Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618350 | XP_003629964.1 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618350 | G7L8V0 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618350 | Msa0702750 | 0.951853 | 8.477539e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618350 | MtrunA17_Chr8g0380671 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 637 |
| Msa0618350 | MtrunA17_Chr2g0277641 | 66.458 | 319 | 83 | 7 | 1 | 314 | 2 | 301 | 1.56e-132 | 379 |
| Msa0618350 | MtrunA17_Chr3g0115301 | 56.656 | 323 | 130 | 3 | 7 | 320 | 4 | 325 | 1.76e-126 | 364 |
| Msa0618350 | MtrunA17_Chr5g0424821 | 52.244 | 312 | 141 | 3 | 14 | 320 | 19 | 327 | 2.11e-113 | 331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618350 | AT1G22030.1 | 46.269 | 335 | 156 | 7 | 5 | 320 | 4 | 333 | 1.54e-91 | 276 |
| Msa0618350 | AT1G77855.1 | 42.424 | 330 | 160 | 6 | 5 | 320 | 4 | 317 | 1.22e-81 | 250 |
Find 63 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTCAAATCTTCCATTTC+TGG | 0.131935 | 4_2:-69282252 | Msa0618350:CDS |
| TGTGGGGCTGAAAATCTAAT+AGG | 0.285057 | 4_2:-69281060 | Msa0618350:CDS |
| TCATTCTCAGTTAACACTTT+TGG | 0.294264 | 4_2:-69282358 | Msa0618350:CDS |
| TTGATTCTAAAGACATGTTC+TGG | 0.316353 | 4_2:+69281454 | None:intergenic |
| TGAAGGAAGGAAGAAGCTTT+TGG | 0.324823 | 4_2:-69281007 | Msa0618350:CDS |
| ATTTGTCAAAGGGAGATTAT+AGG | 0.349709 | 4_2:-69281540 | Msa0618350:CDS |
| TGGATGAAAGCTCAAGGCTT+TGG | 0.359827 | 4_2:-69282287 | Msa0618350:CDS |
| CAAAACCTTTGTTTACCAAT+TGG | 0.375448 | 4_2:-69282333 | Msa0618350:CDS |
| CTCTAATATTGCTACCTCAT+TGG | 0.382485 | 4_2:-69282205 | Msa0618350:CDS |
| GTTTACCAATTGGAGGGAAA+TGG | 0.389799 | 4_2:-69282323 | Msa0618350:CDS |
| ATAGTTCTCAATTCCAGAAA+TGG | 0.392682 | 4_2:+69282239 | None:intergenic |
| GGATGAAAGCTCAAGGCTTT+GGG | 0.404488 | 4_2:-69282286 | Msa0618350:CDS |
| GAGAAGTTACAAAGTTGCTT+TGG | 0.412171 | 4_2:-69281093 | Msa0618350:CDS |
| TATGTGGTGTTGCATATTGT+TGG | 0.414157 | 4_2:-69281353 | Msa0618350:CDS |
| GACTCCAGAGGTTTCACATC+AGG | 0.418966 | 4_2:-69282166 | Msa0618350:intron |
| GGAGGAATTGAAGGTGGAGT+TGG | 0.433591 | 4_2:-69281163 | Msa0618350:CDS |
| TCCAACCATTTCCCTCCAAT+TGG | 0.434345 | 4_2:+69282318 | None:intergenic |
| GTGGGGCTGAAAATCTAATA+GGG | 0.440555 | 4_2:-69281059 | Msa0618350:CDS |
| ACAAACTCTTCTTCTATCAA+TGG | 0.457789 | 4_2:-69282495 | Msa0618350:CDS |
| TCAAGGTTATGAGGGGAACT+TGG | 0.470031 | 4_2:-69281310 | Msa0618350:CDS |
| TTGATGAAATTGTTGAAGGA+AGG | 0.475480 | 4_2:-69281020 | Msa0618350:CDS |
| AGCAATGAACATTTGTCAAA+GGG | 0.476331 | 4_2:-69281550 | Msa0618350:CDS |
| GGTTGCTATGGAGGAATTGA+AGG | 0.490202 | 4_2:-69281172 | Msa0618350:CDS |
| GCAAGATTGCAGCATAAAGT+TGG | 0.492188 | 4_2:-69281258 | Msa0618350:CDS |
| AACCTTTGTTTACCAATTGG+AGG | 0.495754 | 4_2:-69282330 | Msa0618350:CDS |
| CTTTGAATTTCAACAAGCAA+AGG | 0.496259 | 4_2:-69281193 | Msa0618350:CDS |
| GAACATTGAGTCCTTGAGTA+AGG | 0.496597 | 4_2:+69282460 | None:intergenic |
| ATTGAGAACTATTCTTCAGC+TGG | 0.496650 | 4_2:-69282228 | Msa0618350:CDS |
