Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618480 | XP_039684774.1 | 95.882 | 170 | 7 | 0 | 4 | 173 | 597 | 766 | 1.43e-112 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618480 | sp|Q9SUI2|PI5K7_ARATH | 68.485 | 165 | 50 | 2 | 7 | 171 | 590 | 752 | 6.68e-71 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618480 | Msa0658050 | 0.978606 | 3.538639e-146 | -8.615850e-47 |
| Msa0618480 | Msa0702830 | 0.807376 | 5.209629e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618480 | MtrunA17_Chr8g0380791 | 95.322 | 171 | 7 | 1 | 4 | 173 | 597 | 767 | 8.29e-115 | 342 |
| Msa0618480 | MtrunA17_Chr1g0180261 | 54.015 | 137 | 56 | 3 | 35 | 170 | 686 | 816 | 2.30e-42 | 150 |
| Msa0618480 | MtrunA17_Chr3g0115111 | 45.918 | 98 | 43 | 2 | 83 | 171 | 634 | 730 | 9.16e-23 | 94.4 |
| Msa0618480 | MtrunA17_Chr1g0171491 | 45.192 | 104 | 54 | 2 | 66 | 166 | 685 | 788 | 1.12e-21 | 91.3 |
| Msa0618480 | MtrunA17_Chr3g0131001 | 45.361 | 97 | 44 | 3 | 83 | 171 | 608 | 703 | 1.01e-20 | 88.2 |
| Msa0618480 | MtrunA17_Chr5g0424301 | 45.161 | 93 | 42 | 2 | 83 | 166 | 635 | 727 | 2.25e-20 | 87.4 |
| Msa0618480 | MtrunA17_Chr7g0256301 | 48.315 | 89 | 43 | 2 | 85 | 171 | 703 | 790 | 3.52e-20 | 86.7 |
| Msa0618480 | MtrunA17_Chr8g0385201 | 43.956 | 91 | 48 | 2 | 83 | 171 | 576 | 665 | 8.92e-19 | 82.8 |
| Msa0618480 | MtrunA17_Chr3g0082501 | 38.732 | 142 | 71 | 5 | 33 | 171 | 631 | 759 | 1.65e-15 | 73.2 |
| Msa0618480 | MtrunA17_Chr8g0353121 | 42.308 | 104 | 56 | 3 | 70 | 171 | 648 | 749 | 1.57e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0618480 | AT1G10900.2 | 68.485 | 165 | 50 | 2 | 7 | 171 | 590 | 752 | 6.79e-72 | 230 |
| Msa0618480 | AT1G10900.1 | 68.485 | 165 | 50 | 2 | 7 | 171 | 590 | 752 | 6.79e-72 | 230 |
| Msa0618480 | AT1G10900.3 | 68.485 | 165 | 50 | 2 | 7 | 171 | 590 | 752 | 6.79e-72 | 230 |
| Msa0618480 | AT1G60890.2 | 63.473 | 167 | 57 | 3 | 7 | 171 | 615 | 779 | 1.92e-64 | 211 |
| Msa0618480 | AT1G60890.1 | 63.473 | 167 | 57 | 3 | 7 | 171 | 603 | 767 | 2.85e-64 | 210 |
| Msa0618480 | AT3G09920.3 | 52.980 | 151 | 56 | 6 | 23 | 171 | 674 | 811 | 3.23e-42 | 150 |
| Msa0618480 | AT3G09920.4 | 52.980 | 151 | 56 | 6 | 23 | 171 | 674 | 811 | 3.23e-42 | 150 |
| Msa0618480 | AT3G09920.2 | 52.980 | 151 | 56 | 6 | 23 | 171 | 674 | 811 | 3.23e-42 | 150 |
| Msa0618480 | AT3G09920.1 | 52.980 | 151 | 56 | 6 | 23 | 171 | 674 | 811 | 3.23e-42 | 150 |
| Msa0618480 | AT3G07960.1 | 41.732 | 127 | 69 | 4 | 49 | 171 | 588 | 713 | 1.71e-22 | 94.0 |
