Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419050 | sp|Q42381|HLS1_ARATH | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 7.12e-68 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419050 | A0A396IJ64 | 97.052 | 407 | 12 | 0 | 1 | 407 | 1 | 407 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1419050 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622380 | Msa1419050 | 0.813971 | 1.953145e-51 | -8.615850e-47 |
| Msa0622410 | Msa1419050 | 0.924513 | 6.372933e-90 | -8.615850e-47 |
| Msa1218710 | Msa1419050 | 0.856716 | 2.664896e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419050 | MtrunA17_Chr4g0068331 | 97.052 | 407 | 12 | 0 | 1 | 407 | 1 | 407 | 0.0 | 820 |
| Msa1419050 | MtrunA17_Chr3g0105631 | 37.037 | 405 | 219 | 15 | 13 | 406 | 8 | 387 | 1.87e-72 | 232 |
| Msa1419050 | MtrunA17_Chr4g0001411 | 34.390 | 410 | 239 | 11 | 8 | 407 | 20 | 409 | 2.10e-63 | 209 |
| Msa1419050 | MtrunA17_Chr4g0053961 | 33.571 | 420 | 241 | 12 | 11 | 407 | 7 | 411 | 2.01e-62 | 206 |
| Msa1419050 | MtrunA17_Chr5g0401351 | 33.976 | 415 | 242 | 12 | 7 | 406 | 5 | 402 | 2.62e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419050 | AT4G37580.1 | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 7.24e-69 | 223 |
| Msa1419050 | AT2G23060.1 | 33.570 | 423 | 241 | 13 | 11 | 407 | 5 | 413 | 1.31e-65 | 215 |
| Msa1419050 | AT2G30090.1 | 34.390 | 410 | 214 | 19 | 13 | 406 | 15 | 385 | 3.74e-54 | 184 |
| Msa1419050 | AT4G37580.2 | 33.994 | 353 | 204 | 10 | 74 | 407 | 4 | 346 | 5.82e-54 | 182 |
| Msa1419050 | AT5G67430.1 | 33.496 | 409 | 228 | 14 | 11 | 406 | 8 | 385 | 5.74e-53 | 181 |
| Msa1419050 | AT5G67430.2 | 32.492 | 317 | 194 | 9 | 91 | 406 | 23 | 320 | 4.92e-39 | 142 |
| Msa1419050 | AT2G23060.2 | 30.208 | 288 | 188 | 7 | 124 | 407 | 1 | 279 | 1.03e-35 | 132 |
Find 84 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTGTGCAAACTCCTTC+TGG | 0.261524 | tig0024668:-16357 | Msa1419050:CDS |
| GAGCTTGTTGGAGTTGTTAA+AGG | 0.270934 | tig0024668:-16387 | Msa1419050:CDS |
| GATTAATGGGACTACTAAAA+AGG | 0.272190 | tig0024668:-16674 | Msa1419050:CDS |
| AGGGTTGTTATAACTGAGTT+AGG | 0.299823 | tig0024668:-15328 | Msa1419050:CDS |
| GTGACCCTTTATCTAGGATT+AGG | 0.304028 | tig0024668:-16618 | Msa1419050:CDS |
| AGTTGCATTTGTTGGTGAAT+AGG | 0.308058 | tig0024668:+15911 | None:intergenic |
| TTTCAAGATTCTTGTGTAGA+AGG | 0.309351 | tig0024668:+15774 | None:intergenic |
| AGAAACTGTACTGAGATTAA+TGG | 0.318075 | tig0024668:-16688 | Msa1419050:CDS |
| TAGAACCTAATCCTAGATAA+AGG | 0.318214 | tig0024668:+16613 | None:intergenic |
| ATCTAATGGATACAACTCTT+TGG | 0.333407 | tig0024668:+15750 | None:intergenic |
| GTTGGTGAATAGGTTATTAG+AGG | 0.345184 | tig0024668:+15921 | None:intergenic |
| TTCTTAGAAATGTGGTTTGT+TGG | 0.348075 | tig0024668:+15838 | None:intergenic |
| ATGTGTAACAACAGTACATT+TGG | 0.356097 | tig0024668:-15457 | Msa1419050:CDS |
| GAAACTGTACTGAGATTAAT+GGG | 0.378728 | tig0024668:-16687 | Msa1419050:CDS |
| AGAATAATGTCCATATCTAA+TGG | 0.380464 | tig0024668:+15736 | None:intergenic |
| GCGGGCTAATGGAATCAATA+TGG | 0.381668 | tig0024668:-15390 | Msa1419050:CDS |
| AGAGAATCTTGGCGGGCTAA+TGG | 0.382594 | tig0024668:-15401 | Msa1419050:CDS |
| TCTTAGAAATGTGGTTTGTT+GGG | 0.383397 | tig0024668:+15839 | None:intergenic |
| GTTATAACTGAGTTAGGGTT+TGG | 0.401121 | tig0024668:-15322 | Msa1419050:CDS |
| TTCAAGATGGGTTGTATACT+AGG | 0.416953 | tig0024668:-16327 | Msa1419050:CDS |
| TGATGATGAAAATGATGAAT+TGG | 0.425086 | tig0024668:-15212 | Msa1419050:CDS |
| TGGAGGTTTACATCAAGATT+AGG | 0.428439 | tig0024668:-15370 | Msa1419050:CDS |
| CATGATAATTACCTGTGTAT+AGG | 0.429059 | tig0024668:+16291 | None:intergenic |
| TTCTGGATCACTCTTCAAGA+TGG | 0.429973 | tig0024668:-16340 | Msa1419050:CDS |
| ATTGAAATAGTTGCATTTGT+TGG | 0.433692 | tig0024668:+15903 | None:intergenic |
| GTTGAAAACAAGGAGCTTGT+TGG | 0.434978 | tig0024668:-16399 | Msa1419050:CDS |
| AGAGTTGTATCCATTAGATA+TGG | 0.437070 | tig0024668:-15746 | Msa1419050:CDS |
| AAATTTACTGTGCAGGAGAA+AGG | 0.442722 | tig0024668:-16037 | Msa1419050:intron |
| GTAATGGTGACCCTTTATCT+AGG | 0.452354 | tig0024668:-16624 | Msa1419050:CDS |
| GGAATGTGTTTGTTGATCCT+AGG | 0.455878 | tig0024668:-15165 | Msa1419050:CDS |
| CAAAATTATTTCAACCACTT+AGG | 0.457975 | tig0024668:-15546 | Msa1419050:CDS |
| GGGTTGTTATAACTGAGTTA+GGG | 0.463044 | tig0024668:-15327 | Msa1419050:CDS |
