Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626310 | XP_039687244.1 | 87.591 | 137 | 7 | 1 | 166 | 292 | 1 | 137 | 2.40e-77 | 243 |
| Msa0626310 | XP_039687244.1 | 90.164 | 61 | 6 | 0 | 105 | 165 | 42 | 102 | 1.10e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626310 | sp|Q8H1G0|GAT28_ARATH | 58.140 | 129 | 50 | 1 | 191 | 315 | 156 | 284 | 4.72e-42 | 150 |
| Msa0626310 | sp|Q8H1G0|GAT28_ARATH | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.18e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0626310 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623930 | Msa0626310 | 0.936670 | 1.197437e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626310 | MtrunA17_Chr4g0002231 | 85.185 | 135 | 12 | 1 | 166 | 292 | 1 | 135 | 2.44e-79 | 238 |
| Msa0626310 | MtrunA17_Chr4g0002231 | 89.831 | 59 | 6 | 0 | 107 | 165 | 42 | 100 | 2.06e-27 | 104 |
| Msa0626310 | MtrunA17_Chr3g0132761 | 51.020 | 147 | 56 | 4 | 151 | 292 | 99 | 234 | 1.91e-33 | 125 |
| Msa0626310 | MtrunA17_Chr5g0427661 | 53.659 | 123 | 43 | 4 | 173 | 292 | 126 | 237 | 8.65e-30 | 115 |
| Msa0626310 | MtrunA17_Chr3g0132751 | 41.259 | 143 | 74 | 4 | 191 | 331 | 140 | 274 | 9.58e-27 | 108 |
| Msa0626310 | MtrunA17_Chr4g0049741 | 51.961 | 102 | 42 | 2 | 191 | 292 | 117 | 211 | 8.27e-25 | 102 |
| Msa0626310 | MtrunA17_Chr4g0065421 | 62.222 | 90 | 28 | 1 | 1 | 84 | 1 | 90 | 1.09e-24 | 103 |
| Msa0626310 | MtrunA17_Chr4g0002251 | 87.500 | 32 | 4 | 0 | 257 | 288 | 8 | 39 | 2.17e-15 | 70.1 |
| Msa0626310 | MtrunA17_Chr4g0002261 | 61.538 | 52 | 19 | 1 | 81 | 131 | 15 | 66 | 6.14e-13 | 63.2 |
| Msa0626310 | MtrunA17_Chr3g0102511 | 40.000 | 90 | 46 | 3 | 206 | 295 | 4 | 85 | 3.86e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626310 | AT1G51600.1 | 58.140 | 129 | 50 | 1 | 191 | 315 | 156 | 284 | 4.79e-43 | 150 |
| Msa0626310 | AT1G51600.1 | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.20e-18 | 85.5 |
| Msa0626310 | AT1G51600.2 | 58.140 | 129 | 50 | 1 | 191 | 315 | 156 | 284 | 4.79e-43 | 150 |
| Msa0626310 | AT1G51600.2 | 59.722 | 72 | 28 | 1 | 80 | 150 | 136 | 207 | 1.20e-18 | 85.5 |
| Msa0626310 | AT3G21175.2 | 60.784 | 102 | 40 | 0 | 191 | 292 | 150 | 251 | 1.87e-38 | 138 |
| Msa0626310 | AT3G21175.2 | 46.939 | 98 | 49 | 2 | 81 | 178 | 132 | 226 | 9.47e-15 | 73.9 |
| Msa0626310 | AT3G21175.1 | 60.784 | 102 | 40 | 0 | 191 | 292 | 152 | 253 | 2.02e-38 | 138 |
| Msa0626310 | AT3G21175.1 | 46.939 | 98 | 49 | 2 | 81 | 178 | 134 | 228 | 9.95e-15 | 73.9 |
| Msa0626310 | AT4G24470.3 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 1.81e-29 | 115 |
| Msa0626310 | AT4G24470.1 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 1.99e-29 | 115 |
| Msa0626310 | AT4G24470.2 | 56.311 | 103 | 34 | 3 | 193 | 292 | 154 | 248 | 1.99e-29 | 115 |
| Msa0626310 | AT3G21175.3 | 51.429 | 70 | 34 | 0 | 81 | 150 | 132 | 201 | 1.82e-15 | 74.7 |
| Msa0626310 | AT3G21175.3 | 59.615 | 52 | 21 | 0 | 191 | 242 | 150 | 201 | 9.59e-13 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4_3:-5760635 | Msa0626310:intron |
| AATTTGGTTTCTTCCGGTTT+TGG | 0.255949 | 4_3:+5764815 | None:intergenic |
| AATTGAAGAAAGAGGAAGTT+AGG | 0.270252 | 4_3:+5765141 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_3:+5760667 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_3:+5760658 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.303190 | 4_3:-5761032 | Msa0626310:intron |
| GAAAGAGGAAGTTAGGGTTT+TGG | 0.321403 | 4_3:+5765148 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_3:-5763403 | Msa0626310:intron |
| TCTGTGAGAAAGTGTAAATT+TGG | 0.338132 | 4_3:+5764861 | None:intergenic |
| GAAATCTAAACCTTTGAAAT+CGG | 0.338857 | 4_3:+5764906 | None:intergenic |
| GTTGGAGAGTTGGGAGGCTT+TGG | 0.340553 | 4_3:+5765017 | None:intergenic |
| TGTCAAAATTTGGTTTCTTC+CGG | 0.341377 | 4_3:+5764809 | None:intergenic |
| TCGACATAACAATGAAATAA+TGG | 0.356687 | 4_3:-5765058 | Msa0626310:CDS |
| TTCTCACAGATTAGCTTCAT+TGG | 0.358559 | 4_3:-5764848 | Msa0626310:CDS |
| TATATGCAAAAGTTGTTAGT+TGG | 0.361179 | 4_3:-5760055 | Msa0626310:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_3:-5760952 | Msa0626310:CDS |
| AACCCTCTCGTTGGAGAGTT+GGG | 0.386351 | 4_3:+5765008 | None:intergenic |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_3:+5760685 | None:intergenic |
