Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625500 | PNX86169.1 | 89.394 | 132 | 14 | 0 | 1 | 132 | 1 | 132 | 1.82e-86 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625500 | sp|Q9LRH8|BAMS_PEA | 91.538 | 130 | 11 | 0 | 1 | 130 | 1 | 130 | 2.01e-80 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0204930 | Msa0625500 | 0.825205 | 5.322937e-54 | -8.615850e-47 |
| Msa0249830 | Msa0625500 | 0.845031 | 5.231989e-59 | -8.615850e-47 |
| Msa0346830 | Msa0625500 | 0.805046 | 1.612511e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625500 | MtrunA17_Chr4g0000131 | 97.692 | 130 | 3 | 0 | 1 | 130 | 1 | 130 | 1.39e-87 | 270 |
| Msa0625500 | MtrunA17_Chr4g0020031 | 90.769 | 130 | 12 | 0 | 1 | 130 | 1 | 130 | 5.69e-81 | 252 |
| Msa0625500 | MtrunA17_Chr7g0228111 | 84.615 | 130 | 20 | 0 | 1 | 130 | 1 | 130 | 2.07e-75 | 238 |
| Msa0625500 | MtrunA17_Chr8g0342301 | 73.846 | 130 | 34 | 0 | 1 | 130 | 1 | 130 | 9.03e-73 | 214 |
| Msa0625500 | MtrunA17_Chr8g0342281 | 72.727 | 132 | 36 | 0 | 1 | 132 | 1 | 132 | 1.14e-70 | 208 |
| Msa0625500 | MtrunA17_Chr3g0090611 | 79.412 | 68 | 14 | 0 | 1 | 68 | 1 | 68 | 2.53e-38 | 124 |
| Msa0625500 | MtrunA17_Chr8g0342331 | 75.362 | 69 | 17 | 0 | 1 | 69 | 1 | 69 | 1.19e-37 | 123 |
| Msa0625500 | MtrunA17_Chr5g0396321 | 47.727 | 132 | 68 | 1 | 1 | 132 | 1 | 131 | 2.21e-37 | 134 |
| Msa0625500 | MtrunA17_Chr6g0463721 | 44.615 | 130 | 70 | 1 | 1 | 130 | 1 | 128 | 7.86e-35 | 119 |
| Msa0625500 | MtrunA17_Chr4g0000181 | 86.154 | 65 | 9 | 0 | 66 | 130 | 1 | 65 | 1.01e-34 | 119 |
| Msa0625500 | MtrunA17_Chr6g0488881 | 46.923 | 130 | 67 | 1 | 1 | 130 | 1 | 128 | 2.36e-34 | 125 |
| Msa0625500 | MtrunA17_Chr6g0488821 | 46.763 | 139 | 65 | 3 | 1 | 130 | 1 | 139 | 1.86e-30 | 114 |
| Msa0625500 | MtrunA17_Chr3g0090601 | 80.952 | 63 | 12 | 0 | 68 | 130 | 36 | 98 | 7.91e-30 | 112 |
| Msa0625500 | MtrunA17_Chr7g0238831 | 42.857 | 140 | 70 | 1 | 1 | 130 | 1 | 140 | 5.50e-28 | 104 |
| Msa0625500 | MtrunA17_Chr8g0342321 | 70.312 | 64 | 19 | 0 | 67 | 130 | 3 | 66 | 1.28e-27 | 100 |
| Msa0625500 | MtrunA17_Chr6g0486381 | 53.623 | 69 | 30 | 1 | 1 | 67 | 1 | 69 | 1.31e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625500 | AT1G78950.1 | 67.176 | 131 | 42 | 1 | 1 | 130 | 1 | 131 | 1.87e-57 | 190 |
| Msa0625500 | AT1G78950.2 | 67.176 | 131 | 42 | 1 | 1 | 130 | 10 | 140 | 2.19e-57 | 190 |
| Msa0625500 | AT1G78960.4 | 65.672 | 134 | 45 | 1 | 1 | 133 | 1 | 134 | 1.62e-56 | 187 |
| Msa0625500 | AT1G78960.2 | 65.672 | 134 | 45 | 1 | 1 | 133 | 1 | 134 | 1.85e-56 | 187 |
| Msa0625500 | AT1G78960.1 | 65.672 | 134 | 45 | 1 | 1 | 133 | 1 | 134 | 1.85e-56 | 187 |
