AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622000 MtrunA17_Chr7g0272381 98.925 186 2 0 4 189 2 187 8.13e-133 369
Msa0622000 MtrunA17_Chr1g0192271 86.559 186 25 0 4 189 2 187 5.83e-117 329
Msa0622000 MtrunA17_Chr7g0269451 86.631 187 24 1 4 189 2 188 1.10e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622000 AT5G27850.1 81.720 186 34 0 4 189 2 187 1.47e-111 316
Msa0622000 AT3G05590.1 81.183 186 35 0 4 189 2 187 6.40e-111 314
Msa0622000 AT2G47570.1 75.269 186 45 1 5 189 1 186 5.51e-101 289
Msa0622000 AT3G05590.3 80.597 134 26 0 56 189 1 134 1.89e-78 230
Msa0622000 AT3G05590.2 80.597 134 26 0 56 189 1 134 1.89e-78 230
Msa0622000 AT5G27850.2 79.851 134 27 0 56 189 1 134 3.57e-77 227

Find 77 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGAAGAGTAGAGGATTT+AGG 0.132509 4_2:+74374232 Msa0622000:CDS
GAGGAAGAGTAGAGGATTTA+GGG 0.159004 4_2:+74374233 Msa0622000:CDS
AAAACTTAATACCCATTTAT+TGG 0.197066 4_2:-74374418 None:intergenic
ACTGCTTCCCTAGCATTCTT+TGG 0.206364 4_2:-74374117 None:intergenic
ATCAACTTTGACAGAGAAAT+TGG 0.227766 4_2:-74373355 None:intergenic
TAGCATTCTTTGGGCCTCTT+AGG 0.233236 4_2:-74374107 None:intergenic
ATTTGATGTCTGCCAATAAA+TGG 0.237190 4_2:+74374406 Msa0622000:three_prime_UTR
AGGTAGATATCATTGGATTT+AGG 0.281327 4_2:-74371941 None:intergenic
GGTAAAATTGGTGTCGTTGT+GGG 0.314974 4_2:+74373510 Msa0622000:CDS
CTGCTTCCCTAGCATTCTTT+GGG 0.325698 4_2:-74374116 None:intergenic
CTTCCCTTTGATCTTACATA+AGG 0.356102 4_2:-74374186 None:intergenic
AATAACGTGTTGCTTAGATT+TGG 0.356315 4_2:+74374544 Msa0622000:three_prime_UTR
GGGCTGTAACAGATGATATC+AGG 0.365645 4_2:+74373532 Msa0622000:CDS
TATATCGCTTCCTTGTTAGA+AGG 0.375930 4_2:+74373269 Msa0622000:CDS
GTTATGCAGGACGGTAAAAT+TGG 0.388471 4_2:+74373498 Msa0622000:intron
GGATTTAGGTTCGGTTCGTT+TGG 0.400306 4_2:-74371927 None:intergenic
TTACATTCGCCAACCATGAT+TGG 0.408818 4_2:-74374498 None:intergenic
GAGCTTGAGGTAGATATCAT+TGG 0.411467 4_2:-74371948 None:intergenic
CTTTGATCTTACATAAGGCT+TGG 0.418522 4_2:-74374181 None:intergenic
CAGGGGATCGATCTCAAAGC+TGG 0.420599 4_2:+74371887 Msa0622000:intron
GATATCATTGGATTTAGGTT+CGG 0.438911 4_2:-74371936 None:intergenic
TCTACTCTTCCTCTTTCCTC+TGG 0.440211 4_2:-74374223 None:intergenic
TCTGTCCAAGGGGAGCTCTA+AGG 0.443443 4_2:-74373662 None:intergenic
GGGCAAGTTGATCAAATGTT+AGG 0.445307 4_2:-74373641 None:intergenic
CGGTAAAATTGGTGTCGTTG+TGG 0.446137 4_2:+74373509 Msa0622000:CDS
TTGAGATTGTTTGTTATACA+TGG 0.458757 4_2:+74374366 Msa0622000:three_prime_UTR
ATGTTATATTTATTGTTACA+TGG 0.459722 4_2:+74374332 Msa0622000:three_prime_UTR
GTGCCGTCTCTGTGAACCTA+AGG 0.461512 4_2:-74373587 None:intergenic
AAGCCTTATGTAAGATCAAA+GGG 0.467688 4_2:+74374183 Msa0622000:CDS
AAACACTTTGGTCGTGCTCC+TGG 0.468460 4_2:+74374141 Msa0622000:CDS
CTGTCCAAGGGGAGCTCTAA+GGG 0.473811 4_2:-74373661 None:intergenic
GTAAAATTGGTGTCGTTGTG+GGG 0.476743 4_2:+74373511 Msa0622000:CDS
CATTCTTTGGGCCTCTTAGG+AGG 0.481833 4_2:-74374104 None:intergenic
TAAGAGGCCCAAAGAATGCT+AGG 0.491610 4_2:+74374109 Msa0622000:CDS
CAAGCCTTATGTAAGATCAA+AGG 0.498391 4_2:+74374182 Msa0622000:CDS
TGAATTCAGGTCCTCCTAAG+AGG 0.506122 4_2:+74374093 Msa0622000:intron
AAGAGAAGGCCAGAGGAAAG+AGG 0.507573 4_2:+74374214 Msa0622000:CDS
GAATGGCTGTGTGGCACACC+AGG 0.520029 4_2:-74374159 None:intergenic
GAAGTATCAAAACTGTAGAA+AGG 0.522174 4_2:-74374281 None:intergenic