| CTATCCCCTTCGTGTTATGT+TGG | 0.463391 | tig0024668:-16593 | Msa1419050:intron |
| TAGCATCCACTCTTCAATTG+AGG | 0.471060 | tig0024668:+15993 | None:intergenic |
| CATGGAGAGGGAGAGAATCT+TGG | 0.478715 | tig0024668:-15412 | Msa1419050:CDS |
| TGTGTATAGGAGAGACTCTA+AGG | 0.479289 | tig0024668:+16304 | None:intergenic |
| AATAACTAACCCAAGTTCCT+AGG | 0.480250 | tig0024668:+15698 | None:intergenic |
| TCTGGATCACTCTTCAAGAT+GGG | 0.484366 | tig0024668:-16339 | Msa1419050:CDS |
| GATAGAGACGTTAAAGTGGT+GGG | 0.487062 | tig0024668:-16721 | Msa1419050:CDS |
| GAATGTGTTTGTTGATCCTA+GGG | 0.487462 | tig0024668:-15164 | Msa1419050:CDS |
| AGAACCTAATCCTAGATAAA+GGG | 0.491131 | tig0024668:+16614 | None:intergenic |
| CACGACATAGAATCAATTTG+AGG | 0.498622 | tig0024668:+15277 | None:intergenic |
| AATTTACTGTGCAGGAGAAA+GGG | 0.506218 | tig0024668:-16036 | Msa1419050:intron |
| TGTGTAACAACAGTACATTT+GGG | 0.506653 | tig0024668:-15456 | Msa1419050:CDS |
| AACAAACCACATTTCTAAGA+AGG | 0.512894 | tig0024668:-15836 | Msa1419050:CDS |
| TTGGGAAACTAGTTGGTGGA+TGG | 0.520506 | tig0024668:+15857 | None:intergenic |
| TTCACCAACATGATGAGTAA+TGG | 0.521767 | tig0024668:-16640 | Msa1419050:CDS |
| CTTTATGGACTTCATGGAGA+GGG | 0.530822 | tig0024668:-15424 | Msa1419050:CDS |
| TGGTTTGTTGGGAAACTAGT+TGG | 0.533846 | tig0024668:+15850 | None:intergenic |
| AGCTGAGATGGTTGAAAACA+AGG | 0.541254 | tig0024668:-16409 | Msa1419050:CDS |
| AAAGTACAACAAGCTCATCA+TGG | 0.542735 | tig0024668:-15627 | Msa1419050:CDS |
| AAAACTCAGCCTAGGAACTT+GGG | 0.550630 | tig0024668:-15707 | Msa1419050:CDS |
| TTTGTTGGGAAACTAGTTGG+TGG | 0.550774 | tig0024668:+15853 | None:intergenic |
| TGACATCCTTCTTAGAAATG+TGG | 0.553319 | tig0024668:+15830 | None:intergenic |
| TGATGAAAATGATGAATTGG+TGG | 0.563601 | tig0024668:-15209 | Msa1419050:CDS |
| TGAGGAACATGGTTTACAAG+TGG | 0.564375 | tig0024668:+15295 | None:intergenic |
| ATAGAGACGTTAAAGTGGTG+GGG | 0.567023 | tig0024668:-16720 | Msa1419050:CDS |
| GGAGAGGGAGAGAATCTTGG+CGG | 0.572469 | tig0024668:-15409 | Msa1419050:CDS |
| GAAGAGTGGATGCTAAGAAA+TGG | 0.583171 | tig0024668:-15985 | Msa1419050:CDS |
| TGAAGATAGAGACGTTAAAG+TGG | 0.583839 | tig0024668:-16725 | Msa1419050:CDS |
| TAGAATCAATTTGAGGAACA+TGG | 0.588050 | tig0024668:+15284 | None:intergenic |
| AGATAGAGACGTTAAAGTGG+TGG | 0.592949 | tig0024668:-16722 | Msa1419050:CDS |
| CTGTGCAGGAGAAAGGGAGT+TGG | 0.597746 | tig0024668:-16030 | Msa1419050:intron |
| GTCGCATGAAGAAACCTAAG+TGG | 0.602408 | tig0024668:+15532 | None:intergenic |
| TGCGACATTAAATCATGCAA+AGG | 0.605817 | tig0024668:-15515 | Msa1419050:CDS |
| TGGCCTGCAGGTAGCTGAGA+TGG | 0.614618 | tig0024668:-16421 | Msa1419050:intron |
| GAGAGGGAGAGAATCTTGGC+GGG | 0.615284 | tig0024668:-15408 | Msa1419050:CDS |
| GAGGTGATGAAGAGACAACT+CGG | 0.616820 | tig0024668:-15187 | Msa1419050:CDS |
| ACACACCAACATAACACGAA+GGG | 0.618929 | tig0024668:+16588 | None:intergenic |
| GTCACCATTACTCATCATGT+TGG | 0.630070 | tig0024668:+16636 | None:intergenic |
| TTGTAACCTCAATTGAAGAG+TGG | 0.632770 | tig0024668:-15999 | Msa1419050:CDS |
| CACATACAGTATAGAGAGCG+AGG | 0.638269 | tig0024668:-16767 | Msa1419050:CDS |
| TGTCGTGTATTGATGATATG+TGG | 0.645905 | tig0024668:-15261 | Msa1419050:CDS |
| AGGTGATGAAGAGACAACTC+GGG | 0.647405 | tig0024668:-15186 | Msa1419050:CDS |
| TCTTTATGGACTTCATGGAG+AGG | 0.647924 | tig0024668:-15425 | Msa1419050:CDS |
| TGAAAATGATGAATTGGTGG+AGG | 0.648658 | tig0024668:-15206 | Msa1419050:CDS |
| TTAGAGTCTCTCCTATACAC+AGG | 0.650718 | tig0024668:-16302 | Msa1419050:intron |
| GAGACGTTAAAGTGGTGGGG+AGG | 0.666370 | tig0024668:-16717 | Msa1419050:CDS |
| CACACCAACATAACACGAAG+GGG | 0.668902 | tig0024668:+16589 | None:intergenic |
| TACACACCAACATAACACGA+AGG | 0.672948 | tig0024668:+16587 | None:intergenic |
| GGCTAATGGAATCAATATGG+AGG | 0.674786 | tig0024668:-15387 | Msa1419050:CDS |
| ATGGAGATATATGATGAGTG+AGG | 0.681980 | tig0024668:+15876 | None:intergenic |
| GAGTCAAACATTCTCAAACA+AGG | 0.685595 | tig0024668:+15481 | None:intergenic |
| ATCTTGAAGAGTGATCCAGA+AGG | 0.751962 | tig0024668:+16342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTAACTTGA+AGG | + | tig0024668:16374-16393 | None:intergenic | 15.0% |
| !!! | ATAATTTTGTTTTAACTTGA+AGG | + | tig0024668:16374-16393 | None:intergenic | 15.0% |