| Msa0618480 | AT2G41210.1 | 44.860 | 107 | 50 | 3 | 66 | 166 | 663 | 766 | 2.93e-22 | 93.2 |
| Msa0618480 | AT1G77740.2 | 44.231 | 104 | 51 | 2 | 69 | 166 | 646 | 748 | 4.01e-22 | 92.8 |
| Msa0618480 | AT1G77740.1 | 44.231 | 104 | 51 | 2 | 69 | 166 | 646 | 748 | 4.01e-22 | 92.8 |
| Msa0618480 | AT1G21980.1 | 42.727 | 110 | 54 | 3 | 69 | 171 | 644 | 751 | 7.35e-22 | 92.0 |
| Msa0618480 | AT3G56960.2 | 44.643 | 112 | 58 | 3 | 63 | 171 | 667 | 777 | 2.61e-21 | 90.5 |
| Msa0618480 | AT3G56960.1 | 44.643 | 112 | 58 | 3 | 63 | 171 | 667 | 777 | 2.61e-21 | 90.5 |
| Msa0618480 | AT2G26420.1 | 40.157 | 127 | 62 | 5 | 53 | 166 | 574 | 699 | 5.14e-20 | 86.7 |
| Msa0618480 | AT2G26420.2 | 37.143 | 140 | 62 | 5 | 53 | 166 | 574 | 713 | 3.31e-19 | 84.3 |
| Msa0618480 | AT2G26420.3 | 37.143 | 140 | 62 | 5 | 53 | 166 | 574 | 713 | 3.31e-19 | 84.3 |
| Msa0618480 | AT4G01190.3 | 39.326 | 89 | 47 | 1 | 83 | 171 | 322 | 403 | 3.97e-17 | 78.2 |
| Msa0618480 | AT4G01190.2 | 39.326 | 89 | 47 | 1 | 83 | 171 | 322 | 403 | 3.97e-17 | 78.2 |
| Msa0618480 | AT4G01190.1 | 39.326 | 89 | 47 | 1 | 83 | 171 | 312 | 393 | 4.11e-17 | 78.2 |
| Msa0618480 | AT1G01460.1 | 41.237 | 97 | 47 | 3 | 75 | 171 | 336 | 422 | 1.10e-16 | 77.0 |
Find 44 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATGACACTTAATTATT+TGG | 0.050932 | 4_2:-69450727 | Msa0618480:three_prime_UTR |
| CATCAATTTCATGGATAAAA+AGG | 0.210898 | 4_2:-69450991 | Msa0618480:CDS |
| TACAGACATCACGGTATTTC+CGG | 0.243562 | 4_2:+69450963 | None:intergenic |
| CAAATCAATCATATACTAAA+TGG | 0.293412 | 4_2:+69450760 | None:intergenic |
| AATTCAAACAGCTCAATAAA+AGG | 0.308780 | 4_2:-69450791 | Msa0618480:three_prime_UTR |
| CACATGACACTTAATTATTT+GGG | 0.310401 | 4_2:-69450726 | Msa0618480:three_prime_UTR |
| TGAACGTTTCATCAATTTCA+TGG | 0.329150 | 4_2:-69451000 | Msa0618480:CDS |
| CTCAGATTGCCGGTGCAATT+AGG | 0.361997 | 4_2:-69451236 | Msa0618480:intron |
| GTACACAATCATTCATCCTT+TGG | 0.396078 | 4_2:+69450889 | None:intergenic |
| ACAGACATCACGGTATTTCC+GGG | 0.414756 | 4_2:+69450964 | None:intergenic |
| GGGAATAATAGATATACTTC+AGG | 0.414956 | 4_2:-69451114 | Msa0618480:CDS |
| ACGCCTGGACCTCACATTAG+AGG | 0.416249 | 4_2:-69451450 | Msa0618480:CDS |
| AGCTTCGTCAACGCGACGCC+TGG | 0.420191 | 4_2:-69451465 | Msa0618480:CDS |
| ATGAATGTTCCTCAGATTGC+CGG | 0.428484 | 4_2:-69451246 | Msa0618480:intron |
| AAGGCGTTCGTCGAACCTCC+TGG | 0.464255 | 4_2:-69451721 | Msa0618480:CDS |
| ATCAAACTGCAGTGATTTGT+AGG | 0.464399 | 4_2:+69451061 | None:intergenic |
| GCAACTAACAACAAGCCTTT+CGG | 0.464606 | 4_2:+69451498 | None:intergenic |
