Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623930 | XP_039687244.1 | 87.591 | 137 | 7 | 1 | 166 | 292 | 1 | 137 | 4.58e-77 | 243 |
| Msa0623930 | XP_039687244.1 | 90.164 | 61 | 6 | 0 | 105 | 165 | 42 | 102 | 1.10e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623930 | sp|Q8H1G0|GAT28_ARATH | 66.667 | 102 | 34 | 0 | 191 | 292 | 156 | 257 | 3.12e-41 | 149 |
| Msa0623930 | sp|Q8H1G0|GAT28_ARATH | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.07e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0623930 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623930 | Msa0626310 | 0.936670 | 1.197437e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623930 | MtrunA17_Chr4g0002231 | 85.185 | 135 | 12 | 1 | 166 | 292 | 1 | 135 | 4.40e-79 | 238 |
| Msa0623930 | MtrunA17_Chr4g0002231 | 89.831 | 59 | 6 | 0 | 107 | 165 | 42 | 100 | 1.88e-27 | 105 |
| Msa0623930 | MtrunA17_Chr3g0132761 | 51.020 | 147 | 56 | 4 | 151 | 292 | 99 | 234 | 5.00e-33 | 124 |
| Msa0623930 | MtrunA17_Chr3g0132761 | 68.889 | 45 | 14 | 0 | 89 | 133 | 131 | 175 | 8.91e-11 | 62.0 |
| Msa0623930 | MtrunA17_Chr5g0427661 | 53.659 | 123 | 43 | 4 | 173 | 292 | 126 | 237 | 1.35e-29 | 114 |
| Msa0623930 | MtrunA17_Chr3g0132751 | 51.923 | 104 | 41 | 3 | 191 | 292 | 140 | 236 | 3.92e-26 | 107 |
| Msa0623930 | MtrunA17_Chr4g0065421 | 62.222 | 90 | 28 | 1 | 1 | 84 | 1 | 90 | 1.01e-24 | 104 |
| Msa0623930 | MtrunA17_Chr4g0049741 | 51.961 | 102 | 42 | 2 | 191 | 292 | 117 | 211 | 1.49e-24 | 102 |
| Msa0623930 | MtrunA17_Chr4g0002251 | 87.500 | 32 | 4 | 0 | 257 | 288 | 8 | 39 | 4.69e-15 | 69.3 |
| Msa0623930 | MtrunA17_Chr4g0002261 | 61.538 | 52 | 19 | 1 | 81 | 131 | 15 | 66 | 6.23e-13 | 63.2 |
| Msa0623930 | MtrunA17_Chr3g0102511 | 40.230 | 87 | 44 | 3 | 206 | 292 | 4 | 82 | 1.33e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623930 | AT1G51600.1 | 66.667 | 102 | 34 | 0 | 191 | 292 | 156 | 257 | 3.17e-42 | 149 |
| Msa0623930 | AT1G51600.1 | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.09e-18 | 85.5 |
| Msa0623930 | AT1G51600.2 | 66.667 | 102 | 34 | 0 | 191 | 292 | 156 | 257 | 3.17e-42 | 149 |
| Msa0623930 | AT1G51600.2 | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.09e-18 | 85.5 |
| Msa0623930 | AT3G21175.1 | 60.784 | 102 | 40 | 0 | 191 | 292 | 152 | 253 | 1.88e-38 | 139 |
| Msa0623930 | AT3G21175.1 | 46.939 | 98 | 49 | 2 | 81 | 178 | 134 | 228 | 6.19e-15 | 74.7 |
| Msa0623930 | AT3G21175.2 | 60.784 | 102 | 40 | 0 | 191 | 292 | 150 | 251 | 2.05e-38 | 139 |
| Msa0623930 | AT3G21175.2 | 46.939 | 98 | 49 | 2 | 81 | 178 | 132 | 226 | 6.67e-15 | 74.7 |
| Msa0623930 | AT4G24470.3 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 2.75e-29 | 115 |
| Msa0623930 | AT4G24470.1 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 2.90e-29 | 114 |
| Msa0623930 | AT4G24470.2 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 2.90e-29 | 114 |
| Msa0623930 | AT3G21175.3 | 51.429 | 70 | 34 | 0 | 81 | 150 | 132 | 201 | 1.44e-15 | 75.1 |
| Msa0623930 | AT3G21175.3 | 59.615 | 52 | 21 | 0 | 191 | 242 | 150 | 201 | 7.16e-13 | 67.4 |
Find 88 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4_3:-1733463 | Msa0623930:intron |
| AATTTGGTTTCTTCCGGTTT+TGG | 0.255949 | 4_3:+1737639 | None:intergenic |
| AATTGAAGAAAGAGGAAGTT+AGG | 0.270252 | 4_3:+1737965 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_3:+1733495 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_3:+1733486 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.303190 | 4_3:-1733857 | Msa0623930:intron |
| GAAAGAGGAAGTTAGGGTTT+TGG | 0.321403 | 4_3:+1737972 | None:intergenic |
| AAATAACTTGCCTCAAAACT+TGG | 0.327567 | 4_3:-1732237 | Msa0623930:CDS |
| TTCTGTTCGTAGCCATTGAC+TGG | 0.328675 | 4_3:-1733013 | Msa0623930:intron |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_3:-1736227 | Msa0623930:intron |
| TCTGTGAGAAAGTGTAAATT+TGG | 0.338132 | 4_3:+1737685 | None:intergenic |
| GAAATCTAAACCTTTGAAAT+CGG | 0.338857 | 4_3:+1737730 | None:intergenic |
| GTTGGAGAGTTGGGAGGCTT+TGG | 0.340553 | 4_3:+1737841 | None:intergenic |
| TGTCAAAATTTGGTTTCTTC+CGG | 0.341377 | 4_3:+1737633 | None:intergenic |
| TCGACATAACAATGAAATAA+TGG | 0.356687 | 4_3:-1737882 | Msa0623930:CDS |
| TTCTCACAGATTAGCTTCAT+TGG | 0.358559 | 4_3:-1737672 | Msa0623930:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_3:-1733777 | Msa0623930:CDS |
| AACCCTCTCGTTGGAGAGTT+GGG | 0.386351 | 4_3:+1737832 | None:intergenic |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_3:+1733513 | None:intergenic |
| AGTGTAAATTTGGGTGAAGT+AGG | 0.428207 | 4_3:+1737695 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.431240 | 4_3:+1736109 | None:intergenic |
| TTCCTGCAAATCTGAAAAGA+AGG | 0.433348 | 4_3:+1732976 | None:intergenic |