| !! | ATATAATATATATACACCTG+CGG | + | tig0024668:15458-15477 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | - | tig0024668:15490-15509 | Msa1419050:CDS | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | + | tig0024668:15885-15904 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | - | tig0024668:16575-16594 | Msa1419050:intron | 20.0% |
| !! | ATATAATATATATACACCTG+CGG | + | tig0024668:15458-15477 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | - | tig0024668:15490-15509 | Msa1419050:CDS | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | + | tig0024668:15885-15904 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | - | tig0024668:16575-16594 | Msa1419050:intron | 20.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | - | tig0024668:15258-15277 | Msa1419050:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | + | tig0024668:15402-15421 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | - | tig0024668:15887-15906 | Msa1419050:CDS | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | + | tig0024668:16031-16050 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | + | tig0024668:16198-16217 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | - | tig0024668:16385-16404 | Msa1419050:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | - | tig0024668:16492-16511 | Msa1419050:intron | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | - | tig0024668:16584-16603 | Msa1419050:intron | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | - | tig0024668:16719-16738 | Msa1419050:CDS | 25.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | - | tig0024668:15258-15277 | Msa1419050:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | + | tig0024668:15402-15421 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | - | tig0024668:15887-15906 | Msa1419050:CDS | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | + | tig0024668:16031-16050 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | + | tig0024668:16198-16217 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | - | tig0024668:16385-16404 | Msa1419050:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | - | tig0024668:16492-16511 | Msa1419050:intron | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | - | tig0024668:16584-16603 | Msa1419050:intron | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | - | tig0024668:16719-16738 | Msa1419050:CDS | 25.0% |
| AGAAACTGTACTGAGATTAA+TGG | - | tig0024668:15243-15262 | Msa1419050:CDS | 30.0% | |
| GAAACTGTACTGAGATTAAT+GGG | - | tig0024668:15244-15263 | Msa1419050:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | - | tig0024668:15257-15276 | Msa1419050:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | + | tig0024668:15320-15339 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | + | tig0024668:15321-15340 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | - | tig0024668:15416-15435 | Msa1419050:CDS | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | + | tig0024668:15643-15662 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | - | tig0024668:15641-15660 | Msa1419050:CDS | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | + | tig0024668:15702-15721 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | - | tig0024668:15784-15803 | Msa1419050:CDS | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | + | tig0024668:16095-16114 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | + | tig0024668:16096-16115 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | - | tig0024668:16095-16114 | Msa1419050:intron | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | + | tig0024668:16160-16179 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | + | tig0024668:16184-16203 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | - | tig0024668:16185-16204 | Msa1419050:intron | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | + | tig0024668:16301-16320 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | + | tig0024668:16302-16321 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | - | tig0024668:16322-16341 | Msa1419050:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | - | tig0024668:16474-16493 | Msa1419050:intron | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | - | tig0024668:16475-16494 | Msa1419050:intron | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | - | tig0024668:16501-16520 | Msa1419050:intron | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | - | tig0024668:16583-16602 | Msa1419050:intron | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | + | tig0024668:16650-16669 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | - | tig0024668:16722-16741 | Msa1419050:CDS | 30.0% | |