| AAATACTCACCTTGCAGTAC+CGG | 0.481918 | 4_2:+69451374 | None:intergenic |
| TTTGTAATTAATTGTTCCAA+AGG | 0.483454 | 4_2:-69450905 | Msa0618480:three_prime_UTR |
| TCTGTTACTGATATAGTCAT+AGG | 0.486890 | 4_2:+69451038 | None:intergenic |
| TATAGTTTACCTTCTGCAGA+TGG | 0.505853 | 4_2:-69451682 | Msa0618480:intron |
| TTATGATGTGGTACTCTACA+TGG | 0.514200 | 4_2:-69451135 | Msa0618480:CDS |
| CACTAGATTTACTCAAACAA+GGG | 0.520368 | 4_2:-69451536 | Msa0618480:intron |
| ATCAACTTCCTTGTTACCGA+TGG | 0.520731 | 4_2:+69451407 | None:intergenic |
| TTCCCTCTAATGTGAGGTCC+AGG | 0.521447 | 4_2:+69451447 | None:intergenic |
| GGCGTCGCGTTGACGAAGCT+CGG | 0.526121 | 4_2:+69451468 | None:intergenic |
| CGCCTGGACCTCACATTAGA+GGG | 0.534333 | 4_2:-69451449 | Msa0618480:CDS |
| TACTGACGCTGTATTGCTCC+AGG | 0.536520 | 4_2:+69451703 | None:intergenic |
| ATGTTTACTCCTAATTGCAC+CGG | 0.562596 | 4_2:+69451227 | None:intergenic |
| AGCATACTCCATCGGTAACA+AGG | 0.571690 | 4_2:-69451415 | Msa0618480:CDS |
| GCACTAGATTTACTCAAACA+AGG | 0.574901 | 4_2:-69451537 | Msa0618480:intron |
| AATACTCACCTTGCAGTACC+GGG | 0.588020 | 4_2:+69451375 | None:intergenic |
| AGCAAACTAGTAGCTTGAGC+CGG | 0.603192 | 4_2:+69451203 | None:intergenic |
| TAGTTTGCTTCAAGAAGACA+AGG | 0.625211 | 4_2:-69451189 | Msa0618480:CDS |
| ATATACTAACCATCTGCAGA+AGG | 0.625385 | 4_2:+69451673 | None:intergenic |
| AATGTATTCCCTCTAATGTG+AGG | 0.644444 | 4_2:+69451441 | None:intergenic |
| TAACAAATATACAGACATCA+CGG | 0.648800 | 4_2:+69450954 | None:intergenic |
| TATGATGTGGTACTCTACAT+GGG | 0.652027 | 4_2:-69451134 | Msa0618480:CDS |
| GCAATTAGGAGTAAACATGC+CGG | 0.652141 | 4_2:-69451222 | Msa0618480:CDS |
| ACTAGATTTACTCAAACAAG+GGG | 0.654789 | 4_2:-69451535 | Msa0618480:intron |
| GAGCAGTTGATCATTCCGAA+AGG | 0.659532 | 4_2:-69451513 | Msa0618480:CDS |
| ACATTGAGAGCATACTCCAT+CGG | 0.662326 | 4_2:-69451423 | Msa0618480:CDS |
| TTTGCTTCAAGAAGACAAGG+TGG | 0.679586 | 4_2:-69451186 | Msa0618480:CDS |
| TGACGCTGTATTGCTCCAGG+AGG | 0.761183 | 4_2:+69451706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | NNNNNNNNNNGAGAATCTAA+AGG | - | chr4_2:69450834-69450853 | Msa0618480:three_prime_UTR | 15.0% |
| !!! | TATTTGTTATCTTTTCATTT+TGG | - | chr4_2:69451634-69451653 | Msa0618480:intron | 15.0% |
| !! | NNNNNNNNNNGAGAATCTAA+AGG | - | chr4_2:69450834-69450853 | Msa0618480:three_prime_UTR | 15.0% |
| !!! | TATTTGTTATCTTTTCATTT+TGG | - | chr4_2:69451634-69451653 | Msa0618480:intron | 15.0% |
| !! | CATATCATATTCTAAATAAC+TGG | + | chr4_2:69450936-69450955 | None:intergenic | 20.0% |
