Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585440 | XP_003604167.1 | 89.614 | 337 | 13 | 1 | 1 | 337 | 1 | 315 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585440 | sp|Q9LU39|GLUBP_ARATH | 51.020 | 343 | 122 | 9 | 1 | 335 | 1 | 305 | 7.18e-113 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0380270 | Msa0585440 | 0.803464 | 3.442563e-49 | -8.615850e-47 |
| Msa0460170 | Msa0585440 | 0.826108 | 3.250542e-54 | -8.615850e-47 |
| Msa0585440 | Msa0625040 | 0.840291 | 9.500804e-58 | -8.615850e-47 |
| Msa0585440 | Msa0968470 | 0.800107 | 1.683383e-48 | -8.615850e-47 |
| Msa0585440 | Msa1079720 | 0.811388 | 7.179927e-51 | -8.615850e-47 |
| Msa0585440 | Msa1080610 | 0.802442 | 5.600561e-49 | -8.615850e-47 |
| Msa0585440 | Msa1080680 | 0.802680 | 5.002060e-49 | -8.615850e-47 |
| Msa0585440 | Msa1167150 | 0.803557 | 3.292753e-49 | -8.615850e-47 |
| Msa0585440 | Msa1190100 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0585440 | Msa1208450 | 0.800253 | 1.572045e-48 | -8.615850e-47 |
| Msa0585440 | Msa1258030 | 0.820014 | 8.580662e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585440 | MtrunA17_Chr4g0000861 | 89.614 | 337 | 13 | 1 | 1 | 337 | 1 | 315 | 0.0 | 619 |
| Msa0585440 | MtrunA17_Chr3g0077841 | 55.385 | 65 | 7 | 1 | 223 | 287 | 1 | 43 | 1.64e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585440 | AT3G21200.1 | 51.020 | 343 | 122 | 9 | 1 | 335 | 1 | 305 | 7.30e-114 | 333 |
| Msa0585440 | AT3G03890.1 | 26.429 | 280 | 152 | 12 | 53 | 314 | 75 | 318 | 1.89e-11 | 64.7 |
Find 90 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTTCAAGAACAATTA+TGG | 0.206636 | 4_2:+6293090 | Msa0585440:CDS |
| CCTTGCATATTTGATGAAAT+TGG | 0.214626 | 4_2:-6295626 | None:intergenic |
| TAGGGTTCATATAGTATTTC+AGG | 0.218025 | 4_2:-6295859 | None:intergenic |
| AGTAATGTCTTCCATATTAT+TGG | 0.225630 | 4_2:-6294987 | None:intergenic |
| CGATTGTTGATTGTTCTAAT+TGG | 0.226764 | 4_2:-6293039 | None:intergenic |
| TGAAGGGTGTGTTGAGATTT+TGG | 0.236408 | 4_2:-6292969 | None:intergenic |
| CTATGTTGATTTGGATTTCC+AGG | 0.294434 | 4_2:+6295024 | Msa0585440:CDS |
| TGTTGAAATGAAAGGGAAAA+TGG | 0.302674 | 4_2:-6292805 | None:intergenic |
| TGAAATTAACACCAATAATA+TGG | 0.307435 | 4_2:+6294976 | Msa0585440:CDS |
| TCACAGAAGCAAAGATGATA+TGG | 0.313832 | 4_2:+6295361 | Msa0585440:CDS |
| TGTATATTATTGCTGTAGAT+AGG | 0.315510 | 4_2:+6294702 | Msa0585440:CDS |
| GCTGCACTTGGATGACTTCC+AGG | 0.317388 | 4_2:+6294727 | Msa0585440:CDS |
| TTATTTACATAGAATTTAAC+TGG | 0.340719 | 4_2:+6295145 | Msa0585440:intron |
| TTCGTTATTGATTCTGAAGA+TGG | 0.354749 | 4_2:+6293181 | Msa0585440:CDS |
| ATGGGTAGACCGTTTGGGTT+TGG | 0.369113 | 4_2:+6295380 | Msa0585440:CDS |
| TTGTAATGTCTATGTTGATT+TGG | 0.370501 | 4_2:+6295015 | Msa0585440:CDS |
| ACTTTCAACGTTAACCCAAC+AGG | 0.382511 | 4_2:+6293132 | Msa0585440:CDS |
| ATTTAACTGTATGTCACAAT+TGG | 0.386834 | 4_2:+6295494 | Msa0585440:CDS |
| AGAGAAGTCACAGATGAAAA+AGG | 0.391076 | 4_2:+6295459 | Msa0585440:CDS |
| CACAGCGGCTTGTTTCTTTG+TGG | 0.392329 | 4_2:+6294642 | Msa0585440:intron |
| GATGATATGGGTAGACCGTT+TGG | 0.397685 | 4_2:+6295374 | Msa0585440:CDS |
| GATTGTTGATTGTTCTAATT+GGG | 0.406772 | 4_2:-6293038 | None:intergenic |
| ATGATATGGGTAGACCGTTT+GGG | 0.415103 | 4_2:+6295375 | Msa0585440:CDS |
| TCCTAACAACGGTTTATTTG+AGG | 0.427212 | 4_2:+6295419 | Msa0585440:CDS |
| GAACAATTATGGATTTAGCT+AGG | 0.431943 | 4_2:+6293101 | Msa0585440:CDS |
| TGACAAGATATTGAACTTGT+TGG | 0.433046 | 4_2:+6295828 | Msa0585440:three_prime_UTR |
| TCTTTGTGGAAGAAGAGGTT+TGG | 0.434962 | 4_2:+6294656 | Msa0585440:CDS |