| AGAAACTGTACTGAGATTAA+TGG | - | tig0024668:15243-15262 | Msa1419050:CDS | 30.0% | |
| GAAACTGTACTGAGATTAAT+GGG | - | tig0024668:15244-15263 | Msa1419050:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | - | tig0024668:15257-15276 | Msa1419050:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | + | tig0024668:15320-15339 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | + | tig0024668:15321-15340 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | - | tig0024668:15416-15435 | Msa1419050:CDS | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | + | tig0024668:15643-15662 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | - | tig0024668:15641-15660 | Msa1419050:CDS | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | + | tig0024668:15702-15721 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | - | tig0024668:15784-15803 | Msa1419050:CDS | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | + | tig0024668:16095-16114 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | + | tig0024668:16096-16115 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | - | tig0024668:16095-16114 | Msa1419050:intron | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | + | tig0024668:16160-16179 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | + | tig0024668:16184-16203 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | - | tig0024668:16185-16204 | Msa1419050:intron | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | + | tig0024668:16301-16320 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | + | tig0024668:16302-16321 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | - | tig0024668:16322-16341 | Msa1419050:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | - | tig0024668:16474-16493 | Msa1419050:intron | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | - | tig0024668:16475-16494 | Msa1419050:intron | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | - | tig0024668:16501-16520 | Msa1419050:intron | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | - | tig0024668:16583-16602 | Msa1419050:intron | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | + | tig0024668:16650-16669 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | - | tig0024668:16722-16741 | Msa1419050:CDS | 30.0% | |
| TGAAGATAGAGACGTTAAAG+TGG | - | tig0024668:15206-15225 | Msa1419050:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | - | tig0024668:15291-15310 | Msa1419050:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | - | tig0024668:15439-15458 | Msa1419050:CDS | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | - | tig0024668:15604-15623 | Msa1419050:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | + | tig0024668:15792-15811 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | + | tig0024668:15830-15849 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | - | tig0024668:15894-15913 | Msa1419050:CDS | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | - | tig0024668:15895-15914 | Msa1419050:CDS | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | - | tig0024668:15932-15951 | Msa1419050:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | + | tig0024668:15987-16006 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | + | tig0024668:15992-16011 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | + | tig0024668:16013-16032 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | + | tig0024668:16023-16042 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | + | tig0024668:16058-16077 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | + | tig0024668:16104-16123 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | + | tig0024668:16236-16255 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | - | tig0024668:16304-16323 | Msa1419050:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | - | tig0024668:16416-16435 | Msa1419050:intron | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | + | tig0024668:16453-16472 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | - | tig0024668:16561-16580 | Msa1419050:intron | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | - | tig0024668:16603-16622 | Msa1419050:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | - | tig0024668:16604-16623 | Msa1419050:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | - | tig0024668:16609-16628 | Msa1419050:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | + | tig0024668:16657-16676 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | - | tig0024668:16670-16689 | Msa1419050:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | - | tig0024668:16687-16706 | Msa1419050:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | - | tig0024668:16725-16744 | Msa1419050:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | - | tig0024668:16767-16786 | Msa1419050:CDS | 35.0% |
| TGAAGATAGAGACGTTAAAG+TGG | - | tig0024668:15206-15225 | Msa1419050:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | - | tig0024668:15291-15310 | Msa1419050:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | - | tig0024668:15439-15458 | Msa1419050:CDS | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | - | tig0024668:15604-15623 | Msa1419050:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | + | tig0024668:15792-15811 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | + | tig0024668:15830-15849 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | - | tig0024668:15894-15913 | Msa1419050:CDS | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | - | tig0024668:15895-15914 | Msa1419050:CDS | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | - | tig0024668:15932-15951 | Msa1419050:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | + | tig0024668:15987-16006 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | + | tig0024668:15992-16011 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | + | tig0024668:16013-16032 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | + | tig0024668:16023-16042 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | + | tig0024668:16058-16077 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | + | tig0024668:16104-16123 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | + | tig0024668:16236-16255 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | - | tig0024668:16304-16323 | Msa1419050:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | - | tig0024668:16416-16435 | Msa1419050:intron | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | + | tig0024668:16453-16472 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | - | tig0024668:16561-16580 | Msa1419050:intron | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | - | tig0024668:16603-16622 | Msa1419050:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | - | tig0024668:16604-16623 | Msa1419050:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | - | tig0024668:16609-16628 | Msa1419050:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | + | tig0024668:16657-16676 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | - | tig0024668:16670-16689 | Msa1419050:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | - | tig0024668:16687-16706 | Msa1419050:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | - | tig0024668:16725-16744 | Msa1419050:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | - | tig0024668:16767-16786 | Msa1419050:CDS | 35.0% |
| AGATAGAGACGTTAAAGTGG+TGG | - | tig0024668:15209-15228 | Msa1419050:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | - | tig0024668:15210-15229 | Msa1419050:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | - | tig0024668:15211-15230 | Msa1419050:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | + | tig0024668:15298-15317 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | - | tig0024668:15307-15326 | Msa1419050:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | - | tig0024668:15313-15332 | Msa1419050:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | + | tig0024668:15346-15365 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | + | tig0024668:15347-15366 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | - | tig0024668:15522-15541 | Msa1419050:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | - | tig0024668:15532-15551 | Msa1419050:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | - | tig0024668:15544-15563 | Msa1419050:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | - | tig0024668:15574-15593 | Msa1419050:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | + | tig0024668:15592-15611 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | - | tig0024668:15591-15610 | Msa1419050:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | - | tig0024668:15592-15611 | Msa1419050:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | + | tig0024668:15630-15649 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | - | tig0024668:15629-15648 | Msa1419050:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | + | tig0024668:15793-15812 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | + | tig0024668:15941-15960 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | - | tig0024668:15946-15965 | Msa1419050:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | + | tig0024668:15983-16002 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | + | tig0024668:16081-16100 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | + | tig0024668:16084-16103 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | - | tig0024668:16216-16235 | Msa1419050:intron | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | - | tig0024668:16223-16242 | Msa1419050:intron | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | - | tig0024668:16224-16243 | Msa1419050:intron | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | - | tig0024668:16506-16525 | Msa1419050:intron | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | - | tig0024668:16507-16526 | Msa1419050:intron | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | - | tig0024668:16544-16563 | Msa1419050:intron | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | + | tig0024668:16639-16658 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | - | tig0024668:16766-16785 | Msa1419050:CDS | 40.0% |
| AGATAGAGACGTTAAAGTGG+TGG | - | tig0024668:15209-15228 | Msa1419050:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | - | tig0024668:15210-15229 | Msa1419050:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | - | tig0024668:15211-15230 | Msa1419050:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | + | tig0024668:15298-15317 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | - | tig0024668:15307-15326 | Msa1419050:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | - | tig0024668:15313-15332 | Msa1419050:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | + | tig0024668:15346-15365 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | + | tig0024668:15347-15366 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | - | tig0024668:15522-15541 | Msa1419050:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | - | tig0024668:15532-15551 | Msa1419050:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | - | tig0024668:15544-15563 | Msa1419050:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | - | tig0024668:15574-15593 | Msa1419050:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | + | tig0024668:15592-15611 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | - | tig0024668:15591-15610 | Msa1419050:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | - | tig0024668:15592-15611 | Msa1419050:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | + | tig0024668:15630-15649 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | - | tig0024668:15629-15648 | Msa1419050:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | + | tig0024668:15793-15812 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | + | tig0024668:15941-15960 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | - | tig0024668:15946-15965 | Msa1419050:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | + | tig0024668:15983-16002 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | + | tig0024668:16081-16100 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | + | tig0024668:16084-16103 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | - | tig0024668:16216-16235 | Msa1419050:intron | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | - | tig0024668:16223-16242 | Msa1419050:intron | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | - | tig0024668:16224-16243 | Msa1419050:intron | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | - | tig0024668:16506-16525 | Msa1419050:intron | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | - | tig0024668:16507-16526 | Msa1419050:intron | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | - | tig0024668:16544-16563 | Msa1419050:intron | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | + | tig0024668:16639-16658 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | - | tig0024668:16766-16785 | Msa1419050:CDS | 40.0% |
