGAATGAGAGGAGTACT+GGG | + | chr4_4:72486333-72486352 | Msa0701160:CDS | 40.0% |
| ! | CATCAGTTGAAGCACCAATT+TGG | - | chr4_4:72486852-72486871 | None:intergenic | 40.0% |
| CTTCAACTGATGAATGTGAG+AGG | + | chr4_4:72486860-72486879 | Msa0701160:CDS | 40.0% | |
| AACCTACAAACATTATCCCC+CGG | - | chr4_4:72487106-72487125 | None:intergenic | 40.0% | |
| GGCGTGTCTAACAAGATTTA+GGG | - | chr4_4:72487628-72487647 | None:intergenic | 40.0% | |
| AGGCGTGTCTAACAAGATTT+AGG | - | chr4_4:72487629-72487648 | None:intergenic | 40.0% | |
| CCAAAATGAAATTGCTGGGA+AGG | - | chr4_4:72487781-72487800 | None:intergenic | 40.0% | |
| ! | CCTTCCCAGCAATTTCATTT+TGG | + | chr4_4:72487778-72487797 | Msa0701160:intron | 40.0% |
| ! | TCCCAGCAATTTCATTTTGG+GGG | + | chr4_4:72487781-72487800 | Msa0701160:intron | 40.0% |
| TATTTGAAGAGTGAGAGCAG+CGG | - | chr4_4:72487870-72487889 | None:intergenic | 40.0% | |
| CACAGATCAACCCATGAATT+AGG | + | chr4_4:72488356-72488375 | Msa0701160:CDS | 40.0% | |
| ! | ATGAGGTATCATGGACTGAT+GGG | - | chr4_4:72488402-72488421 | None:intergenic | 40.0% |
| GCCATCTTGAAATGTTGATG+AGG | - | chr4_4:72488419-72488438 | None:intergenic | 40.0% | |
| CATTTCAAGATGGCAAATGG+TGG | + | chr4_4:72488425-72488444 | Msa0701160:CDS | 40.0% | |
| !! | AAGCTGCTGGTTCAAAGTTA+TGG | - | chr4_4:72488744-72488763 | None:intergenic | 40.0% |
| ! | TATCCTTAACTTGAAGCTGC+TGG | - | chr4_4:72488757-72488776 | None:intergenic | 40.0% |
| !! | AGAAATTGGCTTGGTCTCAT+AGG | - | chr4_4:72488803-72488822 | None:intergenic | 40.0% |
| TTGGAAACAACACAAGAAGC+AGG | + | chr4_4:72488948-72488967 | Msa0701160:CDS | 40.0% | |
| TGGAAACAACACAAGAAGCA+GGG | + | chr4_4:72488949-72488968 | Msa0701160:CDS | 40.0% | |
| TTGAATTTGATCCCCCGTTT+CGG | + | chr4_4:72489023-72489042 | Msa0701160:CDS | 40.0% | |
| TGTTACCTTAATCCGAAACG+GGG | - | chr4_4:72489038-72489057 | None:intergenic | 40.0% | |
| CAAACAAACGGCAACAATGA+TGG | + | chr4_4:72489364-72489383 | Msa0701160:CDS | 40.0% | |
| AACAATGATGGCAAGAGTGA+TGG | + | chr4_4:72489376-72489395 | Msa0701160:CDS | 40.0% | |
| !! | GAGTTTCGTGTCGATTTCTT+TGG | - | chr4_4:72489413-72489432 | None:intergenic | 40.0% |
| GCTGTTGATCTTTGAGTGGA+AGG | - | chr4_4:72484939-72484958 | None:intergenic | 45.0% | |
| ACCCCTCATCTCTATCTTCA+TGG | + | chr4_4:72485146-72485165 | Msa0701160:intron | 45.0% | |
| ! | CATGAGAATGAGAGGAGTAC+TGG | + | chr4_4:72486332-72486351 | Msa0701160:CDS | 45.0% |
| GAAGAGTGAAGAACATGCTG+AGG | + | chr4_4:72486355-72486374 | Msa0701160:CDS | 45.0% | |
| ACATGCTGAGGACACTTCAA+TGG | + | chr4_4:72486367-72486386 | Msa0701160:CDS | 45.0% | |
| GATCAAAGATGCCTAGGCTT+AGG | + | chr4_4:72486621-72486640 | Msa0701160:CDS | 45.0% | |
| ATGCATGCTGTTGAAAGGCT+TGG | + | chr4_4:72486671-72486690 | Msa0701160:CDS | 45.0% | |
| !! | TTAATGTTGGTGGTGCATGC+AGG | + | chr4_4:72486818-72486837 | Msa0701160:intron | 45.0% |
| TCATGTCAAGAGTCACTTGC+AGG | + | chr4_4:72486895-72486914 | Msa0701160:CDS | 45.0% | |
| CTCTTTATTCCCCGCAAAAC+AGG | + | chr4_4:72487743-72487762 | Msa0701160:intron | 45.0% | |
| TATTCCCCGCAAAACAGGTT+TGG | + | chr4_4:72487748-72487767 | Msa0701160:intron | 45.0% | |
