Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625040 | XP_003604167.1 | 93.789 | 161 | 6 | 1 | 1 | 157 | 155 | 315 | 3.37e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625040 | sp|Q9LU39|GLUBP_ARATH | 63.924 | 158 | 54 | 1 | 1 | 155 | 148 | 305 | 8.72e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625040 | G7JVM7 | 93.789 | 161 | 6 | 1 | 1 | 157 | 155 | 315 | 1.61e-104 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0585440 | Msa0625040 | 0.840291 | 9.500804e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625040 | MtrunA17_Chr4g0000861 | 93.789 | 161 | 6 | 1 | 1 | 157 | 155 | 315 | 3.10e-108 | 311 |
| Msa0625040 | MtrunA17_Chr3g0077841 | 83.333 | 36 | 6 | 0 | 69 | 104 | 1 | 36 | 1.64e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625040 | AT3G21200.1 | 63.924 | 158 | 54 | 1 | 1 | 155 | 148 | 305 | 8.86e-72 | 218 |
Find 35 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAATGTCTTCCATATTAT+TGG | 0.225630 | 4_3:+4010442 | None:intergenic |
| CTATGTTGATTTGGATTTCC+AGG | 0.294434 | 4_3:-4010405 | Msa0625040:intron |
| TGAAATTAACACCAATAATA+TGG | 0.307435 | 4_3:-4010453 | Msa0625040:CDS |
| TCACAGAAGCAAAGATGATA+TGG | 0.313832 | 4_3:-4010068 | Msa0625040:CDS |
| TGTATATTATTGCTGTAGAT+AGG | 0.315510 | 4_3:-4010727 | Msa0625040:CDS |
| GCTGCACTTGGATGACTTCC+AGG | 0.317388 | 4_3:-4010702 | Msa0625040:CDS |
| ATGGGTAGACCGTTTGGGTT+TGG | 0.369113 | 4_3:-4010049 | Msa0625040:CDS |
| TTGTAATGTCTATGTTGATT+TGG | 0.370501 | 4_3:-4010414 | Msa0625040:CDS |
| ATTTAACTGTATGTCACAAT+TGG | 0.386834 | 4_3:-4009936 | Msa0625040:CDS |
| AGAGAAGTCACAGATGAAAA+AGG | 0.391076 | 4_3:-4009971 | Msa0625040:CDS |
| CACAGCGGCTTGTTTCTTTG+TGG | 0.392329 | 4_3:-4010787 | None:intergenic |
| GATGATATGGGTAGACCGTT+TGG | 0.397685 | 4_3:-4010055 | Msa0625040:CDS |
| ATGATATGGGTAGACCGTTT+GGG | 0.415103 | 4_3:-4010054 | Msa0625040:CDS |
| TCTTTGTGGAAGAAGAGGTT+TGG | 0.434962 | 4_3:-4010773 | Msa0625040:CDS |
| ACTGTATGTCACAATTGGCT+TGG | 0.444223 | 4_3:-4009931 | Msa0625040:CDS |
| CTGTATGTCACAATTGGCTT+GGG | 0.450082 | 4_3:-4009930 | Msa0625040:CDS |
| AGAAAGAAACTTCCATCCTC+TGG | 0.456228 | 4_3:-4009903 | Msa0625040:CDS |
| TGTAGATAGGGTGCTGCACT+TGG | 0.473744 | 4_3:-4010714 | Msa0625040:CDS |
| ACCTCAAATAAACCGTTGTT+AGG | 0.493427 | 4_3:+4010010 | None:intergenic |
| GTATATTATTGCTGTAGATA+GGG | 0.518730 | 4_3:-4010726 | Msa0625040:CDS |
| TTTCATCTGTGACTTCTCTA+GGG | 0.522593 | 4_3:+4009975 | None:intergenic |