| ACTGTATGTCACAATTGGCT+TGG | 0.444223 | 4_2:+6295499 | Msa0585440:CDS |
| CGAAATGAGATTGAATTTGA+AGG | 0.447078 | 4_2:-6292986 | None:intergenic |
| ACCCAACAGGGTTATCCTCT+TGG | 0.450020 | 4_2:+6293145 | Msa0585440:CDS |
| CTGTATGTCACAATTGGCTT+GGG | 0.450082 | 4_2:+6295500 | Msa0585440:CDS |
| ATTCTGTGATGATTCATTTG+AGG | 0.453038 | 4_2:+6295697 | Msa0585440:three_prime_UTR |
| AGAAAGAAACTTCCATCCTC+TGG | 0.456228 | 4_2:+6295527 | Msa0585440:CDS |
| TGTTCAGTGTTGAAATGAAA+GGG | 0.456955 | 4_2:-6292812 | None:intergenic |
| AACAATTATGGATTTAGCTA+GGG | 0.462844 | 4_2:+6293102 | Msa0585440:CDS |
| CTTGAAACTTCAGATGGAAA+CGG | 0.466933 | 4_2:-6293079 | None:intergenic |
| ACTCCTCAGTGTACACTTCA+AGG | 0.467071 | 4_2:+6293419 | Msa0585440:CDS |
| TGTAGATAGGGTGCTGCACT+TGG | 0.473744 | 4_2:+6294715 | Msa0585440:CDS |
| AAATTGGGCAAATCCAAAAT+CGG | 0.474793 | 4_2:+6292745 | None:intergenic |
| CACTTCTTTCAAATAAAGTC+AGG | 0.480140 | 4_2:-6295799 | None:intergenic |
| AAATGCTGTGTAGATAAATC+AGG | 0.483906 | 4_2:-6295172 | None:intergenic |
| CAGGGTTATCCTCTTGGTGT+TGG | 0.489252 | 4_2:+6293151 | Msa0585440:CDS |
| ATTATGGATTTAGCTAGGGT+TGG | 0.490791 | 4_2:+6293106 | Msa0585440:CDS |
| ACCTCAAATAAACCGTTGTT+AGG | 0.493427 | 4_2:-6295420 | None:intergenic |
| ATTGTTCTTGAAACTTCAGA+TGG | 0.496689 | 4_2:-6293085 | None:intergenic |
| GAAATGAGATTGAATTTGAA+GGG | 0.509653 | 4_2:-6292985 | None:intergenic |
| TAACTCACCTTGATCAAAGC+TGG | 0.516382 | 4_2:-6293464 | None:intergenic |
| TTGTTCAGTGTTGAAATGAA+AGG | 0.517988 | 4_2:-6292813 | None:intergenic |
| GTATATTATTGCTGTAGATA+GGG | 0.518730 | 4_2:+6294703 | Msa0585440:CDS |
| GAAGATTGAATTGAAATTGA+AGG | 0.519184 | 4_2:-6292872 | None:intergenic |
| TTTCATCTGTGACTTCTCTA+GGG | 0.522593 | 4_2:-6295455 | None:intergenic |
| ACCAAGAGGATAACCCTGTT+GGG | 0.525860 | 4_2:-6293146 | None:intergenic |
| GTTGTTGGTGTAAAACATGA+TGG | 0.527632 | 4_2:-6292935 | None:intergenic |
| CATACAGTTAAATGTTGACT+TGG | 0.529692 | 4_2:-6295484 | None:intergenic |
| ACCTTGACATGAAGTGAAGA+GGG | 0.536966 | 4_2:-6293265 | None:intergenic |
| CATATAGTATTTCAGGCACA+AGG | 0.543248 | 4_2:-6295852 | None:intergenic |
| CACCAAGAGGATAACCCTGT+TGG | 0.548682 | 4_2:-6293147 | None:intergenic |
| CCTTCTCAAAATCCAGAGGA+TGG | 0.550636 | 4_2:-6295539 | None:intergenic |
| TTGTTTCTTTGTGGAAGAAG+AGG | 0.550656 | 4_2:+6294651 | Msa0585440:CDS |
| ATATTTGATGAAATTGGTAG+TGG | 0.551633 | 4_2:-6295620 | None:intergenic |
| CACAGAAGCAAAGATGATAT+GGG | 0.552316 | 4_2:+6295362 | Msa0585440:CDS |
| AACGCATATCCAAACCCAAA+CGG | 0.555598 | 4_2:-6295389 | None:intergenic |
| AAAATTTCTAAAGAACTCTA+GGG | 0.557397 | 4_2:-6295877 | None:intergenic |
| AATTCTCAGCAAACTCTCGA+AGG | 0.558854 | 4_2:-6294946 | None:intergenic |
| GCAGGATCCAGCTTTGATCA+AGG | 0.570718 | 4_2:+6293457 | Msa0585440:CDS |
| ATTCTCAGCAAACTCTCGAA+GGG | 0.571271 | 4_2:-6294945 | None:intergenic |
| CTTTCAACGTTAACCCAACA+GGG | 0.573683 | 4_2:+6293133 | Msa0585440:CDS |
| GTGAATGTTATTATCAGTGG+TGG | 0.576165 | 4_2:-6293239 | None:intergenic |
| TCTGTGACTTCTCTAGGGAA+AGG | 0.588455 | 4_2:-6295450 | None:intergenic |
| TTGATCAAAGCTGGATCCTG+CGG | 0.589973 | 4_2:-6293455 | None:intergenic |
| TGCATAAATACAGTCACAGC+AGG | 0.591478 | 4_2:-6295211 | None:intergenic |
| TACCTTGACATGAAGTGAAG+AGG | 0.592658 | 4_2:-6293266 | None:intergenic |
| CCCCTCTTCACTTCATGTCA+AGG | 0.595937 | 4_2:+6293264 | Msa0585440:CDS |
| TATGTCACAATTGGCTTGGG+AGG | 0.603045 | 4_2:+6295503 | Msa0585440:CDS |
| GATTGAATTGAAATTGAAGG+TGG | 0.604584 | 4_2:-6292869 | None:intergenic |
| GGTGTGAATGTTATTATCAG+TGG | 0.609297 | 4_2:-6293242 | None:intergenic |