| Msa0625500 | AT1G78960.3 | 65.672 | 134 | 45 | 1 | 1 | 133 | 1 | 134 | 1.85e-56 | 187 |
| Msa0625500 | AT1G66960.2 | 65.649 | 131 | 44 | 1 | 1 | 130 | 10 | 140 | 4.04e-56 | 186 |
| Msa0625500 | AT1G66960.3 | 65.649 | 131 | 44 | 1 | 1 | 130 | 1 | 131 | 4.58e-56 | 186 |
| Msa0625500 | AT1G66960.1 | 65.649 | 131 | 44 | 1 | 1 | 130 | 1 | 131 | 4.58e-56 | 186 |
| Msa0625500 | AT1G66960.4 | 65.649 | 131 | 44 | 1 | 1 | 130 | 1 | 131 | 4.58e-56 | 186 |
| Msa0625500 | AT1G78970.1 | 64.885 | 131 | 45 | 1 | 1 | 130 | 1 | 131 | 2.25e-54 | 181 |
| Msa0625500 | AT1G78970.2 | 64.885 | 131 | 45 | 1 | 1 | 130 | 1 | 131 | 2.25e-54 | 181 |
| Msa0625500 | AT1G78970.3 | 64.885 | 131 | 45 | 1 | 1 | 130 | 1 | 131 | 2.25e-54 | 181 |
| Msa0625500 | AT1G78955.1 | 64.122 | 131 | 46 | 1 | 1 | 130 | 1 | 131 | 2.14e-53 | 179 |
| Msa0625500 | AT5G36150.1 | 55.725 | 131 | 57 | 1 | 1 | 130 | 1 | 131 | 1.03e-46 | 160 |
| Msa0625500 | AT5G36150.2 | 55.725 | 131 | 57 | 1 | 1 | 130 | 1 | 131 | 1.03e-46 | 160 |
| Msa0625500 | AT4G15340.2 | 55.725 | 131 | 57 | 1 | 1 | 130 | 1 | 131 | 3.19e-45 | 155 |
| Msa0625500 | AT4G15340.1 | 55.725 | 131 | 57 | 1 | 1 | 130 | 1 | 131 | 8.90e-45 | 155 |
| Msa0625500 | AT4G15370.1 | 56.489 | 131 | 56 | 1 | 1 | 130 | 1 | 131 | 1.47e-44 | 154 |
| Msa0625500 | AT4G15370.2 | 56.489 | 131 | 56 | 1 | 1 | 130 | 1 | 131 | 1.55e-44 | 154 |
| Msa0625500 | AT5G42600.1 | 54.198 | 131 | 59 | 1 | 1 | 130 | 1 | 131 | 2.86e-43 | 151 |
| Msa0625500 | AT1G78500.2 | 54.962 | 131 | 58 | 1 | 1 | 130 | 1 | 131 | 1.86e-41 | 146 |
| Msa0625500 | AT1G78500.1 | 54.962 | 131 | 58 | 1 | 1 | 130 | 1 | 131 | 1.86e-41 | 146 |
| Msa0625500 | AT5G48010.2 | 50.370 | 135 | 65 | 2 | 1 | 133 | 1 | 135 | 6.67e-39 | 139 |
| Msa0625500 | AT5G48010.1 | 50.370 | 135 | 65 | 2 | 1 | 133 | 1 | 135 | 6.97e-39 | 139 |
| Msa0625500 | AT2G07050.1 | 50.758 | 132 | 64 | 1 | 1 | 132 | 1 | 131 | 1.11e-37 | 135 |
| Msa0625500 | AT3G45130.4 | 43.609 | 133 | 68 | 3 | 1 | 130 | 1 | 129 | 1.20e-27 | 107 |
| Msa0625500 | AT3G45130.1 | 43.609 | 133 | 68 | 3 | 1 | 130 | 1 | 129 | 1.20e-27 | 107 |
| Msa0625500 | AT3G45130.5 | 43.609 | 133 | 68 | 3 | 1 | 130 | 1 | 129 | 1.20e-27 | 107 |
| Msa0625500 | AT3G45130.2 | 43.609 | 133 | 68 | 3 | 1 | 130 | 1 | 129 | 1.20e-27 | 107 |
| Msa0625500 | AT3G45130.3 | 43.609 | 133 | 68 | 3 | 1 | 130 | 1 | 129 | 1.20e-27 | 107 |
| Msa0625500 | AT3G29255.1 | 41.085 | 129 | 46 | 3 | 2 | 129 | 6 | 105 | 5.52e-24 | 96.3 |
| Msa0625500 | AT1G78955.4 | 58.462 | 65 | 27 | 0 | 66 | 130 | 2 | 66 | 3.15e-19 | 82.8 |
| Msa0625500 | AT1G78955.2 | 58.462 | 65 | 27 | 0 | 66 | 130 | 2 | 66 | 3.25e-19 | 82.8 |