CTCATACCGTGTTCTGTCCA+AGG 0.524348 4_2:-74373674 None:intergenic
ATCTTACATAAGGCTTGGAA+TGG 0.527336 4_2:-74374176 None:intergenic
TGCCCTTAGGTTCACAGAGA+CGG 0.538036 4_2:+74373584 Msa0622000:CDS
TTTGATGTCTGCCAATAAAT+GGG 0.547480 4_2:+74374407 Msa0622000:three_prime_UTR
AAAGTTGATCGAGTACATGA+AGG 0.551641 4_2:+74373369 Msa0622000:CDS
AAGTTGATCGAGTACATGAA+GGG 0.557741 4_2:+74373370 Msa0622000:CDS
TTTAGTTATCTACTTAGAGA+GGG 0.568102 4_2:+74374439 Msa0622000:three_prime_UTR
GGACCTTGACGAGGAGCTTG+AGG 0.569815 4_2:-74371961 None:intergenic
AGGGGATCGATCTCAAAGCT+GGG 0.574140 4_2:+74371888 Msa0622000:intron
CTTGCCCTTAGAGCTCCCCT+TGG 0.575267 4_2:+74373657 Msa0622000:CDS
TGCTGTCAGTCCTTCTAACA+AGG 0.579764 4_2:-74373279 None:intergenic
GGCTGTAACAGATGATATCA+GGG 0.589836 4_2:+74373533 Msa0622000:CDS
AGGGAAGCAGTAAAACACTT+TGG 0.592083 4_2:+74374129 Msa0622000:CDS
TCATACCGTGTTCTGTCCAA+GGG 0.595030 4_2:-74373673 None:intergenic
CAAGCGCTTGTTCATGAGCA+AGG 0.595633 4_2:+74373321 Msa0622000:CDS
AACTTTGACAGAGAAATTGG+AGG 0.595797 4_2:-74373352 None:intergenic
AAAGGGAAGGAAACAAGAGA+AGG 0.607313 4_2:+74374200 Msa0622000:CDS
CGTGCAAGAATAGAGAAGGC+GGG 0.608166 4_2:+74373609 Msa0622000:CDS
TTGACAGAGAAATTGGAGGT+CGG 0.608358 4_2:-74373348 None:intergenic
AGCTCCCCTTGGACAGAACA+CGG 0.610780 4_2:+74373668 Msa0622000:CDS
TGCCGTCTCTGTGAACCTAA+GGG 0.611665 4_2:-74373586 None:intergenic
CTACCTCAAGCTCCTCGTCA+AGG 0.612377 4_2:+74371958 Msa0622000:CDS
TAAAATTGGTGTCGTTGTGG+GGG 0.613763 4_2:+74373512 Msa0622000:CDS
CTTATGTAAGATCAAAGGGA+AGG 0.618781 4_2:+74374187 Msa0622000:CDS
GGCACGTGCAAGAATAGAGA+AGG 0.623253 4_2:+74373605 Msa0622000:CDS
AGGAAACAAGAGAAGGCCAG+AGG 0.627136 4_2:+74374207 Msa0622000:CDS
AGAGGAAAGAGGAAGAGTAG+AGG 0.627781 4_2:+74374225 Msa0622000:CDS
AAGAGGCCCAAAGAATGCTA+GGG 0.636036 4_2:+74374110 Msa0622000:CDS
GGGGATCGATCTCAAAGCTG+GGG 0.637375 4_2:+74371889 Msa0622000:intron
AAATGGAATGGACCTTGACG+AGG 0.641410 4_2:-74371970 None:intergenic
AGTTGATCGAGTACATGAAG+GGG 0.649783 4_2:+74373371 Msa0622000:CDS
GATCGAGTACATGAAGGGGA+AGG 0.663524 4_2:+74373375 Msa0622000:CDS
ACGTGCAAGAATAGAGAAGG+CGG 0.663924 4_2:+74373608 Msa0622000:CDS
GCAAGAATAGAGAAGGCGGG+TGG 0.710757 4_2:+74373612 Msa0622000:CDS
CATACCGTGTTCTGTCCAAG+GGG 0.721874 4_2:-74373672 None:intergenic
GGGATCGATCTCAAAGCTGG+GGG 0.738953 4_2:+74371890 Msa0622000:CDS
GACTGACAGCAATTTCAATG+CGG 0.745385 4_2:+74373291 Msa0622000:CDS
TAAGGCTTGGAATGGCTGTG+TGG 0.750805 4_2:-74374168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTCGATTTTTT+CGG - chr4_2:74371028-74371047 None:intergenic 10.0%
!! ATACGATAAAATAAAAATTA+TGG - chr4_2:74372253-74372272 None:intergenic 10.0%
!! TTTGAATAATAATCAAAGAA+GGG + chr4_2:74370877-74370896 Msa0622000:intron 15.0%
!! TATATTGGTATAGATTATAA+TGG - chr4_2:74371074-74371093 None:intergenic 15.0%
!! ACATTATCTCATTTATATAT+TGG - chr4_2:74371089-74371108 None:intergenic 15.0%
!!! ATTTTATAAGACATAGAAAA+TGG - chr4_2:74371990-74372009 None:intergenic 15.0%
!! AGAATGCAAATTATTTATAA+CGG - chr4_2:74372924-74372943 None:intergenic 15.0%
!! AACTAAACAATTATAATTTC+TGG - chr4_2:74373435-74373454 None:intergenic 15.0%
!! AACAAGTATATTAATTAAGT+TGG - chr4_2:74374074-74374093 None:intergenic 15.0%
!! ATGTTATATTTATTGTTACA+TGG + chr4_2:74374332-74374351 Msa0622000:three_prime_UTR 15.0%
!! CTTTGAATAATAATCAAAGA+AGG + chr4_2:74370876-74370895 Msa0622000:intron 20.0%
