Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702750 | XP_003629964.1 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702750 | G7L8V0 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618350 | Msa0702750 | 0.951853 | 8.477539e-110 | -8.615850e-47 |
| Msa0702750 | Msa0753370 | 0.801445 | 8.975771e-49 | -8.615850e-47 |
| Msa0702750 | Msa1412130 | 0.805272 | 1.446491e-49 | -8.615850e-47 |
| Msa0702750 | Msa1425260 | 0.800518 | 1.388039e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702750 | MtrunA17_Chr8g0380671 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 638 |
| Msa0702750 | MtrunA17_Chr2g0277641 | 66.771 | 319 | 82 | 7 | 1 | 314 | 2 | 301 | 1.74e-132 | 379 |
| Msa0702750 | MtrunA17_Chr3g0115301 | 56.966 | 323 | 129 | 3 | 7 | 320 | 4 | 325 | 2.03e-126 | 364 |
| Msa0702750 | MtrunA17_Chr5g0424821 | 52.564 | 312 | 140 | 3 | 14 | 320 | 19 | 327 | 2.87e-114 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0702750 | AT1G22030.1 | 46.269 | 335 | 156 | 7 | 5 | 320 | 4 | 333 | 4.85e-92 | 277 |
| Msa0702750 | AT1G77855.1 | 42.727 | 330 | 159 | 6 | 5 | 320 | 4 | 317 | 1.66e-82 | 253 |
Find 62 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTCAAATCTTCCATTTC+TGG | 0.131935 | 4_4:-74516731 | Msa0702750:CDS |
| TGTGGGGCTGAAAATCTAAT+AGG | 0.285057 | 4_4:-74515539 | Msa0702750:CDS |
| TCATTCTCAGTTAACACTTT+TGG | 0.294264 | 4_4:-74516837 | Msa0702750:CDS |
| TTGATTCTAAAGACATGTTC+TGG | 0.316353 | 4_4:+74515933 | None:intergenic |
| TGAAGGAAGGAAGAAGCTTT+TGG | 0.324823 | 4_4:-74515486 | Msa0702750:CDS |
| ATTTGTCAAAGGGAGATTAT+AGG | 0.349709 | 4_4:-74516019 | Msa0702750:CDS |
| TGGATGAAAGCTCAAGGCTT+TGG | 0.359827 | 4_4:-74516766 | Msa0702750:CDS |
| CAAAACCTTTGTTTACCAAT+TGG | 0.375448 | 4_4:-74516812 | Msa0702750:CDS |
| CTCTAATATTGCTACCTCAT+TGG | 0.382485 | 4_4:-74516684 | Msa0702750:CDS |
| GTTTACCAATTGGAGGGAAA+TGG | 0.389799 | 4_4:-74516802 | Msa0702750:CDS |
| ATAGTTCTCAATTCCAGAAA+TGG | 0.392682 | 4_4:+74516718 | None:intergenic |
| GGATGAAAGCTCAAGGCTTT+GGG | 0.404488 | 4_4:-74516765 | Msa0702750:CDS |
| GAGAAGTTACAAAGTTGCTT+TGG | 0.412171 | 4_4:-74515572 | Msa0702750:CDS |
| TATGTGGTGTTGCATATTGT+TGG | 0.414157 | 4_4:-74515832 | Msa0702750:CDS |
| GACTCCAGAGGTTTCACATC+AGG | 0.418966 | 4_4:-74516645 | Msa0702750:intron |
| GGAGGAATTGAAGGTGGAGT+TGG | 0.433591 | 4_4:-74515642 | Msa0702750:CDS |
| TCCAACCATTTCCCTCCAAT+TGG | 0.434345 | 4_4:+74516797 | None:intergenic |
| GTGGGGCTGAAAATCTAATA+GGG | 0.440555 | 4_4:-74515538 | Msa0702750:CDS |
| ACAAACTCTTCTTCTATCAA+TGG | 0.457789 | 4_4:-74516974 | Msa0702750:CDS |
| TCAAGGTTATGAGGGGAACT+TGG | 0.470031 | 4_4:-74515789 | Msa0702750:CDS |
| TTGATGAAATTGTTGAAGGA+AGG | 0.475480 | 4_4:-74515499 | Msa0702750:CDS |
| AGCAATGAACATTTGTCAAA+GGG | 0.476331 | 4_4:-74516029 | Msa0702750:CDS |
| GGTTGCTATGGAGGAATTGA+AGG | 0.490202 | 4_4:-74515651 | Msa0702750:CDS |
| GCAAGATTGCAGCATAAAGT+TGG | 0.492188 | 4_4:-74515737 | Msa0702750:CDS |
| AACCTTTGTTTACCAATTGG+AGG | 0.495754 | 4_4:-74516809 | Msa0702750:CDS |
| CTTTGAATTTCAACAAGCAA+AGG | 0.496259 | 4_4:-74515672 | Msa0702750:CDS |