| ATATGCAAAAGTTGTTAGTT+GGG | 0.418267 | 4_3:-5760054 | Msa0626310:CDS |
| AGTGTAAATTTGGGTGAAGT+AGG | 0.428207 | 4_3:+5764871 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.431240 | 4_3:+5763285 | None:intergenic |
| TTGAATTGAATTGAAGAAAG+AGG | 0.456790 | 4_3:+5765133 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.457624 | 4_3:+5763284 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.460419 | 4_3:+5760913 | None:intergenic |
| ATGAGTGTCTGATGAGAAAT+GGG | 0.462114 | 4_3:+5764950 | None:intergenic |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_3:+5760995 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.464252 | 4_3:+5760914 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_3:+5761009 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_3:+5763380 | None:intergenic |
| ATTGAAGAAAGAGGAAGTTA+GGG | 0.472718 | 4_3:+5765142 | None:intergenic |
| AGACTCATCAAGGTTGGACT+TGG | 0.472965 | 4_3:+5762278 | None:intergenic |
| AATGAGTGTCTGATGAGAAA+TGG | 0.473328 | 4_3:+5764949 | None:intergenic |
| TGGACTTGGTAGATGTAAAT+CGG | 0.473810 | 4_3:+5762292 | None:intergenic |
| AAATCTAAACCTTTGAAATC+GGG | 0.482007 | 4_3:+5764907 | None:intergenic |
| AGACTCGTCATGGTTGGACT+TGG | 0.484402 | 4_3:+5763366 | None:intergenic |
| TAACCCTCTCGTTGGAGAGT+TGG | 0.497538 | 4_3:+5765007 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_3:+5760985 | None:intergenic |
| TTTAGGATGCAAAGAAGTAA+AGG | 0.501385 | 4_3:-5762315 | Msa0626310:intron |
| AATGGGAGGTAGTAGAAGAC+TGG | 0.501501 | 4_3:-5760124 | Msa0626310:CDS |
| CAGCTGATGCAGACTCATCA+AGG | 0.503903 | 4_3:+5762268 | None:intergenic |
| CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4_3:-5760644 | Msa0626310:CDS |
| GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4_3:-5760645 | Msa0626310:CDS |
| CTGTGAGAAAGTGTAAATTT+GGG | 0.521016 | 4_3:+5764862 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_3:-5760682 | Msa0626310:CDS |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_3:-5762188 | Msa0626310:intron |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_3:-5764768 | Msa0626310:intron |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_3:-5760655 | Msa0626310:CDS |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_3:-5760960 | Msa0626310:CDS |
| AAGACTGGGCGTACAACCTA+AGG | 0.553754 | 4_3:-5760109 | Msa0626310:CDS |
| GGTCTGATGGCAGTCAATGA+TGG | 0.558320 | 4_3:-5763310 | Msa0626310:CDS |
| AATGAGTTGCGAAACGCGGA+AGG | 0.558566 | 4_3:-5762244 | Msa0626310:CDS |
| CAGCCGATGCAGACTCGTCA+TGG | 0.558934 | 4_3:+5763356 | None:intergenic |
| GGTATTCCACCCGATTTCAA+AGG | 0.560480 | 4_3:-5764916 | Msa0626310:CDS |
| TCTTCAATTCAATTCAACAA+TGG | 0.563651 | 4_3:-5765127 | Msa0626310:exon |
| TGATGCAGACTCATCAAGGT+TGG | 0.570117 | 4_3:+5762272 | None:intergenic |
| AGACACTCATTTCGAACAAG+AGG | 0.579521 | 4_3:-5764937 | Msa0626310:CDS |
| TCTAAACCTTTGAAATCGGG+TGG | 0.581523 | 4_3:+5764910 | None:intergenic |
| TTTGGTAATAACCCTCTCGT+TGG | 0.582765 | 4_3:+5764999 | None:intergenic |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_3:+5760989 | None:intergenic |
| CAACCATGACGAGTCTGCAT+CGG | 0.589195 | 4_3:-5763359 | Msa0626310:CDS |
| CGATGCAGACTCGTCATGGT+TGG | 0.592233 | 4_3:+5763360 | None:intergenic |
| CTGAAATGAGTTGCGAAACG+CGG | 0.599299 | 4_3:-5762248 | Msa0626310:CDS |
| GCATCGGCTGAAATGAATTG+TGG | 0.599724 | 4_3:-5763343 | Msa0626310:CDS |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_3:-5760988 | Msa0626310:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_3:-5760681 | Msa0626310:CDS |
| TGGAACAAGTGAAGGTCTGA+TGG | 0.607490 | 4_3:-5763323 | Msa0626310:CDS |
| ATGAATTGTGGAACAAGTGA+AGG | 0.614158 | 4_3:-5763331 | Msa0626310:CDS |
| TCGGTATAATGTTCGTAGAG+AGG | 0.616329 | 4_3:-5762199 | Msa0626310:CDS |
| CCTCTCGTTGGAGAGTTGGG+AGG | 0.627742 | 4_3:+5765011 | None:intergenic |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_3:-5760696 | Msa0626310:CDS |
| CTCCCAACTCTCCAACGAGA+GGG | 0.632798 | 4_3:-5765010 | Msa0626310:CDS |
| ATGGGAGGTAGTAGAAGACT+GGG | 0.636419 | 4_3:-5760123 | Msa0626310:CDS |
| TTTGGATTGAAGTTTGAGTG+CGG | 0.640222 | 4_3:+5765035 | None:intergenic |
| GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4_3:-5760972 | Msa0626310:CDS |
| GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4_3:+5760650 | None:intergenic |
| CCTCCCAACTCTCCAACGAG+AGG | 0.652112 | 4_3:-5765011 | Msa0626310:CDS |
| TCGGTGTAATGTTCGTAGAG+AGG | 0.656453 | 4_3:-5764779 | Msa0626310:CDS |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_3:-5760691 | Msa0626310:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4_3:+5760651 | None:intergenic |
| TGAGTGTCTGATGAGAAATG+GGG | 0.715103 | 4_3:+5764951 | None:intergenic |
| GGTTTGATGGCAGACAACGA+TGG | 0.718774 | 4_3:-5760939 | Msa0626310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTAAATTATTAATA+AGG | - | chr4_3:5763668-5763687 | Msa0626310:intron | 0.0% |
| !!! | AGTTATTTTTATAATCTATA+TGG | - | chr4_3:5760592-5760611 | Msa0626310:intron | 10.0% |
| !! | AAATTTATCAAAATAACTTA+TGG | + | chr4_3:5760659-5760678 | None:intergenic | 10.0% |
| !!! | ATAATTTTAAATTCGTAACA+AGG | - | chr4_3:5761292-5761311 | Msa0626310:intron | 15.0% |
| !! | TCAAAAATTGTATAAGAAAA+TGG | - | chr4_3:5761445-5761464 | Msa0626310:intron | 15.0% |
| !! | CACATATAATAAAATAACTT+CGG | + | chr4_3:5762807-5762826 | None:intergenic | 15.0% |
| !!! | AAAATTTTGACAAAAAAGTT+CGG | - | chr4_3:5762954-5762973 | Msa0626310:intron | 15.0% |
| !! | TTAAATTATTAATAAGGAGA+TGG | - | chr4_3:5763674-5763693 | Msa0626310:intron | 15.0% |
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_3:5764324-5764343 | Msa0626310:intron | 15.0% |
| !! | CCTTTATATTATTTGATAAA+CGG | - | chr4_3:5764408-5764427 | Msa0626310:intron | 15.0% |
| !!! | CAAATTTTGACAAAAATGTT+CGG | - | chr4_3:5760374-5760393 | Msa0626310:intron | 20.0% |
| !! | GTATATTTCTTCATAACATA+CGG | + | chr4_3:5761180-5761199 | None:intergenic | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_3:5761577-5761596 | None:intergenic | 20.0% |
| !!! | ATTGGTTTATTTTTGAACAA+GGG | - | chr4_3:5761914-5761933 | Msa0626310:intron | 20.0% |
| !!! | TATTTTGCGATTATGAAAAA+TGG | + | chr4_3:5762113-5762132 | None:intergenic | 20.0% |
| !!! | GATAGATATTTGCTTTTAAA+AGG | - | chr4_3:5762183-5762202 | Msa0626310:intron | 20.0% |
| !!! | TTAATTTTGAATTCCTAACA+AGG | - | chr4_3:5762404-5762423 | Msa0626310:intron | 20.0% |
| !! | TAAGAAATTGTAAACGAAAA+TGG | - | chr4_3:5762529-5762548 | Msa0626310:intron | 20.0% |
| !!! | TGATAGATATTTGTTTCTTT+TGG | - | chr4_3:5763393-5763412 | Msa0626310:CDS | 20.0% |
| !!! | GATAGATATTTGTTTCTTTT+GGG | - | chr4_3:5763394-5763413 | Msa0626310:CDS | 20.0% |
| !!! | ATAGATATTTGTTTCTTTTG+GGG | - | chr4_3:5763395-5763414 | Msa0626310:CDS | 20.0% |
| !! | ACTATATATTGTTTCAGTTT+CGG | - | chr4_3:5763450-5763469 | Msa0626310:intron | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_3:5763563-5763582 | None:intergenic | 20.0% |
| !! | CATAAAGAATGATATAACTT+TGG | - | chr4_3:5763561-5763580 | Msa0626310:intron | 20.0% |
| !!! | ATAACTTTGGAAATTTAAAG+TGG | - | chr4_3:5763574-5763593 | Msa0626310:intron | 20.0% |
| !!! | TAACTTTGGAAATTTAAAGT+GGG | - | chr4_3:5763575-5763594 | Msa0626310:intron | 20.0% |
| !! | AATTGTATAAGAAAATAGCA+AGG | - | chr4_3:5763824-5763843 | Msa0626310:intron | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_3:5761577-5761596 | None:intergenic | 20.0% |
| !! | CACATAAAACAAAATAATGT+CGG | + | chr4_3:5764091-5764110 | None:intergenic | 20.0% |
| !!! | ACAAATACAAGTAACTTTTT+AGG | - | chr4_3:5764123-5764142 | Msa0626310:intron | 20.0% |
| !!! | CTTGAAAATAAAGTCTTATT+TGG | - | chr4_3:5764359-5764378 | Msa0626310:intron | 20.0% |
| !! | TATAAAGGACAATTTAGTAT+AGG | + | chr4_3:5764396-5764415 | None:intergenic | 20.0% |
| !! | CCGTTTATCAAATAATATAA+AGG | + | chr4_3:5764411-5764430 | None:intergenic | 20.0% |
| !!! | TTAGGTTTTTTTTTTTGTTG+AGG | + | chr4_3:5765094-5765113 | None:intergenic | 20.0% |
| !! | TCAACAAAAAAAAAAACCTA+AGG | - | chr4_3:5765093-5765112 | Msa0626310:CDS | 20.0% |
| ! | TTGAATTGAATTGAAGAAAG+AGG | + | chr4_3:5760042-5760061 | None:intergenic | 25.0% |
| ! | TCTTCAATTCAATTCAACAA+TGG | - | chr4_3:5760045-5760064 | Msa0626310:CDS | 25.0% |
| ! | TCGACATAACAATGAAATAA+TGG | - | chr4_3:5760114-5760133 | Msa0626310:CDS | 25.0% |
| !!! | TTTTGGTTTTTTCTCTGATT+TGG | + | chr4_3:5760194-5760213 | None:intergenic | 25.0% |
| !!! | AAATCTAAACCTTTGAAATC+GGG | + | chr4_3:5760268-5760287 | None:intergenic | 25.0% |