| CACATACAGTATAGAGAGCG+AGG | - | tig0024668:15164-15183 | Msa1419050:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | - | tig0024668:15338-15357 | Msa1419050:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | + | tig0024668:15345-15364 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | - | tig0024668:15498-15517 | Msa1419050:CDS | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | + | tig0024668:16077-16096 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | + | tig0024668:16402-16421 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | - | tig0024668:16541-16560 | Msa1419050:intron | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | - | tig0024668:16744-16763 | Msa1419050:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | - | tig0024668:16745-16764 | Msa1419050:CDS | 45.0% | |
| CACATACAGTATAGAGAGCG+AGG | - | tig0024668:15164-15183 | Msa1419050:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | - | tig0024668:15338-15357 | Msa1419050:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | + | tig0024668:15345-15364 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | - | tig0024668:15498-15517 | Msa1419050:CDS | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | + | tig0024668:16077-16096 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | + | tig0024668:16402-16421 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | - | tig0024668:16541-16560 | Msa1419050:intron | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | - | tig0024668:16744-16763 | Msa1419050:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | - | tig0024668:16745-16764 | Msa1419050:CDS | 45.0% | |
| CATGGAGAGGGAGAGAATCT+TGG | - | tig0024668:16519-16538 | Msa1419050:intron | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | - | tig0024668:16530-16549 | Msa1419050:intron | 50.0% |
| CATGGAGAGGGAGAGAATCT+TGG | - | tig0024668:16519-16538 | Msa1419050:intron | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | - | tig0024668:16530-16549 | Msa1419050:intron | 50.0% |
| ! | GAGACGTTAAAGTGGTGGGG+AGG | - | tig0024668:15214-15233 | Msa1419050:CDS | 55.0% |
| CAACCATCTCAGCTACCTGC+AGG | + | tig0024668:15516-15535 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | - | tig0024668:15901-15920 | Msa1419050:CDS | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | - | tig0024668:16522-16541 | Msa1419050:intron | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | - | tig0024668:16523-16542 | Msa1419050:intron | 55.0% | |
| ! | GAGACGTTAAAGTGGTGGGG+AGG | - | tig0024668:15214-15233 | Msa1419050:CDS | 55.0% |
| CAACCATCTCAGCTACCTGC+AGG | + | tig0024668:15516-15535 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | - | tig0024668:15901-15920 | Msa1419050:CDS | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | - | tig0024668:16522-16541 | Msa1419050:intron | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | - | tig0024668:16523-16542 | Msa1419050:intron | 55.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | - | tig0024668:15510-15529 | Msa1419050:CDS | 60.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | - | tig0024668:15510-15529 | Msa1419050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024668 | gene | 15156 | 16797 | 15156 | ID=Msa1419050;Name=Msa1419050 |
| tig0024668 | mRNA | 15156 | 16797 | 15156 | ID=Msa1419050-mRNA-1;Parent=Msa1419050;Name=Msa1419050-mRNA-1;_AED=0.01;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|407 |
| tig0024668 | exon | 16594 | 16797 | 16594 | ID=Msa1419050-mRNA-1:exon:761;Parent=Msa1419050-mRNA-1 |
| tig0024668 | exon | 16303 | 16433 | 16303 | ID=Msa1419050-mRNA-1:exon:760;Parent=Msa1419050-mRNA-1 |
| tig0024668 | exon | 15156 | 16044 | 15156 | ID=Msa1419050-mRNA-1:exon:759;Parent=Msa1419050-mRNA-1 |
| tig0024668 | CDS | 16594 | 16797 | 16594 | ID=Msa1419050-mRNA-1:cds;Parent=Msa1419050-mRNA-1 |
| tig0024668 | CDS | 16303 | 16433 | 16303 | ID=Msa1419050-mRNA-1:cds;Parent=Msa1419050-mRNA-1 |
| tig0024668 | CDS | 15156 | 16044 | 15156 | ID=Msa1419050-mRNA-1:cds;Parent=Msa1419050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
