Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620770 | XP_024631076.2 | 89.781 | 274 | 16 | 3 | 1 | 267 | 1 | 269 | 1.77e-153 | 460 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620770 | G7I6F1 | 89.781 | 274 | 16 | 3 | 1 | 267 | 1 | 269 | 9.28e-154 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0477480 | Msa0620770 | 0.801588 | 8.387630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620770 | MtrunA17_Chr1g0149101 | 89.781 | 274 | 16 | 3 | 1 | 267 | 1 | 269 | 1.93e-157 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCCTTGACAGACTTTAT+TGG | 0.240331 | 4_2:-72523685 | None:intergenic |
| GAATGTCATTATTGAGTTAT+AGG | 0.256594 | 4_2:+72522493 | None:intergenic |
| AGCATCTGTCGATGAATATT+TGG | 0.259084 | 4_2:+72524078 | Msa0620770:CDS |
| ATGTTTCTGTGTCTGATAAA+TGG | 0.269432 | 4_2:-72523901 | None:intergenic |
| TTCTCCCCTTCAATTGTTGC+AGG | 0.272545 | 4_2:-72524289 | None:intergenic |
| TTCTTAATCTGAGAAGCTTC+TGG | 0.309298 | 4_2:-72522591 | None:intergenic |
| ATGCTGGAGGACTGCTGCTC+TGG | 0.318764 | 4_2:-72524060 | None:intergenic |
| CATGCGACACATGGGTTTCT+CGG | 0.326256 | 4_2:+72523709 | Msa0620770:CDS |
| TTTGTTGGAGGAATCTAATA+TGG | 0.332408 | 4_2:+72524234 | Msa0620770:CDS |
| AATTTATATTAAAATTTGAT+AGG | 0.342632 | 4_2:+72524173 | Msa0620770:CDS |
| AGTGTTGACAAATCTCAAAA+AGG | 0.377839 | 4_2:-72523656 | None:intergenic |
| AATGTCATTATTGAGTTATA+GGG | 0.399294 | 4_2:+72522494 | None:intergenic |
| AGTTCTTCTGCTATGTTACT+AGG | 0.425346 | 4_2:-72524205 | None:intergenic |
| GAAAATCCTGCAACAATTGA+AGG | 0.434474 | 4_2:+72524283 | Msa0620770:CDS |
| AATGATGTATACTTGAACTT+GGG | 0.435796 | 4_2:-72522688 | None:intergenic |
| CGAGTATTGTGTTTCACGGT+GGG | 0.450483 | 4_2:-72523779 | None:intergenic |
| TTTGTATGTATCAGGCTTGA+AGG | 0.461411 | 4_2:+72523875 | Msa0620770:intron |
| TGCTGGAGGACTGCTGCTCT+GGG | 0.462826 | 4_2:-72524059 | None:intergenic |
| AAATATTCATCGACAGATGC+TGG | 0.465549 | 4_2:-72524076 | None:intergenic |
| AGGATTGGTGATGGCGGTGG+CGG | 0.467054 | 4_2:-72522652 | None:intergenic |
| TGTTTCTGTGTCTGATAAAT+GGG | 0.471859 | 4_2:-72523900 | None:intergenic |
| TTTCCGAGTATTGTGTTTCA+CGG | 0.478137 | 4_2:-72523783 | None:intergenic |
| CTAATATGGTTCATCAAGAA+AGG | 0.485151 | 4_2:+72524248 | Msa0620770:CDS |
| ATAAACTTAGGCTCGAGTTC+AGG | 0.487680 | 4_2:+72524343 | Msa0620770:CDS |
| GTTTATAACAGTTGCTCAGA+AGG | 0.493717 | 4_2:+72524009 | Msa0620770:CDS |
| TTGCCATGATTCACTTCCCC+AGG | 0.497451 | 4_2:+72524390 | Msa0620770:CDS |
| TCTCAAGAGCACATAAACTT+AGG | 0.497807 | 4_2:+72524331 | Msa0620770:CDS |
| AAATGATGTATACTTGAACT+TGG | 0.498024 | 4_2:-72522689 | None:intergenic |
| TTGTTCCATTTGATCATCCA+CGG | 0.527357 | 4_2:-72524107 | None:intergenic |
| ATATTAGATTCCTCCAACAA+AGG | 0.530012 | 4_2:-72524232 | None:intergenic |
| AGAAGGATTGGTGATGGCGG+TGG | 0.534777 | 4_2:-72522655 | None:intergenic |
| CCACCGTGAAACACAATACT+CGG | 0.542340 | 4_2:+72523780 | Msa0620770:CDS |
| GTTATAAACACCTCTGGCAG+TGG | 0.544020 | 4_2:-72523995 | None:intergenic |
| TGATCCCGTGGATGATCAAA+TGG | 0.547491 | 4_2:+72524102 | Msa0620770:CDS |
| AAGGCTTCTCATGCGACACA+TGG | 0.551643 | 4_2:+72523700 | Msa0620770:CDS |
| TTAAAATTTGATAGGAGTGA+CGG | 0.554336 | 4_2:+72524181 | Msa0620770:CDS |
| GGGTATTCGTGTCATTCTTG+AGG | 0.561248 | 4_2:-72524039 | None:intergenic |
| AAAATCCTGCAACAATTGAA+GGG | 0.574303 | 4_2:+72524284 | Msa0620770:CDS |
| GATGTATACTTGAACTTGGG+GGG | 0.580200 | 4_2:-72522685 | None:intergenic |
| TTACCTGGGGAAGTGAATCA+TGG | 0.582239 | 4_2:-72524393 | None:intergenic |
| TGTTCCATTTGATCATCCAC+GGG | 0.583346 | 4_2:-72524106 | None:intergenic |