| !! | GATATCAATATATAATCACT+AGG | + | chr4_2:69450976-69450995 | None:intergenic | 20.0% |
| !! | TTTGTAATTAATTGTTCCAA+AGG | - | chr4_2:69451669-69451688 | Msa0618480:intron | 20.0% |
| !! | CAAATCAATCATATACTAAA+TGG | + | chr4_2:69451817-69451836 | None:intergenic | 20.0% |
| !! | CATATCATATTCTAAATAAC+TGG | + | chr4_2:69450936-69450955 | None:intergenic | 20.0% |
| !! | GATATCAATATATAATCACT+AGG | + | chr4_2:69450976-69450995 | None:intergenic | 20.0% |
| !! | TTTGTAATTAATTGTTCCAA+AGG | - | chr4_2:69451669-69451688 | Msa0618480:intron | 20.0% |
| !! | CAAATCAATCATATACTAAA+TGG | + | chr4_2:69451817-69451836 | None:intergenic | 20.0% |
| ! | AATATATAATCACTAGGCTT+GGG | + | chr4_2:69450970-69450989 | None:intergenic | 25.0% |
| !! | AAACGTTCAGCATAAATTTT+AGG | + | chr4_2:69451563-69451582 | None:intergenic | 25.0% |
| ! | CATCAATTTCATGGATAAAA+AGG | - | chr4_2:69451583-69451602 | Msa0618480:intron | 25.0% |
| ! | TAACAAATATACAGACATCA+CGG | + | chr4_2:69451623-69451642 | None:intergenic | 25.0% |
| ! | AATTCAAACAGCTCAATAAA+AGG | - | chr4_2:69451783-69451802 | Msa0618480:intron | 25.0% |
| ! | TCACATGACACTTAATTATT+TGG | - | chr4_2:69451847-69451866 | Msa0618480:intron | 25.0% |
| ! | CACATGACACTTAATTATTT+GGG | - | chr4_2:69451848-69451867 | Msa0618480:intron | 25.0% |
| ! | AATATATAATCACTAGGCTT+GGG | + | chr4_2:69450970-69450989 | None:intergenic | 25.0% |
| !! | AAACGTTCAGCATAAATTTT+AGG | + | chr4_2:69451563-69451582 | None:intergenic | 25.0% |
| ! | CATCAATTTCATGGATAAAA+AGG | - | chr4_2:69451583-69451602 | Msa0618480:intron | 25.0% |
| ! | TAACAAATATACAGACATCA+CGG | + | chr4_2:69451623-69451642 | None:intergenic | 25.0% |
| ! | AATTCAAACAGCTCAATAAA+AGG | - | chr4_2:69451783-69451802 | Msa0618480:intron | 25.0% |
| ! | TCACATGACACTTAATTATT+TGG | - | chr4_2:69451847-69451866 | Msa0618480:intron | 25.0% |
| ! | CACATGACACTTAATTATTT+GGG | - | chr4_2:69451848-69451867 | Msa0618480:intron | 25.0% |
| CAATATATAATCACTAGGCT+TGG | + | chr4_2:69450971-69450990 | None:intergenic | 30.0% | |
| CACTAGATTTACTCAAACAA+GGG | - | chr4_2:69451038-69451057 | Msa0618480:CDS | 30.0% | |
| ACTAGATTTACTCAAACAAG+GGG | - | chr4_2:69451039-69451058 | Msa0618480:CDS | 30.0% | |
| GAACTTAAGATCACTAAACT+AGG | - | chr4_2:69451264-69451283 | Msa0618480:intron | 30.0% | |
| GGGAATAATAGATATACTTC+AGG | - | chr4_2:69451460-69451479 | Msa0618480:CDS | 30.0% | |
| TCTGTTACTGATATAGTCAT+AGG | + | chr4_2:69451539-69451558 | None:intergenic | 30.0% | |