| TTCTTTCAAATAAAGTCAGG+AGG | 0.611188 | 4_2:-6295796 | None:intergenic |
| CCAATTTCATCAAATATGCA+AGG | 0.612346 | 4_2:+6295626 | Msa0585440:three_prime_UTR |
| TTCTCAGCAAACTCTCGAAG+GGG | 0.632254 | 4_2:-6294944 | None:intergenic |
| AGGAACGCTCACGAAACCGC+AGG | 0.635837 | 4_2:+6293439 | Msa0585440:CDS |
| AATCGAACACCAACACCAAG+AGG | 0.641303 | 4_2:-6293160 | None:intergenic |
| CTTCTCTAGGGAAAGGAATG+CGG | 0.641717 | 4_2:-6295443 | None:intergenic |
| TCTCAGCAAACTCTCGAAGG+GGG | 0.641945 | 4_2:-6294943 | None:intergenic |
| TGAATGTTATTATCAGTGGT+GGG | 0.656145 | 4_2:-6293238 | None:intergenic |
| GTAACCTTCTCAAAATCCAG+AGG | 0.672238 | 4_2:-6295543 | None:intergenic |
| ATATAGTATTTCAGGCACAA+GGG | 0.673526 | 4_2:-6295851 | None:intergenic |
| CTTGACATGAAGTGAAGAGG+GGG | 0.679817 | 4_2:-6293263 | None:intergenic |
| CCTTGACATGAAGTGAAGAG+GGG | 0.702259 | 4_2:-6293264 | None:intergenic |
| GCACTTGGATGACTTCCAGG+AGG | 0.711976 | 4_2:+6294730 | Msa0585440:CDS |
| GTTCCTTGAAGTGTACACTG+AGG | 0.794003 | 4_2:-6293422 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTGAAATAGAAAAAA+GGG | - | chr4_2:6293210-6293229 | None:intergenic | 15.0% |
| !! | TTATGATTGAAATAGAAAAA+AGG | - | chr4_2:6293211-6293230 | None:intergenic | 15.0% |
| !!! | TATTCAAATTTTGAGTTTTT+TGG | + | chr4_2:6293287-6293306 | Msa0585440:intron | 15.0% |
| !!! | ATTCTAAAATTAAGTTCAAT+TGG | + | chr4_2:6293933-6293952 | Msa0585440:intron | 15.0% |
| !! | AACTAATGTGATATATTATA+TGG | - | chr4_2:6294140-6294159 | None:intergenic | 15.0% |
| !! | ACTAAATTAACTAATTCAAA+AGG | + | chr4_2:6294351-6294370 | Msa0585440:intron | 15.0% |
| !! | CTAAATTAACTAATTCAAAA+GGG | + | chr4_2:6294352-6294371 | Msa0585440:intron | 15.0% |
| !!! | TGATTGATGATTTTTAATTT+TGG | + | chr4_2:6294381-6294400 | Msa0585440:intron | 15.0% |
| !! | GGATAACAAATAAATAAAAA+TGG | - | chr4_2:6295101-6295120 | None:intergenic | 15.0% |
| !! | AAATTCTATGTAAATAAATC+AGG | - | chr4_2:6295142-6295161 | None:intergenic | 15.0% |
| !! | TTATTTACATAGAATTTAAC+TGG | + | chr4_2:6295145-6295164 | Msa0585440:intron | 15.0% |
| !!! | AGTTTTTTGGATGAATTAAT+GGG | + | chr4_2:6293300-6293319 | Msa0585440:intron | 20.0% |
| !!! | TGATCTTTTAAATGAACAAA+AGG | + | chr4_2:6294107-6294126 | Msa0585440:intron | 20.0% |
| !!! | AGTTGTTTTGTTATATAAGT+TGG | + | chr4_2:6294854-6294873 | Msa0585440:intron | 20.0% |
| !! | TGAAATTAACACCAATAATA+TGG | + | chr4_2:6294976-6294995 | Msa0585440:CDS | 20.0% |
| ! | GAAGATTGAATTGAAATTGA+AGG | - | chr4_2:6292875-6292894 | None:intergenic | 25.0% |
| ! | GAAATGAGATTGAATTTGAA+GGG | - | chr4_2:6292988-6293007 | None:intergenic | 25.0% |
| !! | GATTGTTGATTGTTCTAATT+GGG | - | chr4_2:6293041-6293060 | None:intergenic | 25.0% |
| ! | TGAAGTTTCAAGAACAATTA+TGG | + | chr4_2:6293090-6293109 | Msa0585440:CDS | 25.0% |
| ! | AACAATTATGGATTTAGCTA+GGG | + | chr4_2:6293102-6293121 | Msa0585440:CDS | 25.0% |
| !!! | GAGTTTTTTGGATGAATTAA+TGG | + | chr4_2:6293299-6293318 | Msa0585440:intron | 25.0% |
| ! | ATTAATGGGATAATTGGAAT+TGG | + | chr4_2:6293314-6293333 | Msa0585440:intron | 25.0% |
| ! | TTAGTATAGATACATATGCA+TGG | + | chr4_2:6293543-6293562 | Msa0585440:intron | 25.0% |
| ! | AATTTAGTCCCTTAAATTGT+AGG | + | chr4_2:6293597-6293616 | Msa0585440:intron | 25.0% |
| ! | ACTAATTTGACTAACTCAAA+AGG | + | chr4_2:6293863-6293882 | Msa0585440:intron | 25.0% |
| !!! | TTATTTTTGTATCAACCATC+CGG | - | chr4_2:6294298-6294317 | None:intergenic | 25.0% |
| ! | TTAATTACCGAGAATTTCTA+GGG | + | chr4_2:6294422-6294441 | Msa0585440:intron | 25.0% |
| ! | AATTTATCCCTAGAAATTCT+CGG | - | chr4_2:6294432-6294451 | None:intergenic | 25.0% |