| CCGAGTATTGTGTTTCACGG+TGG | 0.583708 | 4_2:-72523780 | None:intergenic |
| AACGTAGGAGACAACAGTCT+TGG | 0.586213 | 4_2:+72523932 | Msa0620770:CDS |
| TTCTCAACAGCCACTGCCAG+AGG | 0.593800 | 4_2:+72523985 | Msa0620770:CDS |
| TGAATATTTGGCTGATCCCG+TGG | 0.596734 | 4_2:+72524090 | Msa0620770:CDS |
| GTCTCCAATAAAGTCTGTCA+AGG | 0.601153 | 4_2:+72523681 | Msa0620770:CDS |
| TTCATCAGAAGGATTGGTGA+TGG | 0.602391 | 4_2:-72522661 | None:intergenic |
| ATTGAGAGTTGAGGAGAGAG+AGG | 0.603653 | 4_2:-72522628 | None:intergenic |
| GCAACTGTTATAAACACCTC+TGG | 0.607058 | 4_2:-72524001 | None:intergenic |
| GTCATCATCACTAACTGAGT+CGG | 0.611386 | 4_2:+72524147 | Msa0620770:CDS |
| ATGATGTATACTTGAACTTG+GGG | 0.612101 | 4_2:-72522687 | None:intergenic |
| CGCGGAGACTTGAATACGAG+AGG | 0.617003 | 4_2:-72523745 | None:intergenic |
| AACAGTCTTGGTGAAGCTCG+TGG | 0.625856 | 4_2:+72523944 | Msa0620770:CDS |
| GTGAAACACAATACTCGGAA+AGG | 0.645194 | 4_2:+72523785 | Msa0620770:CDS |
| AAATCCTGCAACAATTGAAG+GGG | 0.646037 | 4_2:+72524285 | Msa0620770:CDS |
| AGGCTTCTCATGCGACACAT+GGG | 0.646230 | 4_2:+72523701 | Msa0620770:CDS |
| GAGTATTGTGTTTCACGGTG+GGG | 0.646389 | 4_2:-72523778 | None:intergenic |
| AATGGAACAATCTACTGATG+CGG | 0.649131 | 4_2:+72524120 | Msa0620770:CDS |
| ATCAGAAGGATTGGTGATGG+CGG | 0.649908 | 4_2:-72522658 | None:intergenic |
| GGTGGCGGCATTGAGAGTTG+AGG | 0.650716 | 4_2:-72522637 | None:intergenic |
| GAAACATCTCAATGTAACGT+AGG | 0.659012 | 4_2:+72523917 | Msa0620770:CDS |
| TGATGTATACTTGAACTTGG+GGG | 0.665983 | 4_2:-72522686 | None:intergenic |
| CGGTGGGGAGCACTGATACG+CGG | 0.675366 | 4_2:-72523763 | None:intergenic |
| GGAGACTTGAATACGAGAGG+CGG | 0.710854 | 4_2:-72523742 | None:intergenic |
| GTTATAGGGAAATCGAATCG+AGG | 0.718394 | 4_2:+72522508 | Msa0620770:five_prime_UTR |
| TATTCATCGACAGATGCTGG+AGG | 0.729564 | 4_2:-72524073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCACAAGAAAATAAAAAAA+AGG | + | chr4_2:72523064-72523083 | Msa0620770:intron | 15.0% |
| !! | TATATTTATAATGCTGATAT+AGG | + | chr4_2:72524439-72524458 | Msa0620770:intron | 15.0% |
| !! | ATATTTATAATGCTGATATA+GGG | + | chr4_2:72524440-72524459 | Msa0620770:intron | 15.0% |
| !! | TTCACAAGAAAATAAAAAAA+AGG | + | chr4_2:72523064-72523083 | Msa0620770:intron | 15.0% |
| !! | TATATTTATAATGCTGATAT+AGG | + | chr4_2:72524439-72524458 | Msa0620770:intron | 15.0% |
| !! | ATATTTATAATGCTGATATA+GGG | + | chr4_2:72524440-72524459 | Msa0620770:intron | 15.0% |
| !! | TCTTTACGATTATTATGTTA+TGG | + | chr4_2:72522791-72522810 | Msa0620770:intron | 20.0% |
| !! | TTTGCATCAAAATGAATATA+AGG | + | chr4_2:72522991-72523010 | Msa0620770:intron | 20.0% |
| !! | TATAAGGTTATCAATTAGAT+CGG | + | chr4_2:72523007-72523026 | Msa0620770:intron | 20.0% |
| !! | TGGAATTATATTTGTTTGAT+TGG | + | chr4_2:72523338-72523357 | Msa0620770:intron | 20.0% |
| !!! | ATTTTAATGCAAAAATGAGA+CGG | - | chr4_2:72523420-72523439 | None:intergenic | 20.0% |
| !! | CATTAAAATGCTTATCAATT+AGG | + | chr4_2:72523431-72523450 | Msa0620770:intron | 20.0% |
| !! | TCTTTACGATTATTATGTTA+TGG | + | chr4_2:72522791-72522810 | Msa0620770:intron | 20.0% |
| !! | TTTGCATCAAAATGAATATA+AGG | + | chr4_2:72522991-72523010 | Msa0620770:intron | 20.0% |
| !! | TATAAGGTTATCAATTAGAT+CGG | + | chr4_2:72523007-72523026 | Msa0620770:intron | 20.0% |
| !! | TGGAATTATATTTGTTTGAT+TGG | + | chr4_2:72523338-72523357 | Msa0620770:intron | 20.0% |
| !!! | ATTTTAATGCAAAAATGAGA+CGG | - | chr4_2:72523420-72523439 | None:intergenic | 20.0% |
| !! | CATTAAAATGCTTATCAATT+AGG | + | chr4_2:72523431-72523450 | Msa0620770:intron | 20.0% |