| TCAAAGGGAGATTATAGGAA+TGG | 0.499787 | 4_2:-69281535 | Msa0618350:CDS |
| GTCAATTCAATTCATTTCTG+AGG | 0.508039 | 4_2:-69282403 | Msa0618350:CDS |
| TTCTTTGATGAAATTGTTGA+AGG | 0.510188 | 4_2:-69281024 | Msa0618350:CDS |
| AATATTGCTACCTCATTGGA+TGG | 0.514160 | 4_2:-69282201 | Msa0618350:CDS |
| TTCTATACCTTCCTTACTCA+AGG | 0.517392 | 4_2:-69282471 | Msa0618350:CDS |
| GAGCAATGAACATTTGTCAA+AGG | 0.518105 | 4_2:-69281551 | Msa0618350:CDS |
| GATAAGATTAATGTGCAGCC+AGG | 0.519062 | 4_2:-69281225 | Msa0618350:CDS |
| TCAACAAGCAAAGGTTGCTA+TGG | 0.522875 | 4_2:-69281184 | Msa0618350:CDS |
| GCTTTGGATTGTTGAAATGT+GGG | 0.523100 | 4_2:-69281077 | Msa0618350:CDS |
| TGCTTTGGATTGTTGAAATG+TGG | 0.525124 | 4_2:-69281078 | Msa0618350:CDS |
| ACCTTTGTTTACCAATTGGA+GGG | 0.527830 | 4_2:-69282329 | Msa0618350:CDS |
| TCCCTCCAATTGGTAAACAA+AGG | 0.547567 | 4_2:+69282328 | None:intergenic |
| AAGTGTTAACTGAGAATGAA+AGG | 0.547593 | 4_2:+69282362 | None:intergenic |
| CCAACCTGATGTGAAACCTC+TGG | 0.548146 | 4_2:+69282162 | None:intergenic |
| AGAAGAAAATAAAAGCATGA+TGG | 0.548385 | 4_2:-69281511 | Msa0618350:CDS |
| ACAAGCAAAGGTTGCTATGG+AGG | 0.549456 | 4_2:-69281181 | Msa0618350:CDS |
| CTTTGGATTGTTGAAATGTG+GGG | 0.549473 | 4_2:-69281076 | Msa0618350:CDS |
| TGCTATGGAGGAATTGAAGG+TGG | 0.557165 | 4_2:-69281169 | Msa0618350:CDS |
| TTTGATCATCAAGGTTATGA+GGG | 0.558607 | 4_2:-69281318 | Msa0618350:CDS |
| ACCAATTGGAGGGAAATGGT+TGG | 0.561405 | 4_2:-69282319 | Msa0618350:CDS |
| TTACTAATGACTTTGTTATG+TGG | 0.565437 | 4_2:-69281369 | Msa0618350:CDS |
| GAAATGGTTGGATGAATACA+TGG | 0.570471 | 4_2:-69282307 | Msa0618350:CDS |
| GAAGTTATGTGAGAGGATCA+AGG | 0.572002 | 4_2:+69282428 | None:intergenic |
| ATTGAGTCCTTGAGTAAGGA+AGG | 0.575451 | 4_2:+69282464 | None:intergenic |
| TATGTGAGAGGATCAAGGAT+TGG | 0.581297 | 4_2:+69282433 | None:intergenic |
| GTGAAACCTCTGGAGTCAAA+TGG | 0.586320 | 4_2:+69282172 | None:intergenic |
| ATAAGATTAATGTGCAGCCA+GGG | 0.590633 | 4_2:-69281224 | Msa0618350:CDS |
| TTGATCATCAAGGTTATGAG+GGG | 0.611306 | 4_2:-69281317 | Msa0618350:CDS |
| AATACATGGATGAAAGCTCA+AGG | 0.622095 | 4_2:-69282293 | Msa0618350:CDS |
| AATTCAAAGAGCAAAATCCC+TGG | 0.635496 | 4_2:+69281207 | None:intergenic |
| ATTCCACCATTTGACTCCAG+AGG | 0.639924 | 4_2:-69282178 | Msa0618350:CDS |
| TCAAATTTAAACGAATACAA+CGG | 0.646473 | 4_2:-69281435 | Msa0618350:CDS |
| AAACCTCTGGAGTCAAATGG+TGG | 0.660746 | 4_2:+69282175 | None:intergenic |
| TTGACATGAAGTTATGTGAG+AGG | 0.664386 | 4_2:+69282421 | None:intergenic |
| ATGGTGGAATCCATCCAATG+AGG | 0.695461 | 4_2:+69282191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTTTGTAACAAAAAAA+CGG | + | chr4_2:69281841-69281860 | None:intergenic | 15.0% |
| !! | ATTTGTTTGTAACAAAAAAA+CGG | + | chr4_2:69281841-69281860 | None:intergenic | 15.0% |
| !! | CATTGTGATATTTGATATTA+TGG | + | chr4_2:69281508-69281527 | None:intergenic | 20.0% |
| !!! | TTTGATTTAGAATCTTTTTG+AGG | - | chr4_2:69281544-69281563 | Msa0618350:CDS | 20.0% |
| !!! | TTGATTTAGAATCTTTTTGA+GGG | - | chr4_2:69281545-69281564 | Msa0618350:CDS | 20.0% |