| TTGAATTGAATTGAAGAAAG+AGG | 0.456790 | 4_3:+1737957 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.457624 | 4_3:+1736108 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.460419 | 4_3:+1733738 | None:intergenic |
| ATGAGTGTCTGATGAGAAAT+GGG | 0.462114 | 4_3:+1737774 | None:intergenic |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_3:+1733820 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.464252 | 4_3:+1733739 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_3:+1733834 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_3:+1736204 | None:intergenic |
| ATTGAAGAAAGAGGAAGTTA+GGG | 0.472718 | 4_3:+1737966 | None:intergenic |
| AGACTCATCAAGGTTGGACT+TGG | 0.472965 | 4_3:+1735103 | None:intergenic |
| AATGAGTGTCTGATGAGAAA+TGG | 0.473328 | 4_3:+1737773 | None:intergenic |
| TGGACTTGGTAGATGTAAAT+CGG | 0.473810 | 4_3:+1735117 | None:intergenic |
| AAATCTAAACCTTTGAAATC+GGG | 0.482007 | 4_3:+1737731 | None:intergenic |
| AGACTCGTCATGGTTGGACT+TGG | 0.484402 | 4_3:+1736190 | None:intergenic |
| TAACCCTCTCGTTGGAGAGT+TGG | 0.497538 | 4_3:+1737831 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_3:+1733810 | None:intergenic |
| TTTAGGATGCAAAGAAGTAA+AGG | 0.501385 | 4_3:-1735140 | Msa0623930:intron |
| AATGGGAGGTAGTAGAAGAC+TGG | 0.501501 | 4_3:-1732952 | Msa0623930:CDS |
| CAGCTGATGCAGACTCATCA+AGG | 0.503903 | 4_3:+1735093 | None:intergenic |
| CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4_3:-1733472 | Msa0623930:CDS |
| GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4_3:-1733473 | Msa0623930:CDS |
| CTGTGAGAAAGTGTAAATTT+GGG | 0.521016 | 4_3:+1737686 | None:intergenic |
| AATAACTTGCCTCAAAACTT+GGG | 0.533454 | 4_3:-1732236 | Msa0623930:CDS |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_3:-1733510 | Msa0623930:CDS |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_3:-1735013 | Msa0623930:intron |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_3:-1737592 | Msa0623930:intron |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_3:-1733483 | Msa0623930:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_3:-1733785 | Msa0623930:CDS |
| AAGACTGGGCGTACAACCTA+AGG | 0.553754 | 4_3:-1732937 | Msa0623930:intron |
| GGTCTGATGGCAGTCAATGA+TGG | 0.558320 | 4_3:-1736134 | Msa0623930:CDS |
| AATGAGTTGCGAAACGCGGA+AGG | 0.558566 | 4_3:-1735069 | Msa0623930:CDS |
| CAGCCGATGCAGACTCGTCA+TGG | 0.558934 | 4_3:+1736180 | None:intergenic |
| GGTATTCCACCCGATTTCAA+AGG | 0.560480 | 4_3:-1737740 | Msa0623930:CDS |
| TCTGTTCGTAGCCATTGACT+GGG | 0.562926 | 4_3:-1733012 | Msa0623930:intron |
| TCTTCAATTCAATTCAACAA+TGG | 0.563651 | 4_3:-1737951 | Msa0623930:exon |
| TGAAACATAAGCCCAGTCAA+TGG | 0.568944 | 4_3:+1733001 | None:intergenic |
| TGATGCAGACTCATCAAGGT+TGG | 0.570117 | 4_3:+1735097 | None:intergenic |
| AGACACTCATTTCGAACAAG+AGG | 0.579521 | 4_3:-1737761 | Msa0623930:CDS |
| TCTAAACCTTTGAAATCGGG+TGG | 0.581523 | 4_3:+1737734 | None:intergenic |
| GCCTCAGGAGACTTTACAGT+GGG | 0.582077 | 4_3:+1732201 | None:intergenic |
| TTTGGTAATAACCCTCTCGT+TGG | 0.582765 | 4_3:+1737823 | None:intergenic |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_3:+1733814 | None:intergenic |
| CAACCATGACGAGTCTGCAT+CGG | 0.589195 | 4_3:-1736183 | Msa0623930:CDS |
| CGATGCAGACTCGTCATGGT+TGG | 0.592233 | 4_3:+1736184 | None:intergenic |
| CTGAAATGAGTTGCGAAACG+CGG | 0.599299 | 4_3:-1735073 | Msa0623930:CDS |
| GCATCGGCTGAAATGAATTG+TGG | 0.599724 | 4_3:-1736167 | Msa0623930:CDS |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_3:-1733813 | Msa0623930:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_3:-1733509 | Msa0623930:CDS |
| TGGAACAAGTGAAGGTCTGA+TGG | 0.607490 | 4_3:-1736147 | Msa0623930:CDS |
| ATGAATTGTGGAACAAGTGA+AGG | 0.614158 | 4_3:-1736155 | Msa0623930:CDS |
| TCGGTATAATGTTCGTAGAG+AGG | 0.616329 | 4_3:-1735024 | Msa0623930:CDS |
| TCAGGAGACTTTACAGTGGG+AGG | 0.623602 | 4_3:+1732204 | None:intergenic |
| CCTCTCGTTGGAGAGTTGGG+AGG | 0.627742 | 4_3:+1737835 | None:intergenic |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_3:-1733524 | Msa0623930:CDS |
| CTCCCAACTCTCCAACGAGA+GGG | 0.632798 | 4_3:-1737834 | Msa0623930:CDS |
| ATGGGAGGTAGTAGAAGACT+GGG | 0.636419 | 4_3:-1732951 | Msa0623930:CDS |
| TTTGGATTGAAGTTTGAGTG+CGG | 0.640222 | 4_3:+1737859 | None:intergenic |
| GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4_3:-1733797 | Msa0623930:CDS |
| GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4_3:+1733478 | None:intergenic |
| CCTCCCAACTCTCCAACGAG+AGG | 0.652112 | 4_3:-1737835 | Msa0623930:CDS |
| TCGGTGTAATGTTCGTAGAG+AGG | 0.656453 | 4_3:-1737603 | Msa0623930:CDS |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_3:-1733519 | Msa0623930:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4_3:+1733479 | None:intergenic |
