Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0622000 | NP_001365649.1 | 98.925 | 186 | 2 | 0 | 4 | 189 | 2 | 187 | 8.84e-129 | 369 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0622000 | sp|O65729|RL18_CICAR | 86.957 | 184 | 23 | 1 | 6 | 189 | 1 | 183 | 3.57e-113 | 322 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0622000 | Msa0835190 | 0.803622 | 3.192887e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0622000 | MtrunA17_Chr7g0272381 | 98.925 | 186 | 2 | 0 | 4 | 189 | 2 | 187 | 8.13e-133 | 369 |
Msa0622000 | MtrunA17_Chr1g0192271 | 86.559 | 186 | 25 | 0 | 4 | 189 | 2 | 187 | 5.83e-117 | 329 |
Msa0622000 | MtrunA17_Chr7g0269451 | 86.631 | 187 | 24 | 1 | 4 | 189 | 2 | 188 | 1.10e-114 | 323 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0622000 | AT5G27850.1 | 81.720 | 186 | 34 | 0 | 4 | 189 | 2 | 187 | 1.47e-111 | 316 |
Msa0622000 | AT3G05590.1 | 81.183 | 186 | 35 | 0 | 4 | 189 | 2 | 187 | 6.40e-111 | 314 |
Msa0622000 | AT2G47570.1 | 75.269 | 186 | 45 | 1 | 5 | 189 | 1 | 186 | 5.51e-101 | 289 |
Msa0622000 | AT3G05590.3 | 80.597 | 134 | 26 | 0 | 56 | 189 | 1 | 134 | 1.89e-78 | 230 |
Msa0622000 | AT3G05590.2 | 80.597 | 134 | 26 | 0 | 56 | 189 | 1 | 134 | 1.89e-78 | 230 |
Msa0622000 | AT5G27850.2 | 79.851 | 134 | 27 | 0 | 56 | 189 | 1 | 134 | 3.57e-77 | 227 |
Find 77 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGGAAGAGTAGAGGATTT+AGG | 0.132509 | 4_2:+74374232 | Msa0622000:CDS |
GAGGAAGAGTAGAGGATTTA+GGG | 0.159004 | 4_2:+74374233 | Msa0622000:CDS |
AAAACTTAATACCCATTTAT+TGG | 0.197066 | 4_2:-74374418 | None:intergenic |
ACTGCTTCCCTAGCATTCTT+TGG | 0.206364 | 4_2:-74374117 | None:intergenic |
ATCAACTTTGACAGAGAAAT+TGG | 0.227766 | 4_2:-74373355 | None:intergenic |
TAGCATTCTTTGGGCCTCTT+AGG | 0.233236 | 4_2:-74374107 | None:intergenic |
ATTTGATGTCTGCCAATAAA+TGG | 0.237190 | 4_2:+74374406 | Msa0622000:three_prime_UTR |
AGGTAGATATCATTGGATTT+AGG | 0.281327 | 4_2:-74371941 | None:intergenic |
GGTAAAATTGGTGTCGTTGT+GGG | 0.314974 | 4_2:+74373510 | Msa0622000:CDS |
CTGCTTCCCTAGCATTCTTT+GGG | 0.325698 | 4_2:-74374116 | None:intergenic |
CTTCCCTTTGATCTTACATA+AGG | 0.356102 | 4_2:-74374186 | None:intergenic |
AATAACGTGTTGCTTAGATT+TGG | 0.356315 | 4_2:+74374544 | Msa0622000:three_prime_UTR |
GGGCTGTAACAGATGATATC+AGG | 0.365645 | 4_2:+74373532 | Msa0622000:CDS |
TATATCGCTTCCTTGTTAGA+AGG | 0.375930 | 4_2:+74373269 | Msa0622000:CDS |
GTTATGCAGGACGGTAAAAT+TGG | 0.388471 | 4_2:+74373498 | Msa0622000:intron |
GGATTTAGGTTCGGTTCGTT+TGG | 0.400306 | 4_2:-74371927 | None:intergenic |
TTACATTCGCCAACCATGAT+TGG | 0.408818 | 4_2:-74374498 | None:intergenic |
GAGCTTGAGGTAGATATCAT+TGG | 0.411467 | 4_2:-74371948 | None:intergenic |
CTTTGATCTTACATAAGGCT+TGG | 0.418522 | 4_2:-74374181 | None:intergenic |
CAGGGGATCGATCTCAAAGC+TGG | 0.420599 | 4_2:+74371887 | Msa0622000:intron |
GATATCATTGGATTTAGGTT+CGG | 0.438911 | 4_2:-74371936 | None:intergenic |
TCTACTCTTCCTCTTTCCTC+TGG | 0.440211 | 4_2:-74374223 | None:intergenic |
TCTGTCCAAGGGGAGCTCTA+AGG | 0.443443 | 4_2:-74373662 | None:intergenic |
GGGCAAGTTGATCAAATGTT+AGG | 0.445307 | 4_2:-74373641 | None:intergenic |
CGGTAAAATTGGTGTCGTTG+TGG | 0.446137 | 4_2:+74373509 | Msa0622000:CDS |
TTGAGATTGTTTGTTATACA+TGG | 0.458757 | 4_2:+74374366 | Msa0622000:three_prime_UTR |
ATGTTATATTTATTGTTACA+TGG | 0.459722 | 4_2:+74374332 | Msa0622000:three_prime_UTR |
GTGCCGTCTCTGTGAACCTA+AGG | 0.461512 | 4_2:-74373587 | None:intergenic |
AAGCCTTATGTAAGATCAAA+GGG | 0.467688 | 4_2:+74374183 | Msa0622000:CDS |
AAACACTTTGGTCGTGCTCC+TGG | 0.468460 | 4_2:+74374141 | Msa0622000:CDS |
CTGTCCAAGGGGAGCTCTAA+GGG | 0.473811 | 4_2:-74373661 | None:intergenic |
GTAAAATTGGTGTCGTTGTG+GGG | 0.476743 | 4_2:+74373511 | Msa0622000:CDS |
