Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623970 | AES70172.2 | 66.304 | 92 | 31 | 0 | 7 | 98 | 182 | 273 | 1.02e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623970 | sp|Q9SFU0|SC24A_ARATH | 78.571 | 42 | 9 | 0 | 185 | 226 | 647 | 688 | 7.97e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623970 | G7IZZ0 | 66.304 | 92 | 31 | 0 | 7 | 98 | 182 | 273 | 4.86e-38 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623970 | Msa0791600 | 0.832756 | 7.881584e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623970 | MtrunA17_Chr1g0207921 | 62.025 | 79 | 30 | 0 | 20 | 98 | 116 | 194 | 4.84e-30 | 110 |
| Msa0623970 | MtrunA17_Chr8g0361581 | 59.494 | 79 | 32 | 0 | 20 | 98 | 87 | 165 | 1.96e-28 | 105 |
| Msa0623970 | MtrunA17_Chr7g0237161 | 55.263 | 76 | 34 | 0 | 7 | 82 | 7 | 82 | 1.00e-24 | 93.6 |
| Msa0623970 | MtrunA17_Chr8g0359311 | 48.718 | 78 | 40 | 0 | 21 | 98 | 18 | 95 | 1.57e-22 | 88.6 |
| Msa0623970 | MtrunA17_Chr7g0270401 | 46.591 | 88 | 45 | 1 | 17 | 104 | 187 | 272 | 6.88e-21 | 88.6 |
| Msa0623970 | MtrunA17_Chr1g0178231 | 41.250 | 80 | 47 | 0 | 21 | 100 | 17 | 96 | 1.53e-20 | 84.3 |
| Msa0623970 | MtrunA17_Chr1g0151111 | 38.750 | 80 | 49 | 0 | 21 | 100 | 18 | 97 | 1.12e-18 | 80.1 |
| Msa0623970 | MtrunA17_Chr7g0271481 | 90.476 | 42 | 4 | 0 | 185 | 226 | 629 | 670 | 1.36e-18 | 84.3 |
| Msa0623970 | MtrunA17_Chr1g0206471 | 46.667 | 75 | 39 | 1 | 24 | 97 | 194 | 268 | 2.19e-14 | 70.9 |
| Msa0623970 | MtrunA17_Chr3g0123031 | 47.170 | 53 | 28 | 0 | 48 | 100 | 36 | 88 | 6.18e-12 | 60.1 |
| Msa0623970 | MtrunA17_Chr6g0456161 | 48.000 | 50 | 26 | 0 | 40 | 89 | 1 | 50 | 1.20e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623970 | AT3G07100.1 | 78.571 | 42 | 9 | 0 | 185 | 226 | 647 | 688 | 8.10e-16 | 76.6 |
Find 68 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCCTCTTCTCTCTT+TGG | 0.229241 | 4_3:-1788022 | Msa0623970:CDS |
| AACATCTACCTCCGTGAAAA+TGG | 0.258132 | 4_3:-1788988 | Msa0623970:CDS |
| TTTCGTAGTTTCATGCAATA+AGG | 0.276286 | 4_3:-1788114 | Msa0623970:intron |
| AGAAATTAAGTCATGAATTA+AGG | 0.286247 | 4_3:-1786320 | Msa0623970:CDS |
| TTCGTAGTTTCATGCAATAA+GGG | 0.338966 | 4_3:-1788113 | Msa0623970:intron |
| GGCTCGGTGCTCCGATGGTT+GGG | 0.344847 | 4_3:-1788836 | Msa0623970:CDS |
| GTAAACAACAGTCATGAAAA+TGG | 0.355899 | 4_3:+1788803 | None:intergenic |
| TGGGGAGTGGAAGAGGTTTG+TGG | 0.376452 | 4_3:-1788892 | Msa0623970:CDS |
| CCAACTTTGCAGTGTTCATA+AGG | 0.380463 | 4_3:+1788915 | None:intergenic |
| TCATGCAATAAGGGGTAGTT+TGG | 0.383533 | 4_3:-1788104 | Msa0623970:CDS |
| TCTCCCCATGAGTAGTTGAT+TGG | 0.385877 | 4_3:+1786340 | None:intergenic |
| GGAGGAAATGGCGGAGAGAA+AGG | 0.391973 | 4_3:+1787924 | None:intergenic |
| TTGACGAATGCGCCAACAGC+TGG | 0.413960 | 4_3:-1788965 | Msa0623970:CDS |
| GAGGAAGAGGAGAAGATTGT+GGG | 0.417711 | 4_3:+1788065 | None:intergenic |
| TCCTGTCTGTGTAGGAACTC+TGG | 0.429146 | 4_3:-1786403 | Msa0623970:intron |
| GATTCGATAGTGGGAGTTGA+TGG | 0.434722 | 4_3:+1787965 | None:intergenic |