!! TTGAATAATAATCAAAGAAG+GGG + chr4_2:74370878-74370897 Msa0622000:intron 20.0%
!! GAAAAAAATAATATGTGAAG+AGG + chr4_2:74370925-74370944 Msa0622000:intron 20.0%
!!! TAAATGAGATAATGTGATTT+TGG + chr4_2:74371094-74371113 Msa0622000:intron 20.0%
!! TATCATTCATAATTTAGATG+TGG + chr4_2:74371308-74371327 Msa0622000:intron 20.0%
!!! ACAATTTTCATTTCATTAAG+TGG - chr4_2:74371441-74371460 None:intergenic 20.0%
!! GTTTACAAATATAACTTCAT+CGG - chr4_2:74371560-74371579 None:intergenic 20.0%
!! AAGTTATATTTGTAAACTAC+TGG + chr4_2:74371563-74371582 Msa0622000:intron 20.0%
!!! TTAATTTGAATTTGATATGC+AGG + chr4_2:74371868-74371887 Msa0622000:intron 20.0%
!! TAATTTGAATTTGATATGCA+GGG + chr4_2:74371869-74371888 Msa0622000:intron 20.0%
!!! AAATTACTTTTCAATGTATC+AGG - chr4_2:74372416-74372435 None:intergenic 20.0%
!! AGCTTAATTATCAACAAAAA+TGG - chr4_2:74372482-74372501 None:intergenic 20.0%
!! AACTTTGACATTAACAAAAA+TGG - chr4_2:74372962-74372981 None:intergenic 20.0%
!! GTCAAAGTTTATAACATATA+AGG + chr4_2:74372973-74372992 Msa0622000:intron 20.0%
!! GTTTATAACATATAAGGATT+TGG + chr4_2:74372979-74372998 Msa0622000:intron 20.0%
!! TCTTTAATATCAATATACTG+AGG + chr4_2:74373089-74373108 Msa0622000:intron 20.0%
!! CTTTAATATCAATATACTGA+GGG + chr4_2:74373090-74373109 Msa0622000:intron 20.0%
!! AAAAAATGTTTATGATTGTG+TGG + chr4_2:74373147-74373166 Msa0622000:intron 20.0%
!!! TCATCAATTATAAGAGATTT+TGG + chr4_2:74373791-74373810 Msa0622000:intron 20.0%
!!! TTAATATACTTGTTGAATTC+AGG + chr4_2:74374080-74374099 Msa0622000:intron 20.0%
!! AAAACTTAATACCCATTTAT+TGG - chr4_2:74374421-74374440 None:intergenic 20.0%
! CTTCTTCTCATAAAACAAAA+CGG + chr4_2:74370952-74370971 Msa0622000:intron 25.0%
! AAAGTGAACCAAAATTGTAA+TGG + chr4_2:74371411-74371430 Msa0622000:intron 25.0%
! AAGTGAACCAAAATTGTAAT+GGG + chr4_2:74371412-74371431 Msa0622000:intron 25.0%
! GGTTTATAAGTTATGGATAT+GGG - chr4_2:74371665-74371684 None:intergenic 25.0%
!!! TTTTAGAGTAGATAGAGATT+AGG - chr4_2:74371803-74371822 None:intergenic 25.0%
! AATTTGAATTTGATATGCAG+GGG + chr4_2:74371870-74371889 Msa0622000:intron 25.0%
! ATAAGACATAGAAAATGGAA+TGG - chr4_2:74371985-74372004 None:intergenic 25.0%
! TTATGTGATTATTGTGATCA+AGG + chr4_2:74372039-74372058 Msa0622000:intron 25.0%
! TTAAAATAAAATACACTGCG+AGG - chr4_2:74372181-74372200 None:intergenic 25.0%
! ATTCTATCTCCATATGAAAA+TGG - chr4_2:74372370-74372389 None:intergenic 25.0%
! AATTATAATGCGAATACATG+TGG + chr4_2:74372510-74372529 Msa0622000:intron 25.0%
!! ACTATGATCTAATTTTCTCA+TGG + chr4_2:74373466-74373485 Msa0622000:intron 25.0%
!! CTATGATCTAATTTTCTCAT+GGG + chr4_2:74373467-74373486 Msa0622000:intron 25.0%
!!! TGCTCTAAAAACACAAATAT+TGG - chr4_2:74373706-74373725 None:intergenic 25.0%
!!! ATTTGGTGTCTATTTTAGAT+TGG + chr4_2:74373819-74373838 Msa0622000:intron 25.0%
!! TGGTTTGAATGGTATATTTT+TGG + chr4_2:74373847-74373866 Msa0622000:intron 25.0%
! AGAGCTAATATAACAAAACT+TGG - chr4_2:74373986-74374005 None:intergenic 25.0%
!!! TTGAGATTGTTTGTTATACA+TGG + chr4_2:74374366-74374385 Msa0622000:three_prime_UTR 25.0%
!!! TTTTAGTTATCTACTTAGAG+AGG + chr4_2:74374438-74374457 Msa0622000:three_prime_UTR 25.0%
! TTTAGTTATCTACTTAGAGA+GGG + chr4_2:74374439-74374458 Msa0622000:three_prime_UTR 25.0%
!! TTGCCTTTTAGAAGAAAAGA+CGG + chr4_2:74370832-74370851 Msa0622000:intron 30.0%
ATCATTCACTTTGTAACTGA+CGG - chr4_2:74371005-74371024 None:intergenic 30.0%