| !!! | AAGTGTATACCTTTAAAAAA+GGG | + | chr4_2:69281795-69281814 | None:intergenic | 20.0% |
| !!! | TAAGTGTATACCTTTAAAAA+AGG | + | chr4_2:69281796-69281815 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGCTTTATGTAT+TGG | - | chr4_2:69281861-69281880 | Msa0618350:intron | 20.0% |
| !! | ATATTCTATAATCTATATGC+AGG | - | chr4_2:69281920-69281939 | Msa0618350:intron | 20.0% |
| !! | TCAAATTTAAACGAATACAA+CGG | - | chr4_2:69282065-69282084 | Msa0618350:intron | 20.0% |
| !! | CATTGTGATATTTGATATTA+TGG | + | chr4_2:69281508-69281527 | None:intergenic | 20.0% |
| !!! | TTTGATTTAGAATCTTTTTG+AGG | - | chr4_2:69281544-69281563 | Msa0618350:CDS | 20.0% |
| !!! | TTGATTTAGAATCTTTTTGA+GGG | - | chr4_2:69281545-69281564 | Msa0618350:CDS | 20.0% |
| !!! | AAGTGTATACCTTTAAAAAA+GGG | + | chr4_2:69281795-69281814 | None:intergenic | 20.0% |
| !!! | TAAGTGTATACCTTTAAAAA+AGG | + | chr4_2:69281796-69281815 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGCTTTATGTAT+TGG | - | chr4_2:69281861-69281880 | Msa0618350:intron | 20.0% |
| !! | ATATTCTATAATCTATATGC+AGG | - | chr4_2:69281920-69281939 | Msa0618350:intron | 20.0% |
| !! | TCAAATTTAAACGAATACAA+CGG | - | chr4_2:69282065-69282084 | Msa0618350:intron | 20.0% |
| !!! | TGATTTAGAATCTTTTTGAG+GGG | - | chr4_2:69281546-69281565 | Msa0618350:CDS | 25.0% |
| !! | AGAAGAAAATAAAAGCATGA+TGG | - | chr4_2:69281989-69282008 | Msa0618350:intron | 25.0% |
| !! | TTACTAATGACTTTGTTATG+TGG | - | chr4_2:69282131-69282150 | Msa0618350:intron | 25.0% |
| !!! | TTCAAGTTTTATGGTTTCAA+TGG | - | chr4_2:69282220-69282239 | Msa0618350:CDS | 25.0% |
| ! | TTCTTTGATGAAATTGTTGA+AGG | - | chr4_2:69282476-69282495 | Msa0618350:CDS | 25.0% |
| !!! | TGATTTAGAATCTTTTTGAG+GGG | - | chr4_2:69281546-69281565 | Msa0618350:CDS | 25.0% |
| !! | AGAAGAAAATAAAAGCATGA+TGG | - | chr4_2:69281989-69282008 | Msa0618350:intron | 25.0% |
| !! | TTACTAATGACTTTGTTATG+TGG | - | chr4_2:69282131-69282150 | Msa0618350:intron | 25.0% |
| !!! | TTCAAGTTTTATGGTTTCAA+TGG | - | chr4_2:69282220-69282239 | Msa0618350:CDS | 25.0% |
| ! | TTCTTTGATGAAATTGTTGA+AGG | - | chr4_2:69282476-69282495 | Msa0618350:CDS | 25.0% |
| ACAAACTCTTCTTCTATCAA+TGG | - | chr4_2:69281005-69281024 | Msa0618350:CDS | 30.0% | |
| GTCAATTCAATTCATTTCTG+AGG | - | chr4_2:69281097-69281116 | Msa0618350:CDS | 30.0% | |
| AAGTGTTAACTGAGAATGAA+AGG | + | chr4_2:69281141-69281160 | None:intergenic | 30.0% | |
| ! | TCATTCTCAGTTAACACTTT+TGG | - | chr4_2:69281142-69281161 | Msa0618350:CDS | 30.0% |
| ! | CAAAACCTTTGTTTACCAAT+TGG | - | chr4_2:69281167-69281186 | Msa0618350:CDS | 30.0% |
| ATAGTTCTCAATTCCAGAAA+TGG | + | chr4_2:69281264-69281283 | None:intergenic | 30.0% | |
| ATACTATCTCAACTGTAGTT+AGG | + | chr4_2:69281463-69281482 | None:intergenic | 30.0% | |
| !!! | AATCCAAAGCCCTTTTTTAA+AGG | - | chr4_2:69281783-69281802 | Msa0618350:intron | 30.0% |
| ! | ATACCTTTAAAAAAGGGCTT+TGG | + | chr4_2:69281789-69281808 | None:intergenic | 30.0% |
| AGCAATGAACATTTGTCAAA+GGG | - | chr4_2:69281950-69281969 | Msa0618350:intron | 30.0% | |