| CATACAGTTAAATGTTGACT+TGG | 0.529692 | 4_3:+4009946 | None:intergenic |
| CCTTCTCAAAATCCAGAGGA+TGG | 0.550636 | 4_3:+4009891 | None:intergenic |
| TTGTTTCTTTGTGGAAGAAG+AGG | 0.550656 | 4_3:-4010778 | Msa0625040:CDS |
| CACAGAAGCAAAGATGATAT+GGG | 0.552316 | 4_3:-4010067 | Msa0625040:CDS |
| AACGCATATCCAAACCCAAA+CGG | 0.555598 | 4_3:+4010040 | None:intergenic |
| AATTCTCAGCAAACTCTCGA+AGG | 0.558854 | 4_3:+4010483 | None:intergenic |
| ATTCTCAGCAAACTCTCGAA+GGG | 0.571271 | 4_3:+4010484 | None:intergenic |
| TCTGTGACTTCTCTAGGGAA+AGG | 0.588455 | 4_3:+4009980 | None:intergenic |
| TATGTCACAATTGGCTTGGG+AGG | 0.603045 | 4_3:-4009927 | Msa0625040:CDS |
| TTCTCAGCAAACTCTCGAAG+GGG | 0.632254 | 4_3:+4010485 | None:intergenic |
| CTTCTCTAGGGAAAGGAATG+CGG | 0.641717 | 4_3:+4009987 | None:intergenic |
| TCTCAGCAAACTCTCGAAGG+GGG | 0.641945 | 4_3:+4010486 | None:intergenic |
| GTAACCTTCTCAAAATCCAG+AGG | 0.672238 | 4_3:+4009887 | None:intergenic |
| GCACTTGGATGACTTCCAGG+AGG | 0.711976 | 4_3:-4010699 | Msa0625040:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGATAACAAATAAATAAAAA+TGG | + | chr4_3:4010316-4010335 | None:intergenic | 15.0% |
| !! | AAATTCTATGTAAATAAATC+AGG | + | chr4_3:4010357-4010376 | None:intergenic | 15.0% |
| !! | TTATTTACATAGAATTTAAC+TGG | - | chr4_3:4010360-4010379 | Msa0625040:intron | 15.0% |
| !! | GGATAACAAATAAATAAAAA+TGG | + | chr4_3:4010316-4010335 | None:intergenic | 15.0% |
| !! | AAATTCTATGTAAATAAATC+AGG | + | chr4_3:4010357-4010376 | None:intergenic | 15.0% |
| !! | TTATTTACATAGAATTTAAC+TGG | - | chr4_3:4010360-4010379 | Msa0625040:intron | 15.0% |
| !!! | AGTTGTTTTGTTATATAAGT+TGG | - | chr4_3:4010069-4010088 | Msa0625040:CDS | 20.0% |
| !! | TGAAATTAACACCAATAATA+TGG | - | chr4_3:4010191-4010210 | Msa0625040:intron | 20.0% |
| !!! | AGTTGTTTTGTTATATAAGT+TGG | - | chr4_3:4010069-4010088 | Msa0625040:CDS | 20.0% |
| !! | TGAAATTAACACCAATAATA+TGG | - | chr4_3:4010191-4010210 | Msa0625040:intron | 20.0% |
| ! | TGTATATTATTGCTGTAGAT+AGG | - | chr4_3:4009917-4009936 | Msa0625040:CDS | 25.0% |
| ! | GTATATTATTGCTGTAGATA+GGG | - | chr4_3:4009918-4009937 | Msa0625040:CDS | 25.0% |
| ! | TTTAATAAAAATGAAGGGTC+AGG | + | chr4_3:4009978-4009997 | None:intergenic | 25.0% |
| ! | TTGCTGATACTAATTGTAAT+AGG | - | chr4_3:4010023-4010042 | Msa0625040:CDS | 25.0% |
| ! | ATATAACAAAACAACTTGCA+AGG | + | chr4_3:4010065-4010084 | None:intergenic | 25.0% |