| TGAGTGTCTGATGAGAAATG+GGG | 0.715103 | 4_3:+1737775 | None:intergenic |
| GGTTTGATGGCAGACAACGA+TGG | 0.718774 | 4_3:-1733764 | Msa0623930:CDS |
| GGCCTCAGGAGACTTTACAG+TGG | 0.754910 | 4_3:+1732200 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTAAATTATTAATA+AGG | - | chr4_3:1735856-1735875 | Msa0623930:intron | 0.0% |
| !!! | AGTTATTTTTATAATCTATA+TGG | - | chr4_3:1732781-1732800 | Msa0623930:intron | 10.0% |
| !! | AAATTTATCAAAATAACTTA+TGG | + | chr4_3:1732848-1732867 | None:intergenic | 10.0% |
| !!! | ATAATTTTAAATTCGTAACA+AGG | - | chr4_3:1733481-1733500 | Msa0623930:CDS | 15.0% |
| !! | TCAAAAATTGTATAAGAAAA+TGG | - | chr4_3:1733634-1733653 | Msa0623930:intron | 15.0% |
| !! | CACATATAATAAAATAACTT+CGG | + | chr4_3:1734995-1735014 | None:intergenic | 15.0% |
| !!! | AAAATTTTGACAAAAAAGTT+CGG | - | chr4_3:1735142-1735161 | Msa0623930:intron | 15.0% |
| !! | TTAAATTATTAATAAGGAGA+TGG | - | chr4_3:1735862-1735881 | Msa0623930:intron | 15.0% |
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_3:1736512-1736531 | Msa0623930:intron | 15.0% |
| !! | TGTCCTTTATATTATTTAAA+CGG | - | chr4_3:1736593-1736612 | Msa0623930:intron | 15.0% |
| !!! | CAAATTTTGACAAAAATGTT+CGG | - | chr4_3:1732563-1732582 | Msa0623930:intron | 20.0% |
| !! | GTATATTTCTTCATAACATA+CGG | + | chr4_3:1733369-1733388 | None:intergenic | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_3:1733766-1733785 | None:intergenic | 20.0% |
| !!! | ATTGGTTTATTTTTGAACAA+GGG | - | chr4_3:1734103-1734122 | Msa0623930:intron | 20.0% |
| !!! | TATTTTGCGATTATGAAAAA+TGG | + | chr4_3:1734302-1734321 | None:intergenic | 20.0% |
| !!! | GATAGATATTTGCTTTTAAA+AGG | - | chr4_3:1734372-1734391 | Msa0623930:intron | 20.0% |
| !!! | TTAATTTTGAATTCCTAACA+AGG | - | chr4_3:1734592-1734611 | Msa0623930:intron | 20.0% |
| !! | TAAGAAATTGTAAACGAAAA+TGG | - | chr4_3:1734717-1734736 | Msa0623930:intron | 20.0% |
| !!! | TGATAGATATTTGTTTCTTT+TGG | - | chr4_3:1735581-1735600 | Msa0623930:intron | 20.0% |
| !!! | GATAGATATTTGTTTCTTTT+GGG | - | chr4_3:1735582-1735601 | Msa0623930:intron | 20.0% |
| !!! | ATAGATATTTGTTTCTTTTG+GGG | - | chr4_3:1735583-1735602 | Msa0623930:intron | 20.0% |
| !! | ACTATATATTGTTTCAGTTT+CGG | - | chr4_3:1735638-1735657 | Msa0623930:intron | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_3:1735751-1735770 | None:intergenic | 20.0% |
| !! | CATAAAGAATGATATAACTT+TGG | - | chr4_3:1735749-1735768 | Msa0623930:intron | 20.0% |
| !!! | ATAACTTTGGAAATTTAAAG+TGG | - | chr4_3:1735762-1735781 | Msa0623930:intron | 20.0% |
| !!! | TAACTTTGGAAATTTAAAGT+GGG | - | chr4_3:1735763-1735782 | Msa0623930:intron | 20.0% |
| !! | AATTGTATAAGAAAATAGCA+AGG | - | chr4_3:1736012-1736031 | Msa0623930:intron | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_3:1733766-1733785 | None:intergenic | 20.0% |
| !! | CACATAAAACAAAATAATGT+CGG | + | chr4_3:1736279-1736298 | None:intergenic | 20.0% |
| !!! | ACAAATACAAGTAACTTTTT+AGG | - | chr4_3:1736311-1736330 | Msa0623930:intron | 20.0% |
| !!! | CTTGAAAATAAAGTCTTATT+TGG | - | chr4_3:1736547-1736566 | Msa0623930:intron | 20.0% |
| !! | TATAAAGGACAATTTAGTAT+AGG | + | chr4_3:1736584-1736603 | None:intergenic | 20.0% |
| !! | AGACCGTTTAAATAATATAA+AGG | + | chr4_3:1736599-1736618 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTTTTTTTTGTTG+AGG | + | chr4_3:1737279-1737298 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAAAAACCTA+AGG | - | chr4_3:1737279-1737298 | Msa0623930:intron | 20.0% |
| !! | AACAATTCAAACAAGAATTA+AGG | - | chr4_3:1737715-1737734 | Msa0623930:CDS | 20.0% |
| !! | CCAACACAATTATTAAAAAA+GGG | + | chr4_3:1737753-1737772 | None:intergenic | 20.0% |
| !! | ACCAACACAATTATTAAAAA+AGG | + | chr4_3:1737754-1737773 | None:intergenic | 20.0% |
| ! | TTGAATTGAATTGAAGAAAG+AGG | + | chr4_3:1732231-1732250 | None:intergenic | 25.0% |
| ! | TCTTCAATTCAATTCAACAA+TGG | - | chr4_3:1732234-1732253 | Msa0623930:CDS | 25.0% |
| ! | TCGACATAACAATGAAATAA+TGG | - | chr4_3:1732303-1732322 | Msa0623930:intron | 25.0% |
| !!! | TTTTGGTTTTTTCTCTGATT+TGG | + | chr4_3:1732383-1732402 | None:intergenic | 25.0% |
| !!! | AAATCTAAACCTTTGAAATC+GGG | + | chr4_3:1732457-1732476 | None:intergenic | 25.0% |
| !!! | GAAATCTAAACCTTTGAAAT+CGG | + | chr4_3:1732458-1732477 | None:intergenic | 25.0% |
| !! | CGAACATTTTTGTCAAAATT+TGG | + | chr4_3:1732565-1732584 | None:intergenic | 25.0% |
| ! | TTTAAATCAACATGTTGTAC+TGG | - | chr4_3:1732643-1732662 | Msa0623930:intron | 25.0% |
| !!! | TAAGTTTTGTGATTCTGTTT+GGG | + | chr4_3:1732872-1732891 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGATTCTGTT+TGG | + | chr4_3:1732873-1732892 | None:intergenic | 25.0% |
| !!! | GATGGATATTTGCTTTTAAA+AGG | - | chr4_3:1733182-1733201 | Msa0623930:intron | 25.0% |