| !!! | GAAATCTAAACCTTTGAAAT+CGG | + | chr4_3:5760269-5760288 | None:intergenic | 25.0% |
| !! | CGAACATTTTTGTCAAAATT+TGG | + | chr4_3:5760376-5760395 | None:intergenic | 25.0% |
| ! | TTTAAATCAACATGTTGTAC+TGG | - | chr4_3:5760454-5760473 | Msa0626310:intron | 25.0% |
| !!! | TAAGTTTTGTGATTCTGTTT+GGG | + | chr4_3:5760683-5760702 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGATTCTGTT+TGG | + | chr4_3:5760684-5760703 | None:intergenic | 25.0% |
| !!! | GATGGATATTTGCTTTTAAA+AGG | - | chr4_3:5760993-5761012 | Msa0626310:CDS | 25.0% |
| !!! | TATATCAGTTAAGCTTTAGA+TGG | + | chr4_3:5761141-5761160 | None:intergenic | 25.0% |
| ! | ACAACTTTGCAAATTTAAAG+TGG | - | chr4_3:5761198-5761217 | Msa0626310:intron | 25.0% |
| !! | AATTTAAAGTGGAGATTTGA+TGG | - | chr4_3:5761209-5761228 | Msa0626310:intron | 25.0% |
| ! | ATTGAAGTAAAAATGAAAGC+AGG | - | chr4_3:5761512-5761531 | Msa0626310:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+GGG | + | chr4_3:5761569-5761588 | None:intergenic | 25.0% |
| ! | TTATCATTACATATGGTGTT+AGG | + | chr4_3:5761570-5761589 | None:intergenic | 25.0% |
| ! | GGACATAAACAAAATAATGT+CGG | + | chr4_3:5761720-5761739 | None:intergenic | 25.0% |
| ! | CAAATACAACTAACTTCTTT+AGG | - | chr4_3:5761752-5761771 | Msa0626310:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_3:5761769-5761788 | Msa0626310:intron | 25.0% |
| !!! | AAGATAATGTGTAAGTTGAT+TGG | - | chr4_3:5761896-5761915 | Msa0626310:intron | 25.0% |
| !!! | GATTGGTTTATTTTTGAACA+AGG | - | chr4_3:5761913-5761932 | Msa0626310:intron | 25.0% |
| !!! | AGATATTTGCTTTTAAAAGG+AGG | - | chr4_3:5762186-5762205 | Msa0626310:intron | 25.0% |
| ! | ATTTCAGTTCATATTAGTCA+AGG | - | chr4_3:5762279-5762298 | Msa0626310:CDS | 25.0% |
| ! | TATATCAGTTAAGCATTAGA+TGG | + | chr4_3:5762330-5762349 | None:intergenic | 25.0% |
| ! | GAGAAGATAAAAAACAAACT+TGG | - | chr4_3:5762373-5762392 | Msa0626310:intron | 25.0% |
| ! | GAGAAGATTATCATTACATA+CGG | + | chr4_3:5762665-5762684 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr4_3:5763153-5763172 | None:intergenic | 25.0% |
| ! | AAACAAATATCTATCATTGC+AGG | + | chr4_3:5763389-5763408 | None:intergenic | 25.0% |
| ! | ATATCATTCTTTATGGCATA+AGG | + | chr4_3:5763556-5763575 | None:intergenic | 25.0% |
| !! | AACTTTGGAAATTTAAAGTG+GGG | - | chr4_3:5763576-5763595 | Msa0626310:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+AGG | + | chr4_3:5761569-5761588 | None:intergenic | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_3:5761769-5761788 | Msa0626310:intron | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_3:5764285-5764304 | Msa0626310:intron | 25.0% |
| ! | ATTAACCCGTAATAATTGTA+TGG | + | chr4_3:5764625-5764644 | None:intergenic | 25.0% |
| !!! | ATGTTTTTATTAATTCCACC+TGG | - | chr4_3:5764798-5764817 | Msa0626310:CDS | 25.0% |
| ! | AATGTGAAGATACATAAACA+GGG | + | chr4_3:5764901-5764920 | None:intergenic | 25.0% |
| ! | AAATGTGAAGATACATAAAC+AGG | + | chr4_3:5764902-5764921 | None:intergenic | 25.0% |
| ! | TATATGCAAAAGTTGTTAGT+TGG | - | chr4_3:5765117-5765136 | Msa0626310:exon | 25.0% |
| ! | ATATGCAAAAGTTGTTAGTT+GGG | - | chr4_3:5765118-5765137 | Msa0626310:exon | 25.0% |
| ATTGAAGAAAGAGGAAGTTA+GGG | + | chr4_3:5760033-5760052 | None:intergenic | 30.0% | |
| AATTGAAGAAAGAGGAAGTT+AGG | + | chr4_3:5760034-5760053 | None:intergenic | 30.0% | |
| ! | CTGTGAGAAAGTGTAAATTT+GGG | + | chr4_3:5760313-5760332 | None:intergenic | 30.0% |
| ! | TCTGTGAGAAAGTGTAAATT+TGG | + | chr4_3:5760314-5760333 | None:intergenic | 30.0% |
| ! | TGTCAAAATTTGGTTTCTTC+CGG | + | chr4_3:5760366-5760385 | None:intergenic | 30.0% |
| TAGCATTAAGGTATGTGTAT+AGG | - | chr4_3:5760416-5760435 | Msa0626310:intron | 30.0% | |
| AGCATTAAGGTATGTGTATA+GGG | - | chr4_3:5760417-5760436 | Msa0626310:intron | 30.0% | |
| GTTAGTTCAAAAGCTCAATT+AGG | - | chr4_3:5760704-5760723 | Msa0626310:CDS | 30.0% | |
| AAAAACAAGCCAATCCAAAT+GGG | + | chr4_3:5760751-5760770 | None:intergenic | 30.0% | |
| CAATCCAAATGAATTCATAG+TGG | - | chr4_3:5760951-5760970 | Msa0626310:CDS | 30.0% | |
| AAGCAAATATCCATCATTGT+AGG | + | chr4_3:5760988-5761007 | None:intergenic | 30.0% | |
| GTTTCAGTTCATATTAGTCA+AGG | - | chr4_3:5761090-5761109 | Msa0626310:intron | 30.0% | |
