Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791600 | PNY14955.1 | 77.647 | 85 | 7 | 1 | 93 | 165 | 41 | 125 | 3.91e-34 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791600 | sp|Q9SFU0|SC24A_ARATH | 60.000 | 85 | 22 | 1 | 93 | 165 | 604 | 688 | 9.66e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791600 | A0A2K3PI82 | 77.647 | 85 | 7 | 1 | 93 | 165 | 41 | 125 | 1.87e-34 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623970 | Msa0791600 | 0.832756 | 7.881584e-56 | -8.615850e-47 |
| Msa0353190 | Msa0791600 | 0.815862 | 7.436271e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791600 | MtrunA17_Chr7g0271481 | 74.713 | 87 | 10 | 1 | 93 | 167 | 586 | 672 | 1.20e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791600 | AT3G07100.1 | 60.000 | 85 | 22 | 1 | 93 | 165 | 604 | 688 | 9.82e-28 | 108 |
Find 45 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTTCCTCTTCTCTCTT+TGG | 0.198959 | 5_3:-2608304 | Msa0791600:CDS |
| TTTCGTAGTTTCATGCAATA+AGG | 0.276286 | 5_3:-2608396 | Msa0791600:intron |
| AGAAATTAAGTCATGAATTA+AGG | 0.286247 | 5_3:-2606601 | Msa0791600:CDS |
| TGCTCATAAAATGGATCTTC+AGG | 0.293277 | 5_3:+2607098 | None:intergenic |
| GCAGCCATCTGCTCATAAAA+TGG | 0.311495 | 5_3:+2607089 | None:intergenic |
| GAAATACATTTACTGAGATT+TGG | 0.330837 | 5_3:+2607051 | None:intergenic |
| TTCGTAGTTTCATGCAATAA+GGG | 0.338966 | 5_3:-2608395 | Msa0791600:intron |
| TCATGCAATAAGGGGTAGTT+TGG | 0.383533 | 5_3:-2608386 | Msa0791600:CDS |
| GGAGGAAATGGCGGAGAGAA+AGG | 0.391973 | 5_3:+2608206 | None:intergenic |
| GAGGAAGAGGAGAAGATTGT+GGG | 0.417711 | 5_3:+2608347 | None:intergenic |
| TCCTGTCTGTGTAGGAACTC+TGG | 0.429146 | 5_3:-2606684 | Msa0791600:intron |
| GATTCGATAGTGGGAGTTGA+TGG | 0.434722 | 5_3:+2608247 | None:intergenic |
| AGAGGAAGAGGAGAAGATTG+TGG | 0.438705 | 5_3:+2608346 | None:intergenic |
| TCTCCCCATGAGTAGCTGAT+TGG | 0.442822 | 5_3:+2606621 | None:intergenic |
| AAGGAGTTGTGATTCGATAG+TGG | 0.447701 | 5_3:+2608237 | None:intergenic |
| GCTATCTATCTCTCCGTTGA+AGG | 0.459483 | 5_3:-2608154 | Msa0791600:intron |
| TGAGTAGCTGATTGGAAAGC+TGG | 0.469035 | 5_3:+2606629 | None:intergenic |
| GGAGAGAAAGGTAGTGATGA+AGG | 0.472251 | 5_3:+2608218 | None:intergenic |
| GCCAAAGAGAGAAGAGGAAG+AGG | 0.486593 | 5_3:+2608303 | None:intergenic |
| GATCTGTTCAGAAGAGGAAG+AGG | 0.522354 | 5_3:+2608334 | None:intergenic |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | 5_3:-2606565 | Msa0791600:CDS |
| AGGAGTTGTGATTCGATAGT+GGG | 0.525623 | 5_3:+2608238 | None:intergenic |
| GCTTTCCAATCAGCTACTCA+TGG | 0.528786 | 5_3:-2606626 | Msa0791600:CDS |
| GAGAGAAGAGGAAGAGGAGA+AGG | 0.536133 | 5_3:+2608309 | None:intergenic |
| CTTTCCAATCAGCTACTCAT+GGG | 0.542155 | 5_3:-2606625 | Msa0791600:CDS |
| AGGAAGAGGAGAAGATTGTG+GGG | 0.551082 | 5_3:+2608348 | None:intergenic |
| GAGATAAACATCACCTTCAA+CGG | 0.555458 | 5_3:+2608141 | None:intergenic |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | 5_3:-2606574 | Msa0791600:CDS |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | 5_3:-2606668 | Msa0791600:CDS |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | 5_3:+2606573 | None:intergenic |
| AAGGTCGATCTGTTCAGAAG+AGG | 0.603567 | 5_3:+2608328 | None:intergenic |
| AGGTGATAGAACGGCATCGA+CGG | 0.606312 | 5_3:+2608270 | None:intergenic |
| GGTGAGGCCAAAGAGAGAAG+AGG | 0.609874 | 5_3:+2608297 | None:intergenic |
| AGATAGATAGCGGCCGTCGG+AGG | 0.610436 | 5_3:+2608166 | None:intergenic |
| TCGTAGTTTCATGCAATAAG+GGG | 0.611679 | 5_3:-2608394 | Msa0791600:intron |
| CGGCATCGACGGCGACGGTG+AGG | 0.630356 | 5_3:+2608281 | None:intergenic |
| TCGATAGTGGGAGTTGATGG+AGG | 0.634300 | 5_3:+2608250 | None:intergenic |
| TTTGGGACAGATAAAGAACA+TGG | 0.635621 | 5_3:-2607131 | Msa0791600:intron |
| GAGAGATAGATAGCGGCCGT+CGG | 0.644322 | 5_3:+2608163 | None:intergenic |
| TAGAACGGCATCGACGGCGA+CGG | 0.644886 | 5_3:+2608276 | None:intergenic |
| AAAAGAGTGGGAGGAAATGG+CGG | 0.653303 | 5_3:+2608197 | None:intergenic |
| AGTTGATGGAGGTGATAGAA+CGG | 0.656286 | 5_3:+2608261 | None:intergenic |