CATTCTTTGGGCCTCTTAGG+AGG | 0.481833 | 4_2:-74374104 | None:intergenic |
TAAGAGGCCCAAAGAATGCT+AGG | 0.491610 | 4_2:+74374109 | Msa0622000:CDS |
CAAGCCTTATGTAAGATCAA+AGG | 0.498391 | 4_2:+74374182 | Msa0622000:CDS |
TGAATTCAGGTCCTCCTAAG+AGG | 0.506122 | 4_2:+74374093 | Msa0622000:intron |
AAGAGAAGGCCAGAGGAAAG+AGG | 0.507573 | 4_2:+74374214 | Msa0622000:CDS |
GAATGGCTGTGTGGCACACC+AGG | 0.520029 | 4_2:-74374159 | None:intergenic |
GAAGTATCAAAACTGTAGAA+AGG | 0.522174 | 4_2:-74374281 | None:intergenic |
CTCATACCGTGTTCTGTCCA+AGG | 0.524348 | 4_2:-74373674 | None:intergenic |
ATCTTACATAAGGCTTGGAA+TGG | 0.527336 | 4_2:-74374176 | None:intergenic |
TGCCCTTAGGTTCACAGAGA+CGG | 0.538036 | 4_2:+74373584 | Msa0622000:CDS |
TTTGATGTCTGCCAATAAAT+GGG | 0.547480 | 4_2:+74374407 | Msa0622000:three_prime_UTR |
AAAGTTGATCGAGTACATGA+AGG | 0.551641 | 4_2:+74373369 | Msa0622000:CDS |
AAGTTGATCGAGTACATGAA+GGG | 0.557741 | 4_2:+74373370 | Msa0622000:CDS |
TTTAGTTATCTACTTAGAGA+GGG | 0.568102 | 4_2:+74374439 | Msa0622000:three_prime_UTR |
GGACCTTGACGAGGAGCTTG+AGG | 0.569815 | 4_2:-74371961 | None:intergenic |
AGGGGATCGATCTCAAAGCT+GGG | 0.574140 | 4_2:+74371888 | Msa0622000:intron |
CTTGCCCTTAGAGCTCCCCT+TGG | 0.575267 | 4_2:+74373657 | Msa0622000:CDS |
TGCTGTCAGTCCTTCTAACA+AGG | 0.579764 | 4_2:-74373279 | None:intergenic |
GGCTGTAACAGATGATATCA+GGG | 0.589836 | 4_2:+74373533 | Msa0622000:CDS |
AGGGAAGCAGTAAAACACTT+TGG | 0.592083 | 4_2:+74374129 | Msa0622000:CDS |
TCATACCGTGTTCTGTCCAA+GGG | 0.595030 | 4_2:-74373673 | None:intergenic |
CAAGCGCTTGTTCATGAGCA+AGG | 0.595633 | 4_2:+74373321 | Msa0622000:CDS |
AACTTTGACAGAGAAATTGG+AGG | 0.595797 | 4_2:-74373352 | None:intergenic |
AAAGGGAAGGAAACAAGAGA+AGG | 0.607313 | 4_2:+74374200 | Msa0622000:CDS |
CGTGCAAGAATAGAGAAGGC+GGG | 0.608166 | 4_2:+74373609 | Msa0622000:CDS |
TTGACAGAGAAATTGGAGGT+CGG | 0.608358 | 4_2:-74373348 | None:intergenic |
AGCTCCCCTTGGACAGAACA+CGG | 0.610780 | 4_2:+74373668 | Msa0622000:CDS |
TGCCGTCTCTGTGAACCTAA+GGG | 0.611665 | 4_2:-74373586 | None:intergenic |
CTACCTCAAGCTCCTCGTCA+AGG | 0.612377 | 4_2:+74371958 | Msa0622000:CDS |
TAAAATTGGTGTCGTTGTGG+GGG | 0.613763 | 4_2:+74373512 | Msa0622000:CDS |
CTTATGTAAGATCAAAGGGA+AGG | 0.618781 | 4_2:+74374187 | Msa0622000:CDS |
GGCACGTGCAAGAATAGAGA+AGG | 0.623253 | 4_2:+74373605 | Msa0622000:CDS |
AGGAAACAAGAGAAGGCCAG+AGG | 0.627136 | 4_2:+74374207 | Msa0622000:CDS |
AGAGGAAAGAGGAAGAGTAG+AGG | 0.627781 | 4_2:+74374225 | Msa0622000:CDS |
AAGAGGCCCAAAGAATGCTA+GGG | 0.636036 | 4_2:+74374110 | Msa0622000:CDS |
GGGGATCGATCTCAAAGCTG+GGG | 0.637375 | 4_2:+74371889 | Msa0622000:intron |
AAATGGAATGGACCTTGACG+AGG | 0.641410 | 4_2:-74371970 | None:intergenic |
AGTTGATCGAGTACATGAAG+GGG | 0.649783 | 4_2:+74373371 | Msa0622000:CDS |
GATCGAGTACATGAAGGGGA+AGG | 0.663524 | 4_2:+74373375 | Msa0622000:CDS |
ACGTGCAAGAATAGAGAAGG+CGG | 0.663924 | 4_2:+74373608 | Msa0622000:CDS |
GCAAGAATAGAGAAGGCGGG+TGG | 0.710757 | 4_2:+74373612 | Msa0622000:CDS |
CATACCGTGTTCTGTCCAAG+GGG | 0.721874 | 4_2:-74373672 | None:intergenic |
GGGATCGATCTCAAAGCTGG+GGG | 0.738953 | 4_2:+74371890 | Msa0622000:CDS |
GACTGACAGCAATTTCAATG+CGG | 0.745385 | 4_2:+74373291 | Msa0622000:CDS |
TAAGGCTTGGAATGGCTGTG+TGG | 0.750805 | 4_2:-74374168 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTATTTTTTCGATTTTTT+CGG | - | chr4_2:74371028-74371047 | None:intergenic | 10.0% |
!! | ATACGATAAAATAAAAATTA+TGG | - | chr4_2:74372253-74372272 | None:intergenic | 10.0% |
!! | TTTGAATAATAATCAAAGAA+GGG | + | chr4_2:74370877-74370896 | Msa0622000:intron | 15.0% |
!! | TATATTGGTATAGATTATAA+TGG | - | chr4_2:74371074-74371093 | None:intergenic | 15.0% |
!! | ACATTATCTCATTTATATAT+TGG | - | chr4_2:74371089-74371108 | None:intergenic | 15.0% |