| Msa0625500 | AT1G78955.3 | 58.462 | 65 | 27 | 0 | 66 | 130 | 2 | 66 | 3.50e-19 | 82.8 |
Find 30 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCACTACCTGCTTC+TGG | 0.268680 | 4_3:+4569629 | None:intergenic |
| TTGTTTGTGCTGAATAAGTA+TGG | 0.296010 | 4_3:+4569683 | None:intergenic |
| AACTTTAAGCAAACAATAGA+TGG | 0.401450 | 4_3:-4567440 | Msa0625500:CDS |
| AAGATGTGGAAGCTGAAGAT+AGG | 0.409039 | 4_3:-4569722 | Msa0625500:CDS |
| AGCCCTGCGGTGACCTCCTA+TGG | 0.452069 | 4_3:-4569550 | Msa0625500:CDS |
| ACGCCATAGGAGGTCACCGC+AGG | 0.471668 | 4_3:+4569547 | None:intergenic |
| TTTCTATGACAACAGATTCA+AGG | 0.480723 | 4_3:-4569576 | Msa0625500:CDS |
| AGCGGGCCAATGGCCATCAC+TGG | 0.481173 | 4_3:+4567328 | None:intergenic |
| CTGCGATTTGAGCGGGCCAA+TGG | 0.490121 | 4_3:+4567318 | None:intergenic |
| GATGGCGTGAAGATAGAAGA+TGG | 0.515640 | 4_3:-4567422 | Msa0625500:CDS |
| AGAGGACCTGCGATTTGAGC+GGG | 0.516769 | 4_3:+4567311 | None:intergenic |
| CACTGGTTTGCAATGCTGCT+AGG | 0.530784 | 4_3:+4567345 | None:intergenic |
| TGCAAACCAGTGATGGCCAT+TGG | 0.531457 | 4_3:-4567334 | Msa0625500:CDS |
| CATTGGCCCGCTCAAATCGC+AGG | 0.535192 | 4_3:-4567317 | Msa0625500:CDS |
| TGGAAGCTGAAGATAGGAGA+GGG | 0.548862 | 4_3:-4569716 | Msa0625500:CDS |
| GCAGCATTGCAAACCAGTGA+TGG | 0.573625 | 4_3:-4567341 | Msa0625500:CDS |
| TGGGAGTATGATCCAGAAGC+AGG | 0.576042 | 4_3:-4569641 | Msa0625500:CDS |
| GTGGAAGCTGAAGATAGGAG+AGG | 0.581318 | 4_3:-4569717 | Msa0625500:CDS |
| CGCCATAGGAGGTCACCGCA+GGG | 0.616450 | 4_3:+4569548 | None:intergenic |
| GTACCTGAAAACGCCATAGG+AGG | 0.630439 | 4_3:+4569537 | None:intergenic |
| GCAACGGCAACATTGAGAAG+AGG | 0.633052 | 4_3:-4567377 | Msa0625500:CDS |
| TAGGTACCTGAAAACGCCAT+AGG | 0.640359 | 4_3:+4569534 | None:intergenic |
| TAGAGGACCTGCGATTTGAG+CGG | 0.649619 | 4_3:+4567310 | None:intergenic |
| GATAACATATGAGAAAGCAA+CGG | 0.654676 | 4_3:-4567393 | Msa0625500:CDS |
| TGGTTTGCAATGCTGCTAGG+TGG | 0.658851 | 4_3:+4567348 | None:intergenic |
| TAGTAAGTACTCACCAAGGG+AGG | 0.660175 | 4_3:+4567278 | None:intergenic |
| TATTAGTAAGTACTCACCAA+GGG | 0.660989 | 4_3:+4567275 | None:intergenic |
| ATATTAGTAAGTACTCACCA+AGG | 0.687849 | 4_3:+4567274 | None:intergenic |
| TGTTTGTGCTGAATAAGTAT+GGG | 0.691594 | 4_3:+4569684 | None:intergenic |
| AGATTCAAGGTCAAGCCCTG+CGG | 0.734581 | 4_3:-4569563 | Msa0625500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATGAATTTTTATTTG+TGG | - | chr4_3:4567998-4568017 | Msa0625500:intron | 10.0% |
| !!! | ATTTTTTTAAATATTTTTGC+TGG | - | chr4_3:4569506-4569525 | Msa0625500:intron | 10.0% |
| !!! | GAATTGATAATGTATTTTTA+CGG | + | chr4_3:4567672-4567691 | None:intergenic | 15.0% |