| TGAACGTTTCATCAATTTCA+TGG | - | chr4_2:69451574-69451593 | Msa0618480:intron | 30.0% | |
| !! | TGAGATTTGTTTTTCCTGTT+TGG | - | chr4_2:69451746-69451765 | Msa0618480:intron | 30.0% |
| CAATATATAATCACTAGGCT+TGG | + | chr4_2:69450971-69450990 | None:intergenic | 30.0% | |
| CACTAGATTTACTCAAACAA+GGG | - | chr4_2:69451038-69451057 | Msa0618480:CDS | 30.0% | |
| ACTAGATTTACTCAAACAAG+GGG | - | chr4_2:69451039-69451058 | Msa0618480:CDS | 30.0% | |
| GAACTTAAGATCACTAAACT+AGG | - | chr4_2:69451264-69451283 | Msa0618480:intron | 30.0% | |
| GGGAATAATAGATATACTTC+AGG | - | chr4_2:69451460-69451479 | Msa0618480:CDS | 30.0% | |
| TCTGTTACTGATATAGTCAT+AGG | + | chr4_2:69451539-69451558 | None:intergenic | 30.0% | |
| TGAACGTTTCATCAATTTCA+TGG | - | chr4_2:69451574-69451593 | Msa0618480:intron | 30.0% | |
| !! | TGAGATTTGTTTTTCCTGTT+TGG | - | chr4_2:69451746-69451765 | Msa0618480:intron | 30.0% |
| TATAGTTTACCTTCTGCAGA+TGG | - | chr4_2:69450892-69450911 | Msa0618480:three_prime_UTR | 35.0% | |
| ATATACTAACCATCTGCAGA+AGG | + | chr4_2:69450904-69450923 | None:intergenic | 35.0% | |
| TTCTAAATAACTGGCATCAG+AGG | + | chr4_2:69450927-69450946 | None:intergenic | 35.0% | |
| GCACTAGATTTACTCAAACA+AGG | - | chr4_2:69451037-69451056 | Msa0618480:CDS | 35.0% | |
| AATGTATTCCCTCTAATGTG+AGG | + | chr4_2:69451136-69451155 | None:intergenic | 35.0% | |
| ATGTTTACTCCTAATTGCAC+CGG | + | chr4_2:69451350-69451369 | None:intergenic | 35.0% | |
| !! | TAGTTTGCTTCAAGAAGACA+AGG | - | chr4_2:69451385-69451404 | Msa0618480:CDS | 35.0% |
| TTATGATGTGGTACTCTACA+TGG | - | chr4_2:69451439-69451458 | Msa0618480:CDS | 35.0% | |
| TATGATGTGGTACTCTACAT+GGG | - | chr4_2:69451440-69451459 | Msa0618480:CDS | 35.0% | |
| ! | ATCAAACTGCAGTGATTTGT+AGG | + | chr4_2:69451516-69451535 | None:intergenic | 35.0% |
| !! | CATGGATAAAAAGGTATTCC+CGG | - | chr4_2:69451592-69451611 | Msa0618480:intron | 35.0% |
| GTACACAATCATTCATCCTT+TGG | + | chr4_2:69451688-69451707 | None:intergenic | 35.0% | |
| ! | TTTTTCCTGTTTGGCAAAAG+AGG | - | chr4_2:69451755-69451774 | Msa0618480:intron | 35.0% |
| TATAGTTTACCTTCTGCAGA+TGG | - | chr4_2:69450892-69450911 | Msa0618480:three_prime_UTR | 35.0% | |
| ATATACTAACCATCTGCAGA+AGG | + | chr4_2:69450904-69450923 | None:intergenic | 35.0% | |
| TTCTAAATAACTGGCATCAG+AGG | + | chr4_2:69450927-69450946 | None:intergenic | 35.0% | |
| GCACTAGATTTACTCAAACA+AGG | - | chr4_2:69451037-69451056 | Msa0618480:CDS | 35.0% | |
| AATGTATTCCCTCTAATGTG+AGG | + | chr4_2:69451136-69451155 | None:intergenic | 35.0% | |