| AGAGGAAGAGGAGAAGATTG+TGG | 0.438705 | 4_3:+1788064 | None:intergenic |
| AAGGAGTTGTGATTCGATAG+TGG | 0.447701 | 4_3:+1787955 | None:intergenic |
| AAGTTGGTGGGGAGTGGAAG+AGG | 0.453597 | 4_3:-1788899 | Msa0623970:CDS |
| AACCATCGGAGCACCGAGCC+TGG | 0.465504 | 4_3:+1788839 | None:intergenic |
| GCTATCTCTCTCTCCGTTGA+AGG | 0.467878 | 4_3:-1787872 | Msa0623970:intron |
| TGAGTAGTTGATTGGAAAGC+TGG | 0.469222 | 4_3:+1786348 | None:intergenic |
| GGAGAGAAAGGTAGTGATGA+AGG | 0.472251 | 4_3:+1787936 | None:intergenic |
| CCTTATGAACACTGCAAAGT+TGG | 0.474284 | 4_3:-1788915 | Msa0623970:CDS |
| AGGCTCGGTGCTCCGATGGT+TGG | 0.488681 | 4_3:-1788837 | Msa0623970:CDS |
| GCTTTCCAATCAACTACTCA+TGG | 0.497991 | 4_3:-1786345 | Msa0623970:CDS |
| ACTGCAAAGTTGGTGGGGAG+TGG | 0.508704 | 4_3:-1788905 | Msa0623970:CDS |
| CTGTCATACAACTGCCTCAT+CGG | 0.518770 | 4_3:-1789142 | Msa0623970:CDS |
| AGAGGTTTGTGGAGGCTCGC+AGG | 0.521917 | 4_3:-1788881 | Msa0623970:CDS |
| GATCTGTTCAGAAGAGGAAG+AGG | 0.522354 | 4_3:+1788052 | None:intergenic |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | 4_3:-1786284 | Msa0623970:CDS |
| AGGAGTTGTGATTCGATAGT+GGG | 0.525623 | 4_3:+1787956 | None:intergenic |
| GAGAGAAGAGGAAGAAGAGA+AGG | 0.533197 | 4_3:+1788027 | None:intergenic |
| TATGAACACTGCAAAGTTGG+TGG | 0.533301 | 4_3:-1788912 | Msa0623970:CDS |
| AACCAGGCTCGGTGCTCCGA+TGG | 0.536480 | 4_3:-1788841 | Msa0623970:CDS |
| AGGAAGAGGAGAAGATTGTG+GGG | 0.551082 | 4_3:+1788066 | None:intergenic |
| ATGAACACTGCAAAGTTGGT+GGG | 0.553526 | 4_3:-1788911 | Msa0623970:CDS |
| GAGATAAACATCACCTTCAA+CGG | 0.555458 | 4_3:+1787859 | None:intergenic |
| CTTTCCAATCAACTACTCAT+GGG | 0.557387 | 4_3:-1786344 | Msa0623970:CDS |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | 4_3:-1786293 | Msa0623970:CDS |
| TGAGGCAGTTGTATGACAGA+AGG | 0.570987 | 4_3:+1789146 | None:intergenic |
| TGACGAATGCGCCAACAGCT+GGG | 0.573425 | 4_3:-1788964 | Msa0623970:CDS |
| CAAAACACAGTCCCAGCTGT+TGG | 0.574974 | 4_3:+1788953 | None:intergenic |
| GCGCAGATGCTGATTTATGA+AGG | 0.578279 | 4_3:-1789035 | Msa0623970:intron |
| TGCGTGAAGGTGTTAGAACC+AGG | 0.587505 | 4_3:-1788857 | Msa0623970:CDS |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | 4_3:-1786387 | Msa0623970:CDS |
| GTATCATTCTTCCCAACCAT+CGG | 0.593342 | 4_3:+1788825 | None:intergenic |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | 4_3:+1786292 | None:intergenic |
| AAGGTCGATCTGTTCAGAAG+AGG | 0.603567 | 4_3:+1788046 | None:intergenic |
| AGGTGATAGAACGGCATCGA+CGG | 0.606312 | 4_3:+1787988 | None:intergenic |
| GAGGCAGTTGTATGACAGAA+GGG | 0.606321 | 4_3:+1789147 | None:intergenic |
| GAGAGAGAGATAGCGGCCGT+CGG | 0.606989 | 4_3:+1787881 | None:intergenic |
| GAAGGTGTTAGAACCAGGCT+CGG | 0.607195 | 4_3:-1788852 | Msa0623970:CDS |
| GGTGAGGCCAAAGAGAGAAG+AGG | 0.609874 | 4_3:+1788015 | None:intergenic |
| TGAACACTGCAAAGTTGGTG+GGG | 0.610399 | 4_3:-1788910 | Msa0623970:CDS |
| TCGTAGTTTCATGCAATAAG+GGG | 0.611679 | 4_3:-1788112 | Msa0623970:intron |