| GAACATTGAGTCCTTGAGTA+AGG | 0.496597 | 4_4:+74516939 | None:intergenic |
| ATTGAGAACTATTCTTCAGC+TGG | 0.496650 | 4_4:-74516707 | Msa0702750:CDS |
| TCAAAGGGAGATTATAGGAA+TGG | 0.499787 | 4_4:-74516014 | Msa0702750:CDS |
| GTCAATTCAATTCATTTCTG+AGG | 0.508039 | 4_4:-74516882 | Msa0702750:CDS |
| TTCTTTGATGAAATTGTTGA+AGG | 0.510188 | 4_4:-74515503 | Msa0702750:CDS |
| AATATTGCTACCTCATTGGA+TGG | 0.514160 | 4_4:-74516680 | Msa0702750:CDS |
| TTCTATACCTTCCTTACTCA+AGG | 0.517392 | 4_4:-74516950 | Msa0702750:CDS |
| GAGCAATGAACATTTGTCAA+AGG | 0.518105 | 4_4:-74516030 | Msa0702750:CDS |
| GATAAGATTAATGTGCAGCC+AGG | 0.519062 | 4_4:-74515704 | Msa0702750:CDS |
| TCAACAAGCAAAGGTTGCTA+TGG | 0.522875 | 4_4:-74515663 | Msa0702750:CDS |
| GCTTTGGATTGTTGAAATGT+GGG | 0.523100 | 4_4:-74515556 | Msa0702750:CDS |
| TGCTTTGGATTGTTGAAATG+TGG | 0.525124 | 4_4:-74515557 | Msa0702750:CDS |
| ACCTTTGTTTACCAATTGGA+GGG | 0.527830 | 4_4:-74516808 | Msa0702750:CDS |
| TCCCTCCAATTGGTAAACAA+AGG | 0.547567 | 4_4:+74516807 | None:intergenic |
| AAGTGTTAACTGAGAATGAA+AGG | 0.547593 | 4_4:+74516841 | None:intergenic |
| CCAACCTGATGTGAAACCTC+TGG | 0.548146 | 4_4:+74516641 | None:intergenic |
| AGAAGAAAATAAAAGCATGA+TGG | 0.548385 | 4_4:-74515990 | Msa0702750:CDS |
| ACAAGCAAAGGTTGCTATGG+AGG | 0.549456 | 4_4:-74515660 | Msa0702750:CDS |
| CTTTGGATTGTTGAAATGTG+GGG | 0.549473 | 4_4:-74515555 | Msa0702750:CDS |
| TGCTATGGAGGAATTGAAGG+TGG | 0.557165 | 4_4:-74515648 | Msa0702750:CDS |
| TTTGATCATCAAGGTTATGA+GGG | 0.558607 | 4_4:-74515797 | Msa0702750:CDS |
| ACCAATTGGAGGGAAATGGT+TGG | 0.561405 | 4_4:-74516798 | Msa0702750:CDS |
| GAAATGGTTGGATGAATACA+TGG | 0.570471 | 4_4:-74516786 | Msa0702750:CDS |
| GAAGTTATGTGAGAGGATCA+AGG | 0.572002 | 4_4:+74516907 | None:intergenic |
| ATTGAGTCCTTGAGTAAGGA+AGG | 0.575451 | 4_4:+74516943 | None:intergenic |
| TATGTGAGAGGATCAAGGAT+TGG | 0.581297 | 4_4:+74516912 | None:intergenic |
| GTGAAACCTCTGGAGTCAAA+TGG | 0.586320 | 4_4:+74516651 | None:intergenic |
| ATAAGATTAATGTGCAGCCA+GGG | 0.590633 | 4_4:-74515703 | Msa0702750:CDS |
| TTGATCATCAAGGTTATGAG+GGG | 0.611306 | 4_4:-74515796 | Msa0702750:CDS |
| AATACATGGATGAAAGCTCA+AGG | 0.622095 | 4_4:-74516772 | Msa0702750:CDS |
| AATTCAAAGAGCAAAATCCC+TGG | 0.635496 | 4_4:+74515686 | None:intergenic |
| ATTCCACCATTTGACTCCAG+AGG | 0.639924 | 4_4:-74516657 | Msa0702750:CDS |
| TCAAATTTAAACGAATACAA+CGG | 0.646473 | 4_4:-74515914 | Msa0702750:CDS |
| AAACCTCTGGAGTCAAATGG+TGG | 0.660746 | 4_4:+74516654 | None:intergenic |
| TTGACATGAAGTTATGTGAG+AGG | 0.664386 | 4_4:+74516900 | None:intergenic |
| ATGGTGGAATCCATCCAATG+AGG | 0.695461 | 4_4:+74516670 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGTATACCTTTAAAAAA+GGG | + | chr4_4:74516278-74516297 | None:intergenic | 15.0% |
| !!! | TAATTGTATACCTTTAAAAA+AGG | + | chr4_4:74516279-74516298 | None:intergenic | 15.0% |
| !!! | AATTGTATACCTTTAAAAAA+GGG | + | chr4_4:74516278-74516297 | None:intergenic | 15.0% |
| !!! | TAATTGTATACCTTTAAAAA+AGG | + | chr4_4:74516279-74516298 | None:intergenic | 15.0% |