| TTTCCAATCAGCTACTCATG+GGG | 0.686768 | 5_3:-2606624 | Msa0791600:CDS |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | 5_3:-2606573 | Msa0791600:CDS |
| TTCAACGGAGAGATAGATAG+CGG | 0.705647 | 5_3:+2608156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATAAACAATGTACA+TGG | - | chr5_3:2606705-2606724 | Msa0791600:intron | 15.0% |
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr5_3:2607160-2607179 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr5_3:2607187-2607206 | Msa0791600:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr5_3:2607188-2607207 | Msa0791600:intron | 15.0% |
| !! | AATTTAATAAACAATGTACA+TGG | - | chr5_3:2606705-2606724 | Msa0791600:intron | 15.0% |
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr5_3:2607160-2607179 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr5_3:2607187-2607206 | Msa0791600:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr5_3:2607188-2607207 | Msa0791600:intron | 15.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr5_3:2607083-2607102 | Msa0791600:CDS | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr5_3:2607581-2607600 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr5_3:2607581-2607600 | Msa0791600:intron | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr5_3:2607701-2607720 | Msa0791600:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr5_3:2607869-2607888 | Msa0791600:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr5_3:2608190-2608209 | None:intergenic | 20.0% |
| !! | AGAAATTAAGTCATGAATTA+AGG | - | chr5_3:2608608-2608627 | Msa0791600:intron | 20.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr5_3:2607083-2607102 | Msa0791600:CDS | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr5_3:2607581-2607600 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr5_3:2607581-2607600 | Msa0791600:intron | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr5_3:2607701-2607720 | Msa0791600:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr5_3:2607869-2607888 | Msa0791600:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr5_3:2608190-2608209 | None:intergenic | 20.0% |
| !! | AGAAATTAAGTCATGAATTA+AGG | - | chr5_3:2608608-2608627 | Msa0791600:intron | 20.0% |
| !!! | TACTGATTTAGTGAGAATTT+TGG | - | chr5_3:2607216-2607235 | Msa0791600:intron | 25.0% |
| !!! | ACTGATTTAGTGAGAATTTT+GGG | - | chr5_3:2607217-2607236 | Msa0791600:intron | 25.0% |
| !!! | ATTTTGGGTTAAATCAATCT+TGG | - | chr5_3:2607232-2607251 | Msa0791600:intron | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr5_3:2607373-2607392 | Msa0791600:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr5_3:2607421-2607440 | Msa0791600:intron | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr5_3:2607634-2607653 | Msa0791600:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr5_3:2607764-2607783 | Msa0791600:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr5_3:2607846-2607865 | Msa0791600:intron | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr5_3:2607924-2607943 | None:intergenic | 25.0% |
| ! | GATATTTGTGTAATTGATAG+AGG | - | chr5_3:2607977-2607996 | Msa0791600:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr5_3:2608038-2608057 | None:intergenic | 25.0% |
| ! | GAAATACATTTACTGAGATT+TGG | + | chr5_3:2608161-2608180 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr5_3:2608206-2608225 | None:intergenic | 25.0% |
| !!! | TACTGATTTAGTGAGAATTT+TGG | - | chr5_3:2607216-2607235 | Msa0791600:intron | 25.0% |
| !!! | ACTGATTTAGTGAGAATTTT+GGG | - | chr5_3:2607217-2607236 | Msa0791600:intron | 25.0% |
| !!! | ATTTTGGGTTAAATCAATCT+TGG | - | chr5_3:2607232-2607251 | Msa0791600:intron | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr5_3:2607373-2607392 | Msa0791600:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr5_3:2607421-2607440 | Msa0791600:intron | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr5_3:2607634-2607653 | Msa0791600:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr5_3:2607764-2607783 | Msa0791600:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr5_3:2607846-2607865 | Msa0791600:intron | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr5_3:2607924-2607943 | None:intergenic | 25.0% |