| ! | AGTAATGTCTTCCATATTAT+TGG | + | chr4_3:4010205-4010224 | None:intergenic | 25.0% |
| !! | TTGTAATGTCTATGTTGATT+TGG | - | chr4_3:4010230-4010249 | Msa0625040:intron | 25.0% |
| !! | TTGTTATCCTTTGATTTAAC+TGG | - | chr4_3:4010327-4010346 | Msa0625040:intron | 25.0% |
| ! | AGCATTCTTATAAAAATCAC+TGG | - | chr4_3:4010448-4010467 | Msa0625040:CDS | 25.0% |
| ! | GAAGTTAGATTTCTATTTAG+TGG | + | chr4_3:4010484-4010503 | None:intergenic | 25.0% |
| ! | CTAACTTCAAAACAATATTG+AGG | - | chr4_3:4010496-4010515 | Msa0625040:CDS | 25.0% |
| ! | ATTTAACTGTATGTCACAAT+TGG | - | chr4_3:4010708-4010727 | Msa0625040:CDS | 25.0% |
| ! | TGTATATTATTGCTGTAGAT+AGG | - | chr4_3:4009917-4009936 | Msa0625040:CDS | 25.0% |
| ! | GTATATTATTGCTGTAGATA+GGG | - | chr4_3:4009918-4009937 | Msa0625040:CDS | 25.0% |
| ! | TTTAATAAAAATGAAGGGTC+AGG | + | chr4_3:4009978-4009997 | None:intergenic | 25.0% |
| ! | TTGCTGATACTAATTGTAAT+AGG | - | chr4_3:4010023-4010042 | Msa0625040:CDS | 25.0% |
| ! | ATATAACAAAACAACTTGCA+AGG | + | chr4_3:4010065-4010084 | None:intergenic | 25.0% |
| ! | AGTAATGTCTTCCATATTAT+TGG | + | chr4_3:4010205-4010224 | None:intergenic | 25.0% |
| !! | TTGTAATGTCTATGTTGATT+TGG | - | chr4_3:4010230-4010249 | Msa0625040:intron | 25.0% |
| !! | TTGTTATCCTTTGATTTAAC+TGG | - | chr4_3:4010327-4010346 | Msa0625040:intron | 25.0% |
| ! | AGCATTCTTATAAAAATCAC+TGG | - | chr4_3:4010448-4010467 | Msa0625040:CDS | 25.0% |
| ! | GAAGTTAGATTTCTATTTAG+TGG | + | chr4_3:4010484-4010503 | None:intergenic | 25.0% |
| ! | CTAACTTCAAAACAATATTG+AGG | - | chr4_3:4010496-4010515 | Msa0625040:CDS | 25.0% |
| ! | ATTTAACTGTATGTCACAAT+TGG | - | chr4_3:4010708-4010727 | Msa0625040:CDS | 25.0% |
| TATCAGCAAACTAGTAGTAT+AGG | + | chr4_3:4010012-4010031 | None:intergenic | 30.0% | |
| ! | AGCATTTTTGTAGTCTAAAG+AGG | + | chr4_3:4010130-4010149 | None:intergenic | 30.0% |
| AAATGCTGTGTAGATAAATC+AGG | + | chr4_3:4010390-4010409 | None:intergenic | 30.0% | |
| ACACAGCAAAACTAACTTAT+CGG | + | chr4_3:4010523-4010542 | None:intergenic | 30.0% | |
| ! | TGTATTTGATTTCCCATTGT+AGG | - | chr4_3:4010553-4010572 | Msa0625040:intron | 30.0% |
| ! | CATACAGTTAAATGTTGACT+TGG | + | chr4_3:4010701-4010720 | None:intergenic | 30.0% |
| TATCAGCAAACTAGTAGTAT+AGG | + | chr4_3:4010012-4010031 | None:intergenic | 30.0% | |
| ! | AGCATTTTTGTAGTCTAAAG+AGG | + | chr4_3:4010130-4010149 | None:intergenic | 30.0% |
| AAATGCTGTGTAGATAAATC+AGG | + | chr4_3:4010390-4010409 | None:intergenic | 30.0% | |
