Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622670 | XP_003602810.1 | 97.892 | 427 | 9 | 0 | 1 | 427 | 1 | 427 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622670 | sp|O23034|UBA5_ARATH | 76.037 | 434 | 94 | 6 | 1 | 427 | 1 | 431 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610690 | Msa0622670 | 0.807219 | 5.625649e-50 | -8.615850e-47 |
| Msa0622670 | Msa1013180 | 0.921570 | 3.020283e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622670 | MtrunA17_Chr3g0132251 | 97.892 | 427 | 9 | 0 | 1 | 427 | 1 | 427 | 0.0 | 867 |
| Msa0622670 | MtrunA17_Chr2g0302261 | 96.721 | 427 | 14 | 0 | 1 | 427 | 1 | 427 | 0.0 | 857 |
| Msa0622670 | MtrunA17_Chr8g0352371 | 27.219 | 169 | 98 | 4 | 83 | 246 | 6 | 154 | 8.09e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622670 | AT1G05350.1 | 76.037 | 434 | 94 | 6 | 1 | 427 | 1 | 431 | 0.0 | 660 |
| Msa0622670 | AT2G21470.1 | 26.705 | 176 | 104 | 4 | 74 | 244 | 1 | 156 | 1.09e-12 | 70.5 |
| Msa0622670 | AT2G21470.3 | 26.705 | 176 | 104 | 4 | 74 | 244 | 1 | 156 | 1.21e-12 | 70.1 |
| Msa0622670 | AT2G21470.2 | 26.705 | 176 | 104 | 4 | 74 | 244 | 1 | 156 | 1.66e-12 | 69.7 |
Find 115 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATGTTAAAATTATT+TGG | 0.150637 | 4_2:-75281468 | Msa0622670:three_prime_UTR |
| TCCTCTTAGGTTGTAGCATC+TGG | 0.212081 | 4_2:-75283218 | Msa0622670:intron |
| GTTTCCGAGGATGCCGTTTC+TGG | 0.246371 | 4_2:-75283545 | Msa0622670:CDS |
| ATAATACATAAGTTATAAAT+AGG | 0.253910 | 4_2:+75286791 | None:intergenic |
| CTAAAGTTCTTGTTAGGTTT+TGG | 0.268842 | 4_2:-75282909 | Msa0622670:CDS |
| AGCATATTGCTGATCTTGTT+AGG | 0.273555 | 4_2:-75286247 | Msa0622670:CDS |
| TTGTCATTGCTTGGAGCTTC+AGG | 0.275376 | 4_2:+75281646 | None:intergenic |
| ACAAGAACTTTAGTGTGTTT+TGG | 0.276561 | 4_2:+75282919 | None:intergenic |
| TGGTCAAGTCTCTCCTTATT+TGG | 0.295386 | 4_2:-75282889 | Msa0622670:intron |
| CACATTCAGTTACTTATTCC+TGG | 0.301028 | 4_2:-75283521 | Msa0622670:CDS |
| AGTTCATGGGTGAGACCTTC+AGG | 0.316177 | 4_2:+75281703 | None:intergenic |
| TACAGTTTCAATTAAGCATT+TGG | 0.316473 | 4_2:-75286585 | Msa0622670:five_prime_UTR |
| ACGCCGCTACCTTGTTTATT+AGG | 0.317487 | 4_2:+75284229 | None:intergenic |
| TTTCATTGTAGTCGTCAATA+TGG | 0.322341 | 4_2:+75281445 | None:intergenic |
| TGCTGCCGCAAAAGCAAAAT+TGG | 0.323217 | 4_2:-75282465 | Msa0622670:CDS |
| AGTGCAATACTTACCAAATA+AGG | 0.330730 | 4_2:+75282876 | None:intergenic |
| ATGCAATCTTCACCCATAAA+AGG | 0.330956 | 4_2:-75281421 | Msa0622670:three_prime_UTR |
| GCATTTGAACATTGAGGGTT+TGG | 0.346399 | 4_2:+75282633 | None:intergenic |
| AACAATGAACAATATGCTTA+TGG | 0.350274 | 4_2:+75286868 | None:intergenic |
| AACACACTAAAGTTCTTGTT+AGG | 0.352881 | 4_2:-75282915 | Msa0622670:CDS |
| GAGTTATAAATCGTAGAAAA+AGG | 0.355162 | 4_2:+75286827 | None:intergenic |
| ATCAAATGCATGAGATATAT+CGG | 0.361885 | 4_2:-75286713 | Msa0622670:five_prime_UTR |
| TTTGGCTTCATTTGCATAGT+TGG | 0.362219 | 4_2:+75282651 | None:intergenic |
| AGTTACAGTGTCGGAGAAAT+TGG | 0.367811 | 4_2:-75286632 | Msa0622670:five_prime_UTR |
| TCGAGAATTACGAACGGATA+AGG | 0.369218 | 4_2:-75286035 | Msa0622670:CDS |
| ATGATAACGAATGGAATATA+AGG | 0.370693 | 4_2:-75282403 | Msa0622670:intron |
| AGGAGGAGCGCATGCAAAAC+AGG | 0.372601 | 4_2:+75283490 | None:intergenic |
| GAAGTAAATACCTGAACTTT+TGG | 0.377728 | 4_2:+75282165 | None:intergenic |
| TGTATTATAACTTTGTTGCT+TGG | 0.379060 | 4_2:-75286776 | Msa0622670:five_prime_UTR |
| CGAGAATTACGAACGGATAA+GGG | 0.381220 | 4_2:-75286034 | Msa0622670:CDS |
| TCTTCCCTCGCGTTAGTAAA+CGG | 0.390388 | 4_2:+75286671 | None:intergenic |
| TGGAACTTGCAAACATGAAT+AGG | 0.394992 | 4_2:-75284939 | Msa0622670:CDS |
| TTTGCGGCAGCATCCCTTGT+TGG | 0.395869 | 4_2:+75282476 | None:intergenic |
| TTAAAATTTACCATGGTAGT+TGG | 0.396645 | 4_2:+75283146 | None:intergenic |
| CAATCCGTACAGTCGGCTTA+TGG | 0.406051 | 4_2:-75286079 | Msa0622670:CDS |
| ATTTGAGTGCTCACTTGATC+AGG | 0.406505 | 4_2:+75284904 | None:intergenic |
| TTGGCTTCATTTGCATAGTT+GGG | 0.409034 | 4_2:+75282652 | None:intergenic |
| GCATATTGCTGATCTTGTTA+GGG | 0.423394 | 4_2:-75286246 | Msa0622670:CDS |
| CCTCTTAGGTTGTAGCATCT+GGG | 0.433455 | 4_2:-75283217 | Msa0622670:intron |
| GGTACCAATACCAAAAGTTC+AGG | 0.439184 | 4_2:-75282175 | Msa0622670:intron |
| CATCCGCAGTAGGAAGTTCA+TGG | 0.443784 | 4_2:+75281689 | None:intergenic |
| TAATGCAGAGAGGTGGTTGT+TGG | 0.445334 | 4_2:-75286749 | Msa0622670:five_prime_UTR |
| CACCTGACTCCATCCATGTA+TGG | 0.448970 | 4_2:+75284011 | None:intergenic |
| CTTATGTAATCACAGGGAAT+AGG | 0.450628 | 4_2:-75285039 | Msa0622670:intron |
| GCAAAACAGGCCGTTTCTCC+AGG | 0.458848 | 4_2:+75283503 | None:intergenic |
| TGTTCGCCGCACAAAAGTTA+AGG | 0.460224 | 4_2:-75286216 | Msa0622670:intron |
| GCTTATGGCGCTTCAGAGAA+TGG | 0.464902 | 4_2:-75286064 | Msa0622670:CDS |
| AAGCTGCATTTGAACATTGA+GGG | 0.470847 | 4_2:+75282628 | None:intergenic |
| GAGATTAGTACATACAACTA+TGG | 0.478287 | 4_2:+75285999 | None:intergenic |
| GCATCGCGAAGAGATGGATC+TGG | 0.478903 | 4_2:+75286480 | None:intergenic |
| GTTACTTATTCCTGGAGAAA+CGG | 0.484271 | 4_2:-75283513 | Msa0622670:CDS |
| AGTGGACCTTCTTCAACTAA+TGG | 0.493261 | 4_2:+75282431 | None:intergenic |
| AGGTCATCATTGTCATTGCT+TGG | 0.493955 | 4_2:+75281637 | None:intergenic |