| AGAGAGATAGCGGCCGTCGG+AGG | 0.621073 | 4_3:+1787884 | None:intergenic |
| GAGGCTCGCAGGCTGCGTGA+AGG | 0.622617 | 4_3:-1788870 | Msa0623970:CDS |
| CGGCATCGACGGCGACGGTG+AGG | 0.630356 | 4_3:+1787999 | None:intergenic |
| TCGATAGTGGGAGTTGATGG+AGG | 0.634300 | 4_3:+1787968 | None:intergenic |
| AGATAACAGGTTTACCGATG+AGG | 0.640869 | 4_3:+1789128 | None:intergenic |
| TAGAACGGCATCGACGGCGA+CGG | 0.644886 | 4_3:+1787994 | None:intergenic |
| AAAAGAGTGGGAGGAAATGG+CGG | 0.653303 | 4_3:+1787915 | None:intergenic |
| AGTTGATGGAGGTGATAGAA+CGG | 0.656286 | 4_3:+1787979 | None:intergenic |
| GGAGTGGAAGAGGTTTGTGG+AGG | 0.662827 | 4_3:-1788889 | Msa0623970:CDS |
| TTTCCAATCAACTACTCATG+GGG | 0.667294 | 4_3:-1786343 | Msa0623970:CDS |
| TTCAACGGAGAGAGAGATAG+CGG | 0.673690 | 4_3:+1787874 | None:intergenic |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | 4_3:-1786292 | Msa0623970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAGTTGTTGATTTTTT+TGG | - | chr4_3:1786685-1786704 | Msa0623970:intron | 15.0% |
| !!! | TAATTATGTTTTATATGAGA+AGG | - | chr4_3:1786735-1786754 | Msa0623970:intron | 15.0% |
| !! | AATTTAATAAACAATGTACA+TGG | - | chr4_3:1787198-1787217 | Msa0623970:intron | 15.0% |
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr4_3:1787653-1787672 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr4_3:1787680-1787699 | Msa0623970:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr4_3:1787681-1787700 | Msa0623970:intron | 15.0% |
| !! | TATTAAAAATTAAGCACAAG+TGG | + | chr4_3:1786356-1786375 | None:intergenic | 20.0% |
| !!! | AGACAAATCTTATTACATTT+TGG | + | chr4_3:1786793-1786812 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr4_3:1787576-1787595 | Msa0623970:intron | 20.0% |
| !! | TATTCTATATATGACATGTT+TGG | + | chr4_3:1787946-1787965 | None:intergenic | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr4_3:1788073-1788092 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr4_3:1788073-1788092 | Msa0623970:CDS | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr4_3:1788193-1788212 | Msa0623970:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr4_3:1788361-1788380 | Msa0623970:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr4_3:1788682-1788701 | None:intergenic | 20.0% |
| !! | AGAAATTAAGTCATGAATTA+AGG | - | chr4_3:1789100-1789119 | Msa0623970:intron | 20.0% |
| ! | TAAATTCAACCAAAGATAAC+AGG | + | chr4_3:1786308-1786327 | None:intergenic | 25.0% |
| !!! | TACTGATTTAGTGAGAATTT+TGG | - | chr4_3:1787709-1787728 | Msa0623970:intron | 25.0% |
| !!! | ACTGATTTAGTGAGAATTTT+GGG | - | chr4_3:1787710-1787729 | Msa0623970:intron | 25.0% |
| !!! | ATTTTGGGTTAAATCAATCT+TGG | - | chr4_3:1787725-1787744 | Msa0623970:intron | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr4_3:1787866-1787885 | Msa0623970:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr4_3:1787914-1787933 | Msa0623970:CDS | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr4_3:1788126-1788145 | Msa0623970:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr4_3:1788256-1788275 | Msa0623970:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr4_3:1788338-1788357 | Msa0623970:intron | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr4_3:1788416-1788435 | None:intergenic | 25.0% |