| !!! | TATATCAGTTAAGCTTTAGA+TGG | + | chr4_3:1733330-1733349 | None:intergenic | 25.0% |
| ! | ACAACTTTGCAAATTTAAAG+TGG | - | chr4_3:1733387-1733406 | Msa0623930:intron | 25.0% |
| !! | AATTTAAAGTGGAGATTTGA+TGG | - | chr4_3:1733398-1733417 | Msa0623930:intron | 25.0% |
| ! | ATTGAAGTAAAAATGAAAGC+AGG | - | chr4_3:1733701-1733720 | Msa0623930:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+GGG | + | chr4_3:1733758-1733777 | None:intergenic | 25.0% |
| ! | TTATCATTACATATGGTGTT+AGG | + | chr4_3:1733759-1733778 | None:intergenic | 25.0% |
| ! | GGACATAAACAAAATAATGT+CGG | + | chr4_3:1733909-1733928 | None:intergenic | 25.0% |
| ! | CAAATACAACTAACTTCTTT+AGG | - | chr4_3:1733941-1733960 | Msa0623930:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_3:1733958-1733977 | Msa0623930:intron | 25.0% |
| !!! | AAGATAATGTGTAAGTTGAT+TGG | - | chr4_3:1734085-1734104 | Msa0623930:intron | 25.0% |
| !!! | GATTGGTTTATTTTTGAACA+AGG | - | chr4_3:1734102-1734121 | Msa0623930:intron | 25.0% |
| !!! | AGATATTTGCTTTTAAAAGG+AGG | - | chr4_3:1734375-1734394 | Msa0623930:intron | 25.0% |
| !!! | TTCTTTTGGAAATAGTATTC+AGG | - | chr4_3:1734410-1734429 | Msa0623930:intron | 25.0% |
| ! | ATTTCAGTTCATATTAGTCA+AGG | - | chr4_3:1734467-1734486 | Msa0623930:intron | 25.0% |
| ! | TATATCAGTTAAGCATTAGA+TGG | + | chr4_3:1734518-1734537 | None:intergenic | 25.0% |
| ! | GAGAAGATAAAAAACAAACT+TGG | - | chr4_3:1734561-1734580 | Msa0623930:intron | 25.0% |
| ! | GAGAAGATTATCATTACATA+CGG | + | chr4_3:1734853-1734872 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr4_3:1735341-1735360 | None:intergenic | 25.0% |
| ! | AAACAAATATCTATCATTGC+AGG | + | chr4_3:1735577-1735596 | None:intergenic | 25.0% |
| ! | ATATCATTCTTTATGGCATA+AGG | + | chr4_3:1735744-1735763 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAAAGTG+GGG | - | chr4_3:1735764-1735783 | Msa0623930:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+AGG | + | chr4_3:1733758-1733777 | None:intergenic | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_3:1733958-1733977 | Msa0623930:intron | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_3:1736473-1736492 | Msa0623930:intron | 25.0% |
| ! | ATTAACCCGTAATAATTGTA+TGG | + | chr4_3:1736810-1736829 | None:intergenic | 25.0% |
| !!! | ATGTTTTTATTAATTCCACC+TGG | - | chr4_3:1736983-1737002 | Msa0623930:intron | 25.0% |
| ! | AATGTGAAGATACATAAACA+GGG | + | chr4_3:1737086-1737105 | None:intergenic | 25.0% |
| ! | AAATGTGAAGATACATAAAC+AGG | + | chr4_3:1737087-1737106 | None:intergenic | 25.0% |
| ! | TATATGCAAAAGTTGTTAGT+TGG | - | chr4_3:1737303-1737322 | Msa0623930:intron | 25.0% |
| ! | ATATGCAAAAGTTGTTAGTT+GGG | - | chr4_3:1737304-1737323 | Msa0623930:intron | 25.0% |
| ! | ACAAAATTAAGAAGTTGAAG+AGG | - | chr4_3:1737462-1737481 | Msa0623930:intron | 25.0% |
| ! | CAAAATTAAGAAGTTGAAGA+GGG | - | chr4_3:1737463-1737482 | Msa0623930:intron | 25.0% |
| ! | ATCAAAAGCTTAAACTAACT+TGG | + | chr4_3:1737589-1737608 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTAATAATTGTGT+TGG | - | chr4_3:1737750-1737769 | Msa0623930:CDS | 25.0% |
| !!! | TTTATCGCTTTAAGAGTTTA+CGG | - | chr4_3:1737811-1737830 | Msa0623930:CDS | 25.0% |
| ATTGAAGAAAGAGGAAGTTA+GGG | + | chr4_3:1732222-1732241 | None:intergenic | 30.0% | |
| AATTGAAGAAAGAGGAAGTT+AGG | + | chr4_3:1732223-1732242 | None:intergenic | 30.0% | |
| ! | CTGTGAGAAAGTGTAAATTT+GGG | + | chr4_3:1732502-1732521 | None:intergenic | 30.0% |
| ! | TCTGTGAGAAAGTGTAAATT+TGG | + | chr4_3:1732503-1732522 | None:intergenic | 30.0% |
| ! | TGTCAAAATTTGGTTTCTTC+CGG | + | chr4_3:1732555-1732574 | None:intergenic | 30.0% |
| TAGCATTAAGGTATGTGTAT+AGG | - | chr4_3:1732605-1732624 | Msa0623930:intron | 30.0% | |
| AGCATTAAGGTATGTGTATA+GGG | - | chr4_3:1732606-1732625 | Msa0623930:intron | 30.0% | |
| GTTAGTTCAAAAGCTCAATT+AGG | - | chr4_3:1732893-1732912 | Msa0623930:intron | 30.0% | |
| AAAAACAAGCCAATCCAAAT+GGG | + | chr4_3:1732940-1732959 | None:intergenic | 30.0% | |
| CAATCCAAATGAATTCATAG+TGG | - | chr4_3:1733140-1733159 | Msa0623930:intron | 30.0% | |
| AAGCAAATATCCATCATTGT+AGG | + | chr4_3:1733177-1733196 | None:intergenic | 30.0% | |
| GTTTCAGTTCATATTAGTCA+AGG | - | chr4_3:1733279-1733298 | Msa0623930:intron | 30.0% | |
| ! | TGGAGATTTGATGGATATAT+TGG | - | chr4_3:1733407-1733426 | Msa0623930:intron | 30.0% |
| TTAAATTCGTAACAAGGAGA+TGG | - | chr4_3:1733487-1733506 | Msa0623930:CDS | 30.0% | |
| AATTGTATAAGAAAATGGCG+AGG | - | chr4_3:1733639-1733658 | Msa0623930:intron | 30.0% | |
| ! | TTGTATTTGTTAGCAAGTGT+TGG | + | chr4_3:1733930-1733949 | None:intergenic | 30.0% |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_3:1734079-1734098 | None:intergenic | 30.0% |
| TATGATTCATAAGCTTGTCA+AGG | - | chr4_3:1734187-1734206 | Msa0623930:intron | 30.0% | |