| ! | TGGAGATTTGATGGATATAT+TGG | - | chr4_3:5761218-5761237 | Msa0626310:intron | 30.0% |
| TTAAATTCGTAACAAGGAGA+TGG | - | chr4_3:5761298-5761317 | Msa0626310:intron | 30.0% | |
| AATTGTATAAGAAAATGGCG+AGG | - | chr4_3:5761450-5761469 | Msa0626310:intron | 30.0% | |
| ! | TTGTATTTGTTAGCAAGTGT+TGG | + | chr4_3:5761741-5761760 | None:intergenic | 30.0% |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_3:5761890-5761909 | None:intergenic | 30.0% |
| TATGATTCATAAGCTTGTCA+AGG | - | chr4_3:5761998-5762017 | Msa0626310:intron | 30.0% | |
| AAATATCTATCATTGCAGAC+TGG | + | chr4_3:5762174-5762193 | None:intergenic | 30.0% | |
| !! | TCTTTTGGGAAATAGTATTC+AGG | - | chr4_3:5762222-5762241 | Msa0626310:CDS | 30.0% |
| AATTGTAAACGAAAATGGTG+AGG | - | chr4_3:5762534-5762553 | Msa0626310:intron | 30.0% | |
| ATTGTAAACGAAAATGGTGA+GGG | - | chr4_3:5762535-5762554 | Msa0626310:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+GGG | + | chr4_3:5762694-5762713 | None:intergenic | 30.0% |
| !! | ACTATTACACTGCTTTAAGA+AGG | + | chr4_3:5762695-5762714 | None:intergenic | 30.0% |
| CAAATACAAGCAACTTCTTT+AGG | - | chr4_3:5762840-5762859 | Msa0626310:intron | 30.0% | |
| ! | TTTAGGATGCAAAGAAGTAA+AGG | - | chr4_3:5762857-5762876 | Msa0626310:intron | 30.0% |
| TAGCATTAAGGTATGTTTAG+AGG | - | chr4_3:5762996-5763015 | Msa0626310:intron | 30.0% | |
| AGCATTAAGGTATGTTTAGA+GGG | - | chr4_3:5762997-5763016 | Msa0626310:intron | 30.0% | |
| AAAAGGATCAATGTTCTGTT+TGG | + | chr4_3:5763136-5763155 | None:intergenic | 30.0% | |
| ! | AAACAGAACATTGATCCTTT+TGG | - | chr4_3:5763135-5763154 | Msa0626310:intron | 30.0% |
| !! | TATATCAGCTAAGCTTTAGA+TGG | + | chr4_3:5763517-5763536 | None:intergenic | 30.0% |
| ! | CTCTATAACATTTGCTACAT+AGG | + | chr4_3:5763704-5763723 | None:intergenic | 30.0% |
| AGAGAAGATAGAAACAAACT+AGG | - | chr4_3:5763722-5763741 | Msa0626310:intron | 30.0% | |
| GAAAATAGCAAGGAAAATGT+TGG | - | chr4_3:5763834-5763853 | Msa0626310:intron | 30.0% | |
| GTTGAAGTAAAAATGAAAGC+AGG | - | chr4_3:5763881-5763900 | Msa0626310:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+AGG | + | chr4_3:5762694-5762713 | None:intergenic | 30.0% |
| AAATAATGTCGGTCATAACA+TGG | + | chr4_3:5764080-5764099 | None:intergenic | 30.0% | |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_3:5761890-5761909 | None:intergenic | 30.0% |
| AAGATAATGTGTAAGTAGAC+TGG | - | chr4_3:5764267-5764286 | Msa0626310:intron | 30.0% | |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_3:5764284-5764303 | Msa0626310:intron | 30.0% |
| !!! | GTTTATTTTTGAACAAGGGA+AGG | - | chr4_3:5761918-5761937 | Msa0626310:intron | 30.0% |
| TTTCAACTCATATCAGTTGT+AGG | - | chr4_3:5764437-5764456 | Msa0626310:intron | 30.0% | |
| AGCAACATTGGAAAAACAAA+AGG | + | chr4_3:5764602-5764621 | None:intergenic | 30.0% | |
| ATAATTGTATGGAGCAACAT+TGG | + | chr4_3:5764614-5764633 | None:intergenic | 30.0% | |
| GTTGCTCCATACAATTATTA+CGG | - | chr4_3:5764616-5764635 | Msa0626310:intron | 30.0% | |
| TTGCTCCATACAATTATTAC+GGG | - | chr4_3:5764617-5764636 | Msa0626310:intron | 30.0% | |
| !! | TTACGGGTTAATCATGATTT+TGG | - | chr4_3:5764633-5764652 | Msa0626310:intron | 30.0% |
| ! | CGAATTGGCTTAATATTACA+GGG | + | chr4_3:5764660-5764679 | None:intergenic | 30.0% |
| CCTGTAATATTAAGCCAATT+CGG | - | chr4_3:5764658-5764677 | Msa0626310:intron | 30.0% | |
| ! | ATATTAAGCCAATTCGGTTT+TGG | - | chr4_3:5764664-5764683 | Msa0626310:intron | 30.0% |
| ACAATGACAGATAAATGAAG+GGG | + | chr4_3:5764733-5764752 | None:intergenic | 30.0% | |
| CACAATGACAGATAAATGAA+GGG | + | chr4_3:5764734-5764753 | None:intergenic | 30.0% | |
| TCACAATGACAGATAAATGA+AGG | + | chr4_3:5764735-5764754 | None:intergenic | 30.0% | |
| TCATTGTGAATGTGTTAAAG+TGG | - | chr4_3:5764746-5764765 | Msa0626310:intron | 30.0% | |
| AAAATGAAGGAGAAGATGAA+TGG | + | chr4_3:5764856-5764875 | None:intergenic | 30.0% | |
| TTTCAGATTTGCAGGAAAAA+TGG | - | chr4_3:5765030-5765049 | Msa0626310:CDS | 30.0% | |
| TTCAGATTTGCAGGAAAAAT+GGG | - | chr4_3:5765031-5765050 | Msa0626310:CDS | 30.0% | |
| ! | TTTTGTTGAGGTATAACCTT+AGG | + | chr4_3:5765082-5765101 | None:intergenic | 30.0% |
| ! | CAACTTTTGCATATAACCTT+AGG | + | chr4_3:5765112-5765131 | None:intergenic | 30.0% |
| TTTGGATTGAAGTTTGAGTG+CGG | + | chr4_3:5760140-5760159 | None:intergenic | 35.0% | |