| ! | GATATTTGTGTAATTGATAG+AGG | - | chr4_3:1788469-1788488 | Msa0623970:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr4_3:1788530-1788549 | None:intergenic | 25.0% |
| ! | GAAATACATTTACTGAGATT+TGG | + | chr4_3:1788653-1788672 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr4_3:1788698-1788717 | None:intergenic | 25.0% |
| GTAAACAACAGTCATGAAAA+TGG | + | chr4_3:1786620-1786639 | None:intergenic | 30.0% | |
| !!! | AAGTAGTTGGGTTTTTTTCT+TGG | - | chr4_3:1786656-1786675 | Msa0623970:intron | 30.0% |
| TTTGTCTAAGCTCAAATGAT+TGG | - | chr4_3:1786806-1786825 | Msa0623970:intron | 30.0% | |
| !! | CATGAAGTCTAAGATTTTCA+AGG | - | chr4_3:1787024-1787043 | Msa0623970:intron | 30.0% |
| TCACTTACTATTGTAGTTAC+CGG | - | chr4_3:1787058-1787077 | Msa0623970:intron | 30.0% | |
| TTTCGTAGTTTCATGCAATA+AGG | - | chr4_3:1787306-1787325 | Msa0623970:intron | 30.0% | |
| TTCGTAGTTTCATGCAATAA+GGG | - | chr4_3:1787307-1787326 | Msa0623970:intron | 30.0% | |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr4_3:1787582-1787601 | Msa0623970:intron | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr4_3:1787803-1787822 | Msa0623970:intron | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr4_3:1787836-1787855 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr4_3:1787865-1787884 | Msa0623970:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr4_3:1787867-1787886 | Msa0623970:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr4_3:1788095-1788114 | Msa0623970:CDS | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr4_3:1788113-1788132 | Msa0623970:intron | 30.0% |
| AAAATTCATATGCAATGGCA+AGG | + | chr4_3:1788411-1788430 | None:intergenic | 30.0% | |
| GTGTTGAACTTATAGTGTAT+TGG | - | chr4_3:1788539-1788558 | Msa0623970:intron | 30.0% | |
| !! | AGTGTATTGGTGTATTGATT+TGG | - | chr4_3:1788552-1788571 | Msa0623970:intron | 30.0% |
| !! | GTGTATTGGTGTATTGATTT+GGG | - | chr4_3:1788553-1788572 | Msa0623970:intron | 30.0% |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr4_3:1788720-1788739 | Msa0623970:intron | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr4_3:1788758-1788777 | Msa0623970:intron | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr4_3:1788801-1788820 | Msa0623970:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr4_3:1788931-1788950 | None:intergenic | 30.0% | |
| ATCGGTAAACCTGTTATCTT+TGG | - | chr4_3:1786296-1786315 | Msa0623970:CDS | 35.0% | |
| !!! | TGGGACTGTGTTTTGATTTT+TGG | - | chr4_3:1786475-1786494 | Msa0623970:intron | 35.0% |
| ! | TGTTGTTTACAACTAGACCT+TGG | - | chr4_3:1786630-1786649 | Msa0623970:intron | 35.0% |
| !!! | TAGTTGGGTTTTTTTCTTGG+AGG | - | chr4_3:1786659-1786678 | Msa0623970:intron | 35.0% |
| TCCAGTGTTTGATGTATCAT+TGG | - | chr4_3:1786900-1786919 | Msa0623970:intron | 35.0% | |