| ! | GATATTTGTGTAATTGATAG+AGG | - | chr5_3:2607977-2607996 | Msa0791600:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr5_3:2608038-2608057 | None:intergenic | 25.0% |
| ! | GAAATACATTTACTGAGATT+TGG | + | chr5_3:2608161-2608180 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr5_3:2608206-2608225 | None:intergenic | 25.0% |
| TCACTTACTATTGTAGTTAC+CGG | - | chr5_3:2606565-2606584 | Msa0791600:CDS | 30.0% | |
| TTTCGTAGTTTCATGCAATA+AGG | - | chr5_3:2606813-2606832 | Msa0791600:intron | 30.0% | |
| TTCGTAGTTTCATGCAATAA+GGG | - | chr5_3:2606814-2606833 | Msa0791600:intron | 30.0% | |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr5_3:2607089-2607108 | Msa0791600:CDS | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr5_3:2607310-2607329 | Msa0791600:intron | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr5_3:2607343-2607362 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr5_3:2607372-2607391 | Msa0791600:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr5_3:2607374-2607393 | Msa0791600:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr5_3:2607603-2607622 | Msa0791600:intron | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr5_3:2607621-2607640 | Msa0791600:intron | 30.0% |
| AAAATTCATATGCAATGGCA+AGG | + | chr5_3:2607919-2607938 | None:intergenic | 30.0% | |
| GTGTTGAACTTATAGTGTAT+TGG | - | chr5_3:2608047-2608066 | Msa0791600:intron | 30.0% | |
| !! | AGTGTATTGGTGTATTGATT+TGG | - | chr5_3:2608060-2608079 | Msa0791600:intron | 30.0% |
| !! | GTGTATTGGTGTATTGATTT+GGG | - | chr5_3:2608061-2608080 | Msa0791600:intron | 30.0% |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr5_3:2608228-2608247 | Msa0791600:CDS | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr5_3:2608266-2608285 | Msa0791600:CDS | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr5_3:2608309-2608328 | Msa0791600:CDS | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr5_3:2608439-2608458 | None:intergenic | 30.0% | |
| TCACTTACTATTGTAGTTAC+CGG | - | chr5_3:2606565-2606584 | Msa0791600:CDS | 30.0% | |
| TTTCGTAGTTTCATGCAATA+AGG | - | chr5_3:2606813-2606832 | Msa0791600:intron | 30.0% | |
| TTCGTAGTTTCATGCAATAA+GGG | - | chr5_3:2606814-2606833 | Msa0791600:intron | 30.0% | |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr5_3:2607089-2607108 | Msa0791600:CDS | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr5_3:2607310-2607329 | Msa0791600:intron | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr5_3:2607343-2607362 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr5_3:2607372-2607391 | Msa0791600:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr5_3:2607374-2607393 | Msa0791600:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr5_3:2607603-2607622 | Msa0791600:intron | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr5_3:2607621-2607640 | Msa0791600:intron | 30.0% |
| AAAATTCATATGCAATGGCA+AGG | + | chr5_3:2607919-2607938 | None:intergenic | 30.0% | |
| GTGTTGAACTTATAGTGTAT+TGG | - | chr5_3:2608047-2608066 | Msa0791600:intron | 30.0% | |
| !! | AGTGTATTGGTGTATTGATT+TGG | - | chr5_3:2608060-2608079 | Msa0791600:intron | 30.0% |
| !! | GTGTATTGGTGTATTGATTT+GGG | - | chr5_3:2608061-2608080 | Msa0791600:intron | 30.0% |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr5_3:2608228-2608247 | Msa0791600:CDS | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr5_3:2608266-2608285 | Msa0791600:CDS | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr5_3:2608309-2608328 | Msa0791600:CDS | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr5_3:2608439-2608458 | None:intergenic | 30.0% | |
| GAGTAATAAAGTGATAGCCA+TGG | - | chr5_3:2606619-2606638 | Msa0791600:CDS | 35.0% | |
| TAATAAAGTGATAGCCATGG+AGG | - | chr5_3:2606622-2606641 | Msa0791600:CDS | 35.0% | |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr5_3:2606768-2606787 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr5_3:2606769-2606788 | None:intergenic | 35.0% |