| ! | AATGATGTATACTTGAACTT+GGG | - | chr4_2:72522691-72522710 | None:intergenic | 25.0% |
| ! | AAATGATGTATACTTGAACT+TGG | - | chr4_2:72522692-72522711 | None:intergenic | 25.0% |
| ! | GGGTAGCATAATTAATTAAT+TGG | - | chr4_2:72522725-72522744 | None:intergenic | 25.0% |
| ! | AATGGAATGAAACAAAAAGT+AGG | - | chr4_2:72522945-72522964 | None:intergenic | 25.0% |
| ! | GTTCAAATTCTACTATGTTA+CGG | + | chr4_2:72523148-72523167 | Msa0620770:intron | 25.0% |
| ! | TACAATGCAATGTCAAATAA+CGG | - | chr4_2:72523176-72523195 | None:intergenic | 25.0% |
| ! | ACATCTCTAAACAAAAAAGA+CGG | - | chr4_2:72523506-72523525 | None:intergenic | 25.0% |
| ! | TGACAAAATTTGTATGTATC+AGG | + | chr4_2:72523867-72523886 | Msa0620770:intron | 25.0% |
| ! | TTAAAATTTGATAGGAGTGA+CGG | + | chr4_2:72524181-72524200 | Msa0620770:CDS | 25.0% |
| ! | AATGATGTATACTTGAACTT+GGG | - | chr4_2:72522691-72522710 | None:intergenic | 25.0% |
| ! | AAATGATGTATACTTGAACT+TGG | - | chr4_2:72522692-72522711 | None:intergenic | 25.0% |
| ! | GGGTAGCATAATTAATTAAT+TGG | - | chr4_2:72522725-72522744 | None:intergenic | 25.0% |
| ! | AATGGAATGAAACAAAAAGT+AGG | - | chr4_2:72522945-72522964 | None:intergenic | 25.0% |
| ! | GTTCAAATTCTACTATGTTA+CGG | + | chr4_2:72523148-72523167 | Msa0620770:intron | 25.0% |
| ! | TACAATGCAATGTCAAATAA+CGG | - | chr4_2:72523176-72523195 | None:intergenic | 25.0% |
| ! | ACATCTCTAAACAAAAAAGA+CGG | - | chr4_2:72523506-72523525 | None:intergenic | 25.0% |
| ! | TGACAAAATTTGTATGTATC+AGG | + | chr4_2:72523867-72523886 | Msa0620770:intron | 25.0% |
| ! | TTAAAATTTGATAGGAGTGA+CGG | + | chr4_2:72524181-72524200 | Msa0620770:CDS | 25.0% |
| ATGATGTATACTTGAACTTG+GGG | - | chr4_2:72522690-72522709 | None:intergenic | 30.0% | |
| TTTACTGTGTTAGACATGTT+TGG | + | chr4_2:72522899-72522918 | Msa0620770:intron | 30.0% | |
| ! | AGACAATGTTGTTTGATGAA+TGG | - | chr4_2:72522963-72522982 | None:intergenic | 30.0% |
| AGAATATTGTTCCAGAGATA+TGG | - | chr4_2:72523206-72523225 | None:intergenic | 30.0% | |
| AACAGTCAATTATCAAAGTG+CGG | - | chr4_2:72523304-72523323 | None:intergenic | 30.0% | |
| !! | AAATTCACTAGACTTGCTTT+TGG | + | chr4_2:72523364-72523383 | Msa0620770:intron | 30.0% |
| TGGGTTAATTAACATAAGAG+AGG | - | chr4_2:72523395-72523414 | None:intergenic | 30.0% | |
| !! | CATTTCTAGTATCACGAAAA+AGG | + | chr4_2:72523590-72523609 | Msa0620770:intron | 30.0% |
| ! | GTGTTGACAAATCTCAAAAA+GGG | - | chr4_2:72523658-72523677 | None:intergenic | 30.0% |
| !! | AGTGTTGACAAATCTCAAAA+AGG | - | chr4_2:72523659-72523678 | None:intergenic | 30.0% |
| ! | TGTTTCTGTGTCTGATAAAT+GGG | - | chr4_2:72523903-72523922 | None:intergenic | 30.0% |
| ! | ATGTTTCTGTGTCTGATAAA+TGG | - | chr4_2:72523904-72523923 | None:intergenic | 30.0% |
| ATATTAGATTCCTCCAACAA+AGG | - | chr4_2:72524235-72524254 | None:intergenic | 30.0% | |
| TTTGTTGGAGGAATCTAATA+TGG | + | chr4_2:72524234-72524253 | Msa0620770:CDS | 30.0% | |
| CTAATATGGTTCATCAAGAA+AGG | + | chr4_2:72524248-72524267 | Msa0620770:CDS | 30.0% | |
| AAAATCCTGCAACAATTGAA+GGG | + | chr4_2:72524284-72524303 | Msa0620770:CDS | 30.0% | |
| ATGATGTATACTTGAACTTG+GGG | - | chr4_2:72522690-72522709 | None:intergenic | 30.0% | |
| TTTACTGTGTTAGACATGTT+TGG | + | chr4_2:72522899-72522918 | Msa0620770:intron | 30.0% | |
| ! | AGACAATGTTGTTTGATGAA+TGG | - | chr4_2:72522963-72522982 | None:intergenic | 30.0% |
| AGAATATTGTTCCAGAGATA+TGG | - | chr4_2:72523206-72523225 | None:intergenic | 30.0% | |
| AACAGTCAATTATCAAAGTG+CGG | - | chr4_2:72523304-72523323 | None:intergenic | 30.0% | |