| !!! | TCAATTCATACATAATTTTA+AGG | - | chr4_3:4567685-4567704 | Msa0625500:intron | 15.0% |
| !! | TTCTTTCATTCAAAATATTT+CGG | - | chr4_3:4567759-4567778 | Msa0625500:intron | 15.0% |
| !! | AAATTCATATTCTATTTGTA+TGG | - | chr4_3:4567785-4567804 | Msa0625500:intron | 15.0% |
| !! | AATAATAATCACAGTATTAA+AGG | - | chr4_3:4567926-4567945 | Msa0625500:intron | 15.0% |
| !!! | TAGTTTAACTTTTATACATT+AGG | + | chr4_3:4568038-4568057 | None:intergenic | 15.0% |
| !! | AAATTTACCAAAAATAACAA+GGG | - | chr4_3:4568368-4568387 | Msa0625500:intron | 15.0% |
| !!! | CGTTTTTTTTTTTTTTTGAG+AGG | - | chr4_3:4567875-4567894 | Msa0625500:intron | 20.0% |
| !!! | AAGTTAAACTATTTTTGAAC+AGG | - | chr4_3:4568086-4568105 | Msa0625500:intron | 20.0% |
| !!! | TTTAAAGGTAACATATTTTG+TGG | - | chr4_3:4568208-4568227 | Msa0625500:intron | 20.0% |
| !! | CAAATTTACCAAAAATAACA+AGG | - | chr4_3:4568367-4568386 | Msa0625500:intron | 20.0% |
| !! | TCTAAACAAAGCAATTAATT+TGG | + | chr4_3:4568398-4568417 | None:intergenic | 20.0% |
| !! | CATGATATAAAACAATGAAA+AGG | + | chr4_3:4568867-4568886 | None:intergenic | 20.0% |
| !! | TTCATACATTTACTTTATTG+AGG | + | chr4_3:4569200-4569219 | None:intergenic | 20.0% |
| !! | GTATGAAATTTCTTACTTTA+TGG | - | chr4_3:4569213-4569232 | Msa0625500:intron | 20.0% |
| !!! | TCAAAATGTAAATGAGTTTT+GGG | + | chr4_3:4569263-4569282 | None:intergenic | 20.0% |
| !!! | TTCAAAATGTAAATGAGTTT+TGG | + | chr4_3:4569264-4569283 | None:intergenic | 20.0% |
| !! | TTTGAAAGAAATAAAGATAG+AGG | - | chr4_3:4569278-4569297 | Msa0625500:intron | 20.0% |
| !! | TTGAAAGAAATAAAGATAGA+GGG | - | chr4_3:4569279-4569298 | Msa0625500:intron | 20.0% |
| !! | ATGTTAAATGAGTATATGAA+AGG | - | chr4_3:4569357-4569376 | Msa0625500:intron | 20.0% |
| !! | TAATAACTTCATTTAGCATT+TGG | + | chr4_3:4569418-4569437 | None:intergenic | 20.0% |
| !! | AATGAAGTTATTATTTGAGA+AGG | - | chr4_3:4569425-4569444 | Msa0625500:intron | 20.0% |
| !! | ATATTTAAAAAAATGCACCA+TGG | + | chr4_3:4569500-4569519 | None:intergenic | 20.0% |
| !!! | TTTTAAATATTTTTGCTGGT+TGG | - | chr4_3:4569510-4569529 | Msa0625500:intron | 20.0% |
| ! | AATTAAGTAGAAAGTGATGT+AGG | + | chr4_3:4567501-4567520 | None:intergenic | 25.0% |
| !!! | ATGGTGTGAATTTTTTTGAA+AGG | + | chr4_3:4567722-4567741 | None:intergenic | 25.0% |
| ! | AACAATAATGAGTTGTTGAA+TGG | + | chr4_3:4567741-4567760 | None:intergenic | 25.0% |
| ! | AACAAATGAATTACAGATAG+TGG | + | chr4_3:4567818-4567837 | None:intergenic | 25.0% |
| ! | AACCTATTACGTAACTTTAA+AGG | - | chr4_3:4568193-4568212 | Msa0625500:intron | 25.0% |