| AAATATCTATCATTGCAGAC+TGG | + | chr4_3:1734363-1734382 | None:intergenic | 30.0% | |
| AATTGTAAACGAAAATGGTG+AGG | - | chr4_3:1734722-1734741 | Msa0623930:intron | 30.0% | |
| ATTGTAAACGAAAATGGTGA+GGG | - | chr4_3:1734723-1734742 | Msa0623930:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+GGG | + | chr4_3:1734882-1734901 | None:intergenic | 30.0% |
| !! | ACTATTACACTGCTTTAAGA+AGG | + | chr4_3:1734883-1734902 | None:intergenic | 30.0% |
| CAAATACAAGCAACTTCTTT+AGG | - | chr4_3:1735028-1735047 | Msa0623930:CDS | 30.0% | |
| ! | TTTAGGATGCAAAGAAGTAA+AGG | - | chr4_3:1735045-1735064 | Msa0623930:CDS | 30.0% |
| TAGCATTAAGGTATGTTTAG+AGG | - | chr4_3:1735184-1735203 | Msa0623930:intron | 30.0% | |
| AGCATTAAGGTATGTTTAGA+GGG | - | chr4_3:1735185-1735204 | Msa0623930:intron | 30.0% | |
| AAAAGGATCAATGTTCTGTT+TGG | + | chr4_3:1735324-1735343 | None:intergenic | 30.0% | |
| ! | AAACAGAACATTGATCCTTT+TGG | - | chr4_3:1735323-1735342 | Msa0623930:intron | 30.0% |
| !! | TATATCAGCTAAGCTTTAGA+TGG | + | chr4_3:1735705-1735724 | None:intergenic | 30.0% |
| ! | CTCTATAACATTTGCTACAT+AGG | + | chr4_3:1735892-1735911 | None:intergenic | 30.0% |
| AGAGAAGATAGAAACAAACT+AGG | - | chr4_3:1735910-1735929 | Msa0623930:intron | 30.0% | |
| GAAAATAGCAAGGAAAATGT+TGG | - | chr4_3:1736022-1736041 | Msa0623930:intron | 30.0% | |
| GTTGAAGTAAAAATGAAAGC+AGG | - | chr4_3:1736069-1736088 | Msa0623930:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+AGG | + | chr4_3:1734882-1734901 | None:intergenic | 30.0% |
| AAATAATGTCGGTCATAACA+TGG | + | chr4_3:1736268-1736287 | None:intergenic | 30.0% | |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_3:1734079-1734098 | None:intergenic | 30.0% |
| AAGATAATGTGTAAGTAGAC+TGG | - | chr4_3:1736455-1736474 | Msa0623930:intron | 30.0% | |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_3:1736472-1736491 | Msa0623930:intron | 30.0% |
| !!! | GTTTATTTTTGAACAAGGGA+AGG | - | chr4_3:1734107-1734126 | Msa0623930:intron | 30.0% |
| TTTCAACTCATATCAGTTGT+AGG | - | chr4_3:1736622-1736641 | Msa0623930:intron | 30.0% | |
| AGCAACATTGGAAAAACAAA+AGG | + | chr4_3:1736787-1736806 | None:intergenic | 30.0% | |
| ATAATTGTATGGAGCAACAT+TGG | + | chr4_3:1736799-1736818 | None:intergenic | 30.0% | |
| GTTGCTCCATACAATTATTA+CGG | - | chr4_3:1736801-1736820 | Msa0623930:intron | 30.0% | |
| TTGCTCCATACAATTATTAC+GGG | - | chr4_3:1736802-1736821 | Msa0623930:intron | 30.0% | |
| !! | TTACGGGTTAATCATGATTT+TGG | - | chr4_3:1736818-1736837 | Msa0623930:intron | 30.0% |
| ! | CGAATTGGCTTAATATTACA+GGG | + | chr4_3:1736845-1736864 | None:intergenic | 30.0% |
| CCTGTAATATTAAGCCAATT+CGG | - | chr4_3:1736843-1736862 | Msa0623930:intron | 30.0% | |
| ! | ATATTAAGCCAATTCGGTTT+TGG | - | chr4_3:1736849-1736868 | Msa0623930:intron | 30.0% |
| ACAATGACAGATAAATGAAG+GGG | + | chr4_3:1736918-1736937 | None:intergenic | 30.0% | |
| CACAATGACAGATAAATGAA+GGG | + | chr4_3:1736919-1736938 | None:intergenic | 30.0% | |
| TCACAATGACAGATAAATGA+AGG | + | chr4_3:1736920-1736939 | None:intergenic | 30.0% | |
| TCATTGTGAATGTGTTAAAG+TGG | - | chr4_3:1736931-1736950 | Msa0623930:intron | 30.0% | |
| AAAATGAAGGAGAAGATGAA+TGG | + | chr4_3:1737041-1737060 | None:intergenic | 30.0% | |
| TTTCAGATTTGCAGGAAAAA+TGG | - | chr4_3:1737215-1737234 | Msa0623930:intron | 30.0% | |
| TTCAGATTTGCAGGAAAAAT+GGG | - | chr4_3:1737216-1737235 | Msa0623930:intron | 30.0% | |
| ! | TTTTGTTGAGGTATAACCTT+AGG | + | chr4_3:1737267-1737286 | None:intergenic | 30.0% |
| ! | CAACTTTTGCATATAACCTT+AGG | + | chr4_3:1737298-1737317 | None:intergenic | 30.0% |
| ACAATTCCATCCAATATTGA+TGG | - | chr4_3:1737358-1737377 | Msa0623930:intron | 30.0% | |
| !! | AAGCACTTTAGGAATGATTT+TGG | - | chr4_3:1737415-1737434 | Msa0623930:intron | 30.0% |
| ! | AAATAACTTGCCTCAAAACT+TGG | - | chr4_3:1737948-1737967 | Msa0623930:exon | 30.0% |
| ! | AATAACTTGCCTCAAAACTT+GGG | - | chr4_3:1737949-1737968 | Msa0623930:exon | 30.0% |
| TTTGGATTGAAGTTTGAGTG+CGG | + | chr4_3:1732329-1732348 | None:intergenic | 35.0% | |
| ! | AGAAATGGGGTTTCAGTTTT+TGG | + | chr4_3:1732400-1732419 | None:intergenic | 35.0% |
| ATGAGTGTCTGATGAGAAAT+GGG | + | chr4_3:1732414-1732433 | None:intergenic | 35.0% | |
| AATGAGTGTCTGATGAGAAA+TGG | + | chr4_3:1732415-1732434 | None:intergenic | 35.0% | |
| !! | GTGAAGTAGGAGTTTTATGA+TGG | + | chr4_3:1732480-1732499 | None:intergenic | 35.0% |
| AGTGTAAATTTGGGTGAAGT+AGG | + | chr4_3:1732493-1732512 | None:intergenic | 35.0% | |
| !! | TTCTCACAGATTAGCTTCAT+TGG | - | chr4_3:1732513-1732532 | Msa0623930:intron | 35.0% |
| ! | TGGTTACATTTTGCCAAAAC+CGG | - | chr4_3:1732533-1732552 | Msa0623930:intron | 35.0% |
| !! | AATTTGGTTTCTTCCGGTTT+TGG | + | chr4_3:1732549-1732568 | None:intergenic | 35.0% |
| AAATGGGTCAATGTTCTGTT+TGG | + | chr4_3:1732924-1732943 | None:intergenic | 35.0% | |