| ! | AGAAATGGGGTTTCAGTTTT+TGG | + | chr4_3:5760211-5760230 | None:intergenic | 35.0% |
| ATGAGTGTCTGATGAGAAAT+GGG | + | chr4_3:5760225-5760244 | None:intergenic | 35.0% | |
| AATGAGTGTCTGATGAGAAA+TGG | + | chr4_3:5760226-5760245 | None:intergenic | 35.0% | |
| !! | GTGAAGTAGGAGTTTTATGA+TGG | + | chr4_3:5760291-5760310 | None:intergenic | 35.0% |
| AGTGTAAATTTGGGTGAAGT+AGG | + | chr4_3:5760304-5760323 | None:intergenic | 35.0% | |
| !! | TTCTCACAGATTAGCTTCAT+TGG | - | chr4_3:5760324-5760343 | Msa0626310:intron | 35.0% |
| ! | TGGTTACATTTTGCCAAAAC+CGG | - | chr4_3:5760344-5760363 | Msa0626310:intron | 35.0% |
| !! | AATTTGGTTTCTTCCGGTTT+TGG | + | chr4_3:5760360-5760379 | None:intergenic | 35.0% |
| AAATGGGTCAATGTTCTGTT+TGG | + | chr4_3:5760735-5760754 | None:intergenic | 35.0% | |
| AAACAGAACATTGACCCATT+TGG | - | chr4_3:5760734-5760753 | Msa0626310:intron | 35.0% | |
| CAAAAACAAGCCAATCCAAA+TGG | + | chr4_3:5760752-5760771 | None:intergenic | 35.0% | |
| CATGATTCATAAGCTTGTCA+AGG | - | chr4_3:5760814-5760833 | Msa0626310:intron | 35.0% | |
| ACTGCCACTATGAATTCATT+TGG | + | chr4_3:5760958-5760977 | None:intergenic | 35.0% | |
| ! | CTTTTGTGGTAATAGTGTTC+AGG | - | chr4_3:5761033-5761052 | Msa0626310:intron | 35.0% |
| CTATTACACTGCTTTACGAA+AGG | + | chr4_3:5761606-5761625 | None:intergenic | 35.0% | |
| ATGAATTGTGGAACAAGTGA+AGG | - | chr4_3:5761841-5761860 | Msa0626310:intron | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_3:5761891-5761910 | None:intergenic | 35.0% |
| ACAAGGGAAGAAAAACTGAA+TGG | - | chr4_3:5761930-5761949 | Msa0626310:intron | 35.0% | |
| CAAGGGAAGAAAAACTGAAT+GGG | - | chr4_3:5761931-5761950 | Msa0626310:intron | 35.0% | |
| ! | AACTATGGACTTGTTTGGAT+TGG | + | chr4_3:5762138-5762157 | None:intergenic | 35.0% |
| AATCCAAACAAGTCCATAGT+TGG | - | chr4_3:5762137-5762156 | Msa0626310:intron | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_3:5762285-5762304 | Msa0626310:CDS | 35.0% | |
| TTGAATTCCTAACAAGGAGA+TGG | - | chr4_3:5762410-5762429 | Msa0626310:intron | 35.0% | |
| GAAAATGGTGAGGGAAATAT+TGG | - | chr4_3:5762544-5762563 | Msa0626310:intron | 35.0% | |
| ! | TGGACTTGGTAGATGTAAAT+CGG | + | chr4_3:5762883-5762902 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTCTT+TGG | + | chr4_3:5763085-5763104 | None:intergenic | 35.0% |
| ! | GAACATTGATCCTTTTGGAT+TGG | - | chr4_3:5763140-5763159 | Msa0626310:intron | 35.0% |
| GTTTCGGTTCATATTAGTCA+AGG | - | chr4_3:5763466-5763485 | Msa0626310:intron | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_3:5762285-5762304 | Msa0626310:CDS | 35.0% | |
| GGGGATTTGATGAATACATT+TGG | - | chr4_3:5763595-5763614 | Msa0626310:intron | 35.0% | |
| ACTCAGCATATAAACTTGAC+AGG | + | chr4_3:5761653-5761672 | None:intergenic | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_3:5761891-5761910 | None:intergenic | 35.0% |
| TGTGGGCAAATAAGGTAAAT+GGG | - | chr4_3:5764545-5764564 | Msa0626310:intron | 35.0% | |
| ! | CCGAATTGGCTTAATATTAC+AGG | + | chr4_3:5764661-5764680 | None:intergenic | 35.0% |
| GATAAATGAAGGGGAAAAAG+TGG | + | chr4_3:5764724-5764743 | None:intergenic | 35.0% | |
| ! | GTTAAAGTGGCATACTGATT+TGG | - | chr4_3:5764759-5764778 | Msa0626310:intron | 35.0% |
| GAGATGCGAAGAAAAAATGA+AGG | + | chr4_3:5764869-5764888 | None:intergenic | 35.0% | |
| TCATCTTCTACTGAATCGTA+TGG | - | chr4_3:5764950-5764969 | Msa0626310:CDS | 35.0% | |
| TTCCTGCAAATCTGAAAAGA+AGG | + | chr4_3:5765027-5765046 | None:intergenic | 35.0% | |
| ! | TTTGGTAATAACCCTCTCGT+TGG | + | chr4_3:5760176-5760195 | None:intergenic | 40.0% |
| TGAGTGTCTGATGAGAAATG+GGG | + | chr4_3:5760224-5760243 | None:intergenic | 40.0% | |
| AGACACTCATTTCGAACAAG+AGG | - | chr4_3:5760235-5760254 | Msa0626310:intron | 40.0% | |
| !! | TCTAAACCTTTGAAATCGGG+TGG | + | chr4_3:5760265-5760284 | None:intergenic | 40.0% |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_3:5760404-5760423 | Msa0626310:intron | 40.0% | |
| !! | ACATGTTGTACTGGCTTGTT+TGG | - | chr4_3:5760463-5760482 | Msa0626310:intron | 40.0% |
| GAACATTGACCCATTTGGAT+TGG | - | chr4_3:5760739-5760758 | Msa0626310:intron | 40.0% | |
| AGTTCATCGACCTACAATGA+TGG | - | chr4_3:5760975-5760994 | Msa0626310:CDS | 40.0% | |
| GTTCATATTAGTCAAGGACC+TGG | - | chr4_3:5761096-5761115 | Msa0626310:intron | 40.0% | |