| CTTACCTCAAGCACAACATC+AGG | 0.497931 | 4_2:+75284438 | None:intergenic |
| GTGACCAGAAACGGCATCCT+CGG | 0.498837 | 4_2:+75283541 | None:intergenic |
| TTGGAGCTTCAGGAGTGACT+AGG | 0.499692 | 4_2:+75281656 | None:intergenic |
| TAACTGAATGTGACCAGAAA+CGG | 0.502172 | 4_2:+75283532 | None:intergenic |
| AGCAAGAATGGCTGTTAACC+AGG | 0.503198 | 4_2:-75284173 | Msa0622670:intron |
| CTTATGGCGCTTCAGAGAAT+GGG | 0.504942 | 4_2:-75286063 | Msa0622670:CDS |
| TCACAGGGAATAGGTGGTGT+AGG | 0.505634 | 4_2:-75285030 | Msa0622670:intron |
| AGCCATACATGGATGGAGTC+AGG | 0.508506 | 4_2:-75284013 | Msa0622670:intron |
| CAAGCTGCATTTGAACATTG+AGG | 0.509271 | 4_2:+75282627 | None:intergenic |
| TCTTCGCGATGCCTTCCATA+AGG | 0.517666 | 4_2:-75286469 | Msa0622670:intron |
| TTGATTGAGAGATTGAAGAT+CGG | 0.528108 | 4_2:+75286509 | None:intergenic |
| AGCGCCATAAGCCGACTGTA+CGG | 0.535161 | 4_2:+75286075 | None:intergenic |
| TGCAGCTTGCTTAAAACGAC+AGG | 0.535724 | 4_2:-75282613 | Msa0622670:intron |
| TGGAAGGCATCGCGAAGAGA+TGG | 0.537472 | 4_2:+75286474 | None:intergenic |
| CTGAATATCACAACAGTGGA+TGG | 0.541895 | 4_2:-75284295 | Msa0622670:CDS |
| AGCGTACACTCAAGCGTGAA+GGG | 0.545932 | 4_2:-75283187 | Msa0622670:CDS |
| AGATAATTATGAAGCAAGAA+TGG | 0.545934 | 4_2:-75284185 | Msa0622670:CDS |
| TGCCGCAAAAGCAAAATTGG+AGG | 0.546768 | 4_2:-75282462 | Msa0622670:CDS |
| ATGCTAACAAGATGTGGTAT+TGG | 0.549949 | 4_2:-75284991 | Msa0622670:CDS |
| AGTACATACAACTATGGCTA+TGG | 0.561645 | 4_2:+75286005 | None:intergenic |
| CACTGCACGATGATAACGAA+TGG | 0.573661 | 4_2:-75282412 | Msa0622670:CDS |
| AATTCAAACAGGTGTTTCCG+AGG | 0.578661 | 4_2:-75283558 | Msa0622670:intron |
| CGCTACAATAGTTACAGTGT+CGG | 0.578893 | 4_2:-75286641 | Msa0622670:five_prime_UTR |
| GAAGGACCATTAGTTGAAGA+AGG | 0.581308 | 4_2:-75282437 | Msa0622670:CDS |
| GTTGTATGATTATGACAAAG+TGG | 0.585959 | 4_2:-75284959 | Msa0622670:CDS |
| GTTACAGATGCCCTTCCTGA+AGG | 0.591789 | 4_2:-75281718 | Msa0622670:intron |
| ACATTCTTGCAAAGCCAACA+AGG | 0.600442 | 4_2:-75282490 | Msa0622670:CDS |
| ATGTAATCACAGGGAATAGG+TGG | 0.600616 | 4_2:-75285036 | Msa0622670:intron |
| AAATCCTGATGTTGTGCTTG+AGG | 0.600789 | 4_2:-75284442 | Msa0622670:intron |
| GAGCGTACACTCAAGCGTGA+AGG | 0.602385 | 4_2:-75283188 | Msa0622670:CDS |
| GTAATGAACTGAGCCATACA+TGG | 0.602739 | 4_2:-75284024 | Msa0622670:CDS |
| TGAACTGAGCCATACATGGA+TGG | 0.602936 | 4_2:-75284020 | Msa0622670:CDS |
| AAAGCAAAATTGGAGGCTGA+AGG | 0.604076 | 4_2:-75282455 | Msa0622670:CDS |
| TCAAATTCAACATTGAGAGA+TGG | 0.605445 | 4_2:-75286556 | Msa0622670:exon |
| CGCGAAGAGATGGATCTGGA+AGG | 0.607082 | 4_2:+75286484 | None:intergenic |
| GCGAAGAGATGGATCTGGAA+GGG | 0.607645 | 4_2:+75286485 | None:intergenic |
| ATCCGCAGTAGGAAGTTCAT+GGG | 0.609669 | 4_2:+75281690 | None:intergenic |
| AGGTGGAATTACCTTATGGA+AGG | 0.613014 | 4_2:+75286458 | None:intergenic |
| CGTCCTAATAAACAAGGTAG+CGG | 0.624820 | 4_2:-75284232 | Msa0622670:CDS |
| CATGGGTGAGACCTTCAGGA+AGG | 0.630867 | 4_2:+75281707 | None:intergenic |
| TAGACAGCAATCCGTACAGT+CGG | 0.634600 | 4_2:-75286086 | Msa0622670:CDS |
| ATGGGTGAGACCTTCAGGAA+GGG | 0.634709 | 4_2:+75281708 | None:intergenic |
| GTTGCCTTCGTAGTTCGTCA+AGG | 0.640073 | 4_2:+75281617 | None:intergenic |
| TTCTGAAATTCATCCGCAGT+AGG | 0.652387 | 4_2:+75281679 | None:intergenic |
| ATTTGCCGTTTACTAACGCG+AGG | 0.653277 | 4_2:-75286676 | Msa0622670:five_prime_UTR |
| CATTCGTTATCATCGTGCAG+TGG | 0.653722 | 4_2:+75282413 | None:intergenic |
| GCTGAGATGCTAACAAGATG+TGG | 0.656177 | 4_2:-75284997 | Msa0622670:CDS |
| TCATTTCGTCCTAATAAACA+AGG | 0.663359 | 4_2:-75284238 | Msa0622670:CDS |
| CACCCATGAACTTCCTACTG+CGG | 0.673339 | 4_2:-75281692 | Msa0622670:CDS |
| GCGTACACTCAAGCGTGAAG+GGG | 0.678168 | 4_2:-75283186 | Msa0622670:CDS |
| ATGACCTTGACGAACTACGA+AGG | 0.678833 | 4_2:-75281621 | Msa0622670:CDS |
| TACACTGAATATCACAACAG+TGG | 0.682172 | 4_2:-75284299 | Msa0622670:CDS |
| CATTCTTGCAAAGCCAACAA+GGG | 0.682459 | 4_2:-75282489 | Msa0622670:CDS |
| GTTGATGATTGTGAGCCAGA+TGG | 0.684872 | 4_2:-75282196 | Msa0622670:CDS |
| TATCTACACAGCTTAAAACA+AGG | 0.688947 | 4_2:+75284203 | None:intergenic |
| TGCATCTTTACCAACTACCA+TGG | 0.694299 | 4_2:-75283156 | Msa0622670:intron |
| TGGCTTATAATGCAGAGAGG+TGG | 0.698896 | 4_2:-75286756 | Msa0622670:five_prime_UTR |
| TAATAAACAAGGTAGCGGCG+TGG | 0.708567 | 4_2:-75284227 | Msa0622670:CDS |
| TGATCAGGATATGAGTGCTG+AGG | 0.720636 | 4_2:-75286112 | Msa0622670:intron |
| TTTGCCGTTTACTAACGCGA+GGG | 0.726727 | 4_2:-75286675 | Msa0622670:five_prime_UTR |
| GAATTGTCGAGAATTACGAA+CGG | 0.742836 | 4_2:-75286041 | Msa0622670:CDS |
| GCTTGGCTTATAATGCAGAG+AGG | 0.757616 | 4_2:-75286759 | Msa0622670:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATACATAAGTTATAAAT+AGG | + | chr4_2:75281471-75281490 | None:intergenic | 10.0% |
| !!! | AAAAAATGTATACAACTTTT+TGG | + | chr4_2:75283454-75283473 | None:intergenic | 15.0% |
| !! | AAAGATAAAATGCTTAAAAT+TGG | - | chr4_2:75284283-75284302 | Msa0622670:CDS | 15.0% |
| !!! | ACTTCTTTTTTTTTAGTATT+CGG | - | chr4_2:75284532-75284551 | Msa0622670:intron | 15.0% |
| !!! | TCTGTTTTTTATTTGAAATT+GGG | - | chr4_2:75284800-75284819 | Msa0622670:intron | 15.0% |
| !! | TATAGAATTAAAATTTACCA+TGG | + | chr4_2:75285123-75285142 | None:intergenic | 15.0% |