!!! | ATTTTATAAGACATAGAAAA+TGG | - | chr4_2:74371990-74372009 | None:intergenic | 15.0% |
!! | AGAATGCAAATTATTTATAA+CGG | - | chr4_2:74372924-74372943 | None:intergenic | 15.0% |
!! | AACTAAACAATTATAATTTC+TGG | - | chr4_2:74373435-74373454 | None:intergenic | 15.0% |
!! | AACAAGTATATTAATTAAGT+TGG | - | chr4_2:74374074-74374093 | None:intergenic | 15.0% |
!! | ATGTTATATTTATTGTTACA+TGG | + | chr4_2:74374332-74374351 | Msa0622000:three_prime_UTR | 15.0% |
!! | CTTTGAATAATAATCAAAGA+AGG | + | chr4_2:74370876-74370895 | Msa0622000:intron | 20.0% |
!! | TTGAATAATAATCAAAGAAG+GGG | + | chr4_2:74370878-74370897 | Msa0622000:intron | 20.0% |
!! | GAAAAAAATAATATGTGAAG+AGG | + | chr4_2:74370925-74370944 | Msa0622000:intron | 20.0% |
!!! | TAAATGAGATAATGTGATTT+TGG | + | chr4_2:74371094-74371113 | Msa0622000:intron | 20.0% |
!! | TATCATTCATAATTTAGATG+TGG | + | chr4_2:74371308-74371327 | Msa0622000:intron | 20.0% |
!!! | ACAATTTTCATTTCATTAAG+TGG | - | chr4_2:74371441-74371460 | None:intergenic | 20.0% |
!! | GTTTACAAATATAACTTCAT+CGG | - | chr4_2:74371560-74371579 | None:intergenic | 20.0% |
!! | AAGTTATATTTGTAAACTAC+TGG | + | chr4_2:74371563-74371582 | Msa0622000:intron | 20.0% |
!!! | TTAATTTGAATTTGATATGC+AGG | + | chr4_2:74371868-74371887 | Msa0622000:intron | 20.0% |
!! | TAATTTGAATTTGATATGCA+GGG | + | chr4_2:74371869-74371888 | Msa0622000:intron | 20.0% |
!!! | AAATTACTTTTCAATGTATC+AGG | - | chr4_2:74372416-74372435 | None:intergenic | 20.0% |
!! | AGCTTAATTATCAACAAAAA+TGG | - | chr4_2:74372482-74372501 | None:intergenic | 20.0% |
!! | AACTTTGACATTAACAAAAA+TGG | - | chr4_2:74372962-74372981 | None:intergenic | 20.0% |
!! | GTCAAAGTTTATAACATATA+AGG | + | chr4_2:74372973-74372992 | Msa0622000:intron | 20.0% |
!! | GTTTATAACATATAAGGATT+TGG | + | chr4_2:74372979-74372998 | Msa0622000:intron | 20.0% |
!! | TCTTTAATATCAATATACTG+AGG | + | chr4_2:74373089-74373108 | Msa0622000:intron | 20.0% |
!! | CTTTAATATCAATATACTGA+GGG | + | chr4_2:74373090-74373109 | Msa0622000:intron | 20.0% |
!! | AAAAAATGTTTATGATTGTG+TGG | + | chr4_2:74373147-74373166 | Msa0622000:intron | 20.0% |
!!! | TCATCAATTATAAGAGATTT+TGG | + | chr4_2:74373791-74373810 | Msa0622000:intron | 20.0% |
!!! | TTAATATACTTGTTGAATTC+AGG | + | chr4_2:74374080-74374099 | Msa0622000:intron | 20.0% |
!! | AAAACTTAATACCCATTTAT+TGG | - | chr4_2:74374421-74374440 | None:intergenic | 20.0% |
! | CTTCTTCTCATAAAACAAAA+CGG | + | chr4_2:74370952-74370971 | Msa0622000:intron | 25.0% |
! | AAAGTGAACCAAAATTGTAA+TGG | + | chr4_2:74371411-74371430 | Msa0622000:intron | 25.0% |
! | AAGTGAACCAAAATTGTAAT+GGG | + | chr4_2:74371412-74371431 | Msa0622000:intron | 25.0% |
! | GGTTTATAAGTTATGGATAT+GGG | - | chr4_2:74371665-74371684 | None:intergenic | 25.0% |
!!! | TTTTAGAGTAGATAGAGATT+AGG | - | chr4_2:74371803-74371822 | None:intergenic | 25.0% |
! | AATTTGAATTTGATATGCAG+GGG | + | chr4_2:74371870-74371889 | Msa0622000:intron | 25.0% |
! | ATAAGACATAGAAAATGGAA+TGG | - | chr4_2:74371985-74372004 | None:intergenic | 25.0% |
! | TTATGTGATTATTGTGATCA+AGG | + | chr4_2:74372039-74372058 | Msa0622000:intron | 25.0% |
! | TTAAAATAAAATACACTGCG+AGG | - | chr4_2:74372181-74372200 | None:intergenic | 25.0% |
! | ATTCTATCTCCATATGAAAA+TGG | - | chr4_2:74372370-74372389 | None:intergenic | 25.0% |
! | AATTATAATGCGAATACATG+TGG | + | chr4_2:74372510-74372529 | Msa0622000:intron | 25.0% |
!! | ACTATGATCTAATTTTCTCA+TGG | + | chr4_2:74373466-74373485 | Msa0622000:intron | 25.0% |
!! | CTATGATCTAATTTTCTCAT+GGG | + | chr4_2:74373467-74373486 | Msa0622000:intron | 25.0% |
!!! | TGCTCTAAAAACACAAATAT+TGG | - | chr4_2:74373706-74373725 | None:intergenic | 25.0% |
!!! | ATTTGGTGTCTATTTTAGAT+TGG | + | chr4_2:74373819-74373838 | Msa0622000:intron | 25.0% |
!! | TGGTTTGAATGGTATATTTT+TGG | + | chr4_2:74373847-74373866 | Msa0622000:intron | 25.0% |