| ATTCCCCGCAAAACAGGTTT+GGG | + | chr4_4:72487749-72487768 | Msa0701160:intron | 45.0% | |
| CCCCCCAAAATGAAATTGCT+GGG | - | chr4_4:72487785-72487804 | None:intergenic | 45.0% | |
| ! | CCCAGCAATTTCATTTTGGG+GGG | + | chr4_4:72487782-72487801 | Msa0701160:intron | 45.0% |
| TCCCCCCAAAATGAAATTGC+TGG | - | chr4_4:72487786-72487805 | None:intergenic | 45.0% | |
| !! | GCAATTTCATTTTGGGGGGA+AGG | + | chr4_4:72487786-72487805 | Msa0701160:intron | 45.0% |
| !! | TCATGGGTTGATCTGTGTGT+TGG | - | chr4_4:72488353-72488372 | None:intergenic | 45.0% |
| ! | ATGGGCTACATGGTGAGAAA+TGG | - | chr4_4:72488384-72488403 | None:intergenic | 45.0% |
| ! | GATGAGGTATCATGGACTGA+TGG | - | chr4_4:72488403-72488422 | None:intergenic | 45.0% |
| ! | GAACCAGCAGCTTCAAGTTA+AGG | + | chr4_4:72488751-72488770 | Msa0701160:CDS | 45.0% |
| GTTACCTTAATCCGAAACGG+GGG | - | chr4_4:72489037-72489056 | None:intergenic | 45.0% | |
| !! | GTAAAATATATTAAAATAAA+AGG | + | chr4_4:72487018-72487037 | Msa0701160:intron | 5.0% |
| !! | AAAATATATTAAAATAAAAG+GGG | + | chr4_4:72487020-72487039 | Msa0701160:intron | 5.0% |
| !!! | ATTTTTTTTATTGATTAATT+TGG | - | chr4_4:72487213-72487232 | None:intergenic | 5.0% |
| CAAAGATGCCTAGGCTTAGG+TGG | + | chr4_4:72486624-72486643 | Msa0701160:CDS | 50.0% | |
| CATGCTGTTGAAAGGCTTGG+AGG | + | chr4_4:72486674-72486693 | Msa0701160:CDS | 50.0% | |
| TGCAGGAGCAACACCCAAAT+TGG | + | chr4_4:72486835-72486854 | Msa0701160:intron | 50.0% | |
| CTACAAACATTATCCCCCGG+TGG | - | chr4_4:72487103-72487122 | None:intergenic | 50.0% | |
| CACCGGGGGATAATGTTTGT+AGG | + | chr4_4:72487101-72487120 | Msa0701160:intron | 50.0% | |
| CCTCGTCAAGTTTCTTGCTC+CGG | - | chr4_4:72487586-72487605 | None:intergenic | 50.0% | |
| AGCAAGAAACTTGACGAGGC+TGG | + | chr4_4:72487587-72487606 | Msa0701160:CDS | 50.0% | |
| AAACTTGACGAGGCTGGACA+AGG | + | chr4_4:72487593-72487612 | Msa0701160:CDS | 50.0% | |
| TTCCCCGCAAAACAGGTTTG+GGG | + | chr4_4:72487750-72487769 | Msa0701160:intron | 50.0% | |
| !! | TCATGGACTGATGGGCTACA+TGG | - | chr4_4:72488394-72488413 | None:intergenic | 50.0% |
| GTGATAAGGATGAGGGATGC+AGG | - | chr4_4:72488502-72488521 | None:intergenic | 50.0% | |
| TGGTCTCATAGGAGCAAGTG+TGG | - | chr4_4:72488792-72488811 | None:intergenic | 50.0% | |
| AACATCACTTAGACCCGCTG+AGG | + | chr4_4:72488919-72488938 | Msa0701160:CDS | 50.0% | |
| TTTCCAAAGCTCACCTCAGC+GGG | - | chr4_4:72488935-72488954 | None:intergenic | 50.0% | |
| GTTTCCAAAGCTCACCTCAG+CGG | - | chr4_4:72488936-72488955 | None:intergenic | 50.0% | |
| TGATCCCCCGTTTCGGATTA+AGG | + | chr4_4:72489030-72489049 | Msa0701160:CDS | 50.0% | |
| TCAGGAGTCCACCTAAGCCT+AGG | - | chr4_4:72486635-72486654 | None:intergenic | 55.0% | |
| ACATTATCCCCCGGTGGACA+CGG | - | chr4_4:72487097-72487116 | None:intergenic | 55.0% | |
| CCGGAGCAAGAAACTTGACG+AGG | + | chr4_4:72487583-72487602 | Msa0701160:CDS | 55.0% | |
| TGACGAGGCTGGACAAGGTA+AGG | + | chr4_4:72487598-72487617 | Msa0701160:intron | 55.0% | |
| TCCCCGCAAAACAGGTTTGG+GGG | + | chr4_4:72487751-72487770 | Msa0701160:intron | 55.0% | |
| ! | ACCCCCCAAACCTGTTTTGC+GGG | - | chr4_4:72487756-72487775 | None:intergenic | 55.0% |