| ACACAGCAAAACTAACTTAT+CGG | + | chr4_3:4010523-4010542 | None:intergenic | 30.0% | |
| ! | TGTATTTGATTTCCCATTGT+AGG | - | chr4_3:4010553-4010572 | Msa0625040:intron | 30.0% |
| ! | CATACAGTTAAATGTTGACT+TGG | + | chr4_3:4010701-4010720 | None:intergenic | 30.0% |
| ! | TTGTTTCTTTGTGGAAGAAG+AGG | - | chr4_3:4009866-4009885 | Msa0625040:CDS | 35.0% |
| !!! | TATGTCCTTGTTTTTCAGGA+CGG | - | chr4_3:4010093-4010112 | Msa0625040:intron | 35.0% |
| !! | CTATGTTGATTTGGATTTCC+AGG | - | chr4_3:4010239-4010258 | Msa0625040:intron | 35.0% |
| TCACAGAAGCAAAGATGATA+TGG | - | chr4_3:4010576-4010595 | Msa0625040:intron | 35.0% | |
| CACAGAAGCAAAGATGATAT+GGG | - | chr4_3:4010577-4010596 | Msa0625040:intron | 35.0% | |
| TCCTAACAACGGTTTATTTG+AGG | - | chr4_3:4010633-4010652 | Msa0625040:intron | 35.0% | |
| ACCTCAAATAAACCGTTGTT+AGG | + | chr4_3:4010637-4010656 | None:intergenic | 35.0% | |
| TTTCATCTGTGACTTCTCTA+GGG | + | chr4_3:4010672-4010691 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTGACTTCTCT+AGG | + | chr4_3:4010673-4010692 | None:intergenic | 35.0% |
| AGAGAAGTCACAGATGAAAA+AGG | - | chr4_3:4010673-4010692 | Msa0625040:intron | 35.0% | |
| TGAAGCACATAAAGTCATGA+CGG | - | chr4_3:4010785-4010804 | Msa0625040:CDS | 35.0% | |
| ! | TTGTTTCTTTGTGGAAGAAG+AGG | - | chr4_3:4009866-4009885 | Msa0625040:CDS | 35.0% |
| !!! | TATGTCCTTGTTTTTCAGGA+CGG | - | chr4_3:4010093-4010112 | Msa0625040:intron | 35.0% |
| !! | CTATGTTGATTTGGATTTCC+AGG | - | chr4_3:4010239-4010258 | Msa0625040:intron | 35.0% |
| TCACAGAAGCAAAGATGATA+TGG | - | chr4_3:4010576-4010595 | Msa0625040:intron | 35.0% | |
| CACAGAAGCAAAGATGATAT+GGG | - | chr4_3:4010577-4010596 | Msa0625040:intron | 35.0% | |
| TCCTAACAACGGTTTATTTG+AGG | - | chr4_3:4010633-4010652 | Msa0625040:intron | 35.0% | |
| ACCTCAAATAAACCGTTGTT+AGG | + | chr4_3:4010637-4010656 | None:intergenic | 35.0% | |
| TTTCATCTGTGACTTCTCTA+GGG | + | chr4_3:4010672-4010691 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTGACTTCTCT+AGG | + | chr4_3:4010673-4010692 | None:intergenic | 35.0% |
| AGAGAAGTCACAGATGAAAA+AGG | - | chr4_3:4010673-4010692 | Msa0625040:intron | 35.0% | |
| TCTTTGTGGAAGAAGAGGTT+TGG | - | chr4_3:4009871-4009890 | Msa0625040:CDS | 40.0% | |
| !!! | TGGCTATGTCCTTGTTTTTC+AGG | - | chr4_3:4010089-4010108 | Msa0625040:intron | 40.0% |
| ATTCTCAGCAAACTCTCGAA+GGG | + | chr4_3:4010163-4010182 | None:intergenic | 40.0% | |