| !!! | TTTTCTTTAACAATATTTGT+TGG | - | chr4_2:75286417-75286436 | Msa0622670:intron | 15.0% |
| !! | ACATGCATATCATTATTATA+TGG | + | chr4_2:75282308-75282327 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATGTTTACTCT+TGG | - | chr4_2:75282387-75282406 | Msa0622670:intron | 20.0% |
| !!! | AAAGCAACATACAATTTTAT+AGG | + | chr4_2:75282569-75282588 | None:intergenic | 20.0% |
| !! | CTTTCGATTATGATTTAATT+TGG | - | chr4_2:75282619-75282638 | Msa0622670:CDS | 20.0% |
| !! | ATAAACTATTAAGAAAGATC+CGG | - | chr4_2:75282913-75282932 | Msa0622670:CDS | 20.0% |
| !! | ATATCTCCTTTATTAAATGT+GGG | + | chr4_2:75283091-75283110 | None:intergenic | 20.0% |
| !! | TATATCTCCTTTATTAAATG+TGG | + | chr4_2:75283092-75283111 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTATTTCACATTT+TGG | - | chr4_2:75283172-75283191 | Msa0622670:CDS | 20.0% |
| !!! | CAAAAAATACACTTTACTTT+TGG | + | chr4_2:75283742-75283761 | None:intergenic | 20.0% |
| !!! | CAAAAGTAAAGTGTATTTTT+TGG | - | chr4_2:75283740-75283759 | Msa0622670:intron | 20.0% |
| !!! | ATTTTTCAAAGATGACATAA+AGG | + | chr4_2:75283998-75284017 | None:intergenic | 20.0% |
| !! | TACGTTAAATAATAAATACC+TGG | + | chr4_2:75284107-75284126 | None:intergenic | 20.0% |
| !!! | GTCTGTTTTTTATTTGAAAT+TGG | - | chr4_2:75284799-75284818 | Msa0622670:intron | 20.0% |
| !! | ATACATGAAACATATGATTA+TGG | - | chr4_2:75285015-75285034 | Msa0622670:CDS | 20.0% |
| !! | ATATTACCTTTAATGGTAAA+AGG | + | chr4_2:75285147-75285166 | None:intergenic | 20.0% |
| !! | TATAATAAGACTAAAAGCTT+CGG | + | chr4_2:75285174-75285193 | None:intergenic | 20.0% |
| !! | GCAACAAAAAAGAAAATAAA+TGG | + | chr4_2:75285421-75285440 | None:intergenic | 20.0% |
| !!! | TGAAACTATAAATGTTTTGT+AGG | - | chr4_2:75285740-75285759 | Msa0622670:intron | 20.0% |
| !!! | GAAACTATAAATGTTTTGTA+GGG | - | chr4_2:75285741-75285760 | Msa0622670:intron | 20.0% |
| !! | TTTCAGTTTACTTGTATAAA+GGG | + | chr4_2:75286162-75286181 | None:intergenic | 20.0% |
| !! | ATTTCAGTTTACTTGTATAA+AGG | + | chr4_2:75286163-75286182 | None:intergenic | 20.0% |
| !! | TTTATACAAGTAAACTGAAA+TGG | - | chr4_2:75286162-75286181 | Msa0622670:intron | 20.0% |
| !!! | ATTATCTACAGAAAAACTTT+TGG | - | chr4_2:75286712-75286731 | Msa0622670:five_prime_UTR | 20.0% |
| !!! | GTAGGTTTAACTTTAATTTT+TGG | - | chr4_2:75286753-75286772 | Msa0622670:five_prime_UTR | 20.0% |
| !! | TTGACCATGTTAAAATTATT+TGG | - | chr4_2:75286791-75286810 | Msa0622670:five_prime_UTR | 20.0% |
| ! | AACAATGAACAATATGCTTA+TGG | + | chr4_2:75281394-75281413 | None:intergenic | 25.0% |
| ! | TTATAAATCGTAGAAAAAGG+TGG | + | chr4_2:75281432-75281451 | None:intergenic | 25.0% |
| ! | GAGTTATAAATCGTAGAAAA+AGG | + | chr4_2:75281435-75281454 | None:intergenic | 25.0% |
| ! | TGTATTATAACTTTGTTGCT+TGG | - | chr4_2:75281483-75281502 | Msa0622670:three_prime_UTR | 25.0% |
| ! | ATCAAATGCATGAGATATAT+CGG | - | chr4_2:75281546-75281565 | Msa0622670:three_prime_UTR | 25.0% |
| ! | TACAGTTTCAATTAAGCATT+TGG | - | chr4_2:75281674-75281693 | Msa0622670:CDS | 25.0% |
| ! | AATTGAATAATTGAGAAGAG+AGG | + | chr4_2:75281824-75281843 | None:intergenic | 25.0% |
| ! | ATAAAAAATGCATGCAGAAT+TGG | + | chr4_2:75281856-75281875 | None:intergenic | 25.0% |
| !!! | CGCTTAATTTATTTTCGTTT+TGG | + | chr4_2:75282714-75282733 | None:intergenic | 25.0% |
| ! | AACGAAAATAAATTAAGCGT+AGG | - | chr4_2:75282715-75282734 | Msa0622670:intron | 25.0% |
| ! | GTTTATTCTATAGTTTATCC+AGG | + | chr4_2:75282899-75282918 | None:intergenic | 25.0% |
| !! | ATTTATACTTCAGAGCATTT+AGG | - | chr4_2:75283050-75283069 | Msa0622670:intron | 25.0% |
| ! | TTACTTCCCACATTTAATAA+AGG | - | chr4_2:75283082-75283101 | Msa0622670:intron | 25.0% |
| ! | GTAATTCTTATGTAATCACA+GGG | - | chr4_2:75283214-75283233 | Msa0622670:intron | 25.0% |
| ! | CGAAATTTGATCAGATATTA+TGG | - | chr4_2:75283487-75283506 | Msa0622670:CDS | 25.0% |
| !!! | CATTATGTCTTTTAAGTTGA+AGG | - | chr4_2:75283594-75283613 | Msa0622670:intron | 25.0% |
| ! | AGATAATTATGAAGCAAGAA+TGG | - | chr4_2:75284074-75284093 | Msa0622670:intron | 25.0% |
| ! | ATGTCAATAAAGATGGTTAA+GGG | + | chr4_2:75284309-75284328 | None:intergenic | 25.0% |
| ! | ATTGTGAATTGTCTTAAAGA+AGG | + | chr4_2:75284388-75284407 | None:intergenic | 25.0% |
| ! | ATGCGAAAAAAAATTCAAAC+AGG | - | chr4_2:75284690-75284709 | Msa0622670:intron | 25.0% |
| ! | ATAAAAAACAGACTTACAAG+AGG | + | chr4_2:75284792-75284811 | None:intergenic | 25.0% |
| ! | ACAATAATATAGTCCACATA+TGG | + | chr4_2:75284908-75284927 | None:intergenic | 25.0% |
| ! | TTAAAATTTACCATGGTAGT+TGG | + | chr4_2:75285116-75285135 | None:intergenic | 25.0% |
| !! | CTATATCCTTTTACCATTAA+AGG | - | chr4_2:75285138-75285157 | Msa0622670:intron | 25.0% |
| !!! | AATATGAGTACACTTTTTGA+TGG | - | chr4_2:75285254-75285273 | Msa0622670:intron | 25.0% |
| !!! | AAAATTTTGTTTGACTTTCC+AGG | - | chr4_2:75285295-75285314 | Msa0622670:intron | 25.0% |
| !!! | AAATTTTGTTTGACTTTCCA+GGG | - | chr4_2:75285296-75285315 | Msa0622670:intron | 25.0% |
| !! | ATCTTTTGAACAAAAAAGGA+AGG | + | chr4_2:75285459-75285478 | None:intergenic | 25.0% |
| ! | TATTATATTCCTACGAATCA+TGG | + | chr4_2:75285521-75285540 | None:intergenic | 25.0% |
| ! | TACATACAAGAAAACAGAAA+CGG | + | chr4_2:75285560-75285579 | None:intergenic | 25.0% |