| TCGTAGTTTCATGCAATAAG+GGG | - | chr5_3:2606815-2606834 | Msa0791600:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr5_3:2607071-2607090 | None:intergenic | 35.0% | |
| ! | GATGGGATGATAATTTGTGT+TGG | - | chr5_3:2607396-2607415 | Msa0791600:intron | 35.0% |
| AAGAGAGACTAAATGATTGG+AGG | + | chr5_3:2607524-2607543 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr5_3:2607527-2607546 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr5_3:2607524-2607543 | Msa0791600:intron | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr5_3:2607721-2607740 | None:intergenic | 35.0% | |
| !! | TAATTGATAGAGGCATTGAG+TGG | - | chr5_3:2607987-2608006 | Msa0791600:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr5_3:2608078-2608097 | Msa0791600:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr5_3:2608114-2608133 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr5_3:2608116-2608135 | Msa0791600:intron | 35.0% |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr5_3:2608265-2608284 | Msa0791600:CDS | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr5_3:2608330-2608349 | Msa0791600:CDS | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr5_3:2608438-2608457 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr5_3:2608440-2608459 | Msa0791600:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr5_3:2608517-2608536 | Msa0791600:intron | 35.0% |
| GAGTAATAAAGTGATAGCCA+TGG | - | chr5_3:2606619-2606638 | Msa0791600:CDS | 35.0% | |
| TAATAAAGTGATAGCCATGG+AGG | - | chr5_3:2606622-2606641 | Msa0791600:CDS | 35.0% | |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr5_3:2606768-2606787 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr5_3:2606769-2606788 | None:intergenic | 35.0% |
| TCGTAGTTTCATGCAATAAG+GGG | - | chr5_3:2606815-2606834 | Msa0791600:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr5_3:2607071-2607090 | None:intergenic | 35.0% | |
| ! | GATGGGATGATAATTTGTGT+TGG | - | chr5_3:2607396-2607415 | Msa0791600:intron | 35.0% |
| AAGAGAGACTAAATGATTGG+AGG | + | chr5_3:2607524-2607543 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr5_3:2607527-2607546 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr5_3:2607524-2607543 | Msa0791600:intron | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr5_3:2607721-2607740 | None:intergenic | 35.0% | |
| !! | TAATTGATAGAGGCATTGAG+TGG | - | chr5_3:2607987-2608006 | Msa0791600:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr5_3:2608078-2608097 | Msa0791600:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr5_3:2608114-2608133 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr5_3:2608116-2608135 | Msa0791600:intron | 35.0% |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr5_3:2608265-2608284 | Msa0791600:CDS | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr5_3:2608330-2608349 | Msa0791600:CDS | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr5_3:2608438-2608457 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr5_3:2608440-2608459 | Msa0791600:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr5_3:2608517-2608536 | Msa0791600:intron | 35.0% |
| TTGTAGTTACCGGACAGTAA+AGG | - | chr5_3:2606575-2606594 | Msa0791600:CDS | 40.0% | |
| GTTATTGTGCCTTTACTGTC+CGG | + | chr5_3:2606587-2606606 | None:intergenic | 40.0% | |
| CTATCAACGTTTATCCTCCA+TGG | + | chr5_3:2606639-2606658 | None:intergenic | 40.0% | |
| ATGGTGCGCTTTGTCAAAAA+AGG | - | chr5_3:2606724-2606743 | Msa0791600:intron | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr5_3:2606767-2606786 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr5_3:2606823-2606842 | Msa0791600:intron | 40.0% | |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr5_3:2606951-2606970 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr5_3:2606974-2606993 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr5_3:2606975-2606994 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr5_3:2607027-2607046 | None:intergenic | 40.0% | |
