Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622380 | XP_039689660.1 | 97.543 | 407 | 10 | 0 | 1 | 407 | 1 | 407 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622380 | sp|Q42381|HLS1_ARATH | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 6.90e-68 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622380 | A0A396IJ64 | 97.543 | 407 | 10 | 0 | 1 | 407 | 1 | 407 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0622380 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622380 | Msa1419050 | 0.813971 | 1.953145e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622380 | MtrunA17_Chr4g0068331 | 97.543 | 407 | 10 | 0 | 1 | 407 | 1 | 407 | 0.0 | 824 |
| Msa0622380 | MtrunA17_Chr3g0105631 | 37.037 | 405 | 219 | 15 | 13 | 406 | 8 | 387 | 1.89e-72 | 232 |
| Msa0622380 | MtrunA17_Chr4g0001411 | 34.634 | 410 | 238 | 11 | 8 | 407 | 20 | 409 | 1.15e-63 | 209 |
| Msa0622380 | MtrunA17_Chr4g0053961 | 33.571 | 420 | 241 | 12 | 11 | 407 | 7 | 411 | 2.51e-62 | 206 |
| Msa0622380 | MtrunA17_Chr5g0401351 | 33.976 | 415 | 242 | 12 | 7 | 406 | 5 | 402 | 2.26e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622380 | AT4G37580.1 | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 7.01e-69 | 223 |
| Msa0622380 | AT2G23060.1 | 33.570 | 423 | 241 | 13 | 11 | 407 | 5 | 413 | 6.86e-66 | 216 |
| Msa0622380 | AT4G37580.2 | 33.994 | 353 | 204 | 10 | 74 | 407 | 4 | 346 | 6.47e-54 | 182 |
| Msa0622380 | AT2G30090.1 | 34.146 | 410 | 215 | 20 | 13 | 406 | 15 | 385 | 4.80e-53 | 181 |
| Msa0622380 | AT5G67430.1 | 33.007 | 409 | 230 | 13 | 11 | 406 | 8 | 385 | 2.56e-52 | 179 |
| Msa0622380 | AT5G67430.2 | 31.861 | 317 | 196 | 8 | 91 | 406 | 23 | 320 | 3.95e-38 | 140 |
| Msa0622380 | AT2G23060.2 | 30.208 | 288 | 188 | 7 | 124 | 407 | 1 | 279 | 8.07e-36 | 133 |
Find 85 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTGTGCAAACTCCTTC+TGG | 0.261524 | 4_2:+74806354 | Msa0622380:CDS |
| GAGCTTGTTGGAGTTGTTAA+AGG | 0.270934 | 4_2:+74806324 | Msa0622380:CDS |
| GATTAATGGGACTACTAAAA+AGG | 0.272190 | 4_2:+74806037 | Msa0622380:CDS |
| AGGGTTGTTATAACTGAGTT+AGG | 0.299823 | 4_2:+74807383 | Msa0622380:CDS |
| GTGACCCTTTATCTAGGATT+AGG | 0.304028 | 4_2:+74806093 | Msa0622380:CDS |
| AGTTGCATTTGTTGGTGAAT+AGG | 0.308058 | 4_2:-74806800 | None:intergenic |
| TTTCAAGATTCTTGTGTAGA+AGG | 0.309351 | 4_2:-74806937 | None:intergenic |
| TAGAACCTAATCCTAGATAA+AGG | 0.318214 | 4_2:-74806098 | None:intergenic |
| ATCTAATGGATACAACTCTT+TGG | 0.333407 | 4_2:-74806961 | None:intergenic |
| AGGAACTGTACTGAGATTAA+TGG | 0.340573 | 4_2:+74806023 | Msa0622380:CDS |
| GTTGGTGAATAGGTTATTAG+AGG | 0.345184 | 4_2:-74806790 | None:intergenic |
| TTCTTAGAAATGTGGTTTGT+TGG | 0.348075 | 4_2:-74806873 | None:intergenic |
| ATGTGTAACAACAGTACATT+TGG | 0.356097 | 4_2:+74807254 | Msa0622380:CDS |
| AGAATAATGTCCATATCTAA+TGG | 0.380464 | 4_2:-74806975 | None:intergenic |
| GCGGGCTAATGGAATCAATA+TGG | 0.381668 | 4_2:+74807321 | Msa0622380:CDS |
| AGAGAATCTTGGCGGGCTAA+TGG | 0.382594 | 4_2:+74807310 | Msa0622380:CDS |
| TCTTAGAAATGTGGTTTGTT+GGG | 0.383397 | 4_2:-74806872 | None:intergenic |
| GTTATAACTGAGTTAGGGTT+TGG | 0.401121 | 4_2:+74807389 | Msa0622380:CDS |
| GGAACTGTACTGAGATTAAT+GGG | 0.401226 | 4_2:+74806024 | Msa0622380:CDS |
| TTCAAGATGGGTTGTATACT+AGG | 0.416953 | 4_2:+74806384 | Msa0622380:CDS |
| TGATGATGAAAATGATGAAT+TGG | 0.425086 | 4_2:+74807499 | Msa0622380:CDS |
| TGGAGGTTTACATCAAGATT+AGG | 0.428439 | 4_2:+74807341 | Msa0622380:CDS |
| CATGATAATTACCTGTGTAT+AGG | 0.429059 | 4_2:-74806420 | None:intergenic |
| TTCTGGATCACTCTTCAAGA+TGG | 0.429973 | 4_2:+74806371 | Msa0622380:CDS |
| ATTGAAATAGTTGCATTTGT+TGG | 0.433692 | 4_2:-74806808 | None:intergenic |
| GTTGAAAACAAGGAGCTTGT+TGG | 0.434978 | 4_2:+74806312 | Msa0622380:CDS |
| AGAGTTGTATCCATTAGATA+TGG | 0.437070 | 4_2:+74806965 | Msa0622380:CDS |
| AAATTTACTGTGCAGGAGAA+AGG | 0.442722 | 4_2:+74806674 | Msa0622380:intron |
| GTAATGGTGACCCTTTATCT+AGG | 0.452354 | 4_2:+74806087 | Msa0622380:CDS |
| GGAATGTGTTTGTTGATCCT+AGG | 0.455878 | 4_2:+74807546 | Msa0622380:CDS |
| CAAAATTATTTCAACCACTT+AGG | 0.457975 | 4_2:+74807165 | Msa0622380:CDS |
| GGGTTGTTATAACTGAGTTA+GGG | 0.463044 | 4_2:+74807384 | Msa0622380:CDS |
| CTATCCCCTTCGTGTTATGT+TGG | 0.463391 | 4_2:+74806118 | Msa0622380:CDS |
| TAGCATCCACTCTTCAATTG+AGG | 0.471060 | 4_2:-74806718 | None:intergenic |
| GTTAGTTATTACAAAGATGA+AGG | 0.474099 | 4_2:+74807026 | Msa0622380:CDS |