| AATTCTCAGCAAACTCTCGA+AGG | + | chr4_3:4010164-4010183 | None:intergenic | 40.0% | |
| !! | ATACATGCAGGAAAAGTACC+TGG | + | chr4_3:4010260-4010279 | None:intergenic | 40.0% |
| CATGCTATGTAGATACATGC+AGG | + | chr4_3:4010272-4010291 | None:intergenic | 40.0% | |
| AGGTGCACCAGTTAAATCAA+AGG | + | chr4_3:4010337-4010356 | None:intergenic | 40.0% | |
| TGCATAAATACAGTCACAGC+AGG | + | chr4_3:4010429-4010448 | None:intergenic | 40.0% | |
| TTGCTTCTGTGACCTACAAT+GGG | + | chr4_3:4010568-4010587 | None:intergenic | 40.0% | |
| TTTGCTTCTGTGACCTACAA+TGG | + | chr4_3:4010569-4010588 | None:intergenic | 40.0% | |
| ATGATATGGGTAGACCGTTT+GGG | - | chr4_3:4010590-4010609 | Msa0625040:intron | 40.0% | |
| AACGCATATCCAAACCCAAA+CGG | + | chr4_3:4010607-4010626 | None:intergenic | 40.0% | |
| !! | GCGTTGTTTTCTCCTAACAA+CGG | - | chr4_3:4010622-4010641 | Msa0625040:intron | 40.0% |
| ACTGTATGTCACAATTGGCT+TGG | - | chr4_3:4010713-4010732 | Msa0625040:CDS | 40.0% | |
| ! | CTGTATGTCACAATTGGCTT+GGG | - | chr4_3:4010714-4010733 | Msa0625040:CDS | 40.0% |
| AGAAAGAAACTTCCATCCTC+TGG | - | chr4_3:4010741-4010760 | Msa0625040:CDS | 40.0% | |
| GTAACCTTCTCAAAATCCAG+AGG | + | chr4_3:4010760-4010779 | None:intergenic | 40.0% | |
| TCTTTGTGGAAGAAGAGGTT+TGG | - | chr4_3:4009871-4009890 | Msa0625040:CDS | 40.0% | |
| !!! | TGGCTATGTCCTTGTTTTTC+AGG | - | chr4_3:4010089-4010108 | Msa0625040:intron | 40.0% |
| ATTCTCAGCAAACTCTCGAA+GGG | + | chr4_3:4010163-4010182 | None:intergenic | 40.0% | |
| AATTCTCAGCAAACTCTCGA+AGG | + | chr4_3:4010164-4010183 | None:intergenic | 40.0% | |
| !! | ATACATGCAGGAAAAGTACC+TGG | + | chr4_3:4010260-4010279 | None:intergenic | 40.0% |
| CATGCTATGTAGATACATGC+AGG | + | chr4_3:4010272-4010291 | None:intergenic | 40.0% | |
| AGGTGCACCAGTTAAATCAA+AGG | + | chr4_3:4010337-4010356 | None:intergenic | 40.0% | |
| TGCATAAATACAGTCACAGC+AGG | + | chr4_3:4010429-4010448 | None:intergenic | 40.0% | |
| TTGCTTCTGTGACCTACAAT+GGG | + | chr4_3:4010568-4010587 | None:intergenic | 40.0% | |
| TTTGCTTCTGTGACCTACAA+TGG | + | chr4_3:4010569-4010588 | None:intergenic | 40.0% | |
| ATGATATGGGTAGACCGTTT+GGG | - | chr4_3:4010590-4010609 | Msa0625040:intron | 40.0% | |
| AACGCATATCCAAACCCAAA+CGG | + | chr4_3:4010607-4010626 | None:intergenic | 40.0% | |
| !! | GCGTTGTTTTCTCCTAACAA+CGG | - | chr4_3:4010622-4010641 | Msa0625040:intron | 40.0% |
| ACTGTATGTCACAATTGGCT+TGG | - | chr4_3:4010713-4010732 | Msa0625040:CDS | 40.0% | |