| ATTTGTCAAAGGGAGATTAT+AGG | - | chr4_2:69281960-69281979 | Msa0618350:intron | 30.0% | |
| ! | TTGATTCTAAAGACATGTTC+TGG | + | chr4_2:69282049-69282068 | None:intergenic | 30.0% |
| ! | TTTTGATCATCAAGGTTATG+AGG | - | chr4_2:69282181-69282200 | Msa0618350:CDS | 30.0% |
| TTTGATCATCAAGGTTATGA+GGG | - | chr4_2:69282182-69282201 | Msa0618350:CDS | 30.0% | |
| !!! | GGTTTTTGGTTCAAGTTTTA+TGG | - | chr4_2:69282211-69282230 | Msa0618350:CDS | 30.0% |
| CTTTGAATTTCAACAAGCAA+AGG | - | chr4_2:69282307-69282326 | Msa0618350:CDS | 30.0% | |
| TTGATGAAATTGTTGAAGGA+AGG | - | chr4_2:69282480-69282499 | Msa0618350:CDS | 30.0% | |
| ACAAACTCTTCTTCTATCAA+TGG | - | chr4_2:69281005-69281024 | Msa0618350:CDS | 30.0% | |
| GTCAATTCAATTCATTTCTG+AGG | - | chr4_2:69281097-69281116 | Msa0618350:CDS | 30.0% | |
| AAGTGTTAACTGAGAATGAA+AGG | + | chr4_2:69281141-69281160 | None:intergenic | 30.0% | |
| ! | TCATTCTCAGTTAACACTTT+TGG | - | chr4_2:69281142-69281161 | Msa0618350:CDS | 30.0% |
| ! | CAAAACCTTTGTTTACCAAT+TGG | - | chr4_2:69281167-69281186 | Msa0618350:CDS | 30.0% |
| ATAGTTCTCAATTCCAGAAA+TGG | + | chr4_2:69281264-69281283 | None:intergenic | 30.0% | |
| ATACTATCTCAACTGTAGTT+AGG | + | chr4_2:69281463-69281482 | None:intergenic | 30.0% | |
| !!! | AATCCAAAGCCCTTTTTTAA+AGG | - | chr4_2:69281783-69281802 | Msa0618350:intron | 30.0% |
| ! | ATACCTTTAAAAAAGGGCTT+TGG | + | chr4_2:69281789-69281808 | None:intergenic | 30.0% |
| AGCAATGAACATTTGTCAAA+GGG | - | chr4_2:69281950-69281969 | Msa0618350:intron | 30.0% | |
| ATTTGTCAAAGGGAGATTAT+AGG | - | chr4_2:69281960-69281979 | Msa0618350:intron | 30.0% | |
| ! | TTGATTCTAAAGACATGTTC+TGG | + | chr4_2:69282049-69282068 | None:intergenic | 30.0% |
| ! | TTTTGATCATCAAGGTTATG+AGG | - | chr4_2:69282181-69282200 | Msa0618350:CDS | 30.0% |
| TTTGATCATCAAGGTTATGA+GGG | - | chr4_2:69282182-69282201 | Msa0618350:CDS | 30.0% | |
| !!! | GGTTTTTGGTTCAAGTTTTA+TGG | - | chr4_2:69282211-69282230 | Msa0618350:CDS | 30.0% |
| CTTTGAATTTCAACAAGCAA+AGG | - | chr4_2:69282307-69282326 | Msa0618350:CDS | 30.0% | |
| TTGATGAAATTGTTGAAGGA+AGG | - | chr4_2:69282480-69282499 | Msa0618350:CDS | 30.0% | |
| TTCTATACCTTCCTTACTCA+AGG | - | chr4_2:69281029-69281048 | Msa0618350:CDS | 35.0% | |
| TTGACATGAAGTTATGTGAG+AGG | + | chr4_2:69281082-69281101 | None:intergenic | 35.0% | |
| ! | AACCTTTGTTTACCAATTGG+AGG | - | chr4_2:69281170-69281189 | Msa0618350:CDS | 35.0% |
| ! | ACCTTTGTTTACCAATTGGA+GGG | - | chr4_2:69281171-69281190 | Msa0618350:CDS | 35.0% |
| GAAATGGTTGGATGAATACA+TGG | - | chr4_2:69281193-69281212 | Msa0618350:CDS | 35.0% | |
| AATACATGGATGAAAGCTCA+AGG | - | chr4_2:69281207-69281226 | Msa0618350:CDS | 35.0% | |
| GTACTCAAATCTTCCATTTC+TGG | - | chr4_2:69281248-69281267 | Msa0618350:CDS | 35.0% | |
| ATTGAGAACTATTCTTCAGC+TGG | - | chr4_2:69281272-69281291 | Msa0618350:CDS | 35.0% | |
| CTCTAATATTGCTACCTCAT+TGG | - | chr4_2:69281295-69281314 | Msa0618350:CDS | 35.0% | |
| AATATTGCTACCTCATTGGA+TGG | - | chr4_2:69281299-69281318 | Msa0618350:CDS | 35.0% | |
| CACAAAACGTCTTGAAAAGA+AGG | - | chr4_2:69281371-69281390 | Msa0618350:CDS | 35.0% | |