| !! | TTTCTGTTTTCTTGTATGTA+GGG | - | chr4_2:75285560-75285579 | Msa0622670:intron | 25.0% |
| !! | ATGATAACGAATGGAATATA+AGG | - | chr4_2:75285856-75285875 | Msa0622670:intron | 25.0% |
| !!! | ACATTTACTTTTATTGCTGA+AGG | - | chr4_2:75286448-75286467 | Msa0622670:intron | 25.0% |
| !!! | CATTTACTTTTATTGCTGAA+GGG | - | chr4_2:75286449-75286468 | Msa0622670:intron | 25.0% |
| !! | TTTTAATACTTCAAGCAAGT+AGG | - | chr4_2:75286735-75286754 | Msa0622670:five_prime_UTR | 25.0% |
| !!! | ATGGCCAAATAATTTTAACA+TGG | + | chr4_2:75286798-75286817 | None:intergenic | 25.0% |
| TCAAATTCAACATTGAGAGA+TGG | - | chr4_2:75281703-75281722 | Msa0622670:CDS | 30.0% | |
| TTGATTGAGAGATTGAAGAT+CGG | + | chr4_2:75281753-75281772 | None:intergenic | 30.0% | |
| GAGATTAGTACATACAACTA+TGG | + | chr4_2:75282263-75282282 | None:intergenic | 30.0% | |
| ATTATATGGCAAGCAAGTAA+AGG | + | chr4_2:75282294-75282313 | None:intergenic | 30.0% | |
| ! | AAAGAGAGTTTCGACTTTTT+AGG | + | chr4_2:75282372-75282391 | None:intergenic | 30.0% |
| TATCCTTAGTCAAACTTGTA+TGG | - | chr4_2:75282664-75282683 | Msa0622670:CDS | 30.0% | |
| ATCCTTAGTCAAACTTGTAT+GGG | - | chr4_2:75282665-75282684 | Msa0622670:CDS | 30.0% | |
| GGATTTGTAGTAAGATTAGA+CGG | - | chr4_2:75282736-75282755 | Msa0622670:intron | 30.0% | |
| AACACCTATAGTAGAAAAGA+TGG | - | chr4_2:75282799-75282818 | Msa0622670:intron | 30.0% | |
| TAATGAGCTGGATAGAATTA+TGG | - | chr4_2:75282940-75282959 | Msa0622670:CDS | 30.0% | |
| ! | TGGTATATGATAGAGCATTA+TGG | - | chr4_2:75282960-75282979 | Msa0622670:intron | 30.0% |
| TCATACACACAAGTTTAACT+AGG | + | chr4_2:75283010-75283029 | None:intergenic | 30.0% | |
| !! | ATGCAGTTCTGACTATTTTT+GGG | - | chr4_2:75283133-75283152 | Msa0622670:intron | 30.0% |
| GGTAATTCTTATGTAATCAC+AGG | - | chr4_2:75283213-75283232 | Msa0622670:intron | 30.0% | |
| GTTGTATGATTATGACAAAG+TGG | - | chr4_2:75283300-75283319 | Msa0622670:intron | 30.0% | |
| TCTTGTCTTCAAAATAAGAG+CGG | - | chr4_2:75283386-75283405 | Msa0622670:intron | 30.0% | |
| TGTGACAAATCTCACTTAAT+AGG | - | chr4_2:75283524-75283543 | Msa0622670:CDS | 30.0% | |
| CACTTAATAGGAGAAGAATT+TGG | - | chr4_2:75283536-75283555 | Msa0622670:CDS | 30.0% | |
| TTAATAGGAGAAGAATTTGG+TGG | - | chr4_2:75283539-75283558 | Msa0622670:CDS | 30.0% | |
| GCTGACTACATTATATATAC+AGG | - | chr4_2:75283713-75283732 | Msa0622670:intron | 30.0% | |
| !!! | AAGTGTATTTTTTGGCTTTC+AGG | - | chr4_2:75283748-75283767 | Msa0622670:intron | 30.0% |
| !! | AAGCTCTAAATGAAGAGAAA+GGG | + | chr4_2:75283940-75283959 | None:intergenic | 30.0% |
| !! | AAAGCTCTAAATGAAGAGAA+AGG | + | chr4_2:75283941-75283960 | None:intergenic | 30.0% |
| TCATTTCGTCCTAATAAACA+AGG | - | chr4_2:75284021-75284040 | Msa0622670:CDS | 30.0% | |
| TATCTACACAGCTTAAAACA+AGG | + | chr4_2:75284059-75284078 | None:intergenic | 30.0% | |
| CATGTCAATAAAGATGGTTA+AGG | + | chr4_2:75284310-75284329 | None:intergenic | 30.0% | |
| TATGCATTGCTAATTCTTGA+TGG | - | chr4_2:75284626-75284645 | Msa0622670:intron | 30.0% | |
| GTTAATTAAATCCAATCCTG+AGG | + | chr4_2:75284852-75284871 | None:intergenic | 30.0% | |
| TTAACAGCAAACTATGTAAC+CGG | - | chr4_2:75284934-75284953 | Msa0622670:CDS | 30.0% | |
| TGCATACTACATCTAACTTA+CGG | - | chr4_2:75284961-75284980 | Msa0622670:CDS | 30.0% | |
| ! | ATGATTATGGTTTTCCTCTT+AGG | - | chr4_2:75285028-75285047 | Msa0622670:intron | 30.0% |
| CGGAACAATATTACCTTTAA+TGG | + | chr4_2:75285154-75285173 | None:intergenic | 30.0% | |
| CTTATTATACTCGCATTACA+TGG | - | chr4_2:75285185-75285204 | Msa0622670:intron | 30.0% | |
| !!! | CTTTTTGATGGCTATTTCTA+TGG | - | chr4_2:75285266-75285285 | Msa0622670:intron | 30.0% |
| !! | AATTTTGTTTGACTTTCCAG+GGG | - | chr4_2:75285297-75285316 | Msa0622670:intron | 30.0% |
| ! | ACAAGAACTTTAGTGTGTTT+TGG | + | chr4_2:75285343-75285362 | None:intergenic | 30.0% |
| AACACACTAAAGTTCTTGTT+AGG | - | chr4_2:75285344-75285363 | Msa0622670:intron | 30.0% | |
| ! | CTAAAGTTCTTGTTAGGTTT+TGG | - | chr4_2:75285350-75285369 | Msa0622670:intron | 30.0% |
| AGTGCAATACTTACCAAATA+AGG | + | chr4_2:75285386-75285405 | None:intergenic | 30.0% | |
| ! | CGCAATCTTTTGAACAAAAA+AGG | + | chr4_2:75285463-75285482 | None:intergenic | 30.0% |
| ! | GCGAAATTTATTCTTTGAAG+AGG | - | chr4_2:75285480-75285499 | Msa0622670:intron | 30.0% |
| ACATACAAGAAAACAGAAAC+GGG | + | chr4_2:75285559-75285578 | None:intergenic | 30.0% | |
| ! | GTTTCTGTTTTCTTGTATGT+AGG | - | chr4_2:75285559-75285578 | Msa0622670:intron | 30.0% |
| TCATAAAATCATGTGAAACG+TGG | + | chr4_2:75285690-75285709 | None:intergenic | 30.0% | |
| TATAGTTTCAATAACCACAC+AGG | + | chr4_2:75285730-75285749 | None:intergenic | 30.0% | |
| GAGCTGTATGATATACTATA+TGG | - | chr4_2:75285928-75285947 | Msa0622670:intron | 30.0% | |
| !! | TTTTTAGCCTTCACATTTAC+TGG | - | chr4_2:75286015-75286034 | Msa0622670:CDS | 30.0% |
| ! | AATACCTGAACTTTTGGTAT+TGG | + | chr4_2:75286091-75286110 | None:intergenic | 30.0% |
| ! | GAAGTAAATACCTGAACTTT+TGG | + | chr4_2:75286097-75286116 | None:intergenic | 30.0% |
| TACCCTATTGATAAGCTTAA+TGG | - | chr4_2:75286131-75286150 | Msa0622670:intron | 30.0% | |
| ACCCTATTGATAAGCTTAAT+GGG | - | chr4_2:75286132-75286151 | Msa0622670:intron | 30.0% | |
| ACCCATTAAGCTTATCAATA+GGG | + | chr4_2:75286136-75286155 | None:intergenic | 30.0% | |