| AAACAGAACATTGACCCATT+TGG | - | chr4_3:1732923-1732942 | Msa0623930:intron | 35.0% | |
| CAAAAACAAGCCAATCCAAA+TGG | + | chr4_3:1732941-1732960 | None:intergenic | 35.0% | |
| CATGATTCATAAGCTTGTCA+AGG | - | chr4_3:1733003-1733022 | Msa0623930:CDS | 35.0% | |
| ACTGCCACTATGAATTCATT+TGG | + | chr4_3:1733147-1733166 | None:intergenic | 35.0% | |
| ! | CTTTTGTGGTAATAGTGTTC+AGG | - | chr4_3:1733222-1733241 | Msa0623930:intron | 35.0% |
| CTATTACACTGCTTTACGAA+AGG | + | chr4_3:1733795-1733814 | None:intergenic | 35.0% | |
| ATGAATTGTGGAACAAGTGA+AGG | - | chr4_3:1734030-1734049 | Msa0623930:intron | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_3:1734080-1734099 | None:intergenic | 35.0% |
| ACAAGGGAAGAAAAACTGAA+TGG | - | chr4_3:1734119-1734138 | Msa0623930:intron | 35.0% | |
| CAAGGGAAGAAAAACTGAAT+GGG | - | chr4_3:1734120-1734139 | Msa0623930:intron | 35.0% | |
| ! | AACTATGGACTTGTTTGGAT+TGG | + | chr4_3:1734327-1734346 | None:intergenic | 35.0% |
| AATCCAAACAAGTCCATAGT+TGG | - | chr4_3:1734326-1734345 | Msa0623930:intron | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_3:1734473-1734492 | Msa0623930:intron | 35.0% | |
| TTGAATTCCTAACAAGGAGA+TGG | - | chr4_3:1734598-1734617 | Msa0623930:intron | 35.0% | |
| GAAAATGGTGAGGGAAATAT+TGG | - | chr4_3:1734732-1734751 | Msa0623930:intron | 35.0% | |
| ! | TGGACTTGGTAGATGTAAAT+CGG | + | chr4_3:1735071-1735090 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTCTT+TGG | + | chr4_3:1735273-1735292 | None:intergenic | 35.0% |
| ! | GAACATTGATCCTTTTGGAT+TGG | - | chr4_3:1735328-1735347 | Msa0623930:intron | 35.0% |
| GTTTCGGTTCATATTAGTCA+AGG | - | chr4_3:1735654-1735673 | Msa0623930:intron | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_3:1734473-1734492 | Msa0623930:intron | 35.0% | |
| GGGGATTTGATGAATACATT+TGG | - | chr4_3:1735783-1735802 | Msa0623930:intron | 35.0% | |
| ACTCAGCATATAAACTTGAC+AGG | + | chr4_3:1733842-1733861 | None:intergenic | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_3:1734080-1734099 | None:intergenic | 35.0% |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_3:1736730-1736749 | Msa0623930:intron | 35.0% | |
| ! | CCGAATTGGCTTAATATTAC+AGG | + | chr4_3:1736846-1736865 | None:intergenic | 35.0% |
| GATAAATGAAGGGGAAAAAG+TGG | + | chr4_3:1736909-1736928 | None:intergenic | 35.0% | |
| ! | GTTAAAGTGGCATACTGATT+TGG | - | chr4_3:1736944-1736963 | Msa0623930:intron | 35.0% |
| GAGATGCGAAGAAAAAATGA+AGG | + | chr4_3:1737054-1737073 | None:intergenic | 35.0% | |
| TCATCTTCTACTGAATCGTA+TGG | - | chr4_3:1737135-1737154 | Msa0623930:intron | 35.0% | |
| ATTCCATCCAATATTGATGG+TGG | - | chr4_3:1737361-1737380 | Msa0623930:intron | 35.0% | |
| TTGCAACATACGTGAAATGA+AGG | - | chr4_3:1737384-1737403 | Msa0623930:intron | 35.0% | |
| !!! | AGGTTTTTCTGAAGCACTTT+AGG | - | chr4_3:1737404-1737423 | Msa0623930:intron | 35.0% |
| AACGAAGAACTTACTCATGA+TGG | - | chr4_3:1737487-1737506 | Msa0623930:intron | 35.0% | |
| ! | AGAGTTTTGCCATATACCTA+GGG | + | chr4_3:1737881-1737900 | None:intergenic | 35.0% |
| ! | AAGAGTTTTGCCATATACCT+AGG | + | chr4_3:1737882-1737901 | None:intergenic | 35.0% |
| AGGTATATGGCAAAACTCTT+CGG | - | chr4_3:1737882-1737901 | Msa0623930:CDS | 35.0% | |
| GACGAAAAATCAGAGAAACT+CGG | + | chr4_3:1737909-1737928 | None:intergenic | 35.0% | |
| !! | CTCTGATTTTTCGTCGTTTT+AGG | - | chr4_3:1737914-1737933 | Msa0623930:CDS | 35.0% |
| ! | AATTCTGTTCCCAAGTTTTG+AGG | + | chr4_3:1737961-1737980 | None:intergenic | 35.0% |
| ! | TTTGGTAATAACCCTCTCGT+TGG | + | chr4_3:1732365-1732384 | None:intergenic | 40.0% |
| TGAGTGTCTGATGAGAAATG+GGG | + | chr4_3:1732413-1732432 | None:intergenic | 40.0% | |
| AGACACTCATTTCGAACAAG+AGG | - | chr4_3:1732424-1732443 | Msa0623930:intron | 40.0% | |
| !! | TCTAAACCTTTGAAATCGGG+TGG | + | chr4_3:1732454-1732473 | None:intergenic | 40.0% |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_3:1732593-1732612 | Msa0623930:intron | 40.0% | |
| !! | ACATGTTGTACTGGCTTGTT+TGG | - | chr4_3:1732652-1732671 | Msa0623930:intron | 40.0% |
| GAACATTGACCCATTTGGAT+TGG | - | chr4_3:1732928-1732947 | Msa0623930:intron | 40.0% | |
| AGTTCATCGACCTACAATGA+TGG | - | chr4_3:1733164-1733183 | Msa0623930:intron | 40.0% | |
| GTTCATATTAGTCAAGGACC+TGG | - | chr4_3:1733285-1733304 | Msa0623930:intron | 40.0% | |
| CTCATCAGAGAAAAACATCC+AGG | + | chr4_3:1733306-1733325 | None:intergenic | 40.0% | |
| GAAAATGGCGAGGAAAATGT+TGG | - | chr4_3:1733649-1733668 | Msa0623930:intron | 40.0% | |
| AAATAATGTCGGTCAGAACG+TGG | + | chr4_3:1733898-1733917 | None:intergenic | 40.0% | |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_3:1733984-1734003 | None:intergenic | 40.0% | |
| AAGTCTTCCATCTCCTTGTT+AGG | + | chr4_3:1733497-1733516 | None:intergenic | 40.0% | |