| CATGGAGAGGGAGAGAATCT+TGG | 0.478715 | 4_2:+74807299 | Msa0622380:CDS |
| TGTGTATAGGAGAGACTCTA+AGG | 0.479289 | 4_2:-74806407 | None:intergenic |
| AATAACTAACCCAAGTTCCT+AGG | 0.480250 | 4_2:-74807013 | None:intergenic |
| TCTGGATCACTCTTCAAGAT+GGG | 0.484366 | 4_2:+74806372 | Msa0622380:CDS |
| GAATGTGTTTGTTGATCCTA+GGG | 0.487462 | 4_2:+74807547 | Msa0622380:CDS |
| AGAACCTAATCCTAGATAAA+GGG | 0.491131 | 4_2:-74806097 | None:intergenic |
| CACGACATAGAATCAATTTG+AGG | 0.498622 | 4_2:-74807434 | None:intergenic |
| AATTTACTGTGCAGGAGAAA+GGG | 0.506218 | 4_2:+74806675 | Msa0622380:intron |
| TGTGTAACAACAGTACATTT+GGG | 0.506653 | 4_2:+74807255 | Msa0622380:CDS |
| AACAAACCACATTTCTAAGA+AGG | 0.512894 | 4_2:+74806875 | Msa0622380:CDS |
| GATAGAGACGTTAAAGTGGT+GGG | 0.517566 | 4_2:+74805990 | Msa0622380:CDS |
| TTGGGAAACTAGTTGGTGGA+TGG | 0.520506 | 4_2:-74806854 | None:intergenic |
| TTCACCAACATGATGAGTAA+TGG | 0.521767 | 4_2:+74806071 | Msa0622380:CDS |
| CTTTATGGACTTCATGGAGA+GGG | 0.530822 | 4_2:+74807287 | Msa0622380:CDS |
| TGGTTTGTTGGGAAACTAGT+TGG | 0.533846 | 4_2:-74806861 | None:intergenic |
| AAGTGGTGGGGAAGCTTGAA+AGG | 0.538039 | 4_2:+74806003 | Msa0622380:CDS |
| AGCTGAGATGGTTGAAAACA+AGG | 0.541254 | 4_2:+74806302 | Msa0622380:CDS |
| AAAGTACAACAAGCTCATCA+TGG | 0.542735 | 4_2:+74807084 | Msa0622380:CDS |
| AAAACTCAGCCTAGGAACTT+GGG | 0.550630 | 4_2:+74807004 | Msa0622380:CDS |
| TTTGTTGGGAAACTAGTTGG+TGG | 0.550774 | 4_2:-74806858 | None:intergenic |
| TGACATCCTTCTTAGAAATG+TGG | 0.553319 | 4_2:-74806881 | None:intergenic |
| TGATGAAAATGATGAATTGG+TGG | 0.563601 | 4_2:+74807502 | Msa0622380:CDS |
| TGAGGAACATGGTTTACAAG+TGG | 0.564375 | 4_2:-74807416 | None:intergenic |
| ATAGAGACGTTAAAGTGGTG+GGG | 0.567023 | 4_2:+74805991 | Msa0622380:CDS |
| GGAGAGGGAGAGAATCTTGG+CGG | 0.572469 | 4_2:+74807302 | Msa0622380:CDS |
| GAAGAGTGGATGCTAAGAAA+TGG | 0.583171 | 4_2:+74806726 | Msa0622380:CDS |
| TGAAGATAGAGACGTTAAAG+TGG | 0.583839 | 4_2:+74805986 | Msa0622380:CDS |
| TAGAATCAATTTGAGGAACA+TGG | 0.588050 | 4_2:-74807427 | None:intergenic |
| AGATAGAGACGTTAAAGTGG+TGG | 0.592949 | 4_2:+74805989 | Msa0622380:CDS |
| CTGTGCAGGAGAAAGGGAGT+TGG | 0.597746 | 4_2:+74806681 | Msa0622380:intron |
| GTCGCATGAAGAAACCTAAG+TGG | 0.602408 | 4_2:-74807179 | None:intergenic |
| TGCGACATTAAATCATGCAA+AGG | 0.605817 | 4_2:+74807196 | Msa0622380:CDS |
| TGGCCTGCAGGTAGCTGAGA+TGG | 0.614618 | 4_2:+74806290 | Msa0622380:intron |
| GAGAGGGAGAGAATCTTGGC+GGG | 0.615284 | 4_2:+74807303 | Msa0622380:CDS |
| GAGGTGATGAAGAGACAACT+CGG | 0.616820 | 4_2:+74807524 | Msa0622380:CDS |
| ACACACCAACATAACACGAA+GGG | 0.618929 | 4_2:-74806123 | None:intergenic |
| GTCACCATTACTCATCATGT+TGG | 0.630070 | 4_2:-74806075 | None:intergenic |
| TTGTAACCTCAATTGAAGAG+TGG | 0.632770 | 4_2:+74806712 | Msa0622380:CDS |
| CACATACAGTATAGAGAGCG+AGG | 0.638269 | 4_2:+74805944 | Msa0622380:CDS |
| TGTCGTGTATTGATGATATG+TGG | 0.645905 | 4_2:+74807450 | Msa0622380:CDS |
| AGGTGATGAAGAGACAACTC+GGG | 0.647405 | 4_2:+74807525 | Msa0622380:CDS |
| TCTTTATGGACTTCATGGAG+AGG | 0.647924 | 4_2:+74807286 | Msa0622380:CDS |
| TGAAAATGATGAATTGGTGG+AGG | 0.648658 | 4_2:+74807505 | Msa0622380:CDS |
| TTAGAGTCTCTCCTATACAC+AGG | 0.650718 | 4_2:+74806409 | Msa0622380:CDS |
| CACACCAACATAACACGAAG+GGG | 0.668902 | 4_2:-74806122 | None:intergenic |
| TACACACCAACATAACACGA+AGG | 0.672948 | 4_2:-74806124 | None:intergenic |
| GGCTAATGGAATCAATATGG+AGG | 0.674786 | 4_2:+74807324 | Msa0622380:CDS |
| ATGGAGATATATGATGAGTG+AGG | 0.681980 | 4_2:-74806835 | None:intergenic |
| GAGTCAAACATTCTCAAACA+AGG | 0.685595 | 4_2:-74807230 | None:intergenic |
| ATCTTGAAGAGTGATCCAGA+AGG | 0.751962 | 4_2:-74806369 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTAACTTGA+AGG | - | chr4_2:74807154-74807173 | None:intergenic | 15.0% |
| !!! | ATAATTTTGTTTTAACTTGA+AGG | - | chr4_2:74807154-74807173 | None:intergenic | 15.0% |
| !! | ATATAATATATATACACCTG+CGG | - | chr4_2:74806238-74806257 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | + | chr4_2:74806270-74806289 | Msa0622380:intron | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | - | chr4_2:74806665-74806684 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | + | chr4_2:74807355-74807374 | Msa0622380:CDS | 20.0% |