| CTCATCAGAGAAAAACATCC+AGG | + | chr4_3:5761117-5761136 | None:intergenic | 40.0% | |
| GAAAATGGCGAGGAAAATGT+TGG | - | chr4_3:5761460-5761479 | Msa0626310:intron | 40.0% | |
| AAATAATGTCGGTCAGAACG+TGG | + | chr4_3:5761709-5761728 | None:intergenic | 40.0% | |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_3:5761795-5761814 | None:intergenic | 40.0% | |
| ! | GCTCACTCAGTGTTTCTTTT+GGG | - | chr4_3:5762208-5762227 | Msa0626310:CDS | 40.0% |
| AAGTCTTCCATCTCCTTGTT+AGG | + | chr4_3:5761308-5761327 | None:intergenic | 40.0% | |
| ! | AGAACTCCATTGGAGTGTTA+GGG | + | chr4_3:5762633-5762652 | None:intergenic | 40.0% |
| GTGTTAAGACAGAACTCCAT+TGG | + | chr4_3:5762643-5762662 | None:intergenic | 40.0% | |
| ACTCAGCAGATAAACTTGAC+AGG | + | chr4_3:5762741-5762760 | None:intergenic | 40.0% | |
| TCGGTATAATGTTCGTAGAG+AGG | - | chr4_3:5762973-5762992 | Msa0626310:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_3:5760404-5760423 | Msa0626310:intron | 40.0% | |
| TAGCTTATGCGAAGCAACTT+AGG | - | chr4_3:5763172-5763191 | Msa0626310:intron | 40.0% | |
| CAATCCAAACGAGTTCATAG+TGG | - | chr4_3:5763352-5763371 | Msa0626310:CDS | 40.0% | |
| !! | CTTTTGGGGAAATAGTGTTC+TGG | - | chr4_3:5763409-5763428 | Msa0626310:intron | 40.0% |
| ! | ATGGTGTTAAGGCAGTGTTA+GGG | + | chr4_3:5763927-5763946 | None:intergenic | 40.0% |
| ! | TATGGTGTTAAGGCAGTGTT+AGG | + | chr4_3:5763928-5763947 | None:intergenic | 40.0% |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_3:5761795-5761814 | None:intergenic | 40.0% | |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_3:5764212-5764231 | Msa0626310:intron | 40.0% | |
| CTGTGGGCAAATAAGGTAAA+TGG | - | chr4_3:5764544-5764563 | Msa0626310:intron | 40.0% | |
| TATACGGACCAAAACCGAAT+TGG | + | chr4_3:5764675-5764694 | None:intergenic | 40.0% | |
| CTTCTTCTTCCTCTTGGTTT+AGG | - | chr4_3:5764825-5764844 | Msa0626310:CDS | 40.0% | |
| ATGGTCAAACCTAAACCAAG+AGG | + | chr4_3:5764837-5764856 | None:intergenic | 40.0% | |
| TGAAACATAAGCCCAGTCAA+TGG | + | chr4_3:5765002-5765021 | None:intergenic | 40.0% | |
| ! | TGCCTTCTTTTCAGATTTGC+AGG | - | chr4_3:5765022-5765041 | Msa0626310:CDS | 40.0% |
| AGATTTGCAGGAAAAATGGG+AGG | - | chr4_3:5765034-5765053 | Msa0626310:CDS | 40.0% | |
| GGTATTCCACCCGATTTCAA+AGG | - | chr4_3:5760256-5760275 | Msa0626310:intron | 45.0% | |
| TCGGTGTAATGTTCGTAGAG+AGG | - | chr4_3:5760393-5760412 | Msa0626310:intron | 45.0% | |
| ! | CTCGCTCAGTGTTTCTTTTG+TGG | - | chr4_3:5761019-5761038 | Msa0626310:CDS | 45.0% |
| ! | ATGGTGTTAGGGCAGTGTTA+GGG | + | chr4_3:5761558-5761577 | None:intergenic | 45.0% |
| ! | TATGGTGTTAGGGCAGTGTT+AGG | + | chr4_3:5761559-5761578 | None:intergenic | 45.0% |
| !! | GCATCGGCTGAAATGAATTG+TGG | - | chr4_3:5761829-5761848 | Msa0626310:intron | 45.0% |
| TGGAACAAGTGAAGGTCTGA+TGG | - | chr4_3:5761849-5761868 | Msa0626310:intron | 45.0% | |
| ! | CTGCCAACTATGGACTTGTT+TGG | + | chr4_3:5762143-5762162 | None:intergenic | 45.0% |
| GGTCAATGAACTGCCAACTA+TGG | + | chr4_3:5762153-5762172 | None:intergenic | 45.0% | |
| ! | GGCTCACTCAGTGTTTCTTT+TGG | - | chr4_3:5762207-5762226 | Msa0626310:CDS | 45.0% |
| AACTGACCCTAACACTCCAA+TGG | - | chr4_3:5762624-5762643 | Msa0626310:intron | 45.0% | |
| ! | CAGAACTCCATTGGAGTGTT+AGG | + | chr4_3:5762634-5762653 | None:intergenic | 45.0% |
| AGACTCATCAAGGTTGGACT+TGG | + | chr4_3:5762897-5762916 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAAGGT+TGG | + | chr4_3:5762903-5762922 | None:intergenic | 45.0% | |
| CTGAAATGAGTTGCGAAACG+CGG | - | chr4_3:5762924-5762943 | Msa0626310:intron | 45.0% | |
| ACTGCCACTATGAACTCGTT+TGG | + | chr4_3:5763359-5763378 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_3:5764180-5764199 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_3:5764184-5764203 | Msa0626310:intron | 45.0% | |
| !! | GCATCGGCTGAAATGAATTG+CGG | - | chr4_3:5761829-5761848 | Msa0626310:intron | 45.0% |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_3:5764220-5764239 | Msa0626310:intron | 45.0% | |
| CAATGCTTGTGGACTTCTGT+GGG | - | chr4_3:5764528-5764547 | Msa0626310:intron | 45.0% | |
| TGGACTTCTGTGGGCAAATA+AGG | - | chr4_3:5764537-5764556 | Msa0626310:intron | 45.0% | |
| AGAGGAAGAAGAAGAATGCC+AGG | + | chr4_3:5764819-5764838 | None:intergenic | 45.0% | |