| ! | AGAACTCCATTGGAGTGTTA+GGG | + | chr4_3:1734821-1734840 | None:intergenic | 40.0% |
| GTGTTAAGACAGAACTCCAT+TGG | + | chr4_3:1734831-1734850 | None:intergenic | 40.0% | |
| ACTCAGCAGATAAACTTGAC+AGG | + | chr4_3:1734929-1734948 | None:intergenic | 40.0% | |
| TCGGTATAATGTTCGTAGAG+AGG | - | chr4_3:1735161-1735180 | Msa0623930:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_3:1732593-1732612 | Msa0623930:intron | 40.0% | |
| TAGCTTATGCGAAGCAACTT+AGG | - | chr4_3:1735360-1735379 | Msa0623930:intron | 40.0% | |
| CAATCCAAACGAGTTCATAG+TGG | - | chr4_3:1735540-1735559 | Msa0623930:intron | 40.0% | |
| !! | CTTTTGGGGAAATAGTGTTC+TGG | - | chr4_3:1735597-1735616 | Msa0623930:intron | 40.0% |
| ! | ATGGTGTTAAGGCAGTGTTA+GGG | + | chr4_3:1736115-1736134 | None:intergenic | 40.0% |
| ! | TATGGTGTTAAGGCAGTGTT+AGG | + | chr4_3:1736116-1736135 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_3:1733984-1734003 | None:intergenic | 40.0% | |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_3:1736400-1736419 | Msa0623930:intron | 40.0% | |
| CTGTGGGCAAATAAGGTAAA+TGG | - | chr4_3:1736729-1736748 | Msa0623930:intron | 40.0% | |
| TATACGGACCAAAACCGAAT+TGG | + | chr4_3:1736860-1736879 | None:intergenic | 40.0% | |
| CTTCTTCTTCCTCTTGGTTT+AGG | - | chr4_3:1737010-1737029 | Msa0623930:intron | 40.0% | |
| ATGGTCAAACCTAAACCAAG+AGG | + | chr4_3:1737022-1737041 | None:intergenic | 40.0% | |
| TGAAACATAAGCCCAGTCAA+TGG | + | chr4_3:1737187-1737206 | None:intergenic | 40.0% | |
| AGATTTGCAGGAAAAATGGG+AGG | - | chr4_3:1737219-1737238 | Msa0623930:intron | 40.0% | |
| CAACCACCATCAATATTGGA+TGG | + | chr4_3:1737367-1737386 | None:intergenic | 40.0% | |
| GTTGCAACCACCATCAATAT+TGG | + | chr4_3:1737371-1737390 | None:intergenic | 40.0% | |
| !! | TGATGGCTTTGATGATGTCT+TGG | - | chr4_3:1737504-1737523 | Msa0623930:intron | 40.0% |
| GGTATATGGCAAAACTCTTC+GGG | - | chr4_3:1737883-1737902 | Msa0623930:CDS | 40.0% | |
| GGTATTCCACCCGATTTCAA+AGG | - | chr4_3:1732445-1732464 | Msa0623930:intron | 45.0% | |
| TCGGTGTAATGTTCGTAGAG+AGG | - | chr4_3:1732582-1732601 | Msa0623930:intron | 45.0% | |
| ! | CTCGCTCAGTGTTTCTTTTG+TGG | - | chr4_3:1733208-1733227 | Msa0623930:intron | 45.0% |
| ! | ATGGTGTTAGGGCAGTGTTA+GGG | + | chr4_3:1733747-1733766 | None:intergenic | 45.0% |
| ! | TATGGTGTTAGGGCAGTGTT+AGG | + | chr4_3:1733748-1733767 | None:intergenic | 45.0% |
| !! | GCATCGGCTGAAATGAATTG+TGG | - | chr4_3:1734018-1734037 | Msa0623930:intron | 45.0% |
| TGGAACAAGTGAAGGTCTGA+TGG | - | chr4_3:1734038-1734057 | Msa0623930:intron | 45.0% | |
| ! | CTGCCAACTATGGACTTGTT+TGG | + | chr4_3:1734332-1734351 | None:intergenic | 45.0% |
| GGTCAATGAACTGCCAACTA+TGG | + | chr4_3:1734342-1734361 | None:intergenic | 45.0% | |
| ! | GGCTCACTCAGTGTTTCTTT+TGG | - | chr4_3:1734396-1734415 | Msa0623930:intron | 45.0% |
| AACTGACCCTAACACTCCAA+TGG | - | chr4_3:1734812-1734831 | Msa0623930:intron | 45.0% | |
| ! | CAGAACTCCATTGGAGTGTT+AGG | + | chr4_3:1734822-1734841 | None:intergenic | 45.0% |
| AGACTCATCAAGGTTGGACT+TGG | + | chr4_3:1735085-1735104 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAAGGT+TGG | + | chr4_3:1735091-1735110 | None:intergenic | 45.0% | |
| CTGAAATGAGTTGCGAAACG+CGG | - | chr4_3:1735112-1735131 | Msa0623930:CDS | 45.0% | |
| ACTGCCACTATGAACTCGTT+TGG | + | chr4_3:1735547-1735566 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_3:1736368-1736387 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_3:1736372-1736391 | Msa0623930:intron | 45.0% | |
| !! | GCATCGGCTGAAATGAATTG+CGG | - | chr4_3:1734018-1734037 | Msa0623930:intron | 45.0% |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_3:1736408-1736427 | Msa0623930:intron | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_3:1736709-1736728 | None:intergenic | 45.0% |
| CAATGCTTGTGGACTTCTGT+GGG | - | chr4_3:1736713-1736732 | Msa0623930:intron | 45.0% | |
| TGGACTTCTGTGGGCAAATA+AGG | - | chr4_3:1736722-1736741 | Msa0623930:intron | 45.0% | |
| AGAGGAAGAAGAAGAATGCC+AGG | + | chr4_3:1737004-1737023 | None:intergenic | 45.0% | |
| GGCATTCTTCTTCTTCCTCT+TGG | - | chr4_3:1737004-1737023 | Msa0623930:intron | 45.0% | |
| TTCTGTTCGTAGCCATTGAC+TGG | - | chr4_3:1737172-1737191 | Msa0623930:intron | 45.0% | |
| ! | TCTGTTCGTAGCCATTGACT+GGG | - | chr4_3:1737173-1737192 | Msa0623930:intron | 45.0% |
| AATGGGAGGTAGTAGAAGAC+TGG | - | chr4_3:1737233-1737252 | Msa0623930:intron | 45.0% | |
| ATGGGAGGTAGTAGAAGACT+GGG | - | chr4_3:1737234-1737253 | Msa0623930:intron | 45.0% | |
| !! | AGTTTACGGTGTTACACCCT+AGG | - | chr4_3:1737825-1737844 | Msa0623930:CDS | 45.0% |
| TAGGACATATCATGCGCCTA+GGG | + | chr4_3:1737844-1737863 | None:intergenic | 45.0% | |
| CATGATATGTCCTAGGTGCA+TGG | - | chr4_3:1737850-1737869 | Msa0623930:CDS | 45.0% | |