| ! | TGTATATTATTGCTGTAGAT+AGG | + | chr4_2:6294702-6294721 | Msa0585440:CDS | 25.0% |
| ! | GTATATTATTGCTGTAGATA+GGG | + | chr4_2:6294703-6294722 | Msa0585440:CDS | 25.0% |
| ! | TTTAATAAAAATGAAGGGTC+AGG | - | chr4_2:6294763-6294782 | None:intergenic | 25.0% |
| ! | TTGCTGATACTAATTGTAAT+AGG | + | chr4_2:6294808-6294827 | Msa0585440:intron | 25.0% |
| ! | ATATAACAAAACAACTTGCA+AGG | - | chr4_2:6294850-6294869 | None:intergenic | 25.0% |
| ! | AGTAATGTCTTCCATATTAT+TGG | - | chr4_2:6294990-6295009 | None:intergenic | 25.0% |
| !! | TTGTAATGTCTATGTTGATT+TGG | + | chr4_2:6295015-6295034 | Msa0585440:CDS | 25.0% |
| !! | TTGTTATCCTTTGATTTAAC+TGG | + | chr4_2:6295112-6295131 | Msa0585440:intron | 25.0% |
| ! | AGCATTCTTATAAAAATCAC+TGG | + | chr4_2:6295233-6295252 | Msa0585440:intron | 25.0% |
| ! | GAAGTTAGATTTCTATTTAG+TGG | - | chr4_2:6295269-6295288 | None:intergenic | 25.0% |
| ! | CTAACTTCAAAACAATATTG+AGG | + | chr4_2:6295281-6295300 | Msa0585440:intron | 25.0% |
| ! | ATTTAACTGTATGTCACAAT+TGG | + | chr4_2:6295494-6295513 | Msa0585440:CDS | 25.0% |
| ! | ATATTTGATGAAATTGGTAG+TGG | - | chr4_2:6295623-6295642 | None:intergenic | 25.0% |
| !!! | CAAGAATATGACCATTTTTA+TGG | + | chr4_2:6295667-6295686 | Msa0585440:three_prime_UTR | 25.0% |
| ! | GAATACAAACACCATAAAAA+TGG | - | chr4_2:6295681-6295700 | None:intergenic | 25.0% |
| TGTTGAAATGAAAGGGAAAA+TGG | - | chr4_2:6292808-6292827 | None:intergenic | 30.0% | |
| ! | TGTTCAGTGTTGAAATGAAA+GGG | - | chr4_2:6292815-6292834 | None:intergenic | 30.0% |
| ! | TTGTTCAGTGTTGAAATGAA+AGG | - | chr4_2:6292816-6292835 | None:intergenic | 30.0% |
| !!! | GTTGTGTTTTTTGTTCTTGT+TGG | - | chr4_2:6292850-6292869 | None:intergenic | 30.0% |
| GATTGAATTGAAATTGAAGG+TGG | - | chr4_2:6292872-6292891 | None:intergenic | 30.0% | |
| CGAAATGAGATTGAATTTGA+AGG | - | chr4_2:6292989-6293008 | None:intergenic | 30.0% | |
| ! | CGATTGTTGATTGTTCTAAT+TGG | - | chr4_2:6293042-6293061 | None:intergenic | 30.0% |
| ATTGTTCTTGAAACTTCAGA+TGG | - | chr4_2:6293088-6293107 | None:intergenic | 30.0% | |
| GAACAATTATGGATTTAGCT+AGG | + | chr4_2:6293101-6293120 | Msa0585440:CDS | 30.0% | |
| !! | TTCGTTATTGATTCTGAAGA+TGG | + | chr4_2:6293181-6293200 | Msa0585440:CDS | 30.0% |
| TGAATGTTATTATCAGTGGT+GGG | - | chr4_2:6293241-6293260 | None:intergenic | 30.0% | |
| GGATGAATTAATGGGATAAT+TGG | + | chr4_2:6293308-6293327 | Msa0585440:intron | 30.0% | |
| GGATAATTGGAATTGGAATT+GGG | + | chr4_2:6293321-6293340 | Msa0585440:intron | 30.0% | |
| AAACTAATGTGGTCTATTGT+TGG | - | chr4_2:6293626-6293645 | None:intergenic | 30.0% | |
| ! | TTAGTTTGAATCAAGTGGTT+TGG | + | chr4_2:6293639-6293658 | Msa0585440:intron | 30.0% |
| CGCATTAATTCCAAGAAAAT+GGG | - | chr4_2:6293781-6293800 | None:intergenic | 30.0% | |
| TCGCATTAATTCCAAGAAAA+TGG | - | chr4_2:6293782-6293801 | None:intergenic | 30.0% | |
| ! | ATTGACTCTAAGAGTTAAGA+CGG | + | chr4_2:6293801-6293820 | Msa0585440:intron | 30.0% |
| AAAATCACATTAGTTCGTCT+TGG | + | chr4_2:6293829-6293848 | Msa0585440:intron | 30.0% | |
| TAAGTTCAATTGGACAATGT+TGG | + | chr4_2:6293943-6293962 | Msa0585440:intron | 30.0% | |
| TAATCAGTTAGTAACAGTGA+AGG | + | chr4_2:6294005-6294024 | Msa0585440:intron | 30.0% | |
| TCACAGTTTGAAAAAACCTT+AGG | - | chr4_2:6294037-6294056 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | + | chr4_2:6294183-6294202 | Msa0585440:intron | 30.0% | |
| GTTAATTACCGAGAATTTCT+AGG | + | chr4_2:6294421-6294440 | Msa0585440:intron | 30.0% | |
| ! | GAGAATTTCTAGGGATAAAT+TGG | + | chr4_2:6294431-6294450 | Msa0585440:intron | 30.0% |