| AACCCATTAAGCTTATCAAT+AGG | + | chr4_2:75286137-75286156 | None:intergenic | 30.0% | |
| ATACAAGTAAACTGAAATGG+TGG | - | chr4_2:75286165-75286184 | Msa0622670:intron | 30.0% | |
| ! | ATTCTTTCTTTTGAGCTACA+TGG | - | chr4_2:75286242-75286261 | Msa0622670:CDS | 30.0% |
| ! | TTCTTTCTTTTGAGCTACAT+GGG | - | chr4_2:75286243-75286262 | Msa0622670:CDS | 30.0% |
| TTCCTTAAACATTTCCATGA+AGG | + | chr4_2:75286300-75286319 | None:intergenic | 30.0% | |
| TTTCATTGTAGTCGTCAATA+TGG | + | chr4_2:75286817-75286836 | None:intergenic | 30.0% | |
| ! | AATTGCATGCTTCCTTTTAT+GGG | + | chr4_2:75286853-75286872 | None:intergenic | 30.0% |
| ! | AAATTGCATGCTTCCTTTTA+TGG | + | chr4_2:75286854-75286873 | None:intergenic | 30.0% |
| TGAATAATTGAGAAGAGAGG+TGG | + | chr4_2:75281821-75281840 | None:intergenic | 35.0% | |
| AGCATATTGCTGATCTTGTT+AGG | - | chr4_2:75282012-75282031 | Msa0622670:intron | 35.0% | |
| GCATATTGCTGATCTTGTTA+GGG | - | chr4_2:75282013-75282032 | Msa0622670:intron | 35.0% | |
| ! | CAAGTACCTTAACTTTTGTG+CGG | + | chr4_2:75282052-75282071 | None:intergenic | 35.0% |
| ! | TTGTTGTTACTGTGTTGATC+AGG | - | chr4_2:75282132-75282151 | Msa0622670:intron | 35.0% |
| GAATTGTCGAGAATTACGAA+CGG | - | chr4_2:75282218-75282237 | Msa0622670:intron | 35.0% | |
| AGTACATACAACTATGGCTA+TGG | + | chr4_2:75282257-75282276 | None:intergenic | 35.0% | |
| TTTAGGTATTATGCTTGCAC+CGG | + | chr4_2:75282355-75282374 | None:intergenic | 35.0% | |
| AAAGTAGAGCTATATGCCAT+TGG | - | chr4_2:75282534-75282553 | Msa0622670:intron | 35.0% | |
| TTATAGGTCCACATATCCAA+TGG | + | chr4_2:75282553-75282572 | None:intergenic | 35.0% | |
| TTTGGTAGAGAAGACTTTGT+TGG | - | chr4_2:75282637-75282656 | Msa0622670:CDS | 35.0% | |
| ACAACATTAGAGAGAGAGTT+GGG | - | chr4_2:75282774-75282793 | Msa0622670:intron | 35.0% | |
| ACCTATAGTAGAAAAGATGG+TGG | - | chr4_2:75282802-75282821 | Msa0622670:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACTAT+AGG | + | chr4_2:75282806-75282825 | None:intergenic | 35.0% |
| AAACTTGTGTGTATGATTGC+TGG | - | chr4_2:75283014-75283033 | Msa0622670:intron | 35.0% | |
| AGATATAATCACACCAAGCT+AGG | - | chr4_2:75283105-75283124 | Msa0622670:intron | 35.0% | |
| !! | CATGCAGTTCTGACTATTTT+TGG | - | chr4_2:75283132-75283151 | Msa0622670:intron | 35.0% |
| ! | GGGTTTTCTACGAAATCTTT+AGG | - | chr4_2:75283153-75283172 | Msa0622670:intron | 35.0% |
| CTTATGTAATCACAGGGAAT+AGG | - | chr4_2:75283220-75283239 | Msa0622670:intron | 35.0% | |
| ATGCTAACAAGATGTGGTAT+TGG | - | chr4_2:75283268-75283287 | Msa0622670:intron | 35.0% | |
| TGGAACTTGCAAACATGAAT+AGG | - | chr4_2:75283320-75283339 | Msa0622670:intron | 35.0% | |
| CTTGTCTTCAAAATAAGAGC+GGG | - | chr4_2:75283387-75283406 | Msa0622670:intron | 35.0% | |
| AAAATAAGAGCGGGATATGA+TGG | - | chr4_2:75283396-75283415 | Msa0622670:intron | 35.0% | |
| TTTGTAACATGGTAGGCATA+TGG | + | chr4_2:75283881-75283900 | None:intergenic | 35.0% | |
| ATTCGTCTTTGTAACATGGT+AGG | + | chr4_2:75283888-75283907 | None:intergenic | 35.0% | |
| CTAGATTCGTCTTTGTAACA+TGG | + | chr4_2:75283892-75283911 | None:intergenic | 35.0% | |
| TACACTGAATATCACAACAG+TGG | - | chr4_2:75283960-75283979 | Msa0622670:intron | 35.0% | |
| TCTGCACATGTCAATAAAGA+TGG | + | chr4_2:75284316-75284335 | None:intergenic | 35.0% | |
| TAACTGAATGTGACCAGAAA+CGG | + | chr4_2:75284730-75284749 | None:intergenic | 35.0% | |
| CACATTCAGTTACTTATTCC+TGG | - | chr4_2:75284738-75284757 | Msa0622670:intron | 35.0% | |
| GTTACTTATTCCTGGAGAAA+CGG | - | chr4_2:75284746-75284765 | Msa0622670:intron | 35.0% | |
| AAAAACAGACTTACAAGAGG+AGG | + | chr4_2:75284789-75284808 | None:intergenic | 35.0% | |
| GTATTGTTCACAATTGACAG+TGG | - | chr4_2:75284822-75284841 | Msa0622670:intron | 35.0% | |
| TTCAGAATGTCATCCATATG+TGG | - | chr4_2:75284892-75284911 | Msa0622670:intron | 35.0% | |
| TAGATGTAGTATGCATGAAC+CGG | + | chr4_2:75284956-75284975 | None:intergenic | 35.0% | |
| ACATCTAACTTACGGACAAT+AGG | - | chr4_2:75284969-75284988 | Msa0622670:CDS | 35.0% | |
| !! | ATTTTGTTTGACTTTCCAGG+GGG | - | chr4_2:75285298-75285317 | Msa0622670:intron | 35.0% |
| TATATTCCTACGAATCATGG+TGG | + | chr4_2:75285518-75285537 | None:intergenic | 35.0% | |
| TTGGCTTCATTTGCATAGTT+GGG | + | chr4_2:75285610-75285629 | None:intergenic | 35.0% | |
| ! | TTTGGCTTCATTTGCATAGT+TGG | + | chr4_2:75285611-75285630 | None:intergenic | 35.0% |
| AAGCTGCATTTGAACATTGA+GGG | + | chr4_2:75285634-75285653 | None:intergenic | 35.0% | |
| AAGTCATGTATTATCCTGTG+TGG | - | chr4_2:75285713-75285732 | Msa0622670:intron | 35.0% | |
| !! | ACTCTAAAGCTCTTGATGTT+GGG | - | chr4_2:75286216-75286235 | Msa0622670:intron | 35.0% |
| CTCCTTCATGGAAATGTTTA+AGG | - | chr4_2:75286295-75286314 | Msa0622670:intron | 35.0% | |
| ! | CAATGAAGGTGCAATACAAA+AGG | + | chr4_2:75286330-75286349 | None:intergenic | 35.0% |
| !! | GATGTTTGCTTTTGCAATGA+AGG | + | chr4_2:75286344-75286363 | None:intergenic | 35.0% |
| ATGCAATCTTCACCCATAAA+AGG | - | chr4_2:75286838-75286857 | Msa0622670:five_prime_UTR | 35.0% | |
| CGCTACAATAGTTACAGTGT+CGG | - | chr4_2:75281618-75281637 | Msa0622670:CDS | 40.0% | |
| ! | AGTTACAGTGTCGGAGAAAT+TGG | - | chr4_2:75281627-75281646 | Msa0622670:CDS | 40.0% |
| AGGTGGAATTACCTTATGGA+AGG | + | chr4_2:75281804-75281823 | None:intergenic | 40.0% | |
| AGAGAGGTGGAATTACCTTA+TGG | + | chr4_2:75281808-75281827 | None:intergenic | 40.0% | |