| !! | CATTGTGATATTTGATATTA+TGG | + | chr4_4:74515992-74516011 | None:intergenic | 20.0% |
| !!! | TTTGATTTAGAATCTTTTTG+AGG | - | chr4_4:74516028-74516047 | Msa0702750:CDS | 20.0% |
| !!! | TTGATTTAGAATCTTTTTGA+GGG | - | chr4_4:74516029-74516048 | Msa0702750:CDS | 20.0% |
| !! | ATTTGTTTGTGACAAAAAAA+CGG | + | chr4_4:74516324-74516343 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGCTTTATGTAT+TGG | - | chr4_4:74516344-74516363 | Msa0702750:intron | 20.0% |
| !! | ATATTCTATAATCTATATGC+AGG | - | chr4_4:74516399-74516418 | Msa0702750:intron | 20.0% |
| !! | TCAAATTTAAACGAATACAA+CGG | - | chr4_4:74516544-74516563 | Msa0702750:intron | 20.0% |
| !!! | TTACTAATGATTTTGTTATG+TGG | - | chr4_4:74516610-74516629 | Msa0702750:intron | 20.0% |
| !! | CATTGTGATATTTGATATTA+TGG | + | chr4_4:74515992-74516011 | None:intergenic | 20.0% |
| !!! | TTTGATTTAGAATCTTTTTG+AGG | - | chr4_4:74516028-74516047 | Msa0702750:CDS | 20.0% |
| !!! | TTGATTTAGAATCTTTTTGA+GGG | - | chr4_4:74516029-74516048 | Msa0702750:CDS | 20.0% |
| !! | ATTTGTTTGTGACAAAAAAA+CGG | + | chr4_4:74516324-74516343 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGCTTTATGTAT+TGG | - | chr4_4:74516344-74516363 | Msa0702750:intron | 20.0% |
| !! | ATATTCTATAATCTATATGC+AGG | - | chr4_4:74516399-74516418 | Msa0702750:intron | 20.0% |
| !! | TCAAATTTAAACGAATACAA+CGG | - | chr4_4:74516544-74516563 | Msa0702750:intron | 20.0% |
| !!! | TTACTAATGATTTTGTTATG+TGG | - | chr4_4:74516610-74516629 | Msa0702750:intron | 20.0% |
| !!! | TGATTTAGAATCTTTTTGAG+GGG | - | chr4_4:74516030-74516049 | Msa0702750:CDS | 25.0% |
| !! | AGAAGAAAATAAAAGCATGA+TGG | - | chr4_4:74516468-74516487 | Msa0702750:intron | 25.0% |
| !!! | TTCAAGTTTTATGGTTTCAA+TGG | - | chr4_4:74516699-74516718 | Msa0702750:CDS | 25.0% |
| ! | TTCTTTGATGAAATTGTTGA+AGG | - | chr4_4:74516955-74516974 | Msa0702750:CDS | 25.0% |
| !!! | TGATTTAGAATCTTTTTGAG+GGG | - | chr4_4:74516030-74516049 | Msa0702750:CDS | 25.0% |
| !! | AGAAGAAAATAAAAGCATGA+TGG | - | chr4_4:74516468-74516487 | Msa0702750:intron | 25.0% |
| !!! | TTCAAGTTTTATGGTTTCAA+TGG | - | chr4_4:74516699-74516718 | Msa0702750:CDS | 25.0% |
| ! | TTCTTTGATGAAATTGTTGA+AGG | - | chr4_4:74516955-74516974 | Msa0702750:CDS | 25.0% |
| ACAAACTCTTCTTCTATCAA+TGG | - | chr4_4:74515484-74515503 | Msa0702750:CDS | 30.0% | |
| GTCAATTCAATTCATTTCTG+AGG | - | chr4_4:74515576-74515595 | Msa0702750:CDS | 30.0% | |
| AAGTGTTAACTGAGAATGAA+AGG | + | chr4_4:74515620-74515639 | None:intergenic | 30.0% | |
| ! | TCATTCTCAGTTAACACTTT+TGG | - | chr4_4:74515621-74515640 | Msa0702750:CDS | 30.0% |
| ! | CAAAACCTTTGTTTACCAAT+TGG | - | chr4_4:74515646-74515665 | Msa0702750:CDS | 30.0% |
| ATAGTTCTCAATTCCAGAAA+TGG | + | chr4_4:74515743-74515762 | None:intergenic | 30.0% | |
| ATACTATCTCAACTGTAGTT+AGG | + | chr4_4:74515948-74515967 | None:intergenic | 30.0% | |
| !!! | AATCCAAAGCCCTTTTTTAA+AGG | - | chr4_4:74516266-74516285 | Msa0702750:intron | 30.0% |
| ! | ATACCTTTAAAAAAGGGCTT+TGG | + | chr4_4:74516272-74516291 | None:intergenic | 30.0% |
| AGCAATGAACATTTGTCAAA+GGG | - | chr4_4:74516429-74516448 | Msa0702750:intron | 30.0% | |