| AAAGTGATTGATGTTGACAA+AGG | + | chr4_2:6294503-6294522 | Msa0585440:intron | 30.0% | |
| GCTATATGAAACTACAATCA+AGG | - | chr4_2:6294564-6294583 | None:intergenic | 30.0% | |
| TATCAGCAAACTAGTAGTAT+AGG | - | chr4_2:6294797-6294816 | None:intergenic | 30.0% | |
| ! | AGCATTTTTGTAGTCTAAAG+AGG | - | chr4_2:6294915-6294934 | None:intergenic | 30.0% |
| AAATGCTGTGTAGATAAATC+AGG | - | chr4_2:6295175-6295194 | None:intergenic | 30.0% | |
| ACACAGCAAAACTAACTTAT+CGG | - | chr4_2:6295308-6295327 | None:intergenic | 30.0% | |
| ! | TGTATTTGATTTCCCATTGT+AGG | + | chr4_2:6295338-6295357 | Msa0585440:intron | 30.0% |
| ! | CATACAGTTAAATGTTGACT+TGG | - | chr4_2:6295487-6295506 | None:intergenic | 30.0% |
| CCTTGCATATTTGATGAAAT+TGG | - | chr4_2:6295629-6295648 | None:intergenic | 30.0% | |
| CCAATTTCATCAAATATGCA+AGG | + | chr4_2:6295626-6295645 | Msa0585440:three_prime_UTR | 30.0% | |
| ATTCTGTGATGATTCATTTG+AGG | + | chr4_2:6295697-6295716 | Msa0585440:three_prime_UTR | 30.0% | |
| !! | TTGTTTTGCAAGGCAATTTT+TGG | + | chr4_2:6295751-6295770 | Msa0585440:three_prime_UTR | 30.0% |
| TTCTTTCAAATAAAGTCAGG+AGG | - | chr4_2:6295799-6295818 | None:intergenic | 30.0% | |
| CACTTCTTTCAAATAAAGTC+AGG | - | chr4_2:6295802-6295821 | None:intergenic | 30.0% | |
| TGACAAGATATTGAACTTGT+TGG | + | chr4_2:6295828-6295847 | Msa0585440:three_prime_UTR | 30.0% | |
| ATATAGTATTTCAGGCACAA+GGG | - | chr4_2:6295854-6295873 | None:intergenic | 30.0% | |
| TAGGGTTCATATAGTATTTC+AGG | - | chr4_2:6295862-6295881 | None:intergenic | 30.0% | |
| ! | CAATGTGTCTTTTCCGATTT+TGG | - | chr4_2:6292761-6292780 | None:intergenic | 35.0% |
| GTTGTTGGTGTAAAACATGA+TGG | - | chr4_2:6292938-6292957 | None:intergenic | 35.0% | |
| !!! | TTGGTGTTTGGTTTTGTTGT+TGG | - | chr4_2:6292953-6292972 | None:intergenic | 35.0% |
| !!! | TGTGTTGAGATTTTGGTGTT+TGG | - | chr4_2:6292965-6292984 | None:intergenic | 35.0% |
| CTTGAAACTTCAGATGGAAA+CGG | - | chr4_2:6293082-6293101 | None:intergenic | 35.0% | |
| ATTATGGATTTAGCTAGGGT+TGG | + | chr4_2:6293106-6293125 | Msa0585440:CDS | 35.0% | |
| GTGAATGTTATTATCAGTGG+TGG | - | chr4_2:6293242-6293261 | None:intergenic | 35.0% | |
| GGTGTGAATGTTATTATCAG+TGG | - | chr4_2:6293245-6293264 | None:intergenic | 35.0% | |
| GGGATAATTGGAATTGGAAT+TGG | + | chr4_2:6293320-6293339 | Msa0585440:intron | 35.0% | |
| CCACTTGATTCAAACTAATG+TGG | - | chr4_2:6293637-6293656 | None:intergenic | 35.0% | |
| ! | CCACATTAGTTTGAATCAAG+TGG | + | chr4_2:6293634-6293653 | Msa0585440:intron | 35.0% |
| TTCTTGGCTAGAACAATTTG+TGG | + | chr4_2:6293719-6293738 | Msa0585440:intron | 35.0% | |
| GAGTTGAGGAGAGTAAAAAT+TGG | - | chr4_2:6293745-6293764 | None:intergenic | 35.0% | |
| ! | ATTTTTACTCTCCTCAACTC+TGG | + | chr4_2:6293745-6293764 | Msa0585440:intron | 35.0% |
| ! | ATTACCAGAACCCATTTTCT+TGG | + | chr4_2:6293768-6293787 | Msa0585440:intron | 35.0% |
| ! | AATTCCAAGAAAATGGGTTC+TGG | - | chr4_2:6293775-6293794 | None:intergenic | 35.0% |
| ! | TTGACTCTAAGAGTTAAGAC+GGG | + | chr4_2:6293802-6293821 | Msa0585440:intron | 35.0% |
| CAAAAGGACTAATGTGATTG+AGG | + | chr4_2:6293879-6293898 | Msa0585440:intron | 35.0% | |
| TGATTGAGGATTCTCAATGT+TGG | + | chr4_2:6293893-6293912 | Msa0585440:intron | 35.0% | |
| AACAATCTTTGGCCAAACTT+TGG | + | chr4_2:6294245-6294264 | Msa0585440:intron | 35.0% | |
| TTTAGTCTCTACAATTGTCC+AGG | - | chr4_2:6294337-6294356 | None:intergenic | 35.0% | |
| AAACTACAATCAAGGTCACA+AGG | - | chr4_2:6294556-6294575 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTTGTGGAAGAAG+AGG | + | chr4_2:6294651-6294670 | Msa0585440:CDS | 35.0% |