| AAAGACATCAGAAACCTTGA+TGG | + | chr4_2:69281429-69281448 | None:intergenic | 35.0% | |
| !! | AGAATCTTTTTGAGGGGATT+TGG | - | chr4_2:69281552-69281571 | Msa0618350:CDS | 35.0% |
| AAATACCAAACCTCGAAATC+TGG | - | chr4_2:69281688-69281707 | Msa0618350:intron | 35.0% | |
| ! | GTATATCAATCGGTTGATGT+TGG | + | chr4_2:69281729-69281748 | None:intergenic | 35.0% |
| ! | AACGGCTTTTGACAGAAATT+TGG | + | chr4_2:69281823-69281842 | None:intergenic | 35.0% |
| GAGCAATGAACATTTGTCAA+AGG | - | chr4_2:69281949-69281968 | Msa0618350:intron | 35.0% | |
| TCAAAGGGAGATTATAGGAA+TGG | - | chr4_2:69281965-69281984 | Msa0618350:intron | 35.0% | |
| !! | TATGTGGTGTTGCATATTGT+TGG | - | chr4_2:69282147-69282166 | Msa0618350:intron | 35.0% |
| !!! | TCGTCATGTTTTGATCATCA+AGG | - | chr4_2:69282173-69282192 | Msa0618350:CDS | 35.0% |
| TTGATCATCAAGGTTATGAG+GGG | - | chr4_2:69282183-69282202 | Msa0618350:CDS | 35.0% | |
| ATAAGATTAATGTGCAGCCA+GGG | - | chr4_2:69282276-69282295 | Msa0618350:CDS | 35.0% | |
| AATTCAAAGAGCAAAATCCC+TGG | + | chr4_2:69282296-69282315 | None:intergenic | 35.0% | |
| GAGAAGTTACAAAGTTGCTT+TGG | - | chr4_2:69282407-69282426 | Msa0618350:CDS | 35.0% | |
| ! | TGCTTTGGATTGTTGAAATG+TGG | - | chr4_2:69282422-69282441 | Msa0618350:CDS | 35.0% |
| ! | GCTTTGGATTGTTGAAATGT+GGG | - | chr4_2:69282423-69282442 | Msa0618350:CDS | 35.0% |
| CTTTGGATTGTTGAAATGTG+GGG | - | chr4_2:69282424-69282443 | Msa0618350:CDS | 35.0% | |
| TTCTATACCTTCCTTACTCA+AGG | - | chr4_2:69281029-69281048 | Msa0618350:CDS | 35.0% | |
| TTGACATGAAGTTATGTGAG+AGG | + | chr4_2:69281082-69281101 | None:intergenic | 35.0% | |
| ! | AACCTTTGTTTACCAATTGG+AGG | - | chr4_2:69281170-69281189 | Msa0618350:CDS | 35.0% |
| ! | ACCTTTGTTTACCAATTGGA+GGG | - | chr4_2:69281171-69281190 | Msa0618350:CDS | 35.0% |
| GAAATGGTTGGATGAATACA+TGG | - | chr4_2:69281193-69281212 | Msa0618350:CDS | 35.0% | |
| AATACATGGATGAAAGCTCA+AGG | - | chr4_2:69281207-69281226 | Msa0618350:CDS | 35.0% | |
| GTACTCAAATCTTCCATTTC+TGG | - | chr4_2:69281248-69281267 | Msa0618350:CDS | 35.0% | |
| ATTGAGAACTATTCTTCAGC+TGG | - | chr4_2:69281272-69281291 | Msa0618350:CDS | 35.0% | |
| CTCTAATATTGCTACCTCAT+TGG | - | chr4_2:69281295-69281314 | Msa0618350:CDS | 35.0% | |
| AATATTGCTACCTCATTGGA+TGG | - | chr4_2:69281299-69281318 | Msa0618350:CDS | 35.0% | |
| CACAAAACGTCTTGAAAAGA+AGG | - | chr4_2:69281371-69281390 | Msa0618350:CDS | 35.0% | |
| AAAGACATCAGAAACCTTGA+TGG | + | chr4_2:69281429-69281448 | None:intergenic | 35.0% | |
| !! | AGAATCTTTTTGAGGGGATT+TGG | - | chr4_2:69281552-69281571 | Msa0618350:CDS | 35.0% |
| AAATACCAAACCTCGAAATC+TGG | - | chr4_2:69281688-69281707 | Msa0618350:intron | 35.0% | |
| ! | GTATATCAATCGGTTGATGT+TGG | + | chr4_2:69281729-69281748 | None:intergenic | 35.0% |
| ! | AACGGCTTTTGACAGAAATT+TGG | + | chr4_2:69281823-69281842 | None:intergenic | 35.0% |
| GAGCAATGAACATTTGTCAA+AGG | - | chr4_2:69281949-69281968 | Msa0618350:intron | 35.0% | |
| TCAAAGGGAGATTATAGGAA+TGG | - | chr4_2:69281965-69281984 | Msa0618350:intron | 35.0% | |