| ATTTGTCAAAGGGAGATTAT+AGG | - | chr4_4:74516439-74516458 | Msa0702750:intron | 30.0% | |
| ! | TTGATTCTAAAGACATGTTC+TGG | + | chr4_4:74516528-74516547 | None:intergenic | 30.0% |
| !!! | TCATCATGTTTTGATCATCA+AGG | - | chr4_4:74516652-74516671 | Msa0702750:CDS | 30.0% |
| ! | TTTTGATCATCAAGGTTATG+AGG | - | chr4_4:74516660-74516679 | Msa0702750:CDS | 30.0% |
| TTTGATCATCAAGGTTATGA+GGG | - | chr4_4:74516661-74516680 | Msa0702750:CDS | 30.0% | |
| !!! | GGTTTTTGGTTCAAGTTTTA+TGG | - | chr4_4:74516690-74516709 | Msa0702750:CDS | 30.0% |
| CTTTGAATTTCAACAAGCAA+AGG | - | chr4_4:74516786-74516805 | Msa0702750:CDS | 30.0% | |
| TTGATGAAATTGTTGAAGGA+AGG | - | chr4_4:74516959-74516978 | Msa0702750:CDS | 30.0% | |
| ACAAACTCTTCTTCTATCAA+TGG | - | chr4_4:74515484-74515503 | Msa0702750:CDS | 30.0% | |
| GTCAATTCAATTCATTTCTG+AGG | - | chr4_4:74515576-74515595 | Msa0702750:CDS | 30.0% | |
| AAGTGTTAACTGAGAATGAA+AGG | + | chr4_4:74515620-74515639 | None:intergenic | 30.0% | |
| ! | TCATTCTCAGTTAACACTTT+TGG | - | chr4_4:74515621-74515640 | Msa0702750:CDS | 30.0% |
| ! | CAAAACCTTTGTTTACCAAT+TGG | - | chr4_4:74515646-74515665 | Msa0702750:CDS | 30.0% |
| ATAGTTCTCAATTCCAGAAA+TGG | + | chr4_4:74515743-74515762 | None:intergenic | 30.0% | |
| ATACTATCTCAACTGTAGTT+AGG | + | chr4_4:74515948-74515967 | None:intergenic | 30.0% | |
| !!! | AATCCAAAGCCCTTTTTTAA+AGG | - | chr4_4:74516266-74516285 | Msa0702750:intron | 30.0% |
| ! | ATACCTTTAAAAAAGGGCTT+TGG | + | chr4_4:74516272-74516291 | None:intergenic | 30.0% |
| AGCAATGAACATTTGTCAAA+GGG | - | chr4_4:74516429-74516448 | Msa0702750:intron | 30.0% | |
| ATTTGTCAAAGGGAGATTAT+AGG | - | chr4_4:74516439-74516458 | Msa0702750:intron | 30.0% | |
| ! | TTGATTCTAAAGACATGTTC+TGG | + | chr4_4:74516528-74516547 | None:intergenic | 30.0% |
| !!! | TCATCATGTTTTGATCATCA+AGG | - | chr4_4:74516652-74516671 | Msa0702750:CDS | 30.0% |
| ! | TTTTGATCATCAAGGTTATG+AGG | - | chr4_4:74516660-74516679 | Msa0702750:CDS | 30.0% |
| TTTGATCATCAAGGTTATGA+GGG | - | chr4_4:74516661-74516680 | Msa0702750:CDS | 30.0% | |
| !!! | GGTTTTTGGTTCAAGTTTTA+TGG | - | chr4_4:74516690-74516709 | Msa0702750:CDS | 30.0% |
| CTTTGAATTTCAACAAGCAA+AGG | - | chr4_4:74516786-74516805 | Msa0702750:CDS | 30.0% | |
| TTGATGAAATTGTTGAAGGA+AGG | - | chr4_4:74516959-74516978 | Msa0702750:CDS | 30.0% | |
| TTCTATACCTTCCTTACTCA+AGG | - | chr4_4:74515508-74515527 | Msa0702750:CDS | 35.0% | |
| TTGACATGAAGTTATGTGAG+AGG | + | chr4_4:74515561-74515580 | None:intergenic | 35.0% | |
| ! | AACCTTTGTTTACCAATTGG+AGG | - | chr4_4:74515649-74515668 | Msa0702750:CDS | 35.0% |
| ! | ACCTTTGTTTACCAATTGGA+GGG | - | chr4_4:74515650-74515669 | Msa0702750:CDS | 35.0% |
| GAAATGGTTGGATGAATACA+TGG | - | chr4_4:74515672-74515691 | Msa0702750:CDS | 35.0% | |
| AATACATGGATGAAAGCTCA+AGG | - | chr4_4:74515686-74515705 | Msa0702750:CDS | 35.0% | |
| GTACTCAAATCTTCCATTTC+TGG | - | chr4_4:74515727-74515746 | Msa0702750:CDS | 35.0% | |
| ATTGAGAACTATTCTTCAGC+TGG | - | chr4_4:74515751-74515770 | Msa0702750:CDS | 35.0% | |
| CTCTAATATTGCTACCTCAT+TGG | - | chr4_4:74515774-74515793 | Msa0702750:CDS | 35.0% | |