| !!! | TATGTCCTTGTTTTTCAGGA+CGG | + | chr4_2:6294878-6294897 | Msa0585440:intron | 35.0% |
| !! | CTATGTTGATTTGGATTTCC+AGG | + | chr4_2:6295024-6295043 | Msa0585440:CDS | 35.0% |
| TCACAGAAGCAAAGATGATA+TGG | + | chr4_2:6295361-6295380 | Msa0585440:CDS | 35.0% | |
| CACAGAAGCAAAGATGATAT+GGG | + | chr4_2:6295362-6295381 | Msa0585440:CDS | 35.0% | |
| !! | CGTTTGTTTTCTCCTAACAA+CGG | + | chr4_2:6295408-6295427 | Msa0585440:CDS | 35.0% |
| TCCTAACAACGGTTTATTTG+AGG | + | chr4_2:6295419-6295438 | Msa0585440:CDS | 35.0% | |
| ACCTCAAATAAACCGTTGTT+AGG | - | chr4_2:6295423-6295442 | None:intergenic | 35.0% | |
| TTTCATCTGTGACTTCTCTA+GGG | - | chr4_2:6295458-6295477 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTGACTTCTCT+AGG | - | chr4_2:6295459-6295478 | None:intergenic | 35.0% |
| AGAGAAGTCACAGATGAAAA+AGG | + | chr4_2:6295459-6295478 | Msa0585440:CDS | 35.0% | |
| CATATAGTATTTCAGGCACA+AGG | - | chr4_2:6295855-6295874 | None:intergenic | 35.0% | |
| !! | TGAAGGGTGTGTTGAGATTT+TGG | - | chr4_2:6292972-6292991 | None:intergenic | 40.0% |
| ACTTTCAACGTTAACCCAAC+AGG | + | chr4_2:6293132-6293151 | Msa0585440:CDS | 40.0% | |
| CTTTCAACGTTAACCCAACA+GGG | + | chr4_2:6293133-6293152 | Msa0585440:CDS | 40.0% | |
| ACCTTGACATGAAGTGAAGA+GGG | - | chr4_2:6293268-6293287 | None:intergenic | 40.0% | |
| TACCTTGACATGAAGTGAAG+AGG | - | chr4_2:6293269-6293288 | None:intergenic | 40.0% | |
| ! | GTCAATCAGTTTTTGCAGTC+TGG | + | chr4_2:6293389-6293408 | Msa0585440:intron | 40.0% |
| ! | AGTTTTTGCAGTCTGGATTG+AGG | + | chr4_2:6293396-6293415 | Msa0585440:intron | 40.0% |
| TAACTCACCTTGATCAAAGC+TGG | - | chr4_2:6293467-6293486 | None:intergenic | 40.0% | |
| CTTTGATCAAGGTGAGTTAG+TGG | + | chr4_2:6293468-6293487 | Msa0585440:intron | 40.0% | |
| GTTGGACGCCTACAATTTAA+GGG | - | chr4_2:6293608-6293627 | None:intergenic | 40.0% | |
| TGTTGGACGCCTACAATTTA+AGG | - | chr4_2:6293609-6293628 | None:intergenic | 40.0% | |
| ! | ATCAAGTGGTTTGGCTTAAG+TGG | + | chr4_2:6293648-6293667 | Msa0585440:intron | 40.0% |
| GAGTACCTGAGTTTGATTCT+TGG | + | chr4_2:6293703-6293722 | Msa0585440:intron | 40.0% | |
| TCTAGCCAAGAATCAAACTC+AGG | - | chr4_2:6293711-6293730 | None:intergenic | 40.0% | |
| ! | ACAGTGAAGGTACATACCTA+AGG | + | chr4_2:6294018-6294037 | Msa0585440:intron | 40.0% |
| AGTTTAGCCGCTGAAATTGT+AGG | + | chr4_2:6294072-6294091 | Msa0585440:intron | 40.0% | |
| AACAAGAAGCTCAACTCAAG+TGG | + | chr4_2:6294163-6294182 | Msa0585440:intron | 40.0% | |
| ! | GCCAAAGATTGTTCTAGCTA+GGG | - | chr4_2:6294238-6294257 | None:intergenic | 40.0% |
| AACATTGCATTAGTTCGTCC+TGG | + | chr4_2:6294316-6294335 | Msa0585440:intron | 40.0% | |
| GTGATTGATGTTGACAAAGG+TGG | + | chr4_2:6294506-6294525 | Msa0585440:intron | 40.0% | |
| CAATCAAGGTCACAAGGTAA+GGG | - | chr4_2:6294550-6294569 | None:intergenic | 40.0% | |
| ACAATCAAGGTCACAAGGTA+AGG | - | chr4_2:6294551-6294570 | None:intergenic | 40.0% | |
| TTTCTATTGTCACTCCACAG+CGG | + | chr4_2:6294627-6294646 | Msa0585440:intron | 40.0% | |
| TCTTTGTGGAAGAAGAGGTT+TGG | + | chr4_2:6294656-6294675 | Msa0585440:CDS | 40.0% | |
| !!! | TGGCTATGTCCTTGTTTTTC+AGG | + | chr4_2:6294874-6294893 | Msa0585440:intron | 40.0% |
| ATTCTCAGCAAACTCTCGAA+GGG | - | chr4_2:6294948-6294967 | None:intergenic | 40.0% | |
| AATTCTCAGCAAACTCTCGA+AGG | - | chr4_2:6294949-6294968 | None:intergenic | 40.0% | |
| !! | ATACATGCAGGAAAAGTACC+TGG | - | chr4_2:6295045-6295064 | None:intergenic | 40.0% |
| CATGCTATGTAGATACATGC+AGG | - | chr4_2:6295057-6295076 | None:intergenic | 40.0% | |
| AGGTGCACCAGTTAAATCAA+AGG | - | chr4_2:6295122-6295141 | None:intergenic | 40.0% | |