| !! | AAATTCACTAGACTTGCTTT+TGG | + | chr4_2:72523364-72523383 | Msa0620770:intron | 30.0% |
| TGGGTTAATTAACATAAGAG+AGG | - | chr4_2:72523395-72523414 | None:intergenic | 30.0% | |
| !! | CATTTCTAGTATCACGAAAA+AGG | + | chr4_2:72523590-72523609 | Msa0620770:intron | 30.0% |
| ! | GTGTTGACAAATCTCAAAAA+GGG | - | chr4_2:72523658-72523677 | None:intergenic | 30.0% |
| !! | AGTGTTGACAAATCTCAAAA+AGG | - | chr4_2:72523659-72523678 | None:intergenic | 30.0% |
| ! | TGTTTCTGTGTCTGATAAAT+GGG | - | chr4_2:72523903-72523922 | None:intergenic | 30.0% |
| ! | ATGTTTCTGTGTCTGATAAA+TGG | - | chr4_2:72523904-72523923 | None:intergenic | 30.0% |
| ATATTAGATTCCTCCAACAA+AGG | - | chr4_2:72524235-72524254 | None:intergenic | 30.0% | |
| TTTGTTGGAGGAATCTAATA+TGG | + | chr4_2:72524234-72524253 | Msa0620770:CDS | 30.0% | |
| CTAATATGGTTCATCAAGAA+AGG | + | chr4_2:72524248-72524267 | Msa0620770:CDS | 30.0% | |
| AAAATCCTGCAACAATTGAA+GGG | + | chr4_2:72524284-72524303 | Msa0620770:CDS | 30.0% | |
| TCTTCTTCTTCTTCTTCTGA+TGG | + | chr4_2:72522563-72522582 | Msa0620770:exon | 35.0% | |
| TTCTTAATCTGAGAAGCTTC+TGG | - | chr4_2:72522594-72522613 | None:intergenic | 35.0% | |
| TGATGTATACTTGAACTTGG+GGG | - | chr4_2:72522689-72522708 | None:intergenic | 35.0% | |
| ACTCTGTCTGTCTTTATGTT+TGG | + | chr4_2:72522841-72522860 | Msa0620770:intron | 35.0% | |
| TGATTCTTAGATCCTTAGAC+CGG | + | chr4_2:72523031-72523050 | Msa0620770:intron | 35.0% | |
| TCTTGTGAAAACTCAGTATC+CGG | - | chr4_2:72523053-72523072 | None:intergenic | 35.0% | |
| TGTACTGAATACCATATCTC+TGG | + | chr4_2:72523192-72523211 | Msa0620770:intron | 35.0% | |
| GCTGTGTTCATGTACTTAAA+AGG | + | chr4_2:72523253-72523272 | Msa0620770:intron | 35.0% | |
| ! | TTTCCGAGTATTGTGTTTCA+CGG | - | chr4_2:72523786-72523805 | None:intergenic | 35.0% |
| TTTGTATGTATCAGGCTTGA+AGG | + | chr4_2:72523875-72523894 | Msa0620770:intron | 35.0% | |
| GAAACATCTCAATGTAACGT+AGG | + | chr4_2:72523917-72523936 | Msa0620770:CDS | 35.0% | |
| GTTTATAACAGTTGCTCAGA+AGG | + | chr4_2:72524009-72524028 | Msa0620770:CDS | 35.0% | |
| AAATATTCATCGACAGATGC+TGG | - | chr4_2:72524079-72524098 | None:intergenic | 35.0% | |
| AGCATCTGTCGATGAATATT+TGG | + | chr4_2:72524078-72524097 | Msa0620770:CDS | 35.0% | |
| TTGTTCCATTTGATCATCCA+CGG | - | chr4_2:72524110-72524129 | None:intergenic | 35.0% | |
| AATGGAACAATCTACTGATG+CGG | + | chr4_2:72524120-72524139 | Msa0620770:CDS | 35.0% | |
| AGTTCTTCTGCTATGTTACT+AGG | - | chr4_2:72524208-72524227 | None:intergenic | 35.0% | |
| ! | AGAAGAACTTTTGCCTTTGT+TGG | + | chr4_2:72524219-72524238 | Msa0620770:CDS | 35.0% |
| GAAAATCCTGCAACAATTGA+AGG | + | chr4_2:72524283-72524302 | Msa0620770:CDS | 35.0% | |
| AAATCCTGCAACAATTGAAG+GGG | + | chr4_2:72524285-72524304 | Msa0620770:CDS | 35.0% | |
| ACAATTGAAGGGGAGAAAAA+TGG | + | chr4_2:72524295-72524314 | Msa0620770:CDS | 35.0% | |
| ! | TCTCAAGAGCACATAAACTT+AGG | + | chr4_2:72524331-72524350 | Msa0620770:CDS | 35.0% |
| TCTTCTTCTTCTTCTTCTGA+TGG | + | chr4_2:72522563-72522582 | Msa0620770:exon | 35.0% | |
| TTCTTAATCTGAGAAGCTTC+TGG | - | chr4_2:72522594-72522613 | None:intergenic | 35.0% | |
| TGATGTATACTTGAACTTGG+GGG | - | chr4_2:72522689-72522708 | None:intergenic | 35.0% | |
| ACTCTGTCTGTCTTTATGTT+TGG | + | chr4_2:72522841-72522860 | Msa0620770:intron | 35.0% | |
| TGATTCTTAGATCCTTAGAC+CGG | + | chr4_2:72523031-72523050 | Msa0620770:intron | 35.0% | |
| TCTTGTGAAAACTCAGTATC+CGG | - | chr4_2:72523053-72523072 | None:intergenic | 35.0% | |
| TGTACTGAATACCATATCTC+TGG | + | chr4_2:72523192-72523211 | Msa0620770:intron | 35.0% | |