| !! | ATATAATATATATACACCTG+CGG | - | chr4_2:74806238-74806257 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | + | chr4_2:74806270-74806289 | Msa0622380:intron | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | - | chr4_2:74806665-74806684 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | + | chr4_2:74807355-74807374 | Msa0622380:CDS | 20.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | + | chr4_2:74806038-74806057 | Msa0622380:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | - | chr4_2:74806182-74806201 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | + | chr4_2:74806667-74806686 | Msa0622380:intron | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | - | chr4_2:74806811-74806830 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | - | chr4_2:74806978-74806997 | None:intergenic | 25.0% |
| ! | GTTAGTTATTACAAAGATGA+AGG | + | chr4_2:74807026-74807045 | Msa0622380:CDS | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | + | chr4_2:74807165-74807184 | Msa0622380:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | + | chr4_2:74807272-74807291 | Msa0622380:CDS | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | + | chr4_2:74807364-74807383 | Msa0622380:CDS | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | + | chr4_2:74807499-74807518 | Msa0622380:CDS | 25.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | + | chr4_2:74806038-74806057 | Msa0622380:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | - | chr4_2:74806182-74806201 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | + | chr4_2:74806667-74806686 | Msa0622380:intron | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | - | chr4_2:74806811-74806830 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | - | chr4_2:74806978-74806997 | None:intergenic | 25.0% |
| ! | GTTAGTTATTACAAAGATGA+AGG | + | chr4_2:74807026-74807045 | Msa0622380:CDS | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | + | chr4_2:74807165-74807184 | Msa0622380:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | + | chr4_2:74807272-74807291 | Msa0622380:CDS | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | + | chr4_2:74807364-74807383 | Msa0622380:CDS | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | + | chr4_2:74807499-74807518 | Msa0622380:CDS | 25.0% |
| GATTAATGGGACTACTAAAA+AGG | + | chr4_2:74806037-74806056 | Msa0622380:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | - | chr4_2:74806100-74806119 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | - | chr4_2:74806101-74806120 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | + | chr4_2:74806196-74806215 | Msa0622380:intron | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | - | chr4_2:74806423-74806442 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | + | chr4_2:74806421-74806440 | Msa0622380:intron | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | - | chr4_2:74806482-74806501 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | + | chr4_2:74806564-74806583 | Msa0622380:intron | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | - | chr4_2:74806875-74806894 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | - | chr4_2:74806876-74806895 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | + | chr4_2:74806875-74806894 | Msa0622380:CDS | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | - | chr4_2:74806940-74806959 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | - | chr4_2:74806964-74806983 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | + | chr4_2:74806965-74806984 | Msa0622380:CDS | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | - | chr4_2:74807081-74807100 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | - | chr4_2:74807082-74807101 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | + | chr4_2:74807102-74807121 | Msa0622380:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | + | chr4_2:74807254-74807273 | Msa0622380:CDS | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | + | chr4_2:74807255-74807274 | Msa0622380:CDS | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | + | chr4_2:74807281-74807300 | Msa0622380:CDS | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | + | chr4_2:74807363-74807382 | Msa0622380:CDS | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | - | chr4_2:74807430-74807449 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | + | chr4_2:74807502-74807521 | Msa0622380:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | + | chr4_2:74806037-74806056 | Msa0622380:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | - | chr4_2:74806100-74806119 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | - | chr4_2:74806101-74806120 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | + | chr4_2:74806196-74806215 | Msa0622380:intron | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | - | chr4_2:74806423-74806442 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | + | chr4_2:74806421-74806440 | Msa0622380:intron | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | - | chr4_2:74806482-74806501 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | + | chr4_2:74806564-74806583 | Msa0622380:intron | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | - | chr4_2:74806875-74806894 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | - | chr4_2:74806876-74806895 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | + | chr4_2:74806875-74806894 | Msa0622380:CDS | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | - | chr4_2:74806940-74806959 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | - | chr4_2:74806964-74806983 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | + | chr4_2:74806965-74806984 | Msa0622380:CDS | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | - | chr4_2:74807081-74807100 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | - | chr4_2:74807082-74807101 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | + | chr4_2:74807102-74807121 | Msa0622380:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | + | chr4_2:74807254-74807273 | Msa0622380:CDS | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | + | chr4_2:74807255-74807274 | Msa0622380:CDS | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | + | chr4_2:74807281-74807300 | Msa0622380:CDS | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | + | chr4_2:74807363-74807382 | Msa0622380:CDS | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | - | chr4_2:74807430-74807449 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | + | chr4_2:74807502-74807521 | Msa0622380:CDS | 30.0% | |
| TGAAGATAGAGACGTTAAAG+TGG | + | chr4_2:74805986-74806005 | Msa0622380:CDS | 35.0% | |
| AGGAACTGTACTGAGATTAA+TGG | + | chr4_2:74806023-74806042 | Msa0622380:CDS | 35.0% | |
| GGAACTGTACTGAGATTAAT+GGG | + | chr4_2:74806024-74806043 | Msa0622380:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | + | chr4_2:74806071-74806090 | Msa0622380:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | + | chr4_2:74806219-74806238 | Msa0622380:intron | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | + | chr4_2:74806384-74806403 | Msa0622380:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | - | chr4_2:74806572-74806591 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | - | chr4_2:74806610-74806629 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | + | chr4_2:74806674-74806693 | Msa0622380:intron | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | + | chr4_2:74806675-74806694 | Msa0622380:intron | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | + | chr4_2:74806712-74806731 | Msa0622380:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | - | chr4_2:74806767-74806786 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | - | chr4_2:74806772-74806791 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | - | chr4_2:74806793-74806812 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | - | chr4_2:74806803-74806822 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | - | chr4_2:74806838-74806857 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | - | chr4_2:74806884-74806903 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | - | chr4_2:74807016-74807035 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | + | chr4_2:74807084-74807103 | Msa0622380:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | + | chr4_2:74807196-74807215 | Msa0622380:CDS | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | - | chr4_2:74807233-74807252 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | + | chr4_2:74807341-74807360 | Msa0622380:CDS | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | + | chr4_2:74807383-74807402 | Msa0622380:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | + | chr4_2:74807384-74807403 | Msa0622380:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | + | chr4_2:74807389-74807408 | Msa0622380:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | - | chr4_2:74807437-74807456 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | + | chr4_2:74807450-74807469 | Msa0622380:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | + | chr4_2:74807467-74807486 | Msa0622380:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | + | chr4_2:74807505-74807524 | Msa0622380:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | + | chr4_2:74807547-74807566 | Msa0622380:CDS | 35.0% |