| TGCATAAATACAGTCACAGC+AGG | - | chr4_2:6295214-6295233 | None:intergenic | 40.0% | |
| TTGCTTCTGTGACCTACAAT+GGG | - | chr4_2:6295353-6295372 | None:intergenic | 40.0% | |
| TTTGCTTCTGTGACCTACAA+TGG | - | chr4_2:6295354-6295373 | None:intergenic | 40.0% | |
| ATGATATGGGTAGACCGTTT+GGG | + | chr4_2:6295375-6295394 | Msa0585440:CDS | 40.0% | |
| AACGCATATCCAAACCCAAA+CGG | - | chr4_2:6295392-6295411 | None:intergenic | 40.0% | |
| ACTGTATGTCACAATTGGCT+TGG | + | chr4_2:6295499-6295518 | Msa0585440:CDS | 40.0% | |
| ! | CTGTATGTCACAATTGGCTT+GGG | + | chr4_2:6295500-6295519 | Msa0585440:CDS | 40.0% |
| AGAAAGAAACTTCCATCCTC+TGG | + | chr4_2:6295527-6295546 | Msa0585440:CDS | 40.0% | |
| GTAACCTTCTCAAAATCCAG+AGG | - | chr4_2:6295546-6295565 | None:intergenic | 40.0% | |
| !!! | AAGACTGAGCTTGTTTTGCA+AGG | + | chr4_2:6295741-6295760 | Msa0585440:three_prime_UTR | 40.0% |
| ! | GTTTTTGTCTAGTCTGTTGC+AGG | + | chr4_2:6295773-6295792 | Msa0585440:three_prime_UTR | 40.0% |
| ACCAAGAGGATAACCCTGTT+GGG | - | chr4_2:6293149-6293168 | None:intergenic | 45.0% | |
| AATCGAACACCAACACCAAG+AGG | - | chr4_2:6293163-6293182 | None:intergenic | 45.0% | |
| CTTGACATGAAGTGAAGAGG+GGG | - | chr4_2:6293266-6293285 | None:intergenic | 45.0% | |
| CCTTGACATGAAGTGAAGAG+GGG | - | chr4_2:6293267-6293286 | None:intergenic | 45.0% | |
| ACTCCTCAGTGTACACTTCA+AGG | + | chr4_2:6293419-6293438 | Msa0585440:CDS | 45.0% | |
| GTTCCTTGAAGTGTACACTG+AGG | - | chr4_2:6293425-6293444 | None:intergenic | 45.0% | |
| TTGATCAAAGCTGGATCCTG+CGG | - | chr4_2:6293458-6293477 | None:intergenic | 45.0% | |
| GTTCTGGTAATCCAGAGTTG+AGG | - | chr4_2:6293759-6293778 | None:intergenic | 45.0% | |
| TTCGACGCCTACAATTTCAG+CGG | - | chr4_2:6294082-6294101 | None:intergenic | 45.0% | |
| GCCCTAGCTAGAACAATCTT+TGG | + | chr4_2:6294234-6294253 | Msa0585440:intron | 45.0% | |
| ! | GGCCAAAGATTGTTCTAGCT+AGG | - | chr4_2:6294239-6294258 | None:intergenic | 45.0% |
| ACAGAACACACAAGCGTAGA+TGG | - | chr4_2:6294596-6294615 | None:intergenic | 45.0% | |
| ACACACCGTCCTGAAAAACA+AGG | - | chr4_2:6294886-6294905 | None:intergenic | 45.0% | |
| !!! | TTGTTTTTCAGGACGGTGTG+TGG | + | chr4_2:6294885-6294904 | Msa0585440:intron | 45.0% |
| TTCTCAGCAAACTCTCGAAG+GGG | - | chr4_2:6294947-6294966 | None:intergenic | 45.0% | |
| GATGATATGGGTAGACCGTT+TGG | + | chr4_2:6295374-6295393 | Msa0585440:CDS | 45.0% | |
| ! | CTTCTCTAGGGAAAGGAATG+CGG | - | chr4_2:6295446-6295465 | None:intergenic | 45.0% |
| ! | TCTGTGACTTCTCTAGGGAA+AGG | - | chr4_2:6295453-6295472 | None:intergenic | 45.0% |
| !! | TATGTCACAATTGGCTTGGG+AGG | + | chr4_2:6295503-6295522 | Msa0585440:CDS | 45.0% |
| CCTTCTCAAAATCCAGAGGA+TGG | - | chr4_2:6295542-6295561 | None:intergenic | 45.0% | |
| !! | CCATCCTCTGGATTTTGAGA+AGG | + | chr4_2:6295539-6295558 | Msa0585440:CDS | 45.0% |
| !! | TATAATTTAATAAAAATGAA+GGG | - | chr4_2:6294768-6294787 | None:intergenic | 5.0% |
| !! | ATATAATTTAATAAAAATGA+AGG | - | chr4_2:6294769-6294788 | None:intergenic | 5.0% |
| ACCCAACAGGGTTATCCTCT+TGG | + | chr4_2:6293145-6293164 | Msa0585440:CDS | 50.0% | |
| CACCAAGAGGATAACCCTGT+TGG | - | chr4_2:6293150-6293169 | None:intergenic | 50.0% | |
| ! | CAGGGTTATCCTCTTGGTGT+TGG | + | chr4_2:6293151-6293170 | Msa0585440:CDS | 50.0% |
| CCCCTCTTCACTTCATGTCA+AGG | + | chr4_2:6293264-6293283 | Msa0585440:CDS | 50.0% | |
| ! | GCAGGATCCAGCTTTGATCA+AGG | + | chr4_2:6293457-6293476 | Msa0585440:CDS | 50.0% |
| ! | TTCTAGCTAGGGCTCGAACT+CGG | - | chr4_2:6294227-6294246 | None:intergenic | 50.0% |
| ! | GGCTCTGGTAGTCCAAAGTT+TGG | - | chr4_2:6294260-6294279 | None:intergenic | 50.0% |