| ATGTTTACTCCTAATTGCAC+CGG | + | chr4_2:69451350-69451369 | None:intergenic | 35.0% | |
| !! | TAGTTTGCTTCAAGAAGACA+AGG | - | chr4_2:69451385-69451404 | Msa0618480:CDS | 35.0% |
| TTATGATGTGGTACTCTACA+TGG | - | chr4_2:69451439-69451458 | Msa0618480:CDS | 35.0% | |
| TATGATGTGGTACTCTACAT+GGG | - | chr4_2:69451440-69451459 | Msa0618480:CDS | 35.0% | |
| ! | ATCAAACTGCAGTGATTTGT+AGG | + | chr4_2:69451516-69451535 | None:intergenic | 35.0% |
| !! | CATGGATAAAAAGGTATTCC+CGG | - | chr4_2:69451592-69451611 | Msa0618480:intron | 35.0% |
| GTACACAATCATTCATCCTT+TGG | + | chr4_2:69451688-69451707 | None:intergenic | 35.0% | |
| ! | TTTTTCCTGTTTGGCAAAAG+AGG | - | chr4_2:69451755-69451774 | Msa0618480:intron | 35.0% |
| GCAACTAACAACAAGCCTTT+CGG | + | chr4_2:69451079-69451098 | None:intergenic | 40.0% | |
| ! | ACATTGAGAGCATACTCCAT+CGG | - | chr4_2:69451151-69451170 | Msa0618480:CDS | 40.0% |
| ATCAACTTCCTTGTTACCGA+TGG | + | chr4_2:69451170-69451189 | None:intergenic | 40.0% | |
| !! | GAAGTTGATCTTTTACTGCC+CGG | - | chr4_2:69451181-69451200 | Msa0618480:CDS | 40.0% |
| AAATACTCACCTTGCAGTAC+CGG | + | chr4_2:69451203-69451222 | None:intergenic | 40.0% | |
| GTTCCTAATGTAATAGCGAG+CGG | + | chr4_2:69451248-69451267 | None:intergenic | 40.0% | |
| ATGAATGTTCCTCAGATTGC+CGG | - | chr4_2:69451328-69451347 | Msa0618480:intron | 40.0% | |
| GCAATTAGGAGTAAACATGC+CGG | - | chr4_2:69451352-69451371 | Msa0618480:intron | 40.0% | |
| TTTGCTTCAAGAAGACAAGG+TGG | - | chr4_2:69451388-69451407 | Msa0618480:CDS | 40.0% | |
| ! | ATCAGAAGTAGAGCTTTTCG+AGG | - | chr4_2:69451415-69451434 | Msa0618480:CDS | 40.0% |
| !! | GCTTTTCGAGGTTTATGATG+TGG | - | chr4_2:69451427-69451446 | Msa0618480:CDS | 40.0% |
| TACAGACATCACGGTATTTC+CGG | + | chr4_2:69451614-69451633 | None:intergenic | 40.0% | |
| GCAACTAACAACAAGCCTTT+CGG | + | chr4_2:69451079-69451098 | None:intergenic | 40.0% | |
| ! | ACATTGAGAGCATACTCCAT+CGG | - | chr4_2:69451151-69451170 | Msa0618480:CDS | 40.0% |
| ATCAACTTCCTTGTTACCGA+TGG | + | chr4_2:69451170-69451189 | None:intergenic | 40.0% | |
| !! | GAAGTTGATCTTTTACTGCC+CGG | - | chr4_2:69451181-69451200 | Msa0618480:CDS | 40.0% |
| AAATACTCACCTTGCAGTAC+CGG | + | chr4_2:69451203-69451222 | None:intergenic | 40.0% | |
| GTTCCTAATGTAATAGCGAG+CGG | + | chr4_2:69451248-69451267 | None:intergenic | 40.0% | |
| ATGAATGTTCCTCAGATTGC+CGG | - | chr4_2:69451328-69451347 | Msa0618480:intron | 40.0% | |
| GCAATTAGGAGTAAACATGC+CGG | - | chr4_2:69451352-69451371 | Msa0618480:intron | 40.0% | |