TGTTGCATACATATGTGATA+AGG + chr4_2:74371458-74371477 Msa0622000:intron 30.0%
! TGGACACATATATCTTTTTC+TGG - chr4_2:74371492-74371511 None:intergenic 30.0%
!! AACTGTCGATGAATTTTAAC+TGG - chr4_2:74371532-74371551 None:intergenic 30.0%
GGGTTTATAAGTTATGGATA+TGG - chr4_2:74371666-74371685 None:intergenic 30.0%
! TGTCTAGGGTTTATAAGTTA+TGG - chr4_2:74371672-74371691 None:intergenic 30.0%
!! GTCTTCTCTGTATTTAGTTT+TGG + chr4_2:74371839-74371858 Msa0622000:intron 30.0%
! GATATCATTGGATTTAGGTT+CGG - chr4_2:74371939-74371958 None:intergenic 30.0%
AGGTAGATATCATTGGATTT+AGG - chr4_2:74371944-74371963 None:intergenic 30.0%
TTGGAACTAATTGTATTCCT+TGG - chr4_2:74372142-74372161 None:intergenic 30.0%
AATTATAGTCCTAGACCTTA+CGG - chr4_2:74372314-74372333 None:intergenic 30.0%
! ACTTTTCAATGTATCAGGAA+TGG - chr4_2:74372411-74372430 None:intergenic 30.0%
ATAGCTTAAAACACACACTA+AGG - chr4_2:74372559-74372578 None:intergenic 30.0%
! AATTTTATTCCTGGACCTTA+TGG - chr4_2:74372620-74372639 None:intergenic 30.0%
! GTTGGAACTAATTTTATTCC+TGG - chr4_2:74372629-74372648 None:intergenic 30.0%
ATGCATATACTTAGTCCTAA+TGG - chr4_2:74372690-74372709 None:intergenic 30.0%
! AAATGTGTTTTCGATCAACT+TGG - chr4_2:74372758-74372777 None:intergenic 30.0%
GTTGGAACTAATTATATTCC+TGG - chr4_2:74372837-74372856 None:intergenic 30.0%
GTACAATTGATTATATCCAG+AGG - chr4_2:74372875-74372894 None:intergenic 30.0%
!! TAGGTGTTTGTTGTTGATAT+AGG + chr4_2:74373010-74373029 Msa0622000:intron 30.0%
TGGTTAAAAGTAACATCACT+GGG - chr4_2:74373046-74373065 None:intergenic 30.0%
ATGGTTAAAAGTAACATCAC+TGG - chr4_2:74373047-74373066 None:intergenic 30.0%
ATCAACTTTGACAGAGAAAT+TGG - chr4_2:74373358-74373377 None:intergenic 30.0%
TATTAAAAATTGCTGCCCTT+AGG + chr4_2:74373571-74373590 Msa0622000:CDS 30.0%
!!! AAGAGATTTTGGTGTCTATT+TGG + chr4_2:74373802-74373821 Msa0622000:intron 30.0%
!! TCTATTTTAGATTGGAGACT+TGG + chr4_2:74373827-74373846 Msa0622000:intron 30.0%
! AAGCCTTATGTAAGATCAAA+GGG + chr4_2:74374183-74374202 Msa0622000:CDS 30.0%
! GAAGTATCAAAACTGTAGAA+AGG - chr4_2:74374284-74374303 None:intergenic 30.0%
ATTTGATGTCTGCCAATAAA+TGG + chr4_2:74374406-74374425 Msa0622000:three_prime_UTR 30.0%
TTTGATGTCTGCCAATAAAT+GGG + chr4_2:74374407-74374426 Msa0622000:three_prime_UTR 30.0%
! CATTACTCTTTTACCAATCA+TGG + chr4_2:74374485-74374504 Msa0622000:three_prime_UTR 30.0%
!! AATAACGTGTTGCTTAGATT+TGG + chr4_2:74374544-74374563 Msa0622000:three_prime_UTR 30.0%
! CTTCTAAAAGGCAAAACCTT+GGG - chr4_2:74370826-74370845 None:intergenic 35.0%
! TCTTCTAAAAGGCAAAACCT+TGG - chr4_2:74370827-74370846 None:intergenic 35.0%
! TCTCCGTCTTTTCTTCTAAA+AGG - chr4_2:74370838-74370857 None:intergenic 35.0%
GAAGGGGATTAAAAATGTCA+AGG + chr4_2:74370894-74370913 Msa0622000:intron 35.0%
TCATTCACTTTGTAACTGAC+GGG - chr4_2:74371004-74371023 None:intergenic 35.0%
!! TCTAACTTTCGTTTTGGACT+GGG - chr4_2:74371639-74371658 None:intergenic 35.0%
!! TTCTAACTTTCGTTTTGGAC+TGG - chr4_2:74371640-74371659 None:intergenic 35.0%
TCAATTACCATTGTAGCTCA+GGG - chr4_2:74371774-74371793 None:intergenic 35.0%
ATCAATTACCATTGTAGCTC+AGG - chr4_2:74371775-74371794 None:intergenic 35.0%
!! AATTGTATTCCTTGGCCTTA+CGG - chr4_2:74372134-74372153 None:intergenic 35.0%
ATACTTAGTCCTAATGGTGA+TGG - chr4_2:74372684-74372703 None:intergenic 35.0%
AATTATATTCCTGGACCTTC+CGG - chr4_2:74372828-74372847 None:intergenic 35.0%