| !! | TATGTGGTGTTGCATATTGT+TGG | - | chr4_2:69282147-69282166 | Msa0618350:intron | 35.0% |
| !!! | TCGTCATGTTTTGATCATCA+AGG | - | chr4_2:69282173-69282192 | Msa0618350:CDS | 35.0% |
| TTGATCATCAAGGTTATGAG+GGG | - | chr4_2:69282183-69282202 | Msa0618350:CDS | 35.0% | |
| ATAAGATTAATGTGCAGCCA+GGG | - | chr4_2:69282276-69282295 | Msa0618350:CDS | 35.0% | |
| AATTCAAAGAGCAAAATCCC+TGG | + | chr4_2:69282296-69282315 | None:intergenic | 35.0% | |
| GAGAAGTTACAAAGTTGCTT+TGG | - | chr4_2:69282407-69282426 | Msa0618350:CDS | 35.0% | |
| ! | TGCTTTGGATTGTTGAAATG+TGG | - | chr4_2:69282422-69282441 | Msa0618350:CDS | 35.0% |
| ! | GCTTTGGATTGTTGAAATGT+GGG | - | chr4_2:69282423-69282442 | Msa0618350:CDS | 35.0% |
| CTTTGGATTGTTGAAATGTG+GGG | - | chr4_2:69282424-69282443 | Msa0618350:CDS | 35.0% | |
| ATTGAGTCCTTGAGTAAGGA+AGG | + | chr4_2:69281039-69281058 | None:intergenic | 40.0% | |
| GAACATTGAGTCCTTGAGTA+AGG | + | chr4_2:69281043-69281062 | None:intergenic | 40.0% | |
| TATGTGAGAGGATCAAGGAT+TGG | + | chr4_2:69281070-69281089 | None:intergenic | 40.0% | |
| GAAGTTATGTGAGAGGATCA+AGG | + | chr4_2:69281075-69281094 | None:intergenic | 40.0% | |
| TCCCTCCAATTGGTAAACAA+AGG | + | chr4_2:69281175-69281194 | None:intergenic | 40.0% | |
| GTTTACCAATTGGAGGGAAA+TGG | - | chr4_2:69281177-69281196 | Msa0618350:CDS | 40.0% | |
| !! | TAATTTTAGTCGCGCCATCA+AGG | - | chr4_2:69281412-69281431 | Msa0618350:CDS | 40.0% |
| ! | CAACTGTAGTTAGGTTGTAG+CGG | + | chr4_2:69281454-69281473 | None:intergenic | 40.0% |
| CTAAATCAAAGTCGCAATCG+CGG | + | chr4_2:69281534-69281553 | None:intergenic | 40.0% | |
| ATTGAACGATCCAGATTTCG+AGG | + | chr4_2:69281701-69281720 | None:intergenic | 40.0% | |
| CGCACGATCAGTATATCAAT+CGG | + | chr4_2:69281739-69281758 | None:intergenic | 40.0% | |
| ! | AACGAATACAACGGTTTTCG+AGG | - | chr4_2:69282074-69282093 | Msa0618350:intron | 40.0% |
| !! | TATGAGGGGAACTTGGTTTT+TGG | - | chr4_2:69282197-69282216 | Msa0618350:CDS | 40.0% |
| GCAAGATTGCAGCATAAAGT+TGG | - | chr4_2:69282242-69282261 | Msa0618350:CDS | 40.0% | |
| GATAAGATTAATGTGCAGCC+AGG | - | chr4_2:69282275-69282294 | Msa0618350:CDS | 40.0% | |
| TCAACAAGCAAAGGTTGCTA+TGG | - | chr4_2:69282316-69282335 | Msa0618350:CDS | 40.0% | |
| TGTGGGGCTGAAAATCTAAT+AGG | - | chr4_2:69282440-69282459 | Msa0618350:CDS | 40.0% | |
| GTGGGGCTGAAAATCTAATA+GGG | - | chr4_2:69282441-69282460 | Msa0618350:CDS | 40.0% | |
| ! | TGAAGGAAGGAAGAAGCTTT+TGG | - | chr4_2:69282493-69282512 | Msa0618350:CDS | 40.0% |
| ATTGAGTCCTTGAGTAAGGA+AGG | + | chr4_2:69281039-69281058 | None:intergenic | 40.0% | |
| GAACATTGAGTCCTTGAGTA+AGG | + | chr4_2:69281043-69281062 | None:intergenic | 40.0% | |
| TATGTGAGAGGATCAAGGAT+TGG | + | chr4_2:69281070-69281089 | None:intergenic | 40.0% | |
| GAAGTTATGTGAGAGGATCA+AGG | + | chr4_2:69281075-69281094 | None:intergenic | 40.0% | |
| TCCCTCCAATTGGTAAACAA+AGG | + | chr4_2:69281175-69281194 | None:intergenic | 40.0% | |
| GTTTACCAATTGGAGGGAAA+TGG | - | chr4_2:69281177-69281196 | Msa0618350:CDS | 40.0% | |
| !! | TAATTTTAGTCGCGCCATCA+AGG | - | chr4_2:69281412-69281431 | Msa0618350:CDS | 40.0% |