| AATATTGCTACCTCATTGGA+TGG | - | chr4_4:74515778-74515797 | Msa0702750:CDS | 35.0% | |
| CACAAAACGTCTTGAAAAGA+AGG | - | chr4_4:74515850-74515869 | Msa0702750:CDS | 35.0% | |
| AAAGACATCAGAAACCTTGA+TGG | + | chr4_4:74515914-74515933 | None:intergenic | 35.0% | |
| !! | AGAATCTTTTTGAGGGGATT+TGG | - | chr4_4:74516036-74516055 | Msa0702750:CDS | 35.0% |
| AAATACCAAACCTCGAAATC+TGG | - | chr4_4:74516171-74516190 | Msa0702750:intron | 35.0% | |
| ! | GTATATCAATCGGTTGATGT+TGG | + | chr4_4:74516212-74516231 | None:intergenic | 35.0% |
| ! | AACGGCTTTTGACAGAAATT+TGG | + | chr4_4:74516306-74516325 | None:intergenic | 35.0% |
| GAGCAATGAACATTTGTCAA+AGG | - | chr4_4:74516428-74516447 | Msa0702750:intron | 35.0% | |
| TCAAAGGGAGATTATAGGAA+TGG | - | chr4_4:74516444-74516463 | Msa0702750:intron | 35.0% | |
| !! | TATGTGGTGTTGCATATTGT+TGG | - | chr4_4:74516626-74516645 | Msa0702750:intron | 35.0% |
| TTGATCATCAAGGTTATGAG+GGG | - | chr4_4:74516662-74516681 | Msa0702750:CDS | 35.0% | |
| ATAAGATTAATGTGCAGCCA+GGG | - | chr4_4:74516755-74516774 | Msa0702750:CDS | 35.0% | |
| AATTCAAAGAGCAAAATCCC+TGG | + | chr4_4:74516775-74516794 | None:intergenic | 35.0% | |
| GAGAAGTTACAAAGTTGCTT+TGG | - | chr4_4:74516886-74516905 | Msa0702750:CDS | 35.0% | |
| ! | TGCTTTGGATTGTTGAAATG+TGG | - | chr4_4:74516901-74516920 | Msa0702750:CDS | 35.0% |
| ! | GCTTTGGATTGTTGAAATGT+GGG | - | chr4_4:74516902-74516921 | Msa0702750:CDS | 35.0% |
| CTTTGGATTGTTGAAATGTG+GGG | - | chr4_4:74516903-74516922 | Msa0702750:CDS | 35.0% | |
| TTCTATACCTTCCTTACTCA+AGG | - | chr4_4:74515508-74515527 | Msa0702750:CDS | 35.0% | |
| TTGACATGAAGTTATGTGAG+AGG | + | chr4_4:74515561-74515580 | None:intergenic | 35.0% | |
| ! | AACCTTTGTTTACCAATTGG+AGG | - | chr4_4:74515649-74515668 | Msa0702750:CDS | 35.0% |
| ! | ACCTTTGTTTACCAATTGGA+GGG | - | chr4_4:74515650-74515669 | Msa0702750:CDS | 35.0% |
| GAAATGGTTGGATGAATACA+TGG | - | chr4_4:74515672-74515691 | Msa0702750:CDS | 35.0% | |
| AATACATGGATGAAAGCTCA+AGG | - | chr4_4:74515686-74515705 | Msa0702750:CDS | 35.0% | |
| GTACTCAAATCTTCCATTTC+TGG | - | chr4_4:74515727-74515746 | Msa0702750:CDS | 35.0% | |
| ATTGAGAACTATTCTTCAGC+TGG | - | chr4_4:74515751-74515770 | Msa0702750:CDS | 35.0% | |
| CTCTAATATTGCTACCTCAT+TGG | - | chr4_4:74515774-74515793 | Msa0702750:CDS | 35.0% | |
| AATATTGCTACCTCATTGGA+TGG | - | chr4_4:74515778-74515797 | Msa0702750:CDS | 35.0% | |
| CACAAAACGTCTTGAAAAGA+AGG | - | chr4_4:74515850-74515869 | Msa0702750:CDS | 35.0% | |
| AAAGACATCAGAAACCTTGA+TGG | + | chr4_4:74515914-74515933 | None:intergenic | 35.0% | |
| !! | AGAATCTTTTTGAGGGGATT+TGG | - | chr4_4:74516036-74516055 | Msa0702750:CDS | 35.0% |
| AAATACCAAACCTCGAAATC+TGG | - | chr4_4:74516171-74516190 | Msa0702750:intron | 35.0% | |
| ! | GTATATCAATCGGTTGATGT+TGG | + | chr4_4:74516212-74516231 | None:intergenic | 35.0% |
| ! | AACGGCTTTTGACAGAAATT+TGG | + | chr4_4:74516306-74516325 | None:intergenic | 35.0% |
| GAGCAATGAACATTTGTCAA+AGG | - | chr4_4:74516428-74516447 | Msa0702750:intron | 35.0% | |
| TCAAAGGGAGATTATAGGAA+TGG | - | chr4_4:74516444-74516463 | Msa0702750:intron | 35.0% | |