| !!! | TACCTTTAAAGTTACGTAAT+AGG | + | chr4_3:4568198-4568217 | None:intergenic | 25.0% |
| !!! | TATAGGATTTCTTTTTTGAG+AGG | + | chr4_3:4568322-4568341 | None:intergenic | 25.0% |
| ! | AGTAATGATGAGTGAATTAT+AGG | + | chr4_3:4568339-4568358 | None:intergenic | 25.0% |
| ! | AGAATTTATACTTCGATGAA+AGG | - | chr4_3:4568457-4568476 | Msa0625500:intron | 25.0% |
| ! | GAATTTATACTTCGATGAAA+GGG | - | chr4_3:4568458-4568477 | Msa0625500:intron | 25.0% |
| ! | TTAGTAAACCAAAAAACACA+CGG | - | chr4_3:4568607-4568626 | Msa0625500:intron | 25.0% |
| ! | AAAGAAGATGACAATTTCAT+TGG | + | chr4_3:4568667-4568686 | None:intergenic | 25.0% |
| !!! | TATCTTTGATTGATTTTGTG+AGG | + | chr4_3:4568809-4568828 | None:intergenic | 25.0% |
| !!! | AAATGATTTTTGGCCTTTTT+AGG | - | chr4_3:4569136-4569155 | Msa0625500:intron | 25.0% |
| !!! | AATGATTTTTGGCCTTTTTA+GGG | - | chr4_3:4569137-4569156 | Msa0625500:intron | 25.0% |
| !! | ATGATGATGTAATAAGAAGA+GGG | - | chr4_3:4569317-4569336 | Msa0625500:intron | 25.0% |
| ! | ATAATGATAGATCCTTCAAA+TGG | + | chr4_3:4569477-4569496 | None:intergenic | 25.0% |
| ! | AACTTTAAGCAAACAATAGA+TGG | - | chr4_3:4569556-4569575 | Msa0625500:CDS | 25.0% |
| TGTTTGTGCTGAATAAGTAT+GGG | + | chr4_3:4567315-4567334 | None:intergenic | 30.0% | |
| TTGTTTGTGCTGAATAAGTA+TGG | + | chr4_3:4567316-4567335 | None:intergenic | 30.0% | |
| ! | ATTCAGCACAAACAATTTTG+TGG | - | chr4_3:4567321-4567340 | Msa0625500:CDS | 30.0% |
| ! | TTCAGCACAAACAATTTTGT+GGG | - | chr4_3:4567322-4567341 | Msa0625500:CDS | 30.0% |
| TTTCTATGACAACAGATTCA+AGG | - | chr4_3:4567420-4567439 | Msa0625500:CDS | 30.0% | |
| ATTAAAACGTTAACAGCACT+TGG | + | chr4_3:4567588-4567607 | None:intergenic | 30.0% | |
| !! | AATGAATTACAGATAGTGGA+GGG | + | chr4_3:4567814-4567833 | None:intergenic | 30.0% |
| ! | AAATGAATTACAGATAGTGG+AGG | + | chr4_3:4567815-4567834 | None:intergenic | 30.0% |
| ACGTAATAGGTTAAGTAAGA+CGG | + | chr4_3:4568185-4568204 | None:intergenic | 30.0% | |
| TTGTGACATCAATATTTGTC+GGG | + | chr4_3:4568285-4568304 | None:intergenic | 30.0% | |
| GTTGTGACATCAATATTTGT+CGG | + | chr4_3:4568286-4568305 | None:intergenic | 30.0% | |
| TTACCAAAAATAACAAGGGT+TGG | - | chr4_3:4568372-4568391 | Msa0625500:intron | 30.0% | |
| ! | TTTGGATACATTTGAGTTTC+AGG | - | chr4_3:4568482-4568501 | Msa0625500:intron | 30.0% |
| ! | TTGGATACATTTGAGTTTCA+GGG | - | chr4_3:4568483-4568502 | Msa0625500:intron | 30.0% |
| TATAACAAAATAGGCTTTCG+TGG | + | chr4_3:4568545-4568564 | None:intergenic | 30.0% | |
| AAAAAACACACGGTATTGTT+GGG | - | chr4_3:4568617-4568636 | Msa0625500:intron | 30.0% | |
| !! | ATTGTCATCTTCTTTTGAAG+AGG | - | chr4_3:4568672-4568691 | Msa0625500:intron | 30.0% |