| ! | CAACTGTAGTTAGGTTGTAG+CGG | + | chr4_2:69281454-69281473 | None:intergenic | 40.0% |
| CTAAATCAAAGTCGCAATCG+CGG | + | chr4_2:69281534-69281553 | None:intergenic | 40.0% | |
| ATTGAACGATCCAGATTTCG+AGG | + | chr4_2:69281701-69281720 | None:intergenic | 40.0% | |
| CGCACGATCAGTATATCAAT+CGG | + | chr4_2:69281739-69281758 | None:intergenic | 40.0% | |
| ! | AACGAATACAACGGTTTTCG+AGG | - | chr4_2:69282074-69282093 | Msa0618350:intron | 40.0% |
| !! | TATGAGGGGAACTTGGTTTT+TGG | - | chr4_2:69282197-69282216 | Msa0618350:CDS | 40.0% |
| GCAAGATTGCAGCATAAAGT+TGG | - | chr4_2:69282242-69282261 | Msa0618350:CDS | 40.0% | |
| GATAAGATTAATGTGCAGCC+AGG | - | chr4_2:69282275-69282294 | Msa0618350:CDS | 40.0% | |
| TCAACAAGCAAAGGTTGCTA+TGG | - | chr4_2:69282316-69282335 | Msa0618350:CDS | 40.0% | |
| TGTGGGGCTGAAAATCTAAT+AGG | - | chr4_2:69282440-69282459 | Msa0618350:CDS | 40.0% | |
| GTGGGGCTGAAAATCTAATA+GGG | - | chr4_2:69282441-69282460 | Msa0618350:CDS | 40.0% | |
| ! | TGAAGGAAGGAAGAAGCTTT+TGG | - | chr4_2:69282493-69282512 | Msa0618350:CDS | 40.0% |
| ACCAATTGGAGGGAAATGGT+TGG | - | chr4_2:69281181-69281200 | Msa0618350:CDS | 45.0% | |
| TCCAACCATTTCCCTCCAAT+TGG | + | chr4_2:69281185-69281204 | None:intergenic | 45.0% | |
| TGGATGAAAGCTCAAGGCTT+TGG | - | chr4_2:69281213-69281232 | Msa0618350:CDS | 45.0% | |
| GGATGAAAGCTCAAGGCTTT+GGG | - | chr4_2:69281214-69281233 | Msa0618350:CDS | 45.0% | |
| ! | ATGGTGGAATCCATCCAATG+AGG | + | chr4_2:69281312-69281331 | None:intergenic | 45.0% |
| ATTCCACCATTTGACTCCAG+AGG | - | chr4_2:69281322-69281341 | Msa0618350:CDS | 45.0% | |
| !! | AAACCTCTGGAGTCAAATGG+TGG | + | chr4_2:69281328-69281347 | None:intergenic | 45.0% |
| !! | GTGAAACCTCTGGAGTCAAA+TGG | + | chr4_2:69281331-69281350 | None:intergenic | 45.0% |
| AGCAATCCCATGCATTCATG+CGG | - | chr4_2:69281588-69281607 | Msa0618350:intron | 45.0% | |
| CATTCATGCGGTCAGCATAT+CGG | - | chr4_2:69281600-69281619 | Msa0618350:intron | 45.0% | |
| GTCAGCATATCGGTGGTTAT+TGG | - | chr4_2:69281610-69281629 | Msa0618350:intron | 45.0% | |
| ACGATCCAGATTTCGAGGTT+TGG | + | chr4_2:69281696-69281715 | None:intergenic | 45.0% | |
| ATACTGATCGTGCGAATGTG+TGG | - | chr4_2:69281745-69281764 | Msa0618350:intron | 45.0% | |
| TCAAGGTTATGAGGGGAACT+TGG | - | chr4_2:69282190-69282209 | Msa0618350:CDS | 45.0% | |
| ACAAGCAAAGGTTGCTATGG+AGG | - | chr4_2:69282319-69282338 | Msa0618350:CDS | 45.0% | |
| GGTTGCTATGGAGGAATTGA+AGG | - | chr4_2:69282328-69282347 | Msa0618350:CDS | 45.0% | |
| TGCTATGGAGGAATTGAAGG+TGG | - | chr4_2:69282331-69282350 | Msa0618350:CDS | 45.0% | |
| ACCAATTGGAGGGAAATGGT+TGG | - | chr4_2:69281181-69281200 | Msa0618350:CDS | 45.0% | |
| TCCAACCATTTCCCTCCAAT+TGG | + | chr4_2:69281185-69281204 | None:intergenic | 45.0% | |
| TGGATGAAAGCTCAAGGCTT+TGG | - | chr4_2:69281213-69281232 | Msa0618350:CDS | 45.0% | |
| GGATGAAAGCTCAAGGCTTT+GGG | - | chr4_2:69281214-69281233 | Msa0618350:CDS | 45.0% | |
| ! | ATGGTGGAATCCATCCAATG+AGG | + | chr4_2:69281312-69281331 | None:intergenic | 45.0% |