| TGAAGATAGAGACGTTAAAG+TGG | + | chr4_2:74805986-74806005 | Msa0622380:CDS | 35.0% | |
| AGGAACTGTACTGAGATTAA+TGG | + | chr4_2:74806023-74806042 | Msa0622380:CDS | 35.0% | |
| GGAACTGTACTGAGATTAAT+GGG | + | chr4_2:74806024-74806043 | Msa0622380:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | + | chr4_2:74806071-74806090 | Msa0622380:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | + | chr4_2:74806219-74806238 | Msa0622380:intron | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | + | chr4_2:74806384-74806403 | Msa0622380:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | - | chr4_2:74806572-74806591 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | - | chr4_2:74806610-74806629 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | + | chr4_2:74806674-74806693 | Msa0622380:intron | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | + | chr4_2:74806675-74806694 | Msa0622380:intron | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | + | chr4_2:74806712-74806731 | Msa0622380:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | - | chr4_2:74806767-74806786 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | - | chr4_2:74806772-74806791 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | - | chr4_2:74806793-74806812 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | - | chr4_2:74806803-74806822 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | - | chr4_2:74806838-74806857 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | - | chr4_2:74806884-74806903 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | - | chr4_2:74807016-74807035 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | + | chr4_2:74807084-74807103 | Msa0622380:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | + | chr4_2:74807196-74807215 | Msa0622380:CDS | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | - | chr4_2:74807233-74807252 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | + | chr4_2:74807341-74807360 | Msa0622380:CDS | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | + | chr4_2:74807383-74807402 | Msa0622380:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | + | chr4_2:74807384-74807403 | Msa0622380:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | + | chr4_2:74807389-74807408 | Msa0622380:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | - | chr4_2:74807437-74807456 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | + | chr4_2:74807450-74807469 | Msa0622380:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | + | chr4_2:74807467-74807486 | Msa0622380:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | + | chr4_2:74807505-74807524 | Msa0622380:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | + | chr4_2:74807547-74807566 | Msa0622380:CDS | 35.0% |
| AGATAGAGACGTTAAAGTGG+TGG | + | chr4_2:74805989-74806008 | Msa0622380:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | + | chr4_2:74805990-74806009 | Msa0622380:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | + | chr4_2:74805991-74806010 | Msa0622380:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | - | chr4_2:74806078-74806097 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | + | chr4_2:74806087-74806106 | Msa0622380:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | + | chr4_2:74806093-74806112 | Msa0622380:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | - | chr4_2:74806126-74806145 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | - | chr4_2:74806127-74806146 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | + | chr4_2:74806302-74806321 | Msa0622380:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | + | chr4_2:74806312-74806331 | Msa0622380:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | + | chr4_2:74806324-74806343 | Msa0622380:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | + | chr4_2:74806354-74806373 | Msa0622380:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | - | chr4_2:74806372-74806391 