! | AGAGCTAATATAACAAAACT+TGG | - | chr4_2:74373986-74374005 | None:intergenic | 25.0% |
!!! | TTGAGATTGTTTGTTATACA+TGG | + | chr4_2:74374366-74374385 | Msa0622000:three_prime_UTR | 25.0% |
!!! | TTTTAGTTATCTACTTAGAG+AGG | + | chr4_2:74374438-74374457 | Msa0622000:three_prime_UTR | 25.0% |
! | TTTAGTTATCTACTTAGAGA+GGG | + | chr4_2:74374439-74374458 | Msa0622000:three_prime_UTR | 25.0% |
!! | TTGCCTTTTAGAAGAAAAGA+CGG | + | chr4_2:74370832-74370851 | Msa0622000:intron | 30.0% |
ATCATTCACTTTGTAACTGA+CGG | - | chr4_2:74371005-74371024 | None:intergenic | 30.0% | |
TGTTGCATACATATGTGATA+AGG | + | chr4_2:74371458-74371477 | Msa0622000:intron | 30.0% | |
! | TGGACACATATATCTTTTTC+TGG | - | chr4_2:74371492-74371511 | None:intergenic | 30.0% |
!! | AACTGTCGATGAATTTTAAC+TGG | - | chr4_2:74371532-74371551 | None:intergenic | 30.0% |
GGGTTTATAAGTTATGGATA+TGG | - | chr4_2:74371666-74371685 | None:intergenic | 30.0% | |
! | TGTCTAGGGTTTATAAGTTA+TGG | - | chr4_2:74371672-74371691 | None:intergenic | 30.0% |
!! | GTCTTCTCTGTATTTAGTTT+TGG | + | chr4_2:74371839-74371858 | Msa0622000:intron | 30.0% |
! | GATATCATTGGATTTAGGTT+CGG | - | chr4_2:74371939-74371958 | None:intergenic | 30.0% |
AGGTAGATATCATTGGATTT+AGG | - | chr4_2:74371944-74371963 | None:intergenic | 30.0% | |
TTGGAACTAATTGTATTCCT+TGG | - | chr4_2:74372142-74372161 | None:intergenic | 30.0% | |
AATTATAGTCCTAGACCTTA+CGG | - | chr4_2:74372314-74372333 | None:intergenic | 30.0% | |
! | ACTTTTCAATGTATCAGGAA+TGG | - | chr4_2:74372411-74372430 | None:intergenic | 30.0% |
ATAGCTTAAAACACACACTA+AGG | - | chr4_2:74372559-74372578 | None:intergenic | 30.0% | |
! | AATTTTATTCCTGGACCTTA+TGG | - | chr4_2:74372620-74372639 | None:intergenic | 30.0% |
! | GTTGGAACTAATTTTATTCC+TGG | - | chr4_2:74372629-74372648 | None:intergenic | 30.0% |
ATGCATATACTTAGTCCTAA+TGG | - | chr4_2:74372690-74372709 | None:intergenic | 30.0% | |
! | AAATGTGTTTTCGATCAACT+TGG | - | chr4_2:74372758-74372777 | None:intergenic | 30.0% |
GTTGGAACTAATTATATTCC+TGG | - | chr4_2:74372837-74372856 | None:intergenic | 30.0% | |
GTACAATTGATTATATCCAG+AGG | - | chr4_2:74372875-74372894 | None:intergenic | 30.0% | |
!! | TAGGTGTTTGTTGTTGATAT+AGG | + | chr4_2:74373010-74373029 | Msa0622000:intron | 30.0% |
TGGTTAAAAGTAACATCACT+GGG | - | chr4_2:74373046-74373065 | None:intergenic | 30.0% | |
ATGGTTAAAAGTAACATCAC+TGG | - | chr4_2:74373047-74373066 | None:intergenic | 30.0% | |
ATCAACTTTGACAGAGAAAT+TGG | - | chr4_2:74373358-74373377 | None:intergenic | 30.0% | |
TATTAAAAATTGCTGCCCTT+AGG | + | chr4_2:74373571-74373590 | Msa0622000:CDS | 30.0% | |
!!! | AAGAGATTTTGGTGTCTATT+TGG | + | chr4_2:74373802-74373821 | Msa0622000:intron | 30.0% |
!! | TCTATTTTAGATTGGAGACT+TGG | + | chr4_2:74373827-74373846 | Msa0622000:intron | 30.0% |
! | AAGCCTTATGTAAGATCAAA+GGG | + | chr4_2:74374183-74374202 | Msa0622000:CDS | 30.0% |
! | GAAGTATCAAAACTGTAGAA+AGG | - | chr4_2:74374284-74374303 | None:intergenic | 30.0% |
ATTTGATGTCTGCCAATAAA+TGG | + | chr4_2:74374406-74374425 | Msa0622000:three_prime_UTR | 30.0% | |
TTTGATGTCTGCCAATAAAT+GGG | + | chr4_2:74374407-74374426 | Msa0622000:three_prime_UTR | 30.0% | |
! | CATTACTCTTTTACCAATCA+TGG | + | chr4_2:74374485-74374504 | Msa0622000:three_prime_UTR | 30.0% |
!! | AATAACGTGTTGCTTAGATT+TGG | + | chr4_2:74374544-74374563 | Msa0622000:three_prime_UTR | 30.0% |
! | CTTCTAAAAGGCAAAACCTT+GGG | - | chr4_2:74370826-74370845 | None:intergenic | 35.0% |
! | TCTTCTAAAAGGCAAAACCT+TGG | - | chr4_2:74370827-74370846 | None:intergenic | 35.0% |
! | TCTCCGTCTTTTCTTCTAAA+AGG | - | chr4_2:74370838-74370857 | None:intergenic | 35.0% |
GAAGGGGATTAAAAATGTCA+AGG | + | chr4_2:74370894-74370913 | Msa0622000:intron | 35.0% | |