| !! | TATGTGGTGTTGCATATTGT+TGG | - | chr4_4:74516626-74516645 | Msa0702750:intron | 35.0% |
| TTGATCATCAAGGTTATGAG+GGG | - | chr4_4:74516662-74516681 | Msa0702750:CDS | 35.0% | |
| ATAAGATTAATGTGCAGCCA+GGG | - | chr4_4:74516755-74516774 | Msa0702750:CDS | 35.0% | |
| AATTCAAAGAGCAAAATCCC+TGG | + | chr4_4:74516775-74516794 | None:intergenic | 35.0% | |
| GAGAAGTTACAAAGTTGCTT+TGG | - | chr4_4:74516886-74516905 | Msa0702750:CDS | 35.0% | |
| ! | TGCTTTGGATTGTTGAAATG+TGG | - | chr4_4:74516901-74516920 | Msa0702750:CDS | 35.0% |
| ! | GCTTTGGATTGTTGAAATGT+GGG | - | chr4_4:74516902-74516921 | Msa0702750:CDS | 35.0% |
| CTTTGGATTGTTGAAATGTG+GGG | - | chr4_4:74516903-74516922 | Msa0702750:CDS | 35.0% | |
| ATTGAGTCCTTGAGTAAGGA+AGG | + | chr4_4:74515518-74515537 | None:intergenic | 40.0% | |
| GAACATTGAGTCCTTGAGTA+AGG | + | chr4_4:74515522-74515541 | None:intergenic | 40.0% | |
| TATGTGAGAGGATCAAGGAT+TGG | + | chr4_4:74515549-74515568 | None:intergenic | 40.0% | |
| GAAGTTATGTGAGAGGATCA+AGG | + | chr4_4:74515554-74515573 | None:intergenic | 40.0% | |
| TCCCTCCAATTGGTAAACAA+AGG | + | chr4_4:74515654-74515673 | None:intergenic | 40.0% | |
| GTTTACCAATTGGAGGGAAA+TGG | - | chr4_4:74515656-74515675 | Msa0702750:CDS | 40.0% | |
| ! | CAACTGTAGTTAGGTTGTAG+CGG | + | chr4_4:74515939-74515958 | None:intergenic | 40.0% |
| CTAAATCAAAGTCGCAATCG+CGG | + | chr4_4:74516018-74516037 | None:intergenic | 40.0% | |
| ATTGAACGATCCAGATTTCG+AGG | + | chr4_4:74516184-74516203 | None:intergenic | 40.0% | |
| ! | AACGAATACAACGGTTTTCG+AGG | - | chr4_4:74516553-74516572 | Msa0702750:intron | 40.0% |
| !! | TATGAGGGGAACTTGGTTTT+TGG | - | chr4_4:74516676-74516695 | Msa0702750:CDS | 40.0% |
| GCAAGATTGCAGCATAAAGT+TGG | - | chr4_4:74516721-74516740 | Msa0702750:CDS | 40.0% | |
| GATAAGATTAATGTGCAGCC+AGG | - | chr4_4:74516754-74516773 | Msa0702750:CDS | 40.0% | |
| TCAACAAGCAAAGGTTGCTA+TGG | - | chr4_4:74516795-74516814 | Msa0702750:CDS | 40.0% | |
| TGTGGGGCTGAAAATCTAAT+AGG | - | chr4_4:74516919-74516938 | Msa0702750:CDS | 40.0% | |
| GTGGGGCTGAAAATCTAATA+GGG | - | chr4_4:74516920-74516939 | Msa0702750:CDS | 40.0% | |
| ! | TGAAGGAAGGAAGAAGCTTT+TGG | - | chr4_4:74516972-74516991 | Msa0702750:CDS | 40.0% |
| ATTGAGTCCTTGAGTAAGGA+AGG | + | chr4_4:74515518-74515537 | None:intergenic | 40.0% | |
| GAACATTGAGTCCTTGAGTA+AGG | + | chr4_4:74515522-74515541 | None:intergenic | 40.0% | |
| TATGTGAGAGGATCAAGGAT+TGG | + | chr4_4:74515549-74515568 | None:intergenic | 40.0% | |
| GAAGTTATGTGAGAGGATCA+AGG | + | chr4_4:74515554-74515573 | None:intergenic | 40.0% | |
| TCCCTCCAATTGGTAAACAA+AGG | + | chr4_4:74515654-74515673 | None:intergenic | 40.0% | |
| GTTTACCAATTGGAGGGAAA+TGG | - | chr4_4:74515656-74515675 | Msa0702750:CDS | 40.0% | |
| ! | CAACTGTAGTTAGGTTGTAG+CGG | + | chr4_4:74515939-74515958 | None:intergenic | 40.0% |
| CTAAATCAAAGTCGCAATCG+CGG | + | chr4_4:74516018-74516037 | None:intergenic | 40.0% | |
| ATTGAACGATCCAGATTTCG+AGG | + | chr4_4:74516184-74516203 | None:intergenic | 40.0% | |
| ! | AACGAATACAACGGTTTTCG+AGG | - | chr4_4:74516553-74516572 | Msa0702750:intron | 40.0% |