| ! | CTGTATGTCACAATTGGCTT+GGG | - | chr4_3:4010714-4010733 | Msa0625040:CDS | 40.0% |
| AGAAAGAAACTTCCATCCTC+TGG | - | chr4_3:4010741-4010760 | Msa0625040:CDS | 40.0% | |
| GTAACCTTCTCAAAATCCAG+AGG | + | chr4_3:4010760-4010779 | None:intergenic | 40.0% | |
| ACACACCGTCCTGAAAAACA+AGG | + | chr4_3:4010101-4010120 | None:intergenic | 45.0% | |
| !!! | TTGTTTTTCAGGACGGTGTG+TGG | - | chr4_3:4010100-4010119 | Msa0625040:intron | 45.0% |
| TTCTCAGCAAACTCTCGAAG+GGG | + | chr4_3:4010162-4010181 | None:intergenic | 45.0% | |
| GATGATATGGGTAGACCGTT+TGG | - | chr4_3:4010589-4010608 | Msa0625040:intron | 45.0% | |
| ! | CTTCTCTAGGGAAAGGAATG+CGG | + | chr4_3:4010660-4010679 | None:intergenic | 45.0% |
| ! | TCTGTGACTTCTCTAGGGAA+AGG | + | chr4_3:4010667-4010686 | None:intergenic | 45.0% |
| !! | TATGTCACAATTGGCTTGGG+AGG | - | chr4_3:4010717-4010736 | Msa0625040:CDS | 45.0% |
| CCTTCTCAAAATCCAGAGGA+TGG | + | chr4_3:4010756-4010775 | None:intergenic | 45.0% | |
| !! | CCATCCTCTGGATTTTGAGA+AGG | - | chr4_3:4010753-4010772 | Msa0625040:CDS | 45.0% |
| ACACACCGTCCTGAAAAACA+AGG | + | chr4_3:4010101-4010120 | None:intergenic | 45.0% | |
| !!! | TTGTTTTTCAGGACGGTGTG+TGG | - | chr4_3:4010100-4010119 | Msa0625040:intron | 45.0% |
| TTCTCAGCAAACTCTCGAAG+GGG | + | chr4_3:4010162-4010181 | None:intergenic | 45.0% | |
| GATGATATGGGTAGACCGTT+TGG | - | chr4_3:4010589-4010608 | Msa0625040:intron | 45.0% | |
| ! | CTTCTCTAGGGAAAGGAATG+CGG | + | chr4_3:4010660-4010679 | None:intergenic | 45.0% |
| ! | TCTGTGACTTCTCTAGGGAA+AGG | + | chr4_3:4010667-4010686 | None:intergenic | 45.0% |
| !! | TATGTCACAATTGGCTTGGG+AGG | - | chr4_3:4010717-4010736 | Msa0625040:CDS | 45.0% |
| CCTTCTCAAAATCCAGAGGA+TGG | + | chr4_3:4010756-4010775 | None:intergenic | 45.0% | |
| !! | CCATCCTCTGGATTTTGAGA+AGG | - | chr4_3:4010753-4010772 | Msa0625040:CDS | 45.0% |
| !! | TATAATTTAATAAAAATGAA+GGG | + | chr4_3:4009983-4010002 | None:intergenic | 5.0% |
| !! | ATATAATTTAATAAAAATGA+AGG | + | chr4_3:4009984-4010003 | None:intergenic | 5.0% |
| !! | TATAATTTAATAAAAATGAA+GGG | + | chr4_3:4009983-4010002 | None:intergenic | 5.0% |
| !! | ATATAATTTAATAAAAATGA+AGG | + | chr4_3:4009984-4010003 | None:intergenic | 5.0% |
| !! | TGTAGATAGGGTGCTGCACT+TGG | - | chr4_3:4009930-4009949 | Msa0625040:CDS | 50.0% |
| TGGATGACTTCCAGGAGGTT+AGG | - | chr4_3:4009950-4009969 | Msa0625040:CDS | 50.0% | |
| GGATGACTTCCAGGAGGTTA+GGG | - | chr4_3:4009951-4009970 | Msa0625040:CDS | 50.0% | |