| GCTGTGTTCATGTACTTAAA+AGG | + | chr4_2:72523253-72523272 | Msa0620770:intron | 35.0% | |
| ! | TTTCCGAGTATTGTGTTTCA+CGG | - | chr4_2:72523786-72523805 | None:intergenic | 35.0% |
| TTTGTATGTATCAGGCTTGA+AGG | + | chr4_2:72523875-72523894 | Msa0620770:intron | 35.0% | |
| GAAACATCTCAATGTAACGT+AGG | + | chr4_2:72523917-72523936 | Msa0620770:CDS | 35.0% | |
| GTTTATAACAGTTGCTCAGA+AGG | + | chr4_2:72524009-72524028 | Msa0620770:CDS | 35.0% | |
| AAATATTCATCGACAGATGC+TGG | - | chr4_2:72524079-72524098 | None:intergenic | 35.0% | |
| AGCATCTGTCGATGAATATT+TGG | + | chr4_2:72524078-72524097 | Msa0620770:CDS | 35.0% | |
| TTGTTCCATTTGATCATCCA+CGG | - | chr4_2:72524110-72524129 | None:intergenic | 35.0% | |
| AATGGAACAATCTACTGATG+CGG | + | chr4_2:72524120-72524139 | Msa0620770:CDS | 35.0% | |
| AGTTCTTCTGCTATGTTACT+AGG | - | chr4_2:72524208-72524227 | None:intergenic | 35.0% | |
| ! | AGAAGAACTTTTGCCTTTGT+TGG | + | chr4_2:72524219-72524238 | Msa0620770:CDS | 35.0% |
| GAAAATCCTGCAACAATTGA+AGG | + | chr4_2:72524283-72524302 | Msa0620770:CDS | 35.0% | |
| AAATCCTGCAACAATTGAAG+GGG | + | chr4_2:72524285-72524304 | Msa0620770:CDS | 35.0% | |
| ACAATTGAAGGGGAGAAAAA+TGG | + | chr4_2:72524295-72524314 | Msa0620770:CDS | 35.0% | |
| ! | TCTCAAGAGCACATAAACTT+AGG | + | chr4_2:72524331-72524350 | Msa0620770:CDS | 35.0% |
| GTTATAGGGAAATCGAATCG+AGG | + | chr4_2:72522508-72522527 | Msa0620770:five_prime_UTR | 40.0% | |
| ! | TTCATCAGAAGGATTGGTGA+TGG | - | chr4_2:72522664-72522683 | None:intergenic | 40.0% |
| GATGTATACTTGAACTTGGG+GGG | - | chr4_2:72522688-72522707 | None:intergenic | 40.0% | |
| TGTCAAGAACCCCAATCAAA+GGG | - | chr4_2:72522748-72522767 | None:intergenic | 40.0% | |
| AAAACTCAGTATCCGGTCTA+AGG | - | chr4_2:72523046-72523065 | None:intergenic | 40.0% | |
| TTAATCAATGTTGTCCGTCG+TGG | + | chr4_2:72523105-72523124 | Msa0620770:intron | 40.0% | |
| !! | CTATTTTTCGCAATCCACGA+CGG | - | chr4_2:72523122-72523141 | None:intergenic | 40.0% |
| AACACAGCACTGTCAAATAG+TGG | - | chr4_2:72523241-72523260 | None:intergenic | 40.0% | |
| ! | ACTGTTGTGAGAGACTTGTT+TGG | + | chr4_2:72523318-72523337 | Msa0620770:intron | 40.0% |
| ATGCAAAAATGAGACGGTGT+GGG | - | chr4_2:72523414-72523433 | None:intergenic | 40.0% | |
| AATGCAAAAATGAGACGGTG+TGG | - | chr4_2:72523415-72523434 | None:intergenic | 40.0% | |
| ATTAGGCGTATGTGCATTGT+CGG | + | chr4_2:72523448-72523467 | Msa0620770:intron | 40.0% | |
| CTTGTCGTCTTCTTCATTTC+AGG | + | chr4_2:72523627-72523646 | Msa0620770:intron | 40.0% | |
| GTCTCCAATAAAGTCTGTCA+AGG | + | chr4_2:72523681-72523700 | Msa0620770:CDS | 40.0% | |
| GAAGCCTTGACAGACTTTAT+TGG | - | chr4_2:72523688-72523707 | None:intergenic | 40.0% | |
| GTGAAACACAATACTCGGAA+AGG | + | chr4_2:72523785-72523804 | Msa0620770:CDS | 40.0% | |
| GCAACTGTTATAAACACCTC+TGG | - | chr4_2:72524004-72524023 | None:intergenic | 40.0% | |
| TGTTCCATTTGATCATCCAC+GGG | - | chr4_2:72524109-72524128 | None:intergenic | 40.0% | |
| GTCATCATCACTAACTGAGT+CGG | + | chr4_2:72524147-72524166 | Msa0620770:CDS | 40.0% | |
| ! | AGAACTTTTGCCTTTGTTGG+AGG | + | chr4_2:72524222-72524241 | Msa0620770:CDS | 40.0% |
| ! | GGAGAAAAATGGTGCTGAAT+TGG | + | chr4_2:72524306-72524325 | Msa0620770:CDS | 40.0% |
| ATAAACTTAGGCTCGAGTTC+AGG | + | chr4_2:72524343-72524362 | Msa0620770:CDS | 40.0% | |
| GTTATAGGGAAATCGAATCG+AGG | + | chr4_2:72522508-72522527 | Msa0620770:five_prime_UTR | 40.0% | |
| ! | TTCATCAGAAGGATTGGTGA+TGG | - | chr4_2:72522664-72522683 | None:intergenic | 40.0% |
| GATGTATACTTGAACTTGGG+GGG | - | chr4_2:72522688-72522707 | None:intergenic | 40.0% | |