| GGCATTCTTCTTCTTCCTCT+TGG | - | chr4_3:5764819-5764838 | Msa0626310:CDS | 45.0% | |
| TTCTGTTCGTAGCCATTGAC+TGG | - | chr4_3:5764987-5765006 | Msa0626310:CDS | 45.0% | |
| ! | TCTGTTCGTAGCCATTGACT+GGG | - | chr4_3:5764988-5765007 | Msa0626310:CDS | 45.0% |
| AATGGGAGGTAGTAGAAGAC+TGG | - | chr4_3:5765048-5765067 | Msa0626310:CDS | 45.0% | |
| ATGGGAGGTAGTAGAAGACT+GGG | - | chr4_3:5765049-5765068 | Msa0626310:CDS | 45.0% | |
| !!! | TCTAAATTTTTTATTTTATA+CGG | + | chr4_3:5764691-5764710 | None:intergenic | 5.0% |
| AACCCTCTCGTTGGAGAGTT+GGG | + | chr4_3:5760167-5760186 | None:intergenic | 50.0% | |
| TAACCCTCTCGTTGGAGAGT+TGG | + | chr4_3:5760168-5760187 | None:intergenic | 50.0% | |
| AGACTCGTCATGGTTGGACT+TGG | + | chr4_3:5761809-5761828 | None:intergenic | 50.0% | |
| CAACCATGACGAGTCTGCAT+CGG | - | chr4_3:5761813-5761832 | Msa0626310:intron | 50.0% | |
| GGTCTGATGGCAGTCAATGA+TGG | - | chr4_3:5761862-5761881 | Msa0626310:intron | 50.0% | |
| CAGCTGATGCAGACTCATCA+AGG | + | chr4_3:5762907-5762926 | None:intergenic | 50.0% | |
| AATGAGTTGCGAAACGCGGA+AGG | - | chr4_3:5762928-5762947 | Msa0626310:intron | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_3:5764186-5764205 | None:intergenic | 50.0% | |
| ! | GGTTTGATGGCAGACAACGA+TGG | - | chr4_3:5764233-5764252 | Msa0626310:intron | 50.0% |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_3:5764476-5764495 | Msa0626310:intron | 50.0% |
| GCAATGCTTGTGGACTTCTG+TGG | - | chr4_3:5764527-5764546 | Msa0626310:intron | 50.0% | |
| GGAAGAAGAAGAATGCCAGG+TGG | + | chr4_3:5764816-5764835 | None:intergenic | 50.0% | |
| AAGACTGGGCGTACAACCTA+AGG | - | chr4_3:5765063-5765082 | Msa0626310:CDS | 50.0% | |
| GTTGGAGAGTTGGGAGGCTT+TGG | + | chr4_3:5760158-5760177 | None:intergenic | 55.0% | |
| CTCCCAACTCTCCAACGAGA+GGG | - | chr4_3:5760162-5760181 | Msa0626310:intron | 55.0% | |
| CGATGCAGACTCGTCATGGT+TGG | + | chr4_3:5761815-5761834 | None:intergenic | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_3:5764190-5764209 | None:intergenic | 55.0% | |
| CCTCTCGTTGGAGAGTTGGG+AGG | + | chr4_3:5760164-5760183 | None:intergenic | 60.0% | |
| CCTCCCAACTCTCCAACGAG+AGG | - | chr4_3:5760161-5760180 | Msa0626310:intron | 60.0% | |
| CAGCCGATGCAGACTCGTCA+TGG | + | chr4_3:5761819-5761838 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_3:5764490-5764509 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_3:5764490-5764509 | Msa0626310:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_3:5764491-5764510 | Msa0626310:intron | 60.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_3:5764481-5764500 | Msa0626310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5760025 | 5765169 | 5760025 | ID=Msa0626310;Name=Msa0626310 |
| chr4_3 | mRNA | 5760025 | 5765169 | 5760025 | ID=Msa0626310-mRNA-1;Parent=Msa0626310;Name=Msa0626310-mRNA-1;_AED=0.09;_eAED=0.11;_QI=39|0.8|0.83|1|1|1|6|0|333 |
| chr4_3 | exon | 5760025 | 5760150 | 5760025 | ID=Msa0626310-mRNA-1:exon:1639;Parent=Msa0626310-mRNA-1 |
| chr4_3 | exon | 5760636 | 5760741 | 5760636 | ID=Msa0626310-mRNA-1:exon:1638;Parent=Msa0626310-mRNA-1 |
| chr4_3 | exon | 5760918 | 5761049 | 5760918 | ID=Msa0626310-mRNA-1:exon:1637;Parent=Msa0626310-mRNA-1 |
| chr4_3 | exon | 5762189 | 5762332 | 5762189 | ID=Msa0626310-mRNA-1:exon:1636;Parent=Msa0626310-mRNA-1 |
| chr4_3 | exon | 5763289 | 5763420 | 5763289 | ID=Msa0626310-mRNA-1:exon:1635;Parent=Msa0626310-mRNA-1 |
| chr4_3 | exon | 5764769 | 5765169 | 5764769 | ID=Msa0626310-mRNA-1:exon:1634;Parent=Msa0626310-mRNA-1 |
| chr4_3 | five_prime_UTR | 5765131 | 5765169 | 5765131 | ID=Msa0626310-mRNA-1:five_prime_utr;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5764769 | 5765130 | 5764769 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5763289 | 5763420 | 5763289 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5762189 | 5762332 | 5762189 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5760918 | 5761049 | 5760918 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5760636 | 5760741 | 5760636 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| chr4_3 | CDS | 5760025 | 5760150 | 5760025 | ID=Msa0626310-mRNA-1:cds;Parent=Msa0626310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