| ATGCATGCAGAATTGGATCA+TGG | + | chr4_2:75281849-75281868 | None:intergenic | 40.0% | |
| TCGAGAATTACGAACGGATA+AGG | - | chr4_2:75282224-75282243 | Msa0622670:intron | 40.0% | |
| CGAGAATTACGAACGGATAA+GGG | - | chr4_2:75282225-75282244 | Msa0622670:intron | 40.0% | |
| AACTGTTCACTCACTATCAC+CGG | - | chr4_2:75282333-75282352 | Msa0622670:intron | 40.0% | |
| GCTATATGCCATTGGATATG+TGG | - | chr4_2:75282542-75282561 | Msa0622670:intron | 40.0% | |
| GTCCCATACAAGTTTGACTA+AGG | + | chr4_2:75282670-75282689 | None:intergenic | 40.0% | |
| ACTTGTATGGGACATAGTGT+TGG | - | chr4_2:75282677-75282696 | Msa0622670:CDS | 40.0% | |
| CTTGTATGGGACATAGTGTT+GGG | - | chr4_2:75282678-75282697 | Msa0622670:CDS | 40.0% | |
| GACAACATTAGAGAGAGAGT+TGG | - | chr4_2:75282773-75282792 | Msa0622670:intron | 40.0% | |
| CAACATTAGAGAGAGAGTTG+GGG | - | chr4_2:75282775-75282794 | Msa0622670:intron | 40.0% | |
| !! | AGATGGTGGAAACTAGACTT+AGG | - | chr4_2:75282816-75282835 | Msa0622670:intron | 40.0% |
| CTCTTGATCTGATCTACATG+CGG | + | chr4_2:75282848-75282867 | None:intergenic | 40.0% | |
| CTATCCAGCTCATTAATCTC+CGG | + | chr4_2:75282935-75282954 | None:intergenic | 40.0% | |
| TGGCATCGTTTGATAAAGCA+TGG | - | chr4_2:75282980-75282999 | Msa0622670:intron | 40.0% | |
| TGGCAATAAGTTCTCACGTT+TGG | - | chr4_2:75283192-75283211 | Msa0622670:CDS | 40.0% | |
| ATGTAATCACAGGGAATAGG+TGG | - | chr4_2:75283223-75283242 | Msa0622670:intron | 40.0% | |
| ATTTGAGTGCTCACTTGATC+AGG | + | chr4_2:75283358-75283377 | None:intergenic | 40.0% | |
| ! | ATAGGAGAAGAATTTGGTGG+TGG | - | chr4_2:75283542-75283561 | Msa0622670:CDS | 40.0% |
| !!! | GTATTTTTTGGCTTTCAGGC+TGG | - | chr4_2:75283752-75283771 | Msa0622670:intron | 40.0% |
| AAATCCTGATGTTGTGCTTG+AGG | - | chr4_2:75283817-75283836 | Msa0622670:intron | 40.0% | |
| CTGAATATCACAACAGTGGA+TGG | - | chr4_2:75283964-75283983 | Msa0622670:intron | 40.0% | |
| CGTCCTAATAAACAAGGTAG+CGG | - | chr4_2:75284027-75284046 | Msa0622670:CDS | 40.0% | |
| GTAATGAACTGAGCCATACA+TGG | - | chr4_2:75284235-75284254 | Msa0622670:CDS | 40.0% | |
| AGGTCTGGATACTTTCAAAG+AGG | + | chr4_2:75284463-75284482 | None:intergenic | 40.0% | |
| TGCATCTGTGTACATTTAGC+TGG | - | chr4_2:75284494-75284513 | Msa0622670:intron | 40.0% | |
| TTCGGTACTATGACTATCTC+AGG | - | chr4_2:75284550-75284569 | Msa0622670:intron | 40.0% | |
| TCGGTACTATGACTATCTCA+GGG | - | chr4_2:75284551-75284570 | Msa0622670:intron | 40.0% | |
| TTGTGCTTGTGCATTCTACT+AGG | - | chr4_2:75284601-75284620 | Msa0622670:intron | 40.0% | |
| AATTCAAACAGGTGTTTCCG+AGG | - | chr4_2:75284701-75284720 | Msa0622670:intron | 40.0% | |
| TGCATCTTTACCAACTACCA+TGG | - | chr4_2:75285103-75285122 | Msa0622670:intron | 40.0% | |
| !! | GATGGCTATTTCTATGGACT+TGG | - | chr4_2:75285272-75285291 | Msa0622670:intron | 40.0% |
| TGGTCAAGTCTCTCCTTATT+TGG | - | chr4_2:75285370-75285389 | Msa0622670:intron | 40.0% | |
| AGAAACGGGATGTCATCATA+AGG | + | chr4_2:75285545-75285564 | None:intergenic | 40.0% | |
| GCATTTGAACATTGAGGGTT+TGG | + | chr4_2:75285629-75285648 | None:intergenic | 40.0% | |
| CAAGCTGCATTTGAACATTG+AGG | + | chr4_2:75285635-75285654 | None:intergenic | 40.0% | |
| CTTGCTTAAAACGACAGGTA+AGG | - | chr4_2:75285651-75285670 | Msa0622670:intron | 40.0% | |
| ACATTCTTGCAAAGCCAACA+AGG | - | chr4_2:75285769-75285788 | Msa0622670:intron | 40.0% | |
| CATTCTTGCAAAGCCAACAA+GGG | - | chr4_2:75285770-75285789 | Msa0622670:intron | 40.0% | |
| !! | AGCCTCCAATTTTGCTTTTG+CGG | + | chr4_2:75285802-75285821 | None:intergenic | 40.0% |
| AAAGCAAAATTGGAGGCTGA+AGG | - | chr4_2:75285804-75285823 | Msa0622670:intron | 40.0% | |
| GAAGGACCATTAGTTGAAGA+AGG | - | chr4_2:75285822-75285841 | Msa0622670:intron | 40.0% | |
| AGTGGACCTTCTTCAACTAA+TGG | + | chr4_2:75285831-75285850 | None:intergenic | 40.0% | |
| ! | TTAGCCTTCACATTTACTGG+TGG | - | chr4_2:75286018-75286037 | Msa0622670:CDS | 40.0% |
| AAAGCCACCAGTAAATGTGA+AGG | + | chr4_2:75286025-75286044 | None:intergenic | 40.0% | |
| !!! | CTTTTGGTATTGGTACCATC+TGG | + | chr4_2:75286081-75286100 | None:intergenic | 40.0% |
| GGTACCAATACCAAAAGTTC+AGG | - | chr4_2:75286084-75286103 | Msa0622670:CDS | 40.0% | |
| !! | GACTCTAAAGCTCTTGATGT+TGG | - | chr4_2:75286215-75286234 | Msa0622670:intron | 40.0% |
| ! | TGTTTCATCTAGCTCCTTCA+TGG | - | chr4_2:75286283-75286302 | Msa0622670:intron | 40.0% |
| GTAACAGATTTGGGGATAAG+AGG | + | chr4_2:75286526-75286545 | None:intergenic | 40.0% | |
| ! | AGGGCATCTGTAACAGATTT+GGG | + | chr4_2:75286535-75286554 | None:intergenic | 40.0% |
| !! | AAGGGCATCTGTAACAGATT+TGG | + | chr4_2:75286536-75286555 | None:intergenic | 40.0% |
| !! | TTCTGAAATTCATCCGCAGT+AGG | + | chr4_2:75286583-75286602 | None:intergenic | 40.0% |
| AGGTCATCATTGTCATTGCT+TGG | + | chr4_2:75286625-75286644 | None:intergenic | 40.0% | |
| GCTTGGCTTATAATGCAGAG+AGG | - | chr4_2:75281500-75281519 | Msa0622670:three_prime_UTR | 45.0% | |
| TGGCTTATAATGCAGAGAGG+TGG | - | chr4_2:75281503-75281522 | Msa0622670:three_prime_UTR | 45.0% | |
| TAATGCAGAGAGGTGGTTGT+TGG | - | chr4_2:75281510-75281529 | Msa0622670:three_prime_UTR | 45.0% | |
| ! | ATTTGCCGTTTACTAACGCG+AGG | - | chr4_2:75281583-75281602 | Msa0622670:exon | 45.0% |