| TTCAACGGAGAGATAGATAG+CGG | + | chr5_3:2607056-2607075 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+TGG | - | chr5_3:2607378-2607397 | Msa0791600:intron | 40.0% | |
| CAGTAATTGCAAATGGGGAT+GGG | - | chr5_3:2607379-2607398 | Msa0791600:intron | 40.0% | |
| GTGGTTACGTCTTTGTTACA+TGG | - | chr5_3:2607653-2607672 | Msa0791600:intron | 40.0% | |
| CATCAGCATGCAAGACTATA+TGG | + | chr5_3:2608474-2608493 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCTACTCAT+GGG | - | chr5_3:2608584-2608603 | Msa0791600:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | chr5_3:2608585-2608604 | Msa0791600:intron | 40.0% | |
| TTGTAGTTACCGGACAGTAA+AGG | - | chr5_3:2606575-2606594 | Msa0791600:CDS | 40.0% | |
| GTTATTGTGCCTTTACTGTC+CGG | + | chr5_3:2606587-2606606 | None:intergenic | 40.0% | |
| CTATCAACGTTTATCCTCCA+TGG | + | chr5_3:2606639-2606658 | None:intergenic | 40.0% | |
| ATGGTGCGCTTTGTCAAAAA+AGG | - | chr5_3:2606724-2606743 | Msa0791600:intron | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr5_3:2606767-2606786 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr5_3:2606823-2606842 | Msa0791600:intron | 40.0% | |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr5_3:2606951-2606970 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr5_3:2606974-2606993 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr5_3:2606975-2606994 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr5_3:2607027-2607046 | None:intergenic | 40.0% | |
| TTCAACGGAGAGATAGATAG+CGG | + | chr5_3:2607056-2607075 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+TGG | - | chr5_3:2607378-2607397 | Msa0791600:intron | 40.0% | |
| CAGTAATTGCAAATGGGGAT+GGG | - | chr5_3:2607379-2607398 | Msa0791600:intron | 40.0% | |
| GTGGTTACGTCTTTGTTACA+TGG | - | chr5_3:2607653-2607672 | Msa0791600:intron | 40.0% | |
| CATCAGCATGCAAGACTATA+TGG | + | chr5_3:2608474-2608493 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCTACTCAT+GGG | - | chr5_3:2608584-2608603 | Msa0791600:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | chr5_3:2608585-2608604 | Msa0791600:intron | 40.0% | |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr5_3:2606782-2606801 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr5_3:2606783-2606802 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr5_3:2606864-2606883 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr5_3:2606865-2606884 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr5_3:2606866-2606885 | None:intergenic | 45.0% | |
| GATCTGTTCAGAAGAGGAAG+AGG | + | chr5_3:2606878-2606897 | None:intergenic | 45.0% | |
| AAGGTCGATCTGTTCAGAAG+AGG | + | chr5_3:2606884-2606903 | None:intergenic | 45.0% | |
| TCCTCTTCCTCTTCTCTCTT+TGG | - | chr5_3:2606905-2606924 | Msa0791600:intron | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr5_3:2606965-2606984 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr5_3:2606994-2607013 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr5_3:2607015-2607034 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr5_3:2607018-2607037 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr5_3:2607024-2607043 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr5_3:2607028-2607047 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr5_3:2607030-2607049 | Msa0791600:intron | 45.0% |
| GCTATCTATCTCTCCGTTGA+AGG | - | chr5_3:2607055-2607074 | Msa0791600:CDS | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr5_3:2607539-2607558 | Msa0791600:intron | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr5_3:2607555-2607574 | None:intergenic | 45.0% | |
| !! | TTGATAGAGGCATTGAGTGG+TGG | - | chr5_3:2607990-2608009 | Msa0791600:intron | 45.0% |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr5_3:2608000-2608019 | Msa0791600:intron | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | chr5_3:2608123-2608142 | None:intergenic | 45.0% | |
| CAGAATTACATCGGGACACA+GGG | + | chr5_3:2608430-2608449 | None:intergenic | 45.0% | |