| TTGTAGTTACCAGATCAAGA+AGG | - | chr4_3:1786948-1786967 | Msa0623970:intron | 35.0% | |
| GAGTAATAAAGTGATAGCCA+TGG | - | chr4_3:1787112-1787131 | Msa0623970:intron | 35.0% | |
| TAATAAAGTGATAGCCATGG+AGG | - | chr4_3:1787115-1787134 | Msa0623970:intron | 35.0% | |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr4_3:1787261-1787280 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr4_3:1787262-1787281 | None:intergenic | 35.0% |
| TCGTAGTTTCATGCAATAAG+GGG | - | chr4_3:1787308-1787327 | Msa0623970:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr4_3:1787564-1787583 | None:intergenic | 35.0% | |
| ! | GATGGGATGATAATTTGTGT+TGG | - | chr4_3:1787889-1787908 | Msa0623970:CDS | 35.0% |
| AAGAGAGACTAAATGATTGG+AGG | + | chr4_3:1788016-1788035 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr4_3:1788019-1788038 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr4_3:1788016-1788035 | Msa0623970:CDS | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr4_3:1788213-1788232 | None:intergenic | 35.0% | |
| !! | TAATTGATAGAGGCATTGAG+TGG | - | chr4_3:1788479-1788498 | Msa0623970:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr4_3:1788570-1788589 | Msa0623970:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr4_3:1788606-1788625 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr4_3:1788608-1788627 | Msa0623970:intron | 35.0% |
| TTGGTACTTGAAAAACTCAG+CGG | + | chr4_3:1788634-1788653 | None:intergenic | 35.0% | |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr4_3:1788757-1788776 | Msa0623970:intron | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr4_3:1788822-1788841 | Msa0623970:CDS | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr4_3:1788930-1788949 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr4_3:1788932-1788951 | Msa0623970:CDS | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr4_3:1789009-1789028 | Msa0623970:CDS | 35.0% |
| CTTTCCAATCAACTACTCAT+GGG | - | chr4_3:1789076-1789095 | Msa0623970:intron | 35.0% | |
| TTTCCAATCAACTACTCATG+GGG | - | chr4_3:1789077-1789096 | Msa0623970:intron | 35.0% | |
| AGATAACAGGTTTACCGATG+AGG | + | chr4_3:1786295-1786314 | None:intergenic | 40.0% | |
| AACATCTACCTCCGTGAAAA+TGG | - | chr4_3:1786432-1786451 | Msa0623970:intron | 40.0% | |
| ! | GCATTCGTCAACCATTTTCA+CGG | + | chr4_3:1786446-1786465 | None:intergenic | 40.0% |
| CCAACTTTGCAGTGTTCATA+AGG | + | chr4_3:1786508-1786527 | None:intergenic | 40.0% | |
| CCTTATGAACACTGCAAAGT+TGG | - | chr4_3:1786505-1786524 | Msa0623970:intron | 40.0% | |
| TATGAACACTGCAAAGTTGG+TGG | - | chr4_3:1786508-1786527 | Msa0623970:intron | 40.0% | |
| ! | ATGAACACTGCAAAGTTGGT+GGG | - | chr4_3:1786509-1786528 | Msa0623970:intron | 40.0% |
| GTATCATTCTTCCCAACCAT+CGG | + | chr4_3:1786598-1786617 | None:intergenic | 40.0% | |
| TAGACCTTGGTTGAAGTAGT+TGG | - | chr4_3:1786643-1786662 | Msa0623970:intron | 40.0% | |
| AGACCTTGGTTGAAGTAGTT+GGG | - | chr4_3:1786644-1786663 | Msa0623970:intron | 40.0% | |