| ! | TTTGCCGTTTACTAACGCGA+GGG | - | chr4_2:75281584-75281603 | Msa0622670:exon | 45.0% |
| TCTTCCCTCGCGTTAGTAAA+CGG | + | chr4_2:75281591-75281610 | None:intergenic | 45.0% | |
| ! | TTAACTTTTGTGCGGCGAAC+AGG | + | chr4_2:75282044-75282063 | None:intergenic | 45.0% |
| TGTTCGCCGCACAAAAGTTA+AGG | - | chr4_2:75282043-75282062 | Msa0622670:intron | 45.0% | |
| AGGTACTTGCTTTGTGCTTG+TGG | - | chr4_2:75282063-75282082 | Msa0622670:intron | 45.0% | |
| TACTTGCTTTGTGCTTGTGG+TGG | - | chr4_2:75282066-75282085 | Msa0622670:intron | 45.0% | |
| ! | TGATCAGGATATGAGTGCTG+AGG | - | chr4_2:75282147-75282166 | Msa0622670:intron | 45.0% |
| TAGACAGCAATCCGTACAGT+CGG | - | chr4_2:75282173-75282192 | Msa0622670:intron | 45.0% | |
| CTTATGGCGCTTCAGAGAAT+GGG | - | chr4_2:75282196-75282215 | Msa0622670:CDS | 45.0% | |
| CAAGCAAGTAAAGGTAGAGG+AGG | + | chr4_2:75282285-75282304 | None:intergenic | 45.0% | |
| TGGCAAGCAAGTAAAGGTAG+AGG | + | chr4_2:75282288-75282307 | None:intergenic | 45.0% | |
| GAAAGACGATATCGCAGCAA+TGG | + | chr4_2:75282604-75282623 | None:intergenic | 45.0% | |
| TGGTGGAAACTAGACTTAGG+TGG | - | chr4_2:75282819-75282838 | Msa0622670:intron | 45.0% | |
| AGTCAAACCAGTAGATGCAG+AGG | - | chr4_2:75282869-75282888 | Msa0622670:intron | 45.0% | |
| ! | AGGTTTTCCTCTGCATCTAC+TGG | + | chr4_2:75282879-75282898 | None:intergenic | 45.0% |
| AGTAGATGCAGAGGAAAACC+TGG | - | chr4_2:75282878-75282897 | Msa0622670:intron | 45.0% | |
| AGATCCGGAGATTAATGAGC+TGG | - | chr4_2:75282928-75282947 | Msa0622670:CDS | 45.0% | |
| AACTGCATGTTCTCCTAGCT+TGG | + | chr4_2:75283121-75283140 | None:intergenic | 45.0% | |
| GCTGAGATGCTAACAAGATG+TGG | - | chr4_2:75283262-75283281 | Msa0622670:intron | 45.0% | |
| CTTACCTCAAGCACAACATC+AGG | + | chr4_2:75283824-75283843 | None:intergenic | 45.0% | |
| GCATATGGAATGAGTCACAG+AGG | + | chr4_2:75283866-75283885 | None:intergenic | 45.0% | |
| ! | ACGCCGCTACCTTGTTTATT+AGG | + | chr4_2:75284033-75284052 | None:intergenic | 45.0% |
| ! | TAATAAACAAGGTAGCGGCG+TGG | - | chr4_2:75284032-75284051 | Msa0622670:intron | 45.0% |
| AGCAAGAATGGCTGTTAACC+AGG | - | chr4_2:75284086-75284105 | Msa0622670:intron | 45.0% | |
| TAACTTCCTATGCACACTGC+AGG | - | chr4_2:75284209-75284228 | Msa0622670:CDS | 45.0% | |
| TGAACTGAGCCATACATGGA+TGG | - | chr4_2:75284239-75284258 | Msa0622670:CDS | 45.0% | |
| AGTATCCAGACCTTGACAAG+TGG | - | chr4_2:75284470-75284489 | Msa0622670:CDS | 45.0% | |
| ACAGATGCATCCACTTGTCA+AGG | + | chr4_2:75284483-75284502 | None:intergenic | 45.0% | |
| AATTGACAGTGGAATGCCTC+AGG | - | chr4_2:75284833-75284852 | Msa0622670:intron | 45.0% | |
| ! | TCCTCTTAGGTTGTAGCATC+TGG | - | chr4_2:75285041-75285060 | Msa0622670:intron | 45.0% |
| ! | CCTCTTAGGTTGTAGCATCT+GGG | - | chr4_2:75285042-75285061 | Msa0622670:intron | 45.0% |
| ACGAATCATGGTGGTCTCAT+CGG | + | chr4_2:75285509-75285528 | None:intergenic | 45.0% | |
| ATGAGACCACCATGATTCGT+AGG | - | chr4_2:75285509-75285528 | Msa0622670:intron | 45.0% | |
| ! | TGCAGCTTGCTTAAAACGAC+AGG | - | chr4_2:75285646-75285665 | Msa0622670:intron | 45.0% |
| TGCTGCCGCAAAAGCAAAAT+TGG | - | chr4_2:75285794-75285813 | Msa0622670:intron | 45.0% | |
| TGCCGCAAAAGCAAAATTGG+AGG | - | chr4_2:75285797-75285816 | Msa0622670:intron | 45.0% | |
| CATTCGTTATCATCGTGCAG+TGG | + | chr4_2:75285849-75285868 | None:intergenic | 45.0% | |
| ! | CACTGCACGATGATAACGAA+TGG | - | chr4_2:75285847-75285866 | Msa0622670:intron | 45.0% |
| !! | GTTGATGATTGTGAGCCAGA+TGG | - | chr4_2:75286063-75286082 | Msa0622670:CDS | 45.0% |
| ! | TCTTTTGAGCTACATGGGCT+TGG | - | chr4_2:75286248-75286267 | Msa0622670:CDS | 45.0% |
| GGGCATCTGTAACAGATTTG+GGG | + | chr4_2:75286534-75286553 | None:intergenic | 45.0% | |
| ATCCGCAGTAGGAAGTTCAT+GGG | + | chr4_2:75286572-75286591 | None:intergenic | 45.0% | |
| TTGTCATTGCTTGGAGCTTC+AGG | + | chr4_2:75286616-75286635 | None:intergenic | 45.0% | |
| ATGACCTTGACGAACTACGA+AGG | - | chr4_2:75286638-75286657 | Msa0622670:five_prime_UTR | 45.0% | |
| !!! | AAATCTTATTTATTTATTTA+TGG | - | chr4_2:75282494-75282513 | Msa0622670:CDS | 5.0% |
| GCGAAGAGATGGATCTGGAA+GGG | + | chr4_2:75281777-75281796 | None:intergenic | 50.0% | |
| TCTTCGCGATGCCTTCCATA+AGG | - | chr4_2:75281790-75281809 | Msa0622670:intron | 50.0% | |
| ! | CAATCCGTACAGTCGGCTTA+TGG | - | chr4_2:75282180-75282199 | Msa0622670:CDS | 50.0% |
| GCTTATGGCGCTTCAGAGAA+TGG | - | chr4_2:75282195-75282214 | Msa0622670:CDS | 50.0% | |
| TCACAGGGAATAGGTGGTGT+AGG | - | chr4_2:75283229-75283248 | Msa0622670:intron | 50.0% | |
| TACAAGCCTGCAGTGTGCAT+AGG | + | chr4_2:75284218-75284237 | None:intergenic | 50.0% | |
| AGCCATACATGGATGGAGTC+AGG | - | chr4_2:75284246-75284265 | Msa0622670:CDS | 50.0% | |
| CACCTGACTCCATCCATGTA+TGG | + | chr4_2:75284251-75284270 | None:intergenic | 50.0% | |
| TGCATCCACTTGTCAAGGTC+TGG | + | chr4_2:75284478-75284497 | None:intergenic | 50.0% | |
| ACAGTGGAATGCCTCAGGAT+TGG | - | chr4_2:75284838-75284857 | Msa0622670:intron | 50.0% | |
| CCCAGATGCTACAACCTAAG+AGG | + | chr4_2:75285045-75285064 | None:intergenic | 50.0% | |
| AGCGTACACTCAAGCGTGAA+GGG | - | chr4_2:75285072-75285091 | Msa0622670:intron | 50.0% | |
| ACTTTCCAGGGGGTTATTGC+TGG | - | chr4_2:75285308-75285327 | Msa0622670:intron | 50.0% | |
| CTTTCCAGGGGGTTATTGCT+GGG | - | chr4_2:75285309-75285328 | Msa0622670:intron | 50.0% | |