| ACAGAATTACATCGGGACAC+AGG | + | chr5_3:2608431-2608450 | None:intergenic | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | chr5_3:2608583-2608602 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | chr5_3:2608583-2608602 | Msa0791600:intron | 45.0% | |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr5_3:2606782-2606801 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr5_3:2606783-2606802 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr5_3:2606864-2606883 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr5_3:2606865-2606884 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr5_3:2606866-2606885 | None:intergenic | 45.0% | |
| GATCTGTTCAGAAGAGGAAG+AGG | + | chr5_3:2606878-2606897 | None:intergenic | 45.0% | |
| AAGGTCGATCTGTTCAGAAG+AGG | + | chr5_3:2606884-2606903 | None:intergenic | 45.0% | |
| TCCTCTTCCTCTTCTCTCTT+TGG | - | chr5_3:2606905-2606924 | Msa0791600:intron | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr5_3:2606965-2606984 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr5_3:2606994-2607013 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr5_3:2607015-2607034 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr5_3:2607018-2607037 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr5_3:2607024-2607043 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr5_3:2607028-2607047 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr5_3:2607030-2607049 | Msa0791600:intron | 45.0% |
| GCTATCTATCTCTCCGTTGA+AGG | - | chr5_3:2607055-2607074 | Msa0791600:CDS | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr5_3:2607539-2607558 | Msa0791600:intron | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr5_3:2607555-2607574 | None:intergenic | 45.0% | |
| !! | TTGATAGAGGCATTGAGTGG+TGG | - | chr5_3:2607990-2608009 | Msa0791600:intron | 45.0% |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr5_3:2608000-2608019 | Msa0791600:intron | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | chr5_3:2608123-2608142 | None:intergenic | 45.0% | |
| CAGAATTACATCGGGACACA+GGG | + | chr5_3:2608430-2608449 | None:intergenic | 45.0% | |
| ACAGAATTACATCGGGACAC+AGG | + | chr5_3:2608431-2608450 | None:intergenic | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | chr5_3:2608583-2608602 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | chr5_3:2608583-2608602 | Msa0791600:intron | 45.0% | |
| CCACATCAGCAGTGGTACAA+AGG | + | chr5_3:2606784-2606803 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr5_3:2606781-2606800 | Msa0791600:intron | 50.0% | |
| GAGAGAAGAGGAAGAGGAGA+AGG | + | chr5_3:2606903-2606922 | None:intergenic | 50.0% | |
| GCCAAAGAGAGAAGAGGAAG+AGG | + | chr5_3:2606909-2606928 | None:intergenic | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr5_3:2606942-2606961 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr5_3:2606962-2606981 | None:intergenic | 50.0% |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr5_3:2607901-2607920 | None:intergenic | 50.0% | |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr5_3:2607996-2608015 | Msa0791600:intron | 50.0% |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr5_3:2608525-2608544 | Msa0791600:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr5_3:2608541-2608560 | Msa0791600:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | chr5_3:2608591-2608610 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr5_3:2608635-2608654 | Msa0791600:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr5_3:2608636-2608655 | Msa0791600:intron | 50.0% | |
| CCACATCAGCAGTGGTACAA+AGG | + | chr5_3:2606784-2606803 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr5_3:2606781-2606800 | Msa0791600:intron | 50.0% | |
| GAGAGAAGAGGAAGAGGAGA+AGG | + | chr5_3:2606903-2606922 | None:intergenic | 50.0% | |