| !! | TATGAGGGGAACTTGGTTTT+TGG | - | chr4_4:74516676-74516695 | Msa0702750:CDS | 40.0% |
| GCAAGATTGCAGCATAAAGT+TGG | - | chr4_4:74516721-74516740 | Msa0702750:CDS | 40.0% | |
| GATAAGATTAATGTGCAGCC+AGG | - | chr4_4:74516754-74516773 | Msa0702750:CDS | 40.0% | |
| TCAACAAGCAAAGGTTGCTA+TGG | - | chr4_4:74516795-74516814 | Msa0702750:CDS | 40.0% | |
| TGTGGGGCTGAAAATCTAAT+AGG | - | chr4_4:74516919-74516938 | Msa0702750:CDS | 40.0% | |
| GTGGGGCTGAAAATCTAATA+GGG | - | chr4_4:74516920-74516939 | Msa0702750:CDS | 40.0% | |
| ! | TGAAGGAAGGAAGAAGCTTT+TGG | - | chr4_4:74516972-74516991 | Msa0702750:CDS | 40.0% |
| ACCAATTGGAGGGAAATGGT+TGG | - | chr4_4:74515660-74515679 | Msa0702750:CDS | 45.0% | |
| TCCAACCATTTCCCTCCAAT+TGG | + | chr4_4:74515664-74515683 | None:intergenic | 45.0% | |
| TGGATGAAAGCTCAAGGCTT+TGG | - | chr4_4:74515692-74515711 | Msa0702750:CDS | 45.0% | |
| GGATGAAAGCTCAAGGCTTT+GGG | - | chr4_4:74515693-74515712 | Msa0702750:CDS | 45.0% | |
| ! | ATGGTGGAATCCATCCAATG+AGG | + | chr4_4:74515791-74515810 | None:intergenic | 45.0% |
| ATTCCACCATTTGACTCCAG+AGG | - | chr4_4:74515801-74515820 | Msa0702750:CDS | 45.0% | |
| !! | AAACCTCTGGAGTCAAATGG+TGG | + | chr4_4:74515807-74515826 | None:intergenic | 45.0% |
| !! | GTGAAACCTCTGGAGTCAAA+TGG | + | chr4_4:74515810-74515829 | None:intergenic | 45.0% |
| AGCAATCCCATGCATTCATG+CGG | - | chr4_4:74516072-74516091 | Msa0702750:intron | 45.0% | |
| CATTCATGCGGTCAGCATAT+CGG | - | chr4_4:74516084-74516103 | Msa0702750:intron | 45.0% | |
| GTCAGCATATCGGTGGTTAT+TGG | - | chr4_4:74516094-74516113 | Msa0702750:intron | 45.0% | |
| ACGATCCAGATTTCGAGGTT+TGG | + | chr4_4:74516179-74516198 | None:intergenic | 45.0% | |
| CGCACGGTCAGTATATCAAT+CGG | + | chr4_4:74516222-74516241 | None:intergenic | 45.0% | |
| TCACAATCCACACATTCGCA+CGG | + | chr4_4:74516238-74516257 | None:intergenic | 45.0% | |
| TCAAGGTTATGAGGGGAACT+TGG | - | chr4_4:74516669-74516688 | Msa0702750:CDS | 45.0% | |
| ACAAGCAAAGGTTGCTATGG+AGG | - | chr4_4:74516798-74516817 | Msa0702750:CDS | 45.0% | |
| GGTTGCTATGGAGGAATTGA+AGG | - | chr4_4:74516807-74516826 | Msa0702750:CDS | 45.0% | |
| TGCTATGGAGGAATTGAAGG+TGG | - | chr4_4:74516810-74516829 | Msa0702750:CDS | 45.0% | |
| ACCAATTGGAGGGAAATGGT+TGG | - | chr4_4:74515660-74515679 | Msa0702750:CDS | 45.0% | |
| TCCAACCATTTCCCTCCAAT+TGG | + | chr4_4:74515664-74515683 | None:intergenic | 45.0% | |
| TGGATGAAAGCTCAAGGCTT+TGG | - | chr4_4:74515692-74515711 | Msa0702750:CDS | 45.0% | |
| GGATGAAAGCTCAAGGCTTT+GGG | - | chr4_4:74515693-74515712 | Msa0702750:CDS | 45.0% | |
| ! | ATGGTGGAATCCATCCAATG+AGG | + | chr4_4:74515791-74515810 | None:intergenic | 45.0% |
| ATTCCACCATTTGACTCCAG+AGG | - | chr4_4:74515801-74515820 | Msa0702750:CDS | 45.0% | |
| !! | AAACCTCTGGAGTCAAATGG+TGG | + | chr4_4:74515807-74515826 | None:intergenic | 45.0% |
| !! | GTGAAACCTCTGGAGTCAAA+TGG | + | chr4_4:74515810-74515829 | None:intergenic | 45.0% |
| AGCAATCCCATGCATTCATG+CGG | - | chr4_4:74516072-74516091 | Msa0702750:intron | 45.0% | |