| ATTCCACCATTTGACTCCAG+AGG | - | chr4_2:69281322-69281341 | Msa0618350:CDS | 45.0% | |
| !! | AAACCTCTGGAGTCAAATGG+TGG | + | chr4_2:69281328-69281347 | None:intergenic | 45.0% |
| !! | GTGAAACCTCTGGAGTCAAA+TGG | + | chr4_2:69281331-69281350 | None:intergenic | 45.0% |
| AGCAATCCCATGCATTCATG+CGG | - | chr4_2:69281588-69281607 | Msa0618350:intron | 45.0% | |
| CATTCATGCGGTCAGCATAT+CGG | - | chr4_2:69281600-69281619 | Msa0618350:intron | 45.0% | |
| GTCAGCATATCGGTGGTTAT+TGG | - | chr4_2:69281610-69281629 | Msa0618350:intron | 45.0% | |
| ACGATCCAGATTTCGAGGTT+TGG | + | chr4_2:69281696-69281715 | None:intergenic | 45.0% | |
| ATACTGATCGTGCGAATGTG+TGG | - | chr4_2:69281745-69281764 | Msa0618350:intron | 45.0% | |
| TCAAGGTTATGAGGGGAACT+TGG | - | chr4_2:69282190-69282209 | Msa0618350:CDS | 45.0% | |
| ACAAGCAAAGGTTGCTATGG+AGG | - | chr4_2:69282319-69282338 | Msa0618350:CDS | 45.0% | |
| GGTTGCTATGGAGGAATTGA+AGG | - | chr4_2:69282328-69282347 | Msa0618350:CDS | 45.0% | |
| TGCTATGGAGGAATTGAAGG+TGG | - | chr4_2:69282331-69282350 | Msa0618350:CDS | 45.0% | |
| GACTCCAGAGGTTTCACATC+AGG | - | chr4_2:69281334-69281353 | Msa0618350:CDS | 50.0% | |
| CCAACCTGATGTGAAACCTC+TGG | + | chr4_2:69281341-69281360 | None:intergenic | 50.0% | |
| CCAGAGGTTTCACATCAGGT+TGG | - | chr4_2:69281338-69281357 | Msa0618350:CDS | 50.0% | |
| TGCTGACCGCATGAATGCAT+GGG | + | chr4_2:69281597-69281616 | None:intergenic | 50.0% | |
| ATGCTGACCGCATGAATGCA+TGG | + | chr4_2:69281598-69281617 | None:intergenic | 50.0% | |
| GGAGGAATTGAAGGTGGAGT+TGG | - | chr4_2:69282337-69282356 | Msa0618350:CDS | 50.0% | |
| GACTCCAGAGGTTTCACATC+AGG | - | chr4_2:69281334-69281353 | Msa0618350:CDS | 50.0% | |
| CCAACCTGATGTGAAACCTC+TGG | + | chr4_2:69281341-69281360 | None:intergenic | 50.0% | |
| CCAGAGGTTTCACATCAGGT+TGG | - | chr4_2:69281338-69281357 | Msa0618350:CDS | 50.0% | |
| TGCTGACCGCATGAATGCAT+GGG | + | chr4_2:69281597-69281616 | None:intergenic | 50.0% | |
| ATGCTGACCGCATGAATGCA+TGG | + | chr4_2:69281598-69281617 | None:intergenic | 50.0% | |
| GGAGGAATTGAAGGTGGAGT+TGG | - | chr4_2:69282337-69282356 | Msa0618350:CDS | 50.0% | |
| TCATGCGGTCAGCATATCGG+TGG | - | chr4_2:69281603-69281622 | Msa0618350:intron | 55.0% | |
| TCATGCGGTCAGCATATCGG+TGG | - | chr4_2:69281603-69281622 | Msa0618350:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69280987 | 69282535 | 69280987 | ID=Msa0618350;Name=Msa0618350 |
| chr4_2 | mRNA | 69280987 | 69282535 | 69280987 | ID=Msa0618350-mRNA-1;Parent=Msa0618350;Name=Msa0618350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0|1|1|1|2|0|320 |
| chr4_2 | exon | 69282167 | 69282535 | 69282167 | ID=Msa0618350-mRNA-1:exon:20011;Parent=Msa0618350-mRNA-1 |
| chr4_2 | exon | 69280987 | 69281580 | 69280987 | ID=Msa0618350-mRNA-1:exon:20010;Parent=Msa0618350-mRNA-1 |
| chr4_2 | CDS | 69282167 | 69282535 | 69282167 | ID=Msa0618350-mRNA-1:cds;Parent=Msa0618350-mRNA-1 |
| chr4_2 | CDS | 69280987 | 69281580 | 69280987 | ID=Msa0618350-mRNA-1:cds;Parent=Msa0618350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