| GCCAAAGAGAGAAGAGGAAG+AGG | + | chr5_3:2606909-2606928 | None:intergenic | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr5_3:2606942-2606961 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr5_3:2606962-2606981 | None:intergenic | 50.0% |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr5_3:2607901-2607920 | None:intergenic | 50.0% | |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr5_3:2607996-2608015 | Msa0791600:intron | 50.0% |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr5_3:2608525-2608544 | Msa0791600:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr5_3:2608541-2608560 | Msa0791600:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | chr5_3:2608591-2608610 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr5_3:2608635-2608654 | Msa0791600:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr5_3:2608636-2608655 | Msa0791600:intron | 50.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr5_3:2606785-2606804 | Msa0791600:intron | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr5_3:2606786-2606805 | Msa0791600:intron | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr5_3:2606787-2606806 | Msa0791600:intron | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr5_3:2606915-2606934 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr5_3:2607006-2607025 | None:intergenic | 55.0% |
| ! | GAGAGATAGATAGCGGCCGT+CGG | + | chr5_3:2607049-2607068 | None:intergenic | 55.0% |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr5_3:2607902-2607921 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr5_3:2608529-2608548 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr5_3:2608639-2608658 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr5_3:2608644-2608663 | Msa0791600:intron | 55.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr5_3:2606785-2606804 | Msa0791600:intron | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr5_3:2606786-2606805 | Msa0791600:intron | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr5_3:2606787-2606806 | Msa0791600:intron | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr5_3:2606915-2606934 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr5_3:2607006-2607025 | None:intergenic | 55.0% |
| ! | GAGAGATAGATAGCGGCCGT+CGG | + | chr5_3:2607049-2607068 | None:intergenic | 55.0% |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr5_3:2607902-2607921 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr5_3:2608529-2608548 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr5_3:2608639-2608658 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr5_3:2608644-2608663 | Msa0791600:intron | 55.0% | |
| TACCCCTGCCACATCAGCAG+TGG | + | chr5_3:2606792-2606811 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr5_3:2606936-2606955 | None:intergenic | 60.0% |
| ! | AGATAGATAGCGGCCGTCGG+AGG | + | chr5_3:2607046-2607065 | None:intergenic | 60.0% |
| TACCCCTGCCACATCAGCAG+TGG | + | chr5_3:2606792-2606811 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr5_3:2606936-2606955 | None:intergenic | 60.0% |
| ! | AGATAGATAGCGGCCGTCGG+AGG | + | chr5_3:2607046-2607065 | None:intergenic | 60.0% |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr5_3:2606931-2606950 | None:intergenic | 75.0% |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr5_3:2606931-2606950 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2606532 | 2608699 | 2606532 | ID=Msa0791600;Name=Msa0791600 |
| chr5_3 | mRNA | 2606532 | 2608699 | 2606532 | ID=Msa0791600-mRNA-1;Parent=Msa0791600;Name=Msa0791600-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|1|1|4|0|176 |
| chr5_3 | exon | 2608679 | 2608699 | 2608679 | ID=Msa0791600-mRNA-1:exon:1125;Parent=Msa0791600-mRNA-1 |
| chr5_3 | exon | 2608155 | 2608410 | 2608155 | ID=Msa0791600-mRNA-1:exon:1124;Parent=Msa0791600-mRNA-1 |
| chr5_3 | exon | 2607051 | 2607143 | 2607051 | ID=Msa0791600-mRNA-1:exon:1123;Parent=Msa0791600-mRNA-1 |
| chr5_3 | exon | 2606532 | 2606692 | 2606532 | ID=Msa0791600-mRNA-1:exon:1122;Parent=Msa0791600-mRNA-1 |
| chr5_3 | CDS | 2608679 | 2608699 | 2608679 | ID=Msa0791600-mRNA-1:cds;Parent=Msa0791600-mRNA-1 |
| chr5_3 | CDS | 2608155 | 2608410 | 2608155 | ID=Msa0791600-mRNA-1:cds;Parent=Msa0791600-mRNA-1 |
| chr5_3 | CDS | 2607051 | 2607143 | 2607051 | ID=Msa0791600-mRNA-1:cds;Parent=Msa0791600-mRNA-1 |
| chr5_3 | CDS | 2606532 | 2606692 | 2606532 | ID=Msa0791600-mRNA-1:cds;Parent=Msa0791600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