| TCTCAGCAAACTCTCGAAGG+GGG | + | chr4_3:4010161-4010180 | None:intergenic | 50.0% | |
| ! | ATGGGTAGACCGTTTGGGTT+TGG | - | chr4_3:4010595-4010614 | Msa0625040:intron | 50.0% |
| !! | TGTAGATAGGGTGCTGCACT+TGG | - | chr4_3:4009930-4009949 | Msa0625040:CDS | 50.0% |
| TGGATGACTTCCAGGAGGTT+AGG | - | chr4_3:4009950-4009969 | Msa0625040:CDS | 50.0% | |
| GGATGACTTCCAGGAGGTTA+GGG | - | chr4_3:4009951-4009970 | Msa0625040:CDS | 50.0% | |
| TCTCAGCAAACTCTCGAAGG+GGG | + | chr4_3:4010161-4010180 | None:intergenic | 50.0% | |
| ! | ATGGGTAGACCGTTTGGGTT+TGG | - | chr4_3:4010595-4010614 | Msa0625040:intron | 50.0% |
| GCTGCACTTGGATGACTTCC+AGG | - | chr4_3:4009942-4009961 | Msa0625040:CDS | 55.0% | |
| GCACTTGGATGACTTCCAGG+AGG | - | chr4_3:4009945-4009964 | Msa0625040:CDS | 55.0% | |
| GCTGCACTTGGATGACTTCC+AGG | - | chr4_3:4009942-4009961 | Msa0625040:CDS | 55.0% | |
| GCACTTGGATGACTTCCAGG+AGG | - | chr4_3:4009945-4009964 | Msa0625040:CDS | 55.0% | |
| GCAAACTCTCGAAGGGGGTC+AGG | + | chr4_3:4010156-4010175 | None:intergenic | 60.0% | |
| GCAAACTCTCGAAGGGGGTC+AGG | + | chr4_3:4010156-4010175 | None:intergenic | 60.0% | |
| GGGTCAGGTCCCTAACCTCC+TGG | + | chr4_3:4009963-4009982 | None:intergenic | 65.0% | |
| GGGTCAGGTCCCTAACCTCC+TGG | + | chr4_3:4009963-4009982 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4009862 | 4010804 | 4009862 | ID=Msa0625040;Name=Msa0625040 |
| chr4_3 | mRNA | 4009862 | 4010804 | 4009862 | ID=Msa0625040-mRNA-1;Parent=Msa0625040;Name=Msa0625040-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|0.33|0.5|4|0|157 |
| chr4_3 | exon | 4010700 | 4010804 | 4010700 | ID=Msa0625040-mRNA-1:exon:960;Parent=Msa0625040-mRNA-1 |
| chr4_3 | exon | 4010406 | 4010555 | 4010406 | ID=Msa0625040-mRNA-1:exon:959;Parent=Msa0625040-mRNA-1 |
| chr4_3 | exon | 4010023 | 4010091 | 4010023 | ID=Msa0625040-mRNA-1:exon:958;Parent=Msa0625040-mRNA-1 |
| chr4_3 | exon | 4009862 | 4010011 | 4009862 | ID=Msa0625040-mRNA-1:exon:957;Parent=Msa0625040-mRNA-1 |
| chr4_3 | CDS | 4010700 | 4010804 | 4010700 | ID=Msa0625040-mRNA-1:cds;Parent=Msa0625040-mRNA-1 |
| chr4_3 | CDS | 4010406 | 4010555 | 4010406 | ID=Msa0625040-mRNA-1:cds;Parent=Msa0625040-mRNA-1 |
| chr4_3 | CDS | 4010023 | 4010091 | 4010023 | ID=Msa0625040-mRNA-1:cds;Parent=Msa0625040-mRNA-1 |
| chr4_3 | CDS | 4009862 | 4010011 | 4009862 | ID=Msa0625040-mRNA-1:cds;Parent=Msa0625040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