| ATCCGGTTTCCAGAGGAAAG+GGG | - | chr4_2:6294281-6294300 | None:intergenic | 50.0% | |
| CATCCGGTTTCCAGAGGAAA+GGG | - | chr4_2:6294282-6294301 | None:intergenic | 50.0% | |
| ATCAACCATCCGGTTTCCAG+AGG | - | chr4_2:6294288-6294307 | None:intergenic | 50.0% | |
| CACAAAGAAACAAGCCGCTG+TGG | - | chr4_2:6294644-6294663 | None:intergenic | 50.0% | |
| ! | CACAGCGGCTTGTTTCTTTG+TGG | + | chr4_2:6294642-6294661 | Msa0585440:intron | 50.0% |
| !! | TGTAGATAGGGTGCTGCACT+TGG | + | chr4_2:6294715-6294734 | Msa0585440:CDS | 50.0% |
| TGGATGACTTCCAGGAGGTT+AGG | + | chr4_2:6294735-6294754 | Msa0585440:intron | 50.0% | |
| GGATGACTTCCAGGAGGTTA+GGG | + | chr4_2:6294736-6294755 | Msa0585440:intron | 50.0% | |
| TCTCAGCAAACTCTCGAAGG+GGG | - | chr4_2:6294946-6294965 | None:intergenic | 50.0% | |
| ! | ATGGGTAGACCGTTTGGGTT+TGG | + | chr4_2:6295380-6295399 | Msa0585440:CDS | 50.0% |
| TCTAGCTAGGGCTCGAACTC+GGG | - | chr4_2:6294226-6294245 | None:intergenic | 55.0% | |
| TTTCCAGAGGAAAGGGGCTC+TGG | - | chr4_2:6294275-6294294 | None:intergenic | 55.0% | |
| ! | AGCCCCTTTCCTCTGGAAAC+CGG | + | chr4_2:6294276-6294295 | Msa0585440:intron | 55.0% |
| CCATCCGGTTTCCAGAGGAA+AGG | - | chr4_2:6294283-6294302 | None:intergenic | 55.0% | |
| ! | CCTTTCCTCTGGAAACCGGA+TGG | + | chr4_2:6294280-6294299 | Msa0585440:intron | 55.0% |
| GCTGCACTTGGATGACTTCC+AGG | + | chr4_2:6294727-6294746 | Msa0585440:CDS | 55.0% | |
| GCACTTGGATGACTTCCAGG+AGG | + | chr4_2:6294730-6294749 | Msa0585440:CDS | 55.0% | |
| AGGAACGCTCACGAAACCGC+AGG | + | chr4_2:6293439-6293458 | Msa0585440:CDS | 60.0% | |
| CTACCAGAGCCCCTTTCCTC+TGG | + | chr4_2:6294269-6294288 | Msa0585440:intron | 60.0% | |
| GCAAACTCTCGAAGGGGGTC+AGG | - | chr4_2:6294941-6294960 | None:intergenic | 60.0% | |
| GGGTCAGGTCCCTAACCTCC+TGG | - | chr4_2:6294748-6294767 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6292751 | 6295890 | 6292751 | ID=Msa0585440;Name=Msa0585440 |
| chr4_2 | mRNA | 6292751 | 6295890 | 6292751 | ID=Msa0585440-mRNA-1;Parent=Msa0585440;Name=Msa0585440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=154|0.6|0.83|0.83|1|1|6|300|337 |
| chr4_2 | exon | 6292751 | 6293285 | 6292751 | ID=Msa0585440-mRNA-1:exon:1534;Parent=Msa0585440-mRNA-1 |
| chr4_2 | exon | 6293398 | 6293478 | 6293398 | ID=Msa0585440-mRNA-1:exon:1535;Parent=Msa0585440-mRNA-1 |
| chr4_2 | exon | 6294647 | 6294751 | 6294647 | ID=Msa0585440-mRNA-1:exon:1536;Parent=Msa0585440-mRNA-1 |
| chr4_2 | exon | 6294896 | 6295045 | 6294896 | ID=Msa0585440-mRNA-1:exon:1537;Parent=Msa0585440-mRNA-1 |
| chr4_2 | exon | 6295157 | 6295222 | 6295157 | ID=Msa0585440-mRNA-1:exon:1538;Parent=Msa0585440-mRNA-1 |
| chr4_2 | exon | 6295360 | 6295890 | 6295360 | ID=Msa0585440-mRNA-1:exon:1539;Parent=Msa0585440-mRNA-1 |
| chr4_2 | five_prime_UTR | 6292751 | 6292904 | 6292751 | ID=Msa0585440-mRNA-1:five_prime_utr;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6292905 | 6293285 | 6292905 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6293398 | 6293478 | 6293398 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6294647 | 6294751 | 6294647 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6294896 | 6295045 | 6294896 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6295157 | 6295222 | 6295157 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | CDS | 6295360 | 6295590 | 6295360 | ID=Msa0585440-mRNA-1:cds;Parent=Msa0585440-mRNA-1 |
| chr4_2 | three_prime_UTR | 6295591 | 6295890 | 6295591 | ID=Msa0585440-mRNA-1:three_prime_utr;Parent=Msa0585440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