| TTTGCTTCAAGAAGACAAGG+TGG | - | chr4_2:69451388-69451407 | Msa0618480:CDS | 40.0% | |
| ! | ATCAGAAGTAGAGCTTTTCG+AGG | - | chr4_2:69451415-69451434 | Msa0618480:CDS | 40.0% |
| !! | GCTTTTCGAGGTTTATGATG+TGG | - | chr4_2:69451427-69451446 | Msa0618480:CDS | 40.0% |
| TACAGACATCACGGTATTTC+CGG | + | chr4_2:69451614-69451633 | None:intergenic | 40.0% | |
| !! | CAAGCTTGCATACTGACTTC+TGG | + | chr4_2:69450712-69450731 | None:intergenic | 45.0% |
| GAGCAGTTGATCATTCCGAA+AGG | - | chr4_2:69451061-69451080 | Msa0618480:CDS | 45.0% | |
| AGCATACTCCATCGGTAACA+AGG | - | chr4_2:69451159-69451178 | Msa0618480:CDS | 45.0% | |
| AATACTCACCTTGCAGTACC+GGG | + | chr4_2:69451202-69451221 | None:intergenic | 45.0% | |
| TTGCCGCTCGCTATTACATT+AGG | - | chr4_2:69451242-69451261 | Msa0618480:intron | 45.0% | |
| AGCAAACTAGTAGCTTGAGC+CGG | + | chr4_2:69451374-69451393 | None:intergenic | 45.0% | |
| ACAGACATCACGGTATTTCC+GGG | + | chr4_2:69451613-69451632 | None:intergenic | 45.0% | |
| !! | CAAGCTTGCATACTGACTTC+TGG | + | chr4_2:69450712-69450731 | None:intergenic | 45.0% |
| GAGCAGTTGATCATTCCGAA+AGG | - | chr4_2:69451061-69451080 | Msa0618480:CDS | 45.0% | |
| AGCATACTCCATCGGTAACA+AGG | - | chr4_2:69451159-69451178 | Msa0618480:CDS | 45.0% | |
| AATACTCACCTTGCAGTACC+GGG | + | chr4_2:69451202-69451221 | None:intergenic | 45.0% | |
| TTGCCGCTCGCTATTACATT+AGG | - | chr4_2:69451242-69451261 | Msa0618480:intron | 45.0% | |
| AGCAAACTAGTAGCTTGAGC+CGG | + | chr4_2:69451374-69451393 | None:intergenic | 45.0% | |
| ACAGACATCACGGTATTTCC+GGG | + | chr4_2:69451613-69451632 | None:intergenic | 45.0% | |
| TACTGACGCTGTATTGCTCC+AGG | + | chr4_2:69450874-69450893 | None:intergenic | 50.0% | |
| TTCCCTCTAATGTGAGGTCC+AGG | + | chr4_2:69451130-69451149 | None:intergenic | 50.0% | |
| ! | TTTTACTGCCCGGTACTGCA+AGG | - | chr4_2:69451191-69451210 | Msa0618480:CDS | 50.0% |
| ! | CTAATTGCACCGGCAATCTG+AGG | + | chr4_2:69451340-69451359 | None:intergenic | 50.0% |
| CTCAGATTGCCGGTGCAATT+AGG | - | chr4_2:69451338-69451357 | Msa0618480:intron | 50.0% | |
| ! | GCAAGCCTCTTTTGCCAAAC+AGG | + | chr4_2:69451763-69451782 | None:intergenic | 50.0% |
| TACTGACGCTGTATTGCTCC+AGG | + | chr4_2:69450874-69450893 | None:intergenic | 50.0% | |
| TTCCCTCTAATGTGAGGTCC+AGG | + | chr4_2:69451130-69451149 | None:intergenic | 50.0% | |
| ! | TTTTACTGCCCGGTACTGCA+AGG | - | chr4_2:69451191-69451210 | Msa0618480:CDS | 50.0% |
| ! | CTAATTGCACCGGCAATCTG+AGG | + | chr4_2:69451340-69451359 | None:intergenic | 50.0% |
| CTCAGATTGCCGGTGCAATT+AGG | - | chr4_2:69451338-69451357 | Msa0618480:intron | 50.0% | |