| AAACCCAACTACTTCAACCA+AGG | + | chr4_3:1786650-1786669 | None:intergenic | 40.0% | |
| GCCAATGATACATCAAACAC+TGG | + | chr4_3:1786904-1786923 | None:intergenic | 40.0% | |
| TTGTAGTTACCGGACAGTAA+AGG | - | chr4_3:1787068-1787087 | Msa0623970:intron | 40.0% | |
| GTTATTGTGCCTTTACTGTC+CGG | + | chr4_3:1787080-1787099 | None:intergenic | 40.0% | |
| CTATCAACGTTTATCCTCCA+TGG | + | chr4_3:1787132-1787151 | None:intergenic | 40.0% | |
| ATGGTGCGCTTTGTCAAAAA+AGG | - | chr4_3:1787217-1787236 | Msa0623970:intron | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr4_3:1787260-1787279 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr4_3:1787316-1787335 | Msa0623970:intron | 40.0% | |
| TCTTCTTCCTCTTCTCTCTT+TGG | - | chr4_3:1787398-1787417 | Msa0623970:intron | 40.0% | |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr4_3:1787444-1787463 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr4_3:1787467-1787486 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr4_3:1787468-1787487 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr4_3:1787520-1787539 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+TGG | - | chr4_3:1787871-1787890 | Msa0623970:intron | 40.0% | |
| CAGTAATTGCAAATGGGGAT+GGG | - | chr4_3:1787872-1787891 | Msa0623970:intron | 40.0% | |
| GTGGTTACGTCTTTGTTACA+TGG | - | chr4_3:1788145-1788164 | Msa0623970:intron | 40.0% | |
| CATCAGCATGCAAGACTATA+TGG | + | chr4_3:1788966-1788985 | None:intergenic | 40.0% | |
| TGAGTAGTTGATTGGAAAGC+TGG | + | chr4_3:1789075-1789094 | None:intergenic | 40.0% | |
| GCTTTCCAATCAACTACTCA+TGG | - | chr4_3:1789075-1789094 | Msa0623970:intron | 40.0% | |
| GAGGCAGTTGTATGACAGAA+GGG | + | chr4_3:1786276-1786295 | None:intergenic | 45.0% | |
| TGAGGCAGTTGTATGACAGA+AGG | + | chr4_3:1786277-1786296 | None:intergenic | 45.0% | |
| CTGTCATACAACTGCCTCAT+CGG | - | chr4_3:1786278-1786297 | Msa0623970:CDS | 45.0% | |
| !! | GCGCAGATGCTGATTTATGA+AGG | - | chr4_3:1786385-1786404 | Msa0623970:CDS | 45.0% |
| ! | TTCGTCAACCATTTTCACGG+AGG | + | chr4_3:1786443-1786462 | None:intergenic | 45.0% |
| !! | TGAACACTGCAAAGTTGGTG+GGG | - | chr4_3:1786510-1786529 | Msa0623970:intron | 45.0% |
| TCATGCTTGCCTTCTTGATC+TGG | + | chr4_3:1786960-1786979 | None:intergenic | 45.0% | |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr4_3:1787275-1787294 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr4_3:1787276-1787295 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr4_3:1787357-1787376 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr4_3:1787358-1787377 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr4_3:1787359-1787378 | None:intergenic | 45.0% | |
| GATCTGTTCAGAAGAGGAAG+AGG | + | chr4_3:1787371-1787390 | None:intergenic | 45.0% | |
| AAGGTCGATCTGTTCAGAAG+AGG | + | chr4_3:1787377-1787396 | None:intergenic | 45.0% | |