| CATTCATGCGGTCAGCATAT+CGG | - | chr4_4:74516084-74516103 | Msa0702750:intron | 45.0% | |
| GTCAGCATATCGGTGGTTAT+TGG | - | chr4_4:74516094-74516113 | Msa0702750:intron | 45.0% | |
| ACGATCCAGATTTCGAGGTT+TGG | + | chr4_4:74516179-74516198 | None:intergenic | 45.0% | |
| CGCACGGTCAGTATATCAAT+CGG | + | chr4_4:74516222-74516241 | None:intergenic | 45.0% | |
| TCACAATCCACACATTCGCA+CGG | + | chr4_4:74516238-74516257 | None:intergenic | 45.0% | |
| TCAAGGTTATGAGGGGAACT+TGG | - | chr4_4:74516669-74516688 | Msa0702750:CDS | 45.0% | |
| ACAAGCAAAGGTTGCTATGG+AGG | - | chr4_4:74516798-74516817 | Msa0702750:CDS | 45.0% | |
| GGTTGCTATGGAGGAATTGA+AGG | - | chr4_4:74516807-74516826 | Msa0702750:CDS | 45.0% | |
| TGCTATGGAGGAATTGAAGG+TGG | - | chr4_4:74516810-74516829 | Msa0702750:CDS | 45.0% | |
| GACTCCAGAGGTTTCACATC+AGG | - | chr4_4:74515813-74515832 | Msa0702750:CDS | 50.0% | |
| CCAACCTGATGTGAAACCTC+TGG | + | chr4_4:74515820-74515839 | None:intergenic | 50.0% | |
| CCAGAGGTTTCACATCAGGT+TGG | - | chr4_4:74515817-74515836 | Msa0702750:CDS | 50.0% | |
| TGCTGACCGCATGAATGCAT+GGG | + | chr4_4:74516081-74516100 | None:intergenic | 50.0% | |
| ATGCTGACCGCATGAATGCA+TGG | + | chr4_4:74516082-74516101 | None:intergenic | 50.0% | |
| ATACTGACCGTGCGAATGTG+TGG | - | chr4_4:74516228-74516247 | Msa0702750:intron | 50.0% | |
| GGAGGAATTGAAGGTGGAGT+TGG | - | chr4_4:74516816-74516835 | Msa0702750:CDS | 50.0% | |
| GACTCCAGAGGTTTCACATC+AGG | - | chr4_4:74515813-74515832 | Msa0702750:CDS | 50.0% | |
| CCAACCTGATGTGAAACCTC+TGG | + | chr4_4:74515820-74515839 | None:intergenic | 50.0% | |
| CCAGAGGTTTCACATCAGGT+TGG | - | chr4_4:74515817-74515836 | Msa0702750:CDS | 50.0% | |
| TGCTGACCGCATGAATGCAT+GGG | + | chr4_4:74516081-74516100 | None:intergenic | 50.0% | |
| ATGCTGACCGCATGAATGCA+TGG | + | chr4_4:74516082-74516101 | None:intergenic | 50.0% | |
| ATACTGACCGTGCGAATGTG+TGG | - | chr4_4:74516228-74516247 | Msa0702750:intron | 50.0% | |
| GGAGGAATTGAAGGTGGAGT+TGG | - | chr4_4:74516816-74516835 | Msa0702750:CDS | 50.0% | |
| TCATGCGGTCAGCATATCGG+TGG | - | chr4_4:74516087-74516106 | Msa0702750:intron | 55.0% | |
| TCATGCGGTCAGCATATCGG+TGG | - | chr4_4:74516087-74516106 | Msa0702750:intron | 55.0% | |
| TAGTCGCGCTCGCGCCATCA+AGG | - | chr4_4:74515897-74515916 | Msa0702750:CDS | 65.0% | |
| TAGTCGCGCTCGCGCCATCA+AGG | - | chr4_4:74515897-74515916 | Msa0702750:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74515466 | 74517014 | 74515466 | ID=Msa0702750;Name=Msa0702750 |
| chr4_4 | mRNA | 74515466 | 74517014 | 74515466 | ID=Msa0702750-mRNA-1;Parent=Msa0702750;Name=Msa0702750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|320 |
| chr4_4 | exon | 74516646 | 74517014 | 74516646 | ID=Msa0702750-mRNA-1:exon:23256;Parent=Msa0702750-mRNA-1 |
| chr4_4 | exon | 74515466 | 74516059 | 74515466 | ID=Msa0702750-mRNA-1:exon:23255;Parent=Msa0702750-mRNA-1 |
| chr4_4 | CDS | 74516646 | 74517014 | 74516646 | ID=Msa0702750-mRNA-1:cds;Parent=Msa0702750-mRNA-1 |
| chr4_4 | CDS | 74515466 | 74516059 | 74515466 | ID=Msa0702750-mRNA-1:cds;Parent=Msa0702750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