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | + | chr4_2:74806371-74806390 | Msa0622380:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | + | chr4_2:74806372-74806391 | Msa0622380:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | - | chr4_2:74806410-74806429 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | + | chr4_2:74806409-74806428 | Msa0622380:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | - | chr4_2:74806573-74806592 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | - | chr4_2:74806721-74806740 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | + | chr4_2:74806726-74806745 | Msa0622380:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | - | chr4_2:74806763-74806782 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | - | chr4_2:74806861-74806880 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | - | chr4_2:74806864-74806883 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | + | chr4_2:74806996-74807015 | Msa0622380:CDS | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | + | chr4_2:74807003-74807022 | Msa0622380:CDS | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | + | chr4_2:74807004-74807023 | Msa0622380:CDS | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | + | chr4_2:74807286-74807305 | Msa0622380:CDS | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | + | chr4_2:74807287-74807306 | Msa0622380:CDS | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | + | chr4_2:74807324-74807343 | Msa0622380:CDS | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | - | chr4_2:74807419-74807438 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | + | chr4_2:74807546-74807565 | Msa0622380:CDS | 40.0% |
| AGATAGAGACGTTAAAGTGG+TGG | + | chr4_2:74805989-74806008 | Msa0622380:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | + | chr4_2:74805990-74806009 | Msa0622380:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | + | chr4_2:74805991-74806010 | Msa0622380:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | - | chr4_2:74806078-74806097 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | + | chr4_2:74806087-74806106 | Msa0622380:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | + | chr4_2:74806093-74806112 | Msa0622380:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | - | chr4_2:74806126-74806145 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | - | chr4_2:74806127-74806146 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | + | chr4_2:74806302-74806321 | Msa0622380:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | + | chr4_2:74806312-74806331 | Msa0622380:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | + | chr4_2:74806324-74806343 | Msa0622380:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | + | chr4_2:74806354-74806373 | Msa0622380:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | - | chr4_2:74806372-74806391 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | + | chr4_2:74806371-74806390 | Msa0622380:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | + | chr4_2:74806372-74806391 | Msa0622380:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | - | chr4_2:74806410-74806429 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | + | chr4_2:74806409-74806428 | Msa0622380:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | - | chr4_2:74806573-74806592 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | - | chr4_2:74806721-74806740 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | + | chr4_2:74806726-74806745 | Msa0622380:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | - | chr4_2:74806763-74806782 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | - | chr4_2:74806861-74806880 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | - | chr4_2:74806864-74806883 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | + | chr4_2:74806996-74807015 | Msa0622380:CDS | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | + | chr4_2:74807003-74807022 | Msa0622380:CDS | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | + | chr4_2:74807004-74807023 | Msa0622380:CDS | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | + | chr4_2:74807286-74807305 | Msa0622380:CDS | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | + | chr4_2:74807287-74807306 | Msa0622380:CDS | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | + | chr4_2:74807324-74807343 | Msa0622380:CDS | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | - | chr4_2:74807419-74807438 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | + | chr4_2:74807546-74807565 | Msa0622380:CDS | 40.0% |