! TAAGGATTTGGCTTCATGAT+AGG + chr4_2:74372991-74373010 Msa0622000:intron 35.0%
TGTTGTTGATATAGGACTTG+AGG + chr4_2:74373018-74373037 Msa0622000:intron 35.0%
TCATGTAATCAGCATTAGCA+TGG - chr4_2:74373066-74373085 None:intergenic 35.0%
TGCAACACATGGAATTAGAA+TGG - chr4_2:74373241-74373260 None:intergenic 35.0%
TATATCGCTTCCTTGTTAGA+AGG + chr4_2:74373269-74373288 Msa0622000:CDS 35.0%
AACTTTGACAGAGAAATTGG+AGG - chr4_2:74373355-74373374 None:intergenic 35.0%
! AAAGTTGATCGAGTACATGA+AGG + chr4_2:74373369-74373388 Msa0622000:CDS 35.0%
! AAGTTGATCGAGTACATGAA+GGG + chr4_2:74373370-74373389 Msa0622000:CDS 35.0%
ATGGGATTATTGTGTTATGC+AGG + chr4_2:74373485-74373504 Msa0622000:intron 35.0%
GATTATTGTGTTATGCAGGA+CGG + chr4_2:74373489-74373508 Msa0622000:intron 35.0%
! GGGCAGCAATTTTTAATACT+GGG - chr4_2:74373569-74373588 None:intergenic 35.0%
! AGGGCAGCAATTTTTAATAC+TGG - chr4_2:74373570-74373589 None:intergenic 35.0%
TAATGACGCAATGGATAGTA+AGG - chr4_2:74373741-74373760 None:intergenic 35.0%
ATCCATTGCGTCATTATGAT+TGG + chr4_2:74373745-74373764 Msa0622000:intron 35.0%
TCCATTGCGTCATTATGATT+GGG + chr4_2:74373746-74373765 Msa0622000:intron 35.0%
TTGGCTTCATAAAAGCTTGT+TGG - chr4_2:74374055-74374074 None:intergenic 35.0%
ATCTTACATAAGGCTTGGAA+TGG - chr4_2:74374179-74374198 None:intergenic 35.0%
CTTTGATCTTACATAAGGCT+TGG - chr4_2:74374184-74374203 None:intergenic 35.0%
! CAAGCCTTATGTAAGATCAA+AGG + chr4_2:74374182-74374201 Msa0622000:CDS 35.0%
CTTCCCTTTGATCTTACATA+AGG - chr4_2:74374189-74374208 None:intergenic 35.0%
CTTATGTAAGATCAAAGGGA+AGG + chr4_2:74374187-74374206 Msa0622000:CDS 35.0%
! ACTCTTTTACCAATCATGGT+TGG + chr4_2:74374489-74374508 Msa0622000:three_prime_UTR 35.0%
AAAGGCAAAACCTTGGGATT+TGG - chr4_2:74370820-74370839 None:intergenic 40.0%
! GTGGAAGCCCATTACAATTT+TGG - chr4_2:74371422-74371441 None:intergenic 40.0%
TGCTGTTCACACATTGTGTT+TGG - chr4_2:74371599-74371618 None:intergenic 40.0%
! GGGCTTTCTAACTTTCGTTT+TGG - chr4_2:74371645-74371664 None:intergenic 40.0%
GAGCTTGAGGTAGATATCAT+TGG - chr4_2:74371951-74371970 None:intergenic 40.0%
!! CCATATGAAAATGGACTGAG+AGG - chr4_2:74372361-74372380 None:intergenic 40.0%
! CCTCTCAGTCCATTTTCATA+TGG + chr4_2:74372358-74372377 Msa0622000:intron 40.0%
ATAGAATAGCTTCTTCAGCC+AGG + chr4_2:74372383-74372402 Msa0622000:intron 40.0%
AATGTATCAGGAATGGTTCC+TGG - chr4_2:74372404-74372423 None:intergenic 40.0%
ATAGCTGATTGTGCAACACA+TGG - chr4_2:74373252-74373271 None:intergenic 40.0%
GACTGACAGCAATTTCAATG+CGG + chr4_2:74373291-74373310 Msa0622000:CDS 40.0%
TTGACAGAGAAATTGGAGGT+CGG - chr4_2:74373351-74373370 None:intergenic 40.0%
AGTTGATCGAGTACATGAAG+GGG + chr4_2:74373371-74373390 Msa0622000:CDS 40.0%
GTTATGCAGGACGGTAAAAT+TGG + chr4_2:74373498-74373517 Msa0622000:intron 40.0%
!! GGTAAAATTGGTGTCGTTGT+GGG + chr4_2:74373510-74373529 Msa0622000:CDS 40.0%
!! GTAAAATTGGTGTCGTTGTG+GGG + chr4_2:74373511-74373530 Msa0622000:CDS 40.0%
!! TAAAATTGGTGTCGTTGTGG+GGG + chr4_2:74373512-74373531 Msa0622000:CDS 40.0%
GGCTGTAACAGATGATATCA+GGG + chr4_2:74373533-74373552 Msa0622000:CDS 40.0%
!! GGGCAAGTTGATCAAATGTT+AGG - chr4_2:74373644-74373663 None:intergenic 40.0%
TCCCAATCATAATGACGCAA+TGG - chr4_2:74373750-74373769 None:intergenic 40.0%
! GATTGGAGACTTGGTTTGAA+TGG + chr4_2:74373836-74373855 Msa0622000:intron 40.0%