| GTTACAGATGCCCTTCCTGA+AGG | - | chr4_2:75286541-75286560 | Msa0622670:exon | 50.0% | |
| ATGGGTGAGACCTTCAGGAA+GGG | + | chr4_2:75286554-75286573 | None:intergenic | 50.0% | |
| AGTTCATGGGTGAGACCTTC+AGG | + | chr4_2:75286559-75286578 | None:intergenic | 50.0% | |
| CACCCATGAACTTCCTACTG+CGG | - | chr4_2:75286567-75286586 | Msa0622670:five_prime_UTR | 50.0% | |
| CATCCGCAGTAGGAAGTTCA+TGG | + | chr4_2:75286573-75286592 | None:intergenic | 50.0% | |
| TTGGAGCTTCAGGAGTGACT+AGG | + | chr4_2:75286606-75286625 | None:intergenic | 50.0% | |
| GTTGCCTTCGTAGTTCGTCA+AGG | + | chr4_2:75286645-75286664 | None:intergenic | 50.0% | |
| CGCGAAGAGATGGATCTGGA+AGG | + | chr4_2:75281778-75281797 | None:intergenic | 55.0% | |
| GCATCGCGAAGAGATGGATC+TGG | + | chr4_2:75281782-75281801 | None:intergenic | 55.0% | |
| !! | TGGAAGGCATCGCGAAGAGA+TGG | + | chr4_2:75281788-75281807 | None:intergenic | 55.0% |
| AGCGCCATAAGCCGACTGTA+CGG | + | chr4_2:75282187-75282206 | None:intergenic | 55.0% | |
| ! | GTTTCCGAGGATGCCGTTTC+TGG | - | chr4_2:75284714-75284733 | Msa0622670:intron | 55.0% |
| GTGACCAGAAACGGCATCCT+CGG | + | chr4_2:75284721-75284740 | None:intergenic | 55.0% | |
| GCAAAACAGGCCGTTTCTCC+AGG | + | chr4_2:75284759-75284778 | None:intergenic | 55.0% | |
| ! | AGGAGGAGCGCATGCAAAAC+AGG | + | chr4_2:75284772-75284791 | None:intergenic | 55.0% |
| GAGCGTACACTCAAGCGTGA+AGG | - | chr4_2:75285071-75285090 | Msa0622670:intron | 55.0% | |
| GCGTACACTCAAGCGTGAAG+GGG | - | chr4_2:75285073-75285092 | Msa0622670:intron | 55.0% | |
| TTTGCGGCAGCATCCCTTGT+TGG | + | chr4_2:75285786-75285805 | None:intergenic | 55.0% | |
| CATGGGTGAGACCTTCAGGA+AGG | + | chr4_2:75286555-75286574 | None:intergenic | 55.0% | |
| GAAGCCCAGCAATAACCCCC+TGG | + | chr4_2:75285316-75285335 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75281390 | 75286891 | 75281390 | ID=Msa0622670;Name=Msa0622670 |
| chr4_2 | mRNA | 75281390 | 75286891 | 75281390 | ID=Msa0622670-mRNA-1;Parent=Msa0622670;Name=Msa0622670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=332|1|1|1|1|1|14|204|427 |
| chr4_2 | exon | 75281390 | 75281733 | 75281390 | ID=Msa0622670-mRNA-1:exon:22846;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75282176 | 75282222 | 75282176 | ID=Msa0622670-mRNA-1:exon:22845;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75282404 | 75282519 | 75282404 | ID=Msa0622670-mRNA-1:exon:22844;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75282614 | 75282700 | 75282614 | ID=Msa0622670-mRNA-1:exon:22843;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75282890 | 75282964 | 75282890 | ID=Msa0622670-mRNA-1:exon:22842;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75283157 | 75283231 | 75283157 | ID=Msa0622670-mRNA-1:exon:22841;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75283487 | 75283569 | 75283487 | ID=Msa0622670-mRNA-1:exon:22840;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75284014 | 75284050 | 75284014 | ID=Msa0622670-mRNA-1:exon:22839;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75284174 | 75284326 | 75284174 | ID=Msa0622670-mRNA-1:exon:22838;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75284443 | 75284511 | 75284443 | ID=Msa0622670-mRNA-1:exon:22837;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75284918 | 75285046 | 75284918 | ID=Msa0622670-mRNA-1:exon:22836;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75286014 | 75286127 | 75286014 | ID=Msa0622670-mRNA-1:exon:22835;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75286217 | 75286285 | 75286217 | ID=Msa0622670-mRNA-1:exon:22834;Parent=Msa0622670-mRNA-1 |
| chr4_2 | exon | 75286470 | 75286891 | 75286470 | ID=Msa0622670-mRNA-1:exon:22833;Parent=Msa0622670-mRNA-1 |
| chr4_2 | five_prime_UTR | 75286560 | 75286891 | 75286560 | ID=Msa0622670-mRNA-1:five_prime_utr;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75286470 | 75286559 | 75286470 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75286217 | 75286285 | 75286217 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75286014 | 75286127 | 75286014 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75284918 | 75285046 | 75284918 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75284443 | 75284511 | 75284443 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75284174 | 75284326 | 75284174 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75284014 | 75284050 | 75284014 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75283487 | 75283569 | 75283487 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75283157 | 75283231 | 75283157 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75282890 | 75282964 | 75282890 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75282614 | 75282700 | 75282614 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75282404 | 75282519 | 75282404 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75282176 | 75282222 | 75282176 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | CDS | 75281594 | 75281733 | 75281594 | ID=Msa0622670-mRNA-1:cds;Parent=Msa0622670-mRNA-1 |
| chr4_2 | three_prime_UTR | 75281390 | 75281593 | 75281390 | ID=Msa0622670-mRNA-1:three_prime_utr;Parent=Msa0622670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