| CACATACAGTATAGAGAGCG+AGG | + | chr4_2:74805944-74805963 | Msa0622380:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | + | chr4_2:74806118-74806137 | Msa0622380:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | - | chr4_2:74806125-74806144 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | + | chr4_2:74806278-74806297 | Msa0622380:intron | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | - | chr4_2:74806857-74806876 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | - | chr4_2:74807182-74807201 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | + | chr4_2:74807321-74807340 | Msa0622380:CDS | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | + | chr4_2:74807524-74807543 | Msa0622380:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | + | chr4_2:74807525-74807544 | Msa0622380:CDS | 45.0% | |
| CACATACAGTATAGAGAGCG+AGG | + | chr4_2:74805944-74805963 | Msa0622380:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | + | chr4_2:74806118-74806137 | Msa0622380:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | - | chr4_2:74806125-74806144 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | + | chr4_2:74806278-74806297 | Msa0622380:intron | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | - | chr4_2:74806857-74806876 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | - | chr4_2:74807182-74807201 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | + | chr4_2:74807321-74807340 | Msa0622380:CDS | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | + | chr4_2:74807524-74807543 | Msa0622380:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | + | chr4_2:74807525-74807544 | Msa0622380:CDS | 45.0% | |
| ! | AAGTGGTGGGGAAGCTTGAA+AGG | + | chr4_2:74806003-74806022 | Msa0622380:CDS | 50.0% |
| CATGGAGAGGGAGAGAATCT+TGG | + | chr4_2:74807299-74807318 | Msa0622380:CDS | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | + | chr4_2:74807310-74807329 | Msa0622380:CDS | 50.0% |
| ! | AAGTGGTGGGGAAGCTTGAA+AGG | + | chr4_2:74806003-74806022 | Msa0622380:CDS | 50.0% |
| CATGGAGAGGGAGAGAATCT+TGG | + | chr4_2:74807299-74807318 | Msa0622380:CDS | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | + | chr4_2:74807310-74807329 | Msa0622380:CDS | 50.0% |
| CAACCATCTCAGCTACCTGC+AGG | - | chr4_2:74806296-74806315 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | + | chr4_2:74806681-74806700 | Msa0622380:intron | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | + | chr4_2:74807302-74807321 | Msa0622380:CDS | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | + | chr4_2:74807303-74807322 | Msa0622380:CDS | 55.0% | |
| CAACCATCTCAGCTACCTGC+AGG | - | chr4_2:74806296-74806315 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | + | chr4_2:74806681-74806700 | Msa0622380:intron | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | + | chr4_2:74807302-74807321 | Msa0622380:CDS | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | + | chr4_2:74807303-74807322 | Msa0622380:CDS | 55.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | + | chr4_2:74806290-74806309 | Msa0622380:intron | 60.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | + | chr4_2:74806290-74806309 | Msa0622380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74805936 | 74807577 | 74805936 | ID=Msa0622380;Name=Msa0622380 |
| chr4_2 | mRNA | 74805936 | 74807577 | 74805936 | ID=Msa0622380-mRNA-1;Parent=Msa0622380;Name=Msa0622380-mRNA-1;_AED=0.01;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|407 |
| chr4_2 | exon | 74805936 | 74806139 | 74805936 | ID=Msa0622380-mRNA-1:exon:22653;Parent=Msa0622380-mRNA-1 |
| chr4_2 | exon | 74806300 | 74806430 | 74806300 | ID=Msa0622380-mRNA-1:exon:22654;Parent=Msa0622380-mRNA-1 |
| chr4_2 | exon | 74806689 | 74807577 | 74806689 | ID=Msa0622380-mRNA-1:exon:22655;Parent=Msa0622380-mRNA-1 |
| chr4_2 | CDS | 74805936 | 74806139 | 74805936 | ID=Msa0622380-mRNA-1:cds;Parent=Msa0622380-mRNA-1 |
| chr4_2 | CDS | 74806300 | 74806430 | 74806300 | ID=Msa0622380-mRNA-1:cds;Parent=Msa0622380-mRNA-1 |
| chr4_2 | CDS | 74806689 | 74807577 | 74806689 | ID=Msa0622380-mRNA-1:cds;Parent=Msa0622380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