TTCCTGTGAGTAGTTGTGAT+GGG + chr4_2:74373936-74373955 Msa0622000:intron 40.0%
TGGTAAGCTCAACATAACCA+AGG - chr4_2:74373966-74373985 None:intergenic 40.0%
TTCCTGTGAGTAGTTGTGAT+GGG + chr4_2:74373936-74373955 Msa0622000:intron 40.0%
TGGTAAGCTCAACATAACCA+AGG - chr4_2:74373966-74373985 None:intergenic 40.0%
AGGGAAGCAGTAAAACACTT+TGG + chr4_2:74374129-74374148 Msa0622000:CDS 40.0%
AAAGGGAAGGAAACAAGAGA+AGG + chr4_2:74374200-74374219 Msa0622000:CDS 40.0%
AGAGGAAGAGTAGAGGATTT+AGG + chr4_2:74374232-74374251 Msa0622000:CDS 40.0%
GAGGAAGAGTAGAGGATTTA+GGG + chr4_2:74374233-74374252 Msa0622000:CDS 40.0%
TTACATTCGCCAACCATGAT+TGG - chr4_2:74374501-74374520 None:intergenic 40.0%
TACCATCACCCAGAAATTGC+AGG + chr4_2:74370769-74370788 Msa0622000:intron 45.0%
GTTCACACATTGTGTTTGGC+TGG - chr4_2:74371595-74371614 None:intergenic 45.0%
GGAAATGAAGCTCGTGTCTA+GGG - chr4_2:74371686-74371705 None:intergenic 45.0%
GCGTATTTATAGGCGGAACA+CGG - chr4_2:74371707-74371726 None:intergenic 45.0%
CGCGAATGCGTATTTATAGG+CGG - chr4_2:74371714-74371733 None:intergenic 45.0%
CGCCTATAAATACGCATTCG+CGG + chr4_2:74371712-74371731 Msa0622000:intron 45.0%
AGCCGCGAATGCGTATTTAT+AGG - chr4_2:74371717-74371736 None:intergenic 45.0%
! GGATTTAGGTTCGGTTCGTT+TGG - chr4_2:74371930-74371949 None:intergenic 45.0%
AAATGGAATGGACCTTGACG+AGG - chr4_2:74371973-74371992 None:intergenic 45.0%
AATGTGATCCCAGCTCTATG+AGG + chr4_2:74372108-74372127 Msa0622000:intron 45.0%
AGGCTCAGACAAATGTGTGT+TGG - chr4_2:74372161-74372180 None:intergenic 45.0%
AATGTGATCCCAGCTCTATG+AGG + chr4_2:74372108-74372127 Msa0622000:intron 45.0%
AGGCTCAGACAAATGTGTGT+TGG - chr4_2:74372161-74372180 None:intergenic 45.0%
CCTTATGGTCTCATAGAGCT+GGG - chr4_2:74372605-74372624 None:intergenic 45.0%
ACCTTATGGTCTCATAGAGC+TGG - chr4_2:74372606-74372625 None:intergenic 45.0%
TCTATGAGACCATAAGGTCC+AGG + chr4_2:74372608-74372627 Msa0622000:intron 45.0%
TCTCTCACACCATCACCATT+AGG + chr4_2:74372672-74372691 Msa0622000:intron 45.0%
AGGCTCAGACAAATGTGTGT+TGG - chr4_2:74372161-74372180 None:intergenic 45.0%
TGCTGTCAGTCCTTCTAACA+AGG - chr4_2:74373282-74373301 None:intergenic 45.0%
!! CGGTAAAATTGGTGTCGTTG+TGG + chr4_2:74373509-74373528 Msa0622000:CDS 45.0%
GGGCTGTAACAGATGATATC+AGG + chr4_2:74373532-74373551 Msa0622000:CDS 45.0%
ACGTGCAAGAATAGAGAAGG+CGG + chr4_2:74373608-74373627 Msa0622000:CDS 45.0%
TCATACCGTGTTCTGTCCAA+GGG - chr4_2:74373676-74373695 None:intergenic 45.0%
CTTCCTGTGAGTAGTTGTGA+TGG + chr4_2:74373935-74373954 Msa0622000:intron 45.0%
ATCCCATCACAACTACTCAC+AGG - chr4_2:74373941-74373960 None:intergenic 45.0%
! TAGTTGTGATGGGATAGCCT+TGG + chr4_2:74373946-74373965 Msa0622000:intron 45.0%
CTTCCTGTGAGTAGTTGTGA+TGG + chr4_2:74373935-74373954 Msa0622000:intron 45.0%
ATCCCATCACAACTACTCAC+AGG - chr4_2:74373941-74373960 None:intergenic 45.0%
! TAGTTGTGATGGGATAGCCT+TGG + chr4_2:74373946-74373965 Msa0622000:intron 45.0%
TGAATTCAGGTCCTCCTAAG+AGG + chr4_2:74374093-74374112 Msa0622000:intron 45.0%
TAGCATTCTTTGGGCCTCTT+AGG - chr4_2:74374110-74374129 None:intergenic 45.0%
TAAGAGGCCCAAAGAATGCT+AGG + chr4_2:74374109-74374128 Msa0622000:CDS 45.0%
AAGAGGCCCAAAGAATGCTA+GGG + chr4_2:74374110-74374129 Msa0622000:CDS 45.0%
CTGCTTCCCTAGCATTCTTT+GGG - chr4_2:74374119-74374138 None:intergenic 45.0%
ACTGCTTCCCTAGCATTCTT+TGG - chr4_2:74374120-74374139 None:intergenic 45.0%
TCTACTCTTCCTCTTTCCTC+TGG - chr4_2:74374226-74374245 None:intergenic 45.0%