| TGTCAAGAACCCCAATCAAA+GGG | - | chr4_2:72522748-72522767 | None:intergenic | 40.0% | |
| AAAACTCAGTATCCGGTCTA+AGG | - | chr4_2:72523046-72523065 | None:intergenic | 40.0% | |
| TTAATCAATGTTGTCCGTCG+TGG | + | chr4_2:72523105-72523124 | Msa0620770:intron | 40.0% | |
| !! | CTATTTTTCGCAATCCACGA+CGG | - | chr4_2:72523122-72523141 | None:intergenic | 40.0% |
| AACACAGCACTGTCAAATAG+TGG | - | chr4_2:72523241-72523260 | None:intergenic | 40.0% | |
| ! | ACTGTTGTGAGAGACTTGTT+TGG | + | chr4_2:72523318-72523337 | Msa0620770:intron | 40.0% |
| ATGCAAAAATGAGACGGTGT+GGG | - | chr4_2:72523414-72523433 | None:intergenic | 40.0% | |
| AATGCAAAAATGAGACGGTG+TGG | - | chr4_2:72523415-72523434 | None:intergenic | 40.0% | |
| ATTAGGCGTATGTGCATTGT+CGG | + | chr4_2:72523448-72523467 | Msa0620770:intron | 40.0% | |
| CTTGTCGTCTTCTTCATTTC+AGG | + | chr4_2:72523627-72523646 | Msa0620770:intron | 40.0% | |
| GTCTCCAATAAAGTCTGTCA+AGG | + | chr4_2:72523681-72523700 | Msa0620770:CDS | 40.0% | |
| GAAGCCTTGACAGACTTTAT+TGG | - | chr4_2:72523688-72523707 | None:intergenic | 40.0% | |
| GTGAAACACAATACTCGGAA+AGG | + | chr4_2:72523785-72523804 | Msa0620770:CDS | 40.0% | |
| GCAACTGTTATAAACACCTC+TGG | - | chr4_2:72524004-72524023 | None:intergenic | 40.0% | |
| TGTTCCATTTGATCATCCAC+GGG | - | chr4_2:72524109-72524128 | None:intergenic | 40.0% | |
| GTCATCATCACTAACTGAGT+CGG | + | chr4_2:72524147-72524166 | Msa0620770:CDS | 40.0% | |
| ! | AGAACTTTTGCCTTTGTTGG+AGG | + | chr4_2:72524222-72524241 | Msa0620770:CDS | 40.0% |
| ! | GGAGAAAAATGGTGCTGAAT+TGG | + | chr4_2:72524306-72524325 | Msa0620770:CDS | 40.0% |
| ATAAACTTAGGCTCGAGTTC+AGG | + | chr4_2:72524343-72524362 | Msa0620770:CDS | 40.0% | |
| ATTGAGAGTTGAGGAGAGAG+AGG | - | chr4_2:72522631-72522650 | None:intergenic | 45.0% | |
| !! | ATCAGAAGGATTGGTGATGG+CGG | - | chr4_2:72522661-72522680 | None:intergenic | 45.0% |
| TTATGCTACCCCCCTTTGAT+TGG | + | chr4_2:72522734-72522753 | Msa0620770:intron | 45.0% | |
| TATGCTACCCCCCTTTGATT+GGG | + | chr4_2:72522735-72522754 | Msa0620770:intron | 45.0% | |
| TCAAGAACCCCAATCAAAGG+GGG | - | chr4_2:72522746-72522765 | None:intergenic | 45.0% | |
| GTCAAGAACCCCAATCAAAG+GGG | - | chr4_2:72522747-72522766 | None:intergenic | 45.0% | |
| GTGTCAAGAACCCCAATCAA+AGG | - | chr4_2:72522749-72522768 | None:intergenic | 45.0% | |
| ! | TTTTACGCACTTGTGCGTTG+TGG | + | chr4_2:72523276-72523295 | Msa0620770:intron | 45.0% |
| ! | GAGTATTGTGTTTCACGGTG+GGG | - | chr4_2:72523781-72523800 | None:intergenic | 45.0% |
| ! | CGAGTATTGTGTTTCACGGT+GGG | - | chr4_2:72523782-72523801 | None:intergenic | 45.0% |
| CCACCGTGAAACACAATACT+CGG | + | chr4_2:72523780-72523799 | Msa0620770:CDS | 45.0% | |
| AACGTAGGAGACAACAGTCT+TGG | + | chr4_2:72523932-72523951 | Msa0620770:CDS | 45.0% | |
| GTTATAAACACCTCTGGCAG+TGG | - | chr4_2:72523998-72524017 | None:intergenic | 45.0% | |
| ! | GGGTATTCGTGTCATTCTTG+AGG | - | chr4_2:72524042-72524061 | None:intergenic | 45.0% |
| TATTCATCGACAGATGCTGG+AGG | - | chr4_2:72524076-72524095 | None:intergenic | 45.0% | |
| TGAATATTTGGCTGATCCCG+TGG | + | chr4_2:72524090-72524109 | Msa0620770:CDS | 45.0% | |
| TGATCCCGTGGATGATCAAA+TGG | + | chr4_2:72524102-72524121 | Msa0620770:CDS | 45.0% | |
| TTCTCCCCTTCAATTGTTGC+AGG | - | chr4_2:72524292-72524311 | None:intergenic | 45.0% | |
| TTACCTGGGGAAGTGAATCA+TGG | - | chr4_2:72524396-72524415 | None:intergenic | 45.0% | |
| AGCAAGAGCTTAGTTACCTG+GGG | - | chr4_2:72524409-72524428 | None:intergenic | 45.0% | |
| CAGCAAGAGCTTAGTTACCT+GGG | - | chr4_2:72524410-72524429 | None:intergenic | 45.0% | |