| ! | GCAAGCCTCTTTTGCCAAAC+AGG | + | chr4_2:69451763-69451782 | None:intergenic | 50.0% |
| TGACGCTGTATTGCTCCAGG+AGG | + | chr4_2:69450871-69450890 | None:intergenic | 55.0% | |
| ACGCCTGGACCTCACATTAG+AGG | - | chr4_2:69451124-69451143 | Msa0618480:CDS | 55.0% | |
| CGCCTGGACCTCACATTAGA+GGG | - | chr4_2:69451125-69451144 | Msa0618480:CDS | 55.0% | |
| TGACGCTGTATTGCTCCAGG+AGG | + | chr4_2:69450871-69450890 | None:intergenic | 55.0% | |
| ACGCCTGGACCTCACATTAG+AGG | - | chr4_2:69451124-69451143 | Msa0618480:CDS | 55.0% | |
| CGCCTGGACCTCACATTAGA+GGG | - | chr4_2:69451125-69451144 | Msa0618480:CDS | 55.0% | |
| ! | AAGGCGTTCGTCGAACCTCC+TGG | - | chr4_2:69450853-69450872 | Msa0618480:three_prime_UTR | 60.0% |
| ! | AAGGCGTTCGTCGAACCTCC+TGG | - | chr4_2:69450853-69450872 | Msa0618480:three_prime_UTR | 60.0% |
| ! | GGCGTCGCGTTGACGAAGCT+CGG | + | chr4_2:69451109-69451128 | None:intergenic | 65.0% |
| AGCTTCGTCAACGCGACGCC+TGG | - | chr4_2:69451109-69451128 | Msa0618480:CDS | 65.0% | |
| ! | GGCGTCGCGTTGACGAAGCT+CGG | + | chr4_2:69451109-69451128 | None:intergenic | 65.0% |
| AGCTTCGTCAACGCGACGCC+TGG | - | chr4_2:69451109-69451128 | Msa0618480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 69450703 | 69451893 | 69450703 | ID=Msa0618480;Name=Msa0618480 |
| chr4_2 | mRNA | 69450703 | 69451893 | 69450703 | ID=Msa0618480-mRNA-1;Parent=Msa0618480;Name=Msa0618480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.5|0.75|1|1|4|268|173 |
| chr4_2 | exon | 69450703 | 69451253 | 69450703 | ID=Msa0618480-mRNA-1:exon:20077;Parent=Msa0618480-mRNA-1 |
| chr4_2 | exon | 69451384 | 69451552 | 69451384 | ID=Msa0618480-mRNA-1:exon:20076;Parent=Msa0618480-mRNA-1 |
| chr4_2 | exon | 69451683 | 69451740 | 69451683 | ID=Msa0618480-mRNA-1:exon:20075;Parent=Msa0618480-mRNA-1 |
| chr4_2 | exon | 69451882 | 69451893 | 69451882 | ID=Msa0618480-mRNA-1:exon:20074;Parent=Msa0618480-mRNA-1 |
| chr4_2 | CDS | 69451882 | 69451893 | 69451882 | ID=Msa0618480-mRNA-1:cds;Parent=Msa0618480-mRNA-1 |
| chr4_2 | CDS | 69451683 | 69451740 | 69451683 | ID=Msa0618480-mRNA-1:cds;Parent=Msa0618480-mRNA-1 |
| chr4_2 | CDS | 69451384 | 69451552 | 69451384 | ID=Msa0618480-mRNA-1:cds;Parent=Msa0618480-mRNA-1 |
| chr4_2 | CDS | 69450971 | 69451253 | 69450971 | ID=Msa0618480-mRNA-1:cds;Parent=Msa0618480-mRNA-1 |
| chr4_2 | three_prime_UTR | 69450703 | 69450970 | 69450703 | ID=Msa0618480-mRNA-1:three_prime_utr;Parent=Msa0618480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