AGAGGAAAGAGGAAGAGTAG+AGG + chr4_2:74374225-74374244 Msa0622000:CDS 45.0%
!!! ATATAAATTTTTATTTTTCA+AGG - chr4_2:74371191-74371210 None:intergenic 5.0%
!!! ATTGTATTTTTTTATATTAT+TGG + chr4_2:74371209-74371228 Msa0622000:intron 5.0%
!! TAAATAAATAAATACAAAAA+CGG - chr4_2:74372018-74372037 None:intergenic 5.0%
!! GAGGTTGGCCTGCAATTTCT+GGG - chr4_2:74370780-74370799 None:intergenic 50.0%
! CCTCTAAGAAGCAACGAGGT+TGG - chr4_2:74370795-74370814 None:intergenic 50.0%
CCAACCTCGTTGCTTCTTAG+AGG + chr4_2:74370792-74370811 Msa0622000:intron 50.0%
!! CTTAGAGGCACCAAATCCCA+AGG + chr4_2:74370807-74370826 Msa0622000:intron 50.0%
TGGCAGCAGTTAACTGTCGA+TGG - chr4_2:74371512-74371531 None:intergenic 50.0%
CGGAAATGAAGCTCGTGTCT+AGG - chr4_2:74371687-74371706 None:intergenic 50.0%
! ATTGTAGCTCAGGGTTCTGG+AGG - chr4_2:74371765-74371784 None:intergenic 50.0%
TCCAGAACCCTGAGCTACAA+TGG + chr4_2:74371764-74371783 Msa0622000:intron 50.0%
ACCATTGTAGCTCAGGGTTC+TGG - chr4_2:74371768-74371787 None:intergenic 50.0%
AGGGGATCGATCTCAAAGCT+GGG + chr4_2:74371888-74371907 Msa0622000:intron 50.0%
TCTATGAGGCCGTAAGGTCT+AGG + chr4_2:74372302-74372321 Msa0622000:intron 50.0%
CCCAGCTCTATGAGACCATA+AGG + chr4_2:74372602-74372621 Msa0622000:intron 50.0%
AGGCTCAGACAAGTGTGTGT+TGG - chr4_2:74372647-74372666 None:intergenic 50.0%
! TGATGGTGTGAGAGATGCAG+AGG - chr4_2:74372667-74372686 None:intergenic 50.0%
TGATCCCAGCTCTATGAGAC+CGG + chr4_2:74372598-74372617 Msa0622000:intron 50.0%
CACACATTTGTCTGAGCCTC+TGG + chr4_2:74372162-74372181 Msa0622000:intron 50.0%
CAAGCGCTTGTTCATGAGCA+AGG + chr4_2:74373321-74373340 Msa0622000:CDS 50.0%
GATCGAGTACATGAAGGGGA+AGG + chr4_2:74373375-74373394 Msa0622000:CDS 50.0%
TGCCCTTAGGTTCACAGAGA+CGG + chr4_2:74373584-74373603 Msa0622000:CDS 50.0%
TGCCGTCTCTGTGAACCTAA+GGG - chr4_2:74373589-74373608 None:intergenic 50.0%
GGCACGTGCAAGAATAGAGA+AGG + chr4_2:74373605-74373624 Msa0622000:CDS 50.0%
CGTGCAAGAATAGAGAAGGC+GGG + chr4_2:74373609-74373628 Msa0622000:CDS 50.0%
CATACCGTGTTCTGTCCAAG+GGG - chr4_2:74373675-74373694 None:intergenic 50.0%
CTCATACCGTGTTCTGTCCA+AGG - chr4_2:74373677-74373696 None:intergenic 50.0%
CATTCTTTGGGCCTCTTAGG+AGG - chr4_2:74374107-74374126 None:intergenic 50.0%
AAACACTTTGGTCGTGCTCC+TGG + chr4_2:74374141-74374160 Msa0622000:CDS 50.0%
TAAGGCTTGGAATGGCTGTG+TGG - chr4_2:74374171-74374190 None:intergenic 50.0%
AGGAAACAAGAGAAGGCCAG+AGG + chr4_2:74374207-74374226 Msa0622000:CDS 50.0%
AAGAGAAGGCCAGAGGAAAG+AGG + chr4_2:74374214-74374233 Msa0622000:CDS 50.0%
! GGCCTGCAATTTCTGGGTGA+TGG - chr4_2:74370774-74370793 None:intergenic 55.0%
!! CGAGGTTGGCCTGCAATTTC+TGG - chr4_2:74370781-74370800 None:intergenic 55.0%
! GGTGCCTCTAAGAAGCAACG+AGG - chr4_2:74370799-74370818 None:intergenic 55.0%
CAGGGGATCGATCTCAAAGC+TGG + chr4_2:74371887-74371906 Msa0622000:intron 55.0%
GGGGATCGATCTCAAAGCTG+GGG + chr4_2:74371889-74371908 Msa0622000:intron 55.0%
GGGATCGATCTCAAAGCTGG+GGG + chr4_2:74371890-74371909 Msa0622000:CDS 55.0%
CTACCTCAAGCTCCTCGTCA+AGG + chr4_2:74371958-74371977 Msa0622000:CDS 55.0%
CCTTACGGCCTCATAGAGCT+GGG - chr4_2:74372119-74372138 None:intergenic 55.0%
TCTATGAGGCCGTAAGGCCA+AGG + chr4_2:74372122-74372141 Msa0622000:intron 55.0%
CCTTACGGCCTCATAGAGCT+GGG - chr4_2:74372119-74372138 None:intergenic 55.0%
ACCTTACGGCCTCATAGAGC+TGG - chr4_2:74372300-74372319 None:intergenic 55.0%