| ACAGCAAGAGCTTAGTTACC+TGG | - | chr4_2:72524411-72524430 | None:intergenic | 45.0% | |
| ATTGAGAGTTGAGGAGAGAG+AGG | - | chr4_2:72522631-72522650 | None:intergenic | 45.0% | |
| !! | ATCAGAAGGATTGGTGATGG+CGG | - | chr4_2:72522661-72522680 | None:intergenic | 45.0% |
| TTATGCTACCCCCCTTTGAT+TGG | + | chr4_2:72522734-72522753 | Msa0620770:intron | 45.0% | |
| TATGCTACCCCCCTTTGATT+GGG | + | chr4_2:72522735-72522754 | Msa0620770:intron | 45.0% | |
| TCAAGAACCCCAATCAAAGG+GGG | - | chr4_2:72522746-72522765 | None:intergenic | 45.0% | |
| GTCAAGAACCCCAATCAAAG+GGG | - | chr4_2:72522747-72522766 | None:intergenic | 45.0% | |
| GTGTCAAGAACCCCAATCAA+AGG | - | chr4_2:72522749-72522768 | None:intergenic | 45.0% | |
| ! | TTTTACGCACTTGTGCGTTG+TGG | + | chr4_2:72523276-72523295 | Msa0620770:intron | 45.0% |
| ! | GAGTATTGTGTTTCACGGTG+GGG | - | chr4_2:72523781-72523800 | None:intergenic | 45.0% |
| ! | CGAGTATTGTGTTTCACGGT+GGG | - | chr4_2:72523782-72523801 | None:intergenic | 45.0% |
| CCACCGTGAAACACAATACT+CGG | + | chr4_2:72523780-72523799 | Msa0620770:CDS | 45.0% | |
| AACGTAGGAGACAACAGTCT+TGG | + | chr4_2:72523932-72523951 | Msa0620770:CDS | 45.0% | |
| GTTATAAACACCTCTGGCAG+TGG | - | chr4_2:72523998-72524017 | None:intergenic | 45.0% | |
| ! | GGGTATTCGTGTCATTCTTG+AGG | - | chr4_2:72524042-72524061 | None:intergenic | 45.0% |
| TATTCATCGACAGATGCTGG+AGG | - | chr4_2:72524076-72524095 | None:intergenic | 45.0% | |
| TGAATATTTGGCTGATCCCG+TGG | + | chr4_2:72524090-72524109 | Msa0620770:CDS | 45.0% | |
| TGATCCCGTGGATGATCAAA+TGG | + | chr4_2:72524102-72524121 | Msa0620770:CDS | 45.0% | |
| TTCTCCCCTTCAATTGTTGC+AGG | - | chr4_2:72524292-72524311 | None:intergenic | 45.0% | |
| TTACCTGGGGAAGTGAATCA+TGG | - | chr4_2:72524396-72524415 | None:intergenic | 45.0% | |
| AGCAAGAGCTTAGTTACCTG+GGG | - | chr4_2:72524409-72524428 | None:intergenic | 45.0% | |
| CAGCAAGAGCTTAGTTACCT+GGG | - | chr4_2:72524410-72524429 | None:intergenic | 45.0% | |
| ACAGCAAGAGCTTAGTTACC+TGG | - | chr4_2:72524411-72524430 | None:intergenic | 45.0% | |
| !! | AATTTATATTAAAATTTGAT+AGG | + | chr4_2:72524173-72524192 | Msa0620770:CDS | 5.0% |
| !! | AATTTATATTAAAATTTGAT+AGG | + | chr4_2:72524173-72524192 | Msa0620770:CDS | 5.0% |
| GGGGGATTCATCAGAAGGAT+TGG | - | chr4_2:72522670-72522689 | None:intergenic | 50.0% | |
| ACTTGGGGGGATTCATCAGA+AGG | - | chr4_2:72522675-72522694 | None:intergenic | 50.0% | |
| ATGCTACCCCCCTTTGATTG+GGG | + | chr4_2:72522736-72522755 | Msa0620770:intron | 50.0% | |
| CAAGAACCCCAATCAAAGGG+GGG | - | chr4_2:72522745-72522764 | None:intergenic | 50.0% | |
| AAGGCTTCTCATGCGACACA+TGG | + | chr4_2:72523700-72523719 | Msa0620770:CDS | 50.0% | |
| AGGCTTCTCATGCGACACAT+GGG | + | chr4_2:72523701-72523720 | Msa0620770:CDS | 50.0% | |
| CATGCGACACATGGGTTTCT+CGG | + | chr4_2:72523709-72523728 | Msa0620770:CDS | 50.0% | |
| GGAGACTTGAATACGAGAGG+CGG | - | chr4_2:72523745-72523764 | None:intergenic | 50.0% | |
| ! | CCGAGTATTGTGTTTCACGG+TGG | - | chr4_2:72523783-72523802 | None:intergenic | 50.0% |
| AACAGTCTTGGTGAAGCTCG+TGG | + | chr4_2:72523944-72523963 | Msa0620770:CDS | 50.0% | |
| TTGCCATGATTCACTTCCCC+AGG | + | chr4_2:72524390-72524409 | Msa0620770:CDS | 50.0% | |
| GTGTGAGCTAGATGTCCTCT+AGG | + | chr4_2:72524488-72524507 | Msa0620770:intron | 50.0% | |
| GGGGGATTCATCAGAAGGAT+TGG | - | chr4_2:72522670-72522689 | None:intergenic | 50.0% | |
| ACTTGGGGGGATTCATCAGA+AGG | - | chr4_2:72522675-72522694 | None:intergenic | 50.0% | |
| ATGCTACCCCCCTTTGATTG+GGG | + | chr4_2:72522736-72522755 | Msa0620770:intron | 50.0% | |
| CAAGAACCCCAATCAAAGGG+GGG | - | chr4_2:72522745-72522764 | None:intergenic | 50.0% | |