TCATTCACTTTGTAACTGAC+GGG | - | chr4_2:74371004-74371023 | None:intergenic | 35.0% | |
!! | TCTAACTTTCGTTTTGGACT+GGG | - | chr4_2:74371639-74371658 | None:intergenic | 35.0% |
!! | TTCTAACTTTCGTTTTGGAC+TGG | - | chr4_2:74371640-74371659 | None:intergenic | 35.0% |
TCAATTACCATTGTAGCTCA+GGG | - | chr4_2:74371774-74371793 | None:intergenic | 35.0% | |
ATCAATTACCATTGTAGCTC+AGG | - | chr4_2:74371775-74371794 | None:intergenic | 35.0% | |
!! | AATTGTATTCCTTGGCCTTA+CGG | - | chr4_2:74372134-74372153 | None:intergenic | 35.0% |
ATACTTAGTCCTAATGGTGA+TGG | - | chr4_2:74372684-74372703 | None:intergenic | 35.0% | |
AATTATATTCCTGGACCTTC+CGG | - | chr4_2:74372828-74372847 | None:intergenic | 35.0% | |
! | TAAGGATTTGGCTTCATGAT+AGG | + | chr4_2:74372991-74373010 | Msa0622000:intron | 35.0% |
TGTTGTTGATATAGGACTTG+AGG | + | chr4_2:74373018-74373037 | Msa0622000:intron | 35.0% | |
TCATGTAATCAGCATTAGCA+TGG | - | chr4_2:74373066-74373085 | None:intergenic | 35.0% | |
TGCAACACATGGAATTAGAA+TGG | - | chr4_2:74373241-74373260 | None:intergenic | 35.0% | |
TATATCGCTTCCTTGTTAGA+AGG | + | chr4_2:74373269-74373288 | Msa0622000:CDS | 35.0% | |
AACTTTGACAGAGAAATTGG+AGG | - | chr4_2:74373355-74373374 | None:intergenic | 35.0% | |
! | AAAGTTGATCGAGTACATGA+AGG | + | chr4_2:74373369-74373388 | Msa0622000:CDS | 35.0% |
! | AAGTTGATCGAGTACATGAA+GGG | + | chr4_2:74373370-74373389 | Msa0622000:CDS | 35.0% |
ATGGGATTATTGTGTTATGC+AGG | + | chr4_2:74373485-74373504 | Msa0622000:intron | 35.0% | |
GATTATTGTGTTATGCAGGA+CGG | + | chr4_2:74373489-74373508 | Msa0622000:intron | 35.0% | |
! | GGGCAGCAATTTTTAATACT+GGG | - | chr4_2:74373569-74373588 | None:intergenic | 35.0% |
! | AGGGCAGCAATTTTTAATAC+TGG | - | chr4_2:74373570-74373589 | None:intergenic | 35.0% |
TAATGACGCAATGGATAGTA+AGG | - | chr4_2:74373741-74373760 | None:intergenic | 35.0% | |
ATCCATTGCGTCATTATGAT+TGG | + | chr4_2:74373745-74373764 | Msa0622000:intron | 35.0% | |
TCCATTGCGTCATTATGATT+GGG | + | chr4_2:74373746-74373765 | Msa0622000:intron | 35.0% | |
TTGGCTTCATAAAAGCTTGT+TGG | - | chr4_2:74374055-74374074 | None:intergenic | 35.0% | |
ATCTTACATAAGGCTTGGAA+TGG | - | chr4_2:74374179-74374198 | None:intergenic | 35.0% | |
CTTTGATCTTACATAAGGCT+TGG | - | chr4_2:74374184-74374203 | None:intergenic | 35.0% | |
! | CAAGCCTTATGTAAGATCAA+AGG | + | chr4_2:74374182-74374201 | Msa0622000:CDS | 35.0% |
CTTCCCTTTGATCTTACATA+AGG | - | chr4_2:74374189-74374208 | None:intergenic | 35.0% | |
CTTATGTAAGATCAAAGGGA+AGG | + | chr4_2:74374187-74374206 | Msa0622000:CDS | 35.0% | |
! | ACTCTTTTACCAATCATGGT+TGG | + | chr4_2:74374489-74374508 | Msa0622000:three_prime_UTR | 35.0% |
AAAGGCAAAACCTTGGGATT+TGG | - | chr4_2:74370820-74370839 | None:intergenic | 40.0% | |
! | GTGGAAGCCCATTACAATTT+TGG | - | chr4_2:74371422-74371441 | None:intergenic | 40.0% |
TGCTGTTCACACATTGTGTT+TGG | - | chr4_2:74371599-74371618 | None:intergenic | 40.0% | |
! | GGGCTTTCTAACTTTCGTTT+TGG | - | chr4_2:74371645-74371664 | None:intergenic | 40.0% |
GAGCTTGAGGTAGATATCAT+TGG | - | chr4_2:74371951-74371970 | None:intergenic | 40.0% | |
!! | CCATATGAAAATGGACTGAG+AGG | - | chr4_2:74372361-74372380 | None:intergenic | 40.0% |
! | CCTCTCAGTCCATTTTCATA+TGG | + | chr4_2:74372358-74372377 | Msa0622000:intron | 40.0% |
ATAGAATAGCTTCTTCAGCC+AGG | + | chr4_2:74372383-74372402 | Msa0622000:intron | 40.0% | |
AATGTATCAGGAATGGTTCC+TGG | - | chr4_2:74372404-74372423 | None:intergenic | 40.0% | |
ATAGCTGATTGTGCAACACA+TGG | - | chr4_2:74373252-74373271 | None:intergenic | 40.0% | |
GACTGACAGCAATTTCAATG+CGG | + | chr4_2:74373291-74373310 | Msa0622000:CDS | 40.0% | |
TTGACAGAGAAATTGGAGGT+CGG | - | chr4_2:74373351-74373370 | None:intergenic | 40.0% | |
AGTTGATCGAGTACATGAAG+GGG | + | chr4_2:74373371-74373390 | Msa0622000:CDS | 40.0% | |