| ! | CACCCCCCAAACCTGTTTTG+CGG | - | chr4_4:72487757-72487776 | None:intergenic | 55.0% |
| ATGAGGGATGCAGGAGACTG+TGG | - | chr4_4:72488493-72488512 | None:intergenic | 55.0% | |
| ! | CCCCCCAAACCTGTTTTGCG+GGG | - | chr4_4:72487755-72487774 | None:intergenic | 60.0% |
| CCCCGCAAAACAGGTTTGGG+GGG | + | chr4_4:72487752-72487771 | Msa0701160:intron | 60.0% | |
| AGACCCGCTGAGGTGAGCTT+TGG | + | chr4_4:72488929-72488948 | Msa0701160:CDS | 60.0% | |
| GCAGGGTGATCCGTGTCCAC+CGG | + | chr4_4:72487084-72487103 | Msa0701160:intron | 65.0% | |
| CAGGGTGATCCGTGTCCACC+GGG | + | chr4_4:72487085-72487104 | Msa0701160:intron | 65.0% | |
| AGGGTGATCCGTGTCCACCG+GGG | + | chr4_4:72487086-72487105 | Msa0701160:intron | 65.0% | |
| GGGTGATCCGTGTCCACCGG+GGG | + | chr4_4:72487087-72487106 | Msa0701160:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72484894 | 72489491 | 72484894 | ID=Msa0701160;Name=Msa0701160 |
| chr4_4 | mRNA | 72484894 | 72489491 | 72484894 | ID=Msa0701160-mRNA-1;Parent=Msa0701160;Name=Msa0701160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=234|0.71|0.87|0.87|0.85|0.75|8|47|436 |
| chr4_4 | exon | 72484894 | 72485078 | 72484894 | ID=Msa0701160-mRNA-1:exon:22126;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72486256 | 72486704 | 72486256 | ID=Msa0701160-mRNA-1:exon:22127;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72486840 | 72486916 | 72486840 | ID=Msa0701160-mRNA-1:exon:22128;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72487088 | 72487114 | 72487088 | ID=Msa0701160-mRNA-1:exon:22129;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72487578 | 72487614 | 72487578 | ID=Msa0701160-mRNA-1:exon:22130;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72488342 | 72488555 | 72488342 | ID=Msa0701160-mRNA-1:exon:22131;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72488640 | 72489051 | 72488640 | ID=Msa0701160-mRNA-1:exon:22132;Parent=Msa0701160-mRNA-1 |
| chr4_4 | exon | 72489301 | 72489491 | 72489301 | ID=Msa0701160-mRNA-1:exon:22133;Parent=Msa0701160-mRNA-1 |
| chr4_4 | five_prime_UTR | 72484894 | 72485078 | 72484894 | ID=Msa0701160-mRNA-1:five_prime_utr;Parent=Msa0701160-mRNA-1 |
| chr4_4 | five_prime_UTR | 72486256 | 72486304 | 72486256 | ID=Msa0701160-mRNA-1:five_prime_utr;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72486305 | 72486704 | 72486305 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72486840 | 72486916 | 72486840 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72487088 | 72487114 | 72487088 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72487578 | 72487614 | 72487578 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72488342 | 72488555 | 72488342 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72488640 | 72489051 | 72488640 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | CDS | 72489301 | 72489444 | 72489301 | ID=Msa0701160-mRNA-1:cds;Parent=Msa0701160-mRNA-1 |
| chr4_4 | three_prime_UTR | 72489445 | 72489491 | 72489445 | ID=Msa0701160-mRNA-1:three_prime_utr;Parent=Msa0701160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