| AAGGCTTCTCATGCGACACA+TGG | + | chr4_2:72523700-72523719 | Msa0620770:CDS | 50.0% | |
| AGGCTTCTCATGCGACACAT+GGG | + | chr4_2:72523701-72523720 | Msa0620770:CDS | 50.0% | |
| CATGCGACACATGGGTTTCT+CGG | + | chr4_2:72523709-72523728 | Msa0620770:CDS | 50.0% | |
| GGAGACTTGAATACGAGAGG+CGG | - | chr4_2:72523745-72523764 | None:intergenic | 50.0% | |
| ! | CCGAGTATTGTGTTTCACGG+TGG | - | chr4_2:72523783-72523802 | None:intergenic | 50.0% |
| AACAGTCTTGGTGAAGCTCG+TGG | + | chr4_2:72523944-72523963 | Msa0620770:CDS | 50.0% | |
| TTGCCATGATTCACTTCCCC+AGG | + | chr4_2:72524390-72524409 | Msa0620770:CDS | 50.0% | |
| !! | AGAAGGATTGGTGATGGCGG+TGG | - | chr4_2:72522658-72522677 | None:intergenic | 55.0% |
| GCGTATGTGCATTGTCGGAC+TGG | + | chr4_2:72523453-72523472 | Msa0620770:intron | 55.0% | |
| CGCGGAGACTTGAATACGAG+AGG | - | chr4_2:72523748-72523767 | None:intergenic | 55.0% | |
| TTCTCAACAGCCACTGCCAG+AGG | + | chr4_2:72523985-72524004 | Msa0620770:CDS | 55.0% | |
| !! | AGAAGGATTGGTGATGGCGG+TGG | - | chr4_2:72522658-72522677 | None:intergenic | 55.0% |
| GCGTATGTGCATTGTCGGAC+TGG | + | chr4_2:72523453-72523472 | Msa0620770:intron | 55.0% | |
| CGCGGAGACTTGAATACGAG+AGG | - | chr4_2:72523748-72523767 | None:intergenic | 55.0% | |
| TTCTCAACAGCCACTGCCAG+AGG | + | chr4_2:72523985-72524004 | Msa0620770:CDS | 55.0% | |
| ! | GGTGGCGGCATTGAGAGTTG+AGG | - | chr4_2:72522640-72522659 | None:intergenic | 60.0% |
| !! | AGGATTGGTGATGGCGGTGG+CGG | - | chr4_2:72522655-72522674 | None:intergenic | 60.0% |
| TGCTGGAGGACTGCTGCTCT+GGG | - | chr4_2:72524062-72524081 | None:intergenic | 60.0% | |
| ATGCTGGAGGACTGCTGCTC+TGG | - | chr4_2:72524063-72524082 | None:intergenic | 60.0% | |
| ! | GGTGGCGGCATTGAGAGTTG+AGG | - | chr4_2:72522640-72522659 | None:intergenic | 60.0% |
| !! | AGGATTGGTGATGGCGGTGG+CGG | - | chr4_2:72522655-72522674 | None:intergenic | 60.0% |
| TGCTGGAGGACTGCTGCTCT+GGG | - | chr4_2:72524062-72524081 | None:intergenic | 60.0% | |
| ATGCTGGAGGACTGCTGCTC+TGG | - | chr4_2:72524063-72524082 | None:intergenic | 60.0% | |
| !! | CGGTGGGGAGCACTGATACG+CGG | - | chr4_2:72523766-72523785 | None:intergenic | 65.0% |
| !! | CGGTGGGGAGCACTGATACG+CGG | - | chr4_2:72523766-72523785 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 72522497 | 72524509 | 72522497 | ID=Msa0620770;Name=Msa0620770 |
| chr4_2 | mRNA | 72522497 | 72524509 | 72522497 | ID=Msa0620770-mRNA-1;Parent=Msa0620770;Name=Msa0620770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=85|0.66|0.5|0.75|1|1|4|0|272 |
| chr4_2 | exon | 72522497 | 72522698 | 72522497 | ID=Msa0620770-mRNA-1:exon:21575;Parent=Msa0620770-mRNA-1 |
| chr4_2 | exon | 72523649 | 72523806 | 72523649 | ID=Msa0620770-mRNA-1:exon:21576;Parent=Msa0620770-mRNA-1 |
| chr4_2 | exon | 72523889 | 72524411 | 72523889 | ID=Msa0620770-mRNA-1:exon:21577;Parent=Msa0620770-mRNA-1 |
| chr4_2 | exon | 72524489 | 72524509 | 72524489 | ID=Msa0620770-mRNA-1:exon:21578;Parent=Msa0620770-mRNA-1 |
| chr4_2 | five_prime_UTR | 72522497 | 72522581 | 72522497 | ID=Msa0620770-mRNA-1:five_prime_utr;Parent=Msa0620770-mRNA-1 |
| chr4_2 | CDS | 72522582 | 72522698 | 72522582 | ID=Msa0620770-mRNA-1:cds;Parent=Msa0620770-mRNA-1 |
| chr4_2 | CDS | 72523649 | 72523806 | 72523649 | ID=Msa0620770-mRNA-1:cds;Parent=Msa0620770-mRNA-1 |
| chr4_2 | CDS | 72523889 | 72524411 | 72523889 | ID=Msa0620770-mRNA-1:cds;Parent=Msa0620770-mRNA-1 |
| chr4_2 | CDS | 72524489 | 72524509 | 72524489 | ID=Msa0620770-mRNA-1:cds;Parent=Msa0620770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