GTTATGCAGGACGGTAAAAT+TGG | + | chr4_2:74373498-74373517 | Msa0622000:intron | 40.0% | |
!! | GGTAAAATTGGTGTCGTTGT+GGG | + | chr4_2:74373510-74373529 | Msa0622000:CDS | 40.0% |
!! | GTAAAATTGGTGTCGTTGTG+GGG | + | chr4_2:74373511-74373530 | Msa0622000:CDS | 40.0% |
!! | TAAAATTGGTGTCGTTGTGG+GGG | + | chr4_2:74373512-74373531 | Msa0622000:CDS | 40.0% |
GGCTGTAACAGATGATATCA+GGG | + | chr4_2:74373533-74373552 | Msa0622000:CDS | 40.0% | |
!! | GGGCAAGTTGATCAAATGTT+AGG | - | chr4_2:74373644-74373663 | None:intergenic | 40.0% |
TCCCAATCATAATGACGCAA+TGG | - | chr4_2:74373750-74373769 | None:intergenic | 40.0% | |
! | GATTGGAGACTTGGTTTGAA+TGG | + | chr4_2:74373836-74373855 | Msa0622000:intron | 40.0% |
TTCCTGTGAGTAGTTGTGAT+GGG | + | chr4_2:74373936-74373955 | Msa0622000:intron | 40.0% | |
TGGTAAGCTCAACATAACCA+AGG | - | chr4_2:74373966-74373985 | None:intergenic | 40.0% | |
TTCCTGTGAGTAGTTGTGAT+GGG | + | chr4_2:74373936-74373955 | Msa0622000:intron | 40.0% | |
TGGTAAGCTCAACATAACCA+AGG | - | chr4_2:74373966-74373985 | None:intergenic | 40.0% | |
AGGGAAGCAGTAAAACACTT+TGG | + | chr4_2:74374129-74374148 | Msa0622000:CDS | 40.0% | |
AAAGGGAAGGAAACAAGAGA+AGG | + | chr4_2:74374200-74374219 | Msa0622000:CDS | 40.0% | |
AGAGGAAGAGTAGAGGATTT+AGG | + | chr4_2:74374232-74374251 | Msa0622000:CDS | 40.0% | |
GAGGAAGAGTAGAGGATTTA+GGG | + | chr4_2:74374233-74374252 | Msa0622000:CDS | 40.0% | |
TTACATTCGCCAACCATGAT+TGG | - | chr4_2:74374501-74374520 | None:intergenic | 40.0% | |
TACCATCACCCAGAAATTGC+AGG | + | chr4_2:74370769-74370788 | Msa0622000:intron | 45.0% | |
GTTCACACATTGTGTTTGGC+TGG | - | chr4_2:74371595-74371614 | None:intergenic | 45.0% | |
GGAAATGAAGCTCGTGTCTA+GGG | - | chr4_2:74371686-74371705 | None:intergenic | 45.0% | |
GCGTATTTATAGGCGGAACA+CGG | - | chr4_2:74371707-74371726 | None:intergenic | 45.0% | |
CGCGAATGCGTATTTATAGG+CGG | - | chr4_2:74371714-74371733 | None:intergenic | 45.0% | |
CGCCTATAAATACGCATTCG+CGG | + | chr4_2:74371712-74371731 | Msa0622000:intron | 45.0% | |
AGCCGCGAATGCGTATTTAT+AGG | - | chr4_2:74371717-74371736 | None:intergenic | 45.0% | |
! | GGATTTAGGTTCGGTTCGTT+TGG | - | chr4_2:74371930-74371949 | None:intergenic | 45.0% |
AAATGGAATGGACCTTGACG+AGG | - | chr4_2:74371973-74371992 | None:intergenic | 45.0% | |
AATGTGATCCCAGCTCTATG+AGG | + | chr4_2:74372108-74372127 | Msa0622000:intron | 45.0% | |
AGGCTCAGACAAATGTGTGT+TGG | - | chr4_2:74372161-74372180 | None:intergenic | 45.0% | |
AATGTGATCCCAGCTCTATG+AGG | + | chr4_2:74372108-74372127 | Msa0622000:intron | 45.0% | |
AGGCTCAGACAAATGTGTGT+TGG | - | chr4_2:74372161-74372180 | None:intergenic | 45.0% | |
CCTTATGGTCTCATAGAGCT+GGG | - | chr4_2:74372605-74372624 | None:intergenic | 45.0% | |
ACCTTATGGTCTCATAGAGC+TGG | - | chr4_2:74372606-74372625 | None:intergenic | 45.0% | |
TCTATGAGACCATAAGGTCC+AGG | + | chr4_2:74372608-74372627 | Msa0622000:intron | 45.0% | |
TCTCTCACACCATCACCATT+AGG | + | chr4_2:74372672-74372691 | Msa0622000:intron | 45.0% | |
AGGCTCAGACAAATGTGTGT+TGG | - | chr4_2:74372161-74372180 | None:intergenic | 45.0% | |
TGCTGTCAGTCCTTCTAACA+AGG | - | chr4_2:74373282-74373301 | None:intergenic | 45.0% | |
!! | CGGTAAAATTGGTGTCGTTG+TGG | + | chr4_2:74373509-74373528 | Msa0622000:CDS | 45.0% |
GGGCTGTAACAGATGATATC+AGG | + | chr4_2:74373532-74373551 | Msa0622000:CDS | 45.0% | |
ACGTGCAAGAATAGAGAAGG+CGG | + | chr4_2:74373608-74373627 | Msa0622000:CDS | 45.0% | |
TCATACCGTGTTCTGTCCAA+GGG | - | chr4_2:74373676-74373695 | None:intergenic | 45.0% | |
CTTCCTGTGAGTAGTTGTGA+TGG | + | chr4_2:74373935-74373954 | Msa0622000:intron | 45.0% | |
ATCCCATCACAACTACTCAC+AGG | - | chr4_2:74373941-74373960 | None:intergenic | 45.0% | |
! | TAGTTGTGATGGGATAGCCT+TGG | + | chr4_2:74373946-74373965 | Msa0622000:intron | 45.0% |