| TTGAACAAACATCTGTTAAG+TGG | - | chr4_3:4569109-4569128 | Msa0625500:intron | 30.0% | |
| TGAACAAACATCTGTTAAGT+GGG | - | chr4_3:4569110-4569129 | Msa0625500:intron | 30.0% | |
| ! | AAGTGGGAGAAAATGATTTT+TGG | - | chr4_3:4569126-4569145 | Msa0625500:intron | 30.0% |
| ! | ACACAACATTTTCCCTAAAA+AGG | + | chr4_3:4569152-4569171 | None:intergenic | 30.0% |
| ! | GATGATGATGTAATAAGAAG+AGG | - | chr4_3:4569316-4569335 | Msa0625500:intron | 30.0% |
| GATAACATATGAGAAAGCAA+CGG | - | chr4_3:4569603-4569622 | Msa0625500:CDS | 30.0% | |
| ! | ATTTTGTGGGAAGACAAACA+TGG | - | chr4_3:4567335-4567354 | Msa0625500:CDS | 35.0% |
| ! | TTTTGTGGGAAGACAAACAT+GGG | - | chr4_3:4567336-4567355 | Msa0625500:CDS | 35.0% |
| AAGTAGAAAGTGATGTAGGT+AGG | + | chr4_3:4567497-4567516 | None:intergenic | 35.0% | |
| TGTGACATCAATATTTGTCG+GGG | + | chr4_3:4568284-4568303 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAGAGGTGAGTAGT+AGG | + | chr4_3:4568311-4568330 | None:intergenic | 35.0% |
| ATACTTCGATGAAAGGGATT+TGG | - | chr4_3:4568464-4568483 | Msa0625500:intron | 35.0% | |
| !!! | CAACAATACCGTGTGTTTTT+TGG | + | chr4_3:4568618-4568637 | None:intergenic | 35.0% |
| CAAAAAACACACGGTATTGT+TGG | - | chr4_3:4568616-4568635 | Msa0625500:intron | 35.0% | |
| GAAGATGACAATTTCATTGG+CGG | + | chr4_3:4568664-4568683 | None:intergenic | 35.0% | |
| GAAGATACTAGATGATGAGA+AGG | + | chr4_3:4568724-4568743 | None:intergenic | 35.0% | |
| GACTTTGTATGTGAATGTTC+AGG | - | chr4_3:4568745-4568764 | Msa0625500:intron | 35.0% | |
| TTGTATGTGAATGTTCAGGA+AGG | - | chr4_3:4568749-4568768 | Msa0625500:intron | 35.0% | |
| AATGACGTTCACCTTTCATA+TGG | + | chr4_3:4568913-4568932 | None:intergenic | 35.0% | |
| ! | ATGAAAGGTGAACGTCATTT+TGG | - | chr4_3:4568914-4568933 | Msa0625500:intron | 35.0% |
| !! | CTTGCATTTCACTTTTCGAT+TGG | + | chr4_3:4568971-4568990 | None:intergenic | 35.0% |
| AATGGAAGTTTGGAGAAATG+AGG | + | chr4_3:4569459-4569478 | None:intergenic | 35.0% | |
| TTCTCCAAACTTCCATTTGA+AGG | - | chr4_3:4569462-4569481 | Msa0625500:intron | 35.0% | |
| AGATCCTTCAAATGGAAGTT+TGG | + | chr4_3:4569469-4569488 | None:intergenic | 35.0% | |
| GAAGGATCTATCATTATCCA+TGG | - | chr4_3:4569480-4569499 | Msa0625500:intron | 35.0% | |
| AGAAAGTGATGTAGGTAGGT+AGG | + | chr4_3:4567493-4567512 | None:intergenic | 40.0% | |
| !!! | TGGCCAACCCTTGTTATTTT+TGG | + | chr4_3:4568378-4568397 | None:intergenic | 40.0% |
| CTTTCGTGGTATATTCGTGA+AGG | + | chr4_3:4568531-4568550 | None:intergenic | 40.0% | |
| TACTGCTACCACCATATGAA+AGG | - | chr4_3:4568899-4568918 | Msa0625500:intron | 40.0% | |
| !! | AAAGGTGAACGTCATTTTGG+AGG | - | chr4_