| ATGGCTATGCCCTAGGTATA+TGG | - | chr4_3:1737869-1737888 | Msa0623930:CDS | 45.0% | |
| !!! | TCTAAATTTTTTATTTTATA+CGG | + | chr4_3:1736876-1736895 | None:intergenic | 5.0% |
| AACCCTCTCGTTGGAGAGTT+GGG | + | chr4_3:1732356-1732375 | None:intergenic | 50.0% | |
| TAACCCTCTCGTTGGAGAGT+TGG | + | chr4_3:1732357-1732376 | None:intergenic | 50.0% | |
| AGACTCGTCATGGTTGGACT+TGG | + | chr4_3:1733998-1734017 | None:intergenic | 50.0% | |
| CAACCATGACGAGTCTGCAT+CGG | - | chr4_3:1734002-1734021 | Msa0623930:intron | 50.0% | |
| GGTCTGATGGCAGTCAATGA+TGG | - | chr4_3:1734051-1734070 | Msa0623930:intron | 50.0% | |
| CAGCTGATGCAGACTCATCA+AGG | + | chr4_3:1735095-1735114 | None:intergenic | 50.0% | |
| AATGAGTTGCGAAACGCGGA+AGG | - | chr4_3:1735116-1735135 | Msa0623930:CDS | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_3:1736374-1736393 | None:intergenic | 50.0% | |
| ! | GGTTTGATGGCAGACAACGA+TGG | - | chr4_3:1736421-1736440 | Msa0623930:intron | 50.0% |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_3:1736661-1736680 | Msa0623930:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_3:1736702-1736721 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_3:1736702-1736721 | Msa0623930:intron | 50.0% | |
| ! | GAAGTCCACAAGCATTGCAG+AGG | + | chr4_3:1736710-1736729 | None:intergenic | 50.0% |
| GCAATGCTTGTGGACTTCTG+TGG | - | chr4_3:1736712-1736731 | Msa0623930:intron | 50.0% | |
| GGAAGAAGAAGAATGCCAGG+TGG | + | chr4_3:1737001-1737020 | None:intergenic | 50.0% | |
| AAGACTGGGCGTACAACCTA+AGG | - | chr4_3:1737248-1737267 | Msa0623930:intron | 50.0% | |
| CTAGGACATATCATGCGCCT+AGG | + | chr4_3:1737845-1737864 | None:intergenic | 50.0% | |
| CTAGGCGCATGATATGTCCT+AGG | - | chr4_3:1737843-1737862 | Msa0623930:CDS | 50.0% | |
| GTTGGAGAGTTGGGAGGCTT+TGG | + | chr4_3:1732347-1732366 | None:intergenic | 55.0% | |
| CTCCCAACTCTCCAACGAGA+GGG | - | chr4_3:1732351-1732370 | Msa0623930:intron | 55.0% | |
| CGATGCAGACTCGTCATGGT+TGG | + | chr4_3:1734004-1734023 | None:intergenic | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_3:1736378-1736397 | None:intergenic | 55.0% | |
| TAGGGCATAGCCATGCACCT+AGG | + | chr4_3:1737863-1737882 | None:intergenic | 55.0% | |
| TAGGTGCATGGCTATGCCCT+AGG | - | chr4_3:1737862-1737881 | Msa0623930:CDS | 55.0% | |
| CCTCTCGTTGGAGAGTTGGG+AGG | + | chr4_3:1732353-1732372 | None:intergenic | 60.0% | |
| CCTCCCAACTCTCCAACGAG+AGG | - | chr4_3:1732350-1732369 | Msa0623930:intron | 60.0% | |
| CAGCCGATGCAGACTCGTCA+TGG | + | chr4_3:1734008-1734027 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_3:1736675-1736694 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_3:1736675-1736694 | Msa0623930:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_3:1736676-1736695 | Msa0623930:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_3:1736693-1736712 | None:intergenic | 60.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_3:1736666-1736685 | Msa0623930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 1732214 | 1737993 | 1732214 | ID=Msa0623930;Name=Msa0623930 |
| chr4_3 | mRNA | 1732214 | 1737993 | 1732214 | ID=Msa0623930-mRNA-1;Parent=Msa0623930;Name=Msa0623930-mRNA-1;_AED=0.09;_eAED=0.12;_QI=39|0.66|0.71|0.85|1|1|7|0|339 |
| chr4_3 | exon | 1732214 | 1732271 | 1732214 | ID=Msa0623930-mRNA-1:exon:484;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1732938 | 1733023 | 1732938 | ID=Msa0623930-mRNA-1:exon:483;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1733464 | 1733569 | 1733464 | ID=Msa0623930-mRNA-1:exon:482;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1733743 | 1733874 | 1733743 | ID=Msa0623930-mRNA-1:exon:481;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1735014 | 1735157 | 1735014 | ID=Msa0623930-mRNA-1:exon:480;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1736113 | 1736244 | 1736113 | ID=Msa0623930-mRNA-1:exon:479;Parent=Msa0623930-mRNA-1 |
| chr4_3 | exon | 1737593 | 1737993 | 1737593 | ID=Msa0623930-mRNA-1:exon:478;Parent=Msa0623930-mRNA-1 |
| chr4_3 | five_prime_UTR | 1737955 | 1737993 | 1737955 | ID=Msa0623930-mRNA-1:five_prime_utr;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1737593 | 1737954 | 1737593 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1736113 | 1736244 | 1736113 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1735014 | 1735157 | 1735014 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1733743 | 1733874 | 1733743 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1733464 | 1733569 | 1733464 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1732938 | 1733023 | 1732938 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| chr4_3 | CDS | 1732214 | 1732271 | 1732214 | ID=Msa0623930-mRNA-1:cds;Parent=Msa0623930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