CCTTCCGGTCTCATAGAGCT+GGG - chr4_2:74372813-74372832 None:intergenic 55.0%
ACCTTCCGGTCTCATAGAGC+TGG - chr4_2:74372814-74372833 None:intergenic 55.0%
TCTATGAGACCGGAAGGTCC+AGG + chr4_2:74372816-74372835 Msa0622000:intron 55.0%
GTGCCGTCTCTGTGAACCTA+AGG - chr4_2:74373590-74373609 None:intergenic 55.0%
GCAAGAATAGAGAAGGCGGG+TGG + chr4_2:74373612-74373631 Msa0622000:CDS 55.0%
! CTGTCCAAGGGGAGCTCTAA+GGG - chr4_2:74373664-74373683 None:intergenic 55.0%
TCTGTCCAAGGGGAGCTCTA+AGG - chr4_2:74373665-74373684 None:intergenic 55.0%
AGCTCCCCTTGGACAGAACA+CGG + chr4_2:74373668-74373687 Msa0622000:CDS 55.0%
GGACCTTGACGAGGAGCTTG+AGG - chr4_2:74371964-74371983 None:intergenic 60.0%
CCCAGCTCTATGAGGCCGTA+AGG + chr4_2:74372116-74372135 Msa0622000:intron 60.0%
GCCTTACGGCCTCATAGAGC+TGG - chr4_2:74372120-74372139 None:intergenic 60.0%
CCCAGCTCTATGAGGCCGTA+AGG + chr4_2:74372116-74372135 Msa0622000:intron 60.0%
CCCAGCTCTATGAGACCGGA+AGG + chr4_2:74372810-74372829 Msa0622000:intron 60.0%
CTTGCCCTTAGAGCTCCCCT+TGG + chr4_2:74373657-74373676 Msa0622000:CDS 60.0%
GAATGGCTGTGTGGCACACC+AGG - chr4_2:74374162-74374181 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74370728 74374573 74370728 ID=Msa0622000;Name=Msa0622000
chr4_2 mRNA 74370728 74374573 74370728 ID=Msa0622000-mRNA-1;Parent=Msa0622000;Name=Msa0622000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.8|0.8|0.25|0.8|5|313|189
chr4_2 exon 74370728 74370736 74370728 ID=Msa0622000-mRNA-1:exon:22389;Parent=Msa0622000-mRNA-1
chr4_2 exon 74371890 74371979 74371890 ID=Msa0622000-mRNA-1:exon:22390;Parent=Msa0622000-mRNA-1
chr4_2 exon 74373268 74373396 74373268 ID=Msa0622000-mRNA-1:exon:22391;Parent=Msa0622000-mRNA-1
chr4_2 exon 74373507 74373689 74373507 ID=Msa0622000-mRNA-1:exon:22392;Parent=Msa0622000-mRNA-1
chr4_2 exon 74374102 74374573 74374102 ID=Msa0622000-mRNA-1:exon:22393;Parent=Msa0622000-mRNA-1
chr4_2 CDS 74370728 74370736 74370728 ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1
chr4_2 CDS 74371890 74371979 74371890 ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1
chr4_2 CDS 74373268 74373396 74373268 ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1
chr4_2 CDS 74373507 74373689 74373507 ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1
chr4_2 CDS 74374102 74374260 74374102 ID=Msa0622000-mRNA-1:cds;Parent=Msa0622000-mRNA-1
chr4_2 three_prime_UTR 74374261 74374573 74374261 ID=Msa0622000-mRNA-1:three_prime_utr;Parent=Msa0622000-mRNA-1
Gene Sequence

>Msa0622000

ATGTTCAATGGGATCGATCTCAAAGCTGGGGGTAAGAGCAAAAACACCAAACGAACCGAACCTAAATCCAATGATATCTACCTCAAGCTCCTCGTCAAGCTATATCGCTTCCTTGTTAGAAGGACTGACAGCAATTTCAATGCGGTAATACTCAAGCGCTTGTTCATGAGCAAGGTCAACCGACCTCCAATTTCTCTGTCAAAGTTGATCGAGTACATGAAGGGGAAGGACGGTAAAATTGGTGTCGTTGTGGGGGCTGTAACAGATGATATCAGGGTAAATGAAGTCCCAGTATTAAAAATTGCTGCCCTTAGGTTCACAGAGACGGCACGTGCAAGAATAGAGAAGGCGGGTGGTGAATGCCTAACATTTGATCAACTTGCCCTTAGAGCTCCCCTTGGACAGAACACGGTCCTCCTAAGAGGCCCAAAGAATGCTAGGGAAGCAGTAAAACACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCATTCCAAGCCTTATGTAAGATCAAAGGGAAGGAAACAAGAGAAGGCCAGAGGAAAGAGGAAGAGTAGAGGATTTAGGGTTTGA

Protein sequence

>Msa0622000

MFNGIDLKAGGKSKNTKRTEPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPISLSKLIEYMKGKDGKIGVVVGAVTDDIRVNEVPVLKIAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHSKPYVRSKGRKQEKARGKRKSRGFRV*