CTTCCTGTGAGTAGTTGTGA+TGG | + | chr4_2:74373935-74373954 | Msa0622000:intron | 45.0% | |
ATCCCATCACAACTACTCAC+AGG | - | chr4_2:74373941-74373960 | None:intergenic | 45.0% | |
! | TAGTTGTGATGGGATAGCCT+TGG | + | chr4_2:74373946-74373965 | Msa0622000:intron | 45.0% |
TGAATTCAGGTCCTCCTAAG+AGG | + | chr4_2:74374093-74374112 | Msa0622000:intron | 45.0% | |
TAGCATTCTTTGGGCCTCTT+AGG | - | chr4_2:74374110-74374129 | None:intergenic | 45.0% | |
TAAGAGGCCCAAAGAATGCT+AGG | + | chr4_2:74374109-74374128 | Msa0622000:CDS | 45.0% | |
AAGAGGCCCAAAGAATGCTA+GGG | + | chr4_2:74374110-74374129 | Msa0622000:CDS | 45.0% | |
CTGCTTCCCTAGCATTCTTT+GGG | - | chr4_2:74374119-74374138 | None:intergenic | 45.0% | |
ACTGCTTCCCTAGCATTCTT+TGG | - | chr4_2:74374120-74374139 | None:intergenic | 45.0% | |
TCTACTCTTCCTCTTTCCTC+TGG | - | chr4_2:74374226-74374245 | None:intergenic | 45.0% | |
AGAGGAAAGAGGAAGAGTAG+AGG | + | chr4_2:74374225-74374244 | Msa0622000:CDS | 45.0% | |
!!! | ATATAAATTTTTATTTTTCA+AGG | - | chr4_2:74371191-74371210 | None:intergenic | 5.0% |
!!! | ATTGTATTTTTTTATATTAT+TGG | + | chr4_2:74371209-74371228 | Msa0622000:intron | 5.0% |
!! | TAAATAAATAAATACAAAAA+CGG | - | chr4_2:74372018-74372037 | None:intergenic | 5.0% |
!! | GAGGTTGGCCTGCAATTTCT+GGG | - | chr4_2:74370780-74370799 | None:intergenic | 50.0% |
! | CCTCTAAGAAGCAACGAGGT+TGG | - | chr4_2:74370795-74370814 | None:intergenic | 50.0% |
CCAACCTCGTTGCTTCTTAG+AGG | + | chr4_2:74370792-74370811 | Msa0622000:intron | 50.0% | |
!! | CTTAGAGGCACCAAATCCCA+AGG | + | chr4_2:74370807-74370826 | Msa0622000:intron | 50.0% |
TGGCAGCAGTTAACTGTCGA+TGG | - | chr4_2:74371512-74371531 | None:intergenic | 50.0% | |
CGGAAATGAAGCTCGTGTCT+AGG | - | chr4_2:74371687-74371706 | None:intergenic | 50.0% | |
! | ATTGTAGCTCAGGGTTCTGG+AGG | - | chr4_2:74371765-74371784 | None:intergenic | 50.0% |
TCCAGAACCCTGAGCTACAA+TGG | + | chr4_2:74371764-74371783 | Msa0622000:intron | 50.0% | |
ACCATTGTAGCTCAGGGTTC+TGG | - | chr4_2:74371768-74371787 | None:intergenic | 50.0% | |
AGGGGATCGATCTCAAAGCT+GGG | + | chr4_2:74371888-74371907 | Msa0622000:intron | 50.0% | |
TCTATGAGGCCGTAAGGTCT+AGG | + | chr4_2:74372302-74372321 | Msa0622000:intron | 50.0% | |
CCCAGCTCTATGAGACCATA+AGG | + | chr4_2:74372602-74372621 | Msa0622000:intron | 50.0% | |
AGGCTCAGACAAGTGTGTGT+TGG | - | chr4_2:74372647-74372666 | None:intergenic | 50.0% | |
! | TGATGGTGTGAGAGATGCAG+AGG | - | chr4_2:74372667-74372686 | None:intergenic | 50.0% |
TGATCCCAGCTCTATGAGAC+CGG | + | chr4_2:74372598-74372617 | Msa0622000:intron | 50.0% | |
CACACATTTGTCTGAGCCTC+TGG | + | chr4_2:74372162-74372181 | Msa0622000:intron | 50.0% | |
CAAGCGCTTGTTCATGAGCA+AGG | + | chr4_2:74373321-74373340 | Msa0622000:CDS | 50.0% | |
GATCGAGTACATGAAGGGGA+AGG | + | chr4_2:74373375-74373394 | Msa0622000:CDS | 50.0% | |
TGCCCTTAGGTTCACAGAGA+CGG | + | chr4_2:74373584-74373603 | Msa0622000:CDS | 50.0% | |
TGCCGTCTCTGTGAACCTAA+GGG | - | chr4_2:74373589-74373608 | None:intergenic | 50.0% | |
GGCACGTGCAAGAATAGAGA+AGG | + | chr4_2:74373605-74373624 | Msa0622000:CDS | 50.0% | |
CGTGCAAGAATAGAGAAGGC+GGG | + | chr4_2:74373609-74373628 | Msa0622000:CDS | 50.0% | |
CATACCGTGTTCTGTCCAAG+GGG | - | chr4_2:74373675-74373694 | None:intergenic | 50.0% | |
CTCATACCGTGTTCTGTCCA+AGG | - | chr4_2:74373677-74373696 | None:intergenic | 50.0% | |
CATTCTTTGGGCCTCTTAGG+AGG | - | chr4_2:74374107-74374126 | None:intergenic | 50.0% | |
AAACACTTTGGTCGTGCTCC+TGG | + | chr4_2:74374141-74374160 | Msa0622000:CDS | 50.0% | |
TAAGGCTTGGAATGGCTGTG+TGG | - | chr4_2:74374171-74374190 | None:intergenic | 50.0% | |
AGGAAACAAGAGAAGGCCAG+AGG | + | chr4_2:74374207-74374226 | Msa0622000:CDS | 50.0% | |
AAGAGAAGGCCAGAGGAAAG+AGG | + | chr4_2:74374214-74374233 | Msa0622000:CDS | 50.0% | |