| GAGAGAAGAGGAAGAAGAGA+AGG | + | chr4_3:1787396-1787415 | None:intergenic | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr4_3:1787458-1787477 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr4_3:1787487-1787506 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr4_3:1787508-1787527 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr4_3:1787511-1787530 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr4_3:1787517-1787536 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr4_3:1787521-1787540 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr4_3:1787523-1787542 | Msa0623970:intron | 45.0% |
| TTCAACGGAGAGAGAGATAG+CGG | + | chr4_3:1787549-1787568 | None:intergenic | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr4_3:1788031-1788050 | Msa0623970:CDS | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr4_3:1788047-1788066 | None:intergenic | 45.0% | |
| !! | TTGATAGAGGCATTGAGTGG+TGG | - | chr4_3:1788482-1788501 | Msa0623970:intron | 45.0% |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr4_3:1788492-1788511 | Msa0623970:intron | 45.0% |
| ACAGAATTACATCGGGACAC+GGG | + | chr4_3:1788923-1788942 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | + | chr4_3:1788924-1788943 | None:intergenic | 45.0% | |
| TCTCCCCATGAGTAGTTGAT+TGG | + | chr4_3:1789083-1789102 | None:intergenic | 45.0% | |
| CAAAACACAGTCCCAGCTGT+TGG | + | chr4_3:1786470-1786489 | None:intergenic | 50.0% | |
| !! | TGCGTGAAGGTGTTAGAACC+AGG | - | chr4_3:1786563-1786582 | Msa0623970:intron | 50.0% |
| !! | GAAGGTGTTAGAACCAGGCT+CGG | - | chr4_3:1786568-1786587 | Msa0623970:intron | 50.0% |
| CCACATCAGCAGTGGTACAA+AGG | + | chr4_3:1787277-1787296 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr4_3:1787274-1787293 | Msa0623970:intron | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr4_3:1787435-1787454 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr4_3:1787455-1787474 | None:intergenic | 50.0% |
| GCTATCTCTCTCTCCGTTGA+AGG | - | chr4_3:1787548-1787567 | Msa0623970:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr4_3:1788393-1788412 | None:intergenic | 50.0% | |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr4_3:1788488-1788507 | Msa0623970:intron | 50.0% |
| GCGGCCATCTGCTCATAAAA+TGG | + | chr4_3:1788615-1788634 | None:intergenic | 50.0% | |
| CAGAATTACATCGGGACACG+GGG | + | chr4_3:1788922-1788941 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr4_3:1789017-1789036 | Msa0623970:CDS | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr4_3:1789033-1789052 | Msa0623970:intron | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr4_3:1789127-1789146 | Msa0623970:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr4_3:1789128-1789147 | Msa0623970:intron | 50.0% | |
| TTGACGAATGCGCCAACAGC+TGG | - | chr4_3:1786455-1786474 | Msa0623970:intron | 55.0% | |
| TGACGAATGCGCCAACAGCT+GGG | - | chr4_3:1786456-1786475 | Msa0623970:intron | 55.0% | |
| !! | ACTGCAAAGTTGGTGGGGAG+TGG | - | chr4_3:1786515-1786534 | Msa0623970:intron | 55.0% |
| !! | AAGTTGGTGGGGAGTGGAAG+AGG | - | chr4_3:1786521-1786540 | Msa0623970:intron | 55.0% |
| TGGGGAGTGGAAGAGGTTTG+TGG | - | chr4_3:1786528-1786547 | Msa0623970:intron | 55.0% | |