! | GGCCTGCAATTTCTGGGTGA+TGG | - | chr4_2:74370774-74370793 | None:intergenic | 55.0% |
!! | CGAGGTTGGCCTGCAATTTC+TGG | - | chr4_2:74370781-74370800 | None:intergenic | 55.0% |
! | GGTGCCTCTAAGAAGCAACG+AGG | - | chr4_2:74370799-74370818 | None:intergenic | 55.0% |
CAGGGGATCGATCTCAAAGC+TGG | + | chr4_2:74371887-74371906 | Msa0622000:intron | 55.0% | |
GGGGATCGATCTCAAAGCTG+GGG | + | chr4_2:74371889-74371908 | Msa0622000:intron | 55.0% | |
GGGATCGATCTCAAAGCTGG+GGG | + | chr4_2:74371890-74371909 | Msa0622000:CDS | 55.0% | |
CTACCTCAAGCTCCTCGTCA+AGG | + | chr4_2:74371958-74371977 | Msa0622000:CDS | 55.0% | |
CCTTACGGCCTCATAGAGCT+GGG | - | chr4_2:74372119-74372138 | None:intergenic | 55.0% | |
TCTATGAGGCCGTAAGGCCA+AGG | + | chr4_2:74372122-74372141 | Msa0622000:intron | 55.0% | |
CCTTACGGCCTCATAGAGCT+GGG | - | chr4_2:74372119-74372138 | None:intergenic | 55.0% | |
ACCTTACGGCCTCATAGAGC+TGG | - | chr4_2:74372300-74372319 | None:intergenic | 55.0% | |
CCTTCCGGTCTCATAGAGCT+GGG | - | chr4_2:74372813-74372832 | None:intergenic | 55.0% | |
ACCTTCCGGTCTCATAGAGC+TGG | - | chr4_2:74372814-74372833 | None:intergenic | 55.0% | |
TCTATGAGACCGGAAGGTCC+AGG | + | chr4_2:74372816-74372835 | Msa0622000:intron | 55.0% | |
GTGCCGTCTCTGTGAACCTA+AGG | - | chr4_2:74373590-74373609 | None:intergenic | 55.0% | |
GCAAGAATAGAGAAGGCGGG+TGG | + | chr4_2:74373612-74373631 | Msa0622000:CDS | 55.0% | |
! | CTGTCCAAGGGGAGCTCTAA+GGG | - | chr4_2:74373664-74373683 | None:intergenic | 55.0% |
TCTGTCCAAGGGGAGCTCTA+AGG | - | chr4_2:74373665-74373684 | None:intergenic | 55.0% | |
AGCTCCCCTTGGACAGAACA+CGG | + | chr4_2:74373668-74373687 | Msa0622000:CDS | 55.0% | |
GGACCTTGACGAGGAGCTTG+AGG | - | chr4_2:74371964-74371983 | None:intergenic | 60.0% | |
CCCAGCTCTATGAGGCCGTA+AGG | + | chr4_2:74372116-74372135 | Msa0622000:intron | 60.0% | |
GCCTTACGGCCTCATAGAGC+TGG | - | chr4_2:74372120-74372139 | None:intergenic | 60.0% | |
CCCAGCTCTATGAGGCCGTA+AGG | + | chr4_2:74372116-74372135 | Msa0622000:intron | 60.0% | |
CCCAGCTCTATGAGACCGGA+AGG | + | chr4_2:74372810-74372829 | Msa0622000:intron | 60.0% | |
CTTGCCCTTAGAGCTCCCCT+TGG | + | chr4_2:74373657-74373676 | Msa0622000:CDS | 60.0% | |
GAATGGCTGTGTGGCACACC+AGG | - | chr4_2:74374162-74374181 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 74370728 | 74374573 | 74370728 | ID=Msa0622000;Name=Msa0622000 |
chr4_2 | mRNA | 74370728 | 74374573 | 74370728 | ID=Msa0622000-mRNA-1;Parent=Msa0622000;Name=Msa0622000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.8|0.8|0.25|0.8|5|313|189 |
chr4_2 | exon | 74370728 | 74370736 | 74370728 | ID=Msa0622000-mRNA-1:exon:22389;Parent=Msa0622000-mRNA-1 |
chr4_2 | exon | 74371890 | 74371979 | 74371890 | ID=Msa0622000-mRNA-1:exon:22390;Parent=Msa0622000-mRNA-1 |
chr4_2 | exon | 74373268 | 74373396 | 74373268 | ID=Msa0622000-mRNA-1:exon:22391;Parent=Msa0622000-mRNA-1 |
chr4_2 | exon | 74373507 | 74373689 | 74373507 | ID=Msa0622000-mRNA-1:exon:22392;Parent=Msa0622000-mRNA-1 |
chr4_2 | exon | 74374102 | 74374573 | 74374102 | ID=Msa0622000-mRNA-1:exon:22393;Parent=Msa0622000-mRNA-1 |
chr4_2 | CDS | 74370728 | 74370736 | 74370728 | ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1 |
chr4_2 | CDS | 74371890 | 74371979 | 74371890 | ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1 |
chr4_2 | CDS | 74373268 | 74373396 | 74373268 | ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1 |
chr4_2 | CDS | 74373507 | 74373689 | 74373507 | ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1 |
chr4_2 | CDS | 74374102 | 74374260 | 74374102 | ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1 |
chr4_2 | three_prime_UTR | 74374261 | 74374573 | 74374261 | ID=Msa0622000-mRNA-1:three_prime_utr;Parent=Msa0622000-mRNA-1 |
Gene Sequence |
Protein sequence |