| GGAGTGGAAGAGGTTTGTGG+AGG | - | chr4_3:1786531-1786550 | Msa0623970:intron | 55.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr4_3:1787278-1787297 | Msa0623970:intron | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr4_3:1787279-1787298 | Msa0623970:intron | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr4_3:1787280-1787299 | Msa0623970:intron | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr4_3:1787408-1787427 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr4_3:1787499-1787518 | None:intergenic | 55.0% |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr4_3:1788394-1788413 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr4_3:1789021-1789040 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr4_3:1789131-1789150 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr4_3:1789136-1789155 | Msa0623970:CDS | 55.0% | |
| AGAGGTTTGTGGAGGCTCGC+AGG | - | chr4_3:1786539-1786558 | Msa0623970:intron | 60.0% | |
| TACCCCTGCCACATCAGCAG+TGG | + | chr4_3:1787285-1787304 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr4_3:1787429-1787448 | None:intergenic | 60.0% |
| ! | GAGAGAGAGATAGCGGCCGT+CGG | + | chr4_3:1787542-1787561 | None:intergenic | 60.0% |
| !! | AACCAGGCTCGGTGCTCCGA+TGG | - | chr4_3:1786579-1786598 | Msa0623970:intron | 65.0% |
| !! | AACCATCGGAGCACCGAGCC+TGG | + | chr4_3:1786584-1786603 | None:intergenic | 65.0% |
| !! | AGGCTCGGTGCTCCGATGGT+TGG | - | chr4_3:1786583-1786602 | Msa0623970:intron | 65.0% |
| !! | GGCTCGGTGCTCCGATGGTT+GGG | - | chr4_3:1786584-1786603 | Msa0623970:intron | 65.0% |
| ! | AGAGAGATAGCGGCCGTCGG+AGG | + | chr4_3:1787539-1787558 | None:intergenic | 65.0% |
| GAGGCTCGCAGGCTGCGTGA+AGG | - | chr4_3:1786550-1786569 | Msa0623970:intron | 70.0% | |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr4_3:1787424-1787443 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 1786251 | 1789191 | 1786251 | ID=Msa0623970;Name=Msa0623970 |
| chr4_3 | mRNA | 1786251 | 1789191 | 1786251 | ID=Msa0623970-mRNA-1;Parent=Msa0623970;Name=Msa0623970-mRNA-1;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.25|1|1|4|0|237 |
| chr4_3 | exon | 1789135 | 1789191 | 1789135 | ID=Msa0623970-mRNA-1:exon:490;Parent=Msa0623970-mRNA-1 |
| chr4_3 | exon | 1788812 | 1789051 | 1788812 | ID=Msa0623970-mRNA-1:exon:489;Parent=Msa0623970-mRNA-1 |
| chr4_3 | exon | 1787873 | 1788128 | 1787873 | ID=Msa0623970-mRNA-1:exon:488;Parent=Msa0623970-mRNA-1 |
| chr4_3 | exon | 1786251 | 1786411 | 1786251 | ID=Msa0623970-mRNA-1:exon:487;Parent=Msa0623970-mRNA-1 |
| chr4_3 | CDS | 1789135 | 1789191 | 1789135 | ID=Msa0623970-mRNA-1:cds;Parent=Msa0623970-mRNA-1 |
| chr4_3 | CDS | 1788812 | 1789051 | 1788812 | ID=Msa0623970-mRNA-1:cds;Parent=Msa0623970-mRNA-1 |
| chr4_3 | CDS | 1787873 | 1788128 | 1787873 | ID=Msa0623970-mRNA-1:cds;Parent=Msa0623970-mRNA-1 |
| chr4_3 | CDS | 1786251 | 1786411 | 1786251 | ID=Msa0623970-mRNA-1:cds;Parent=Msa0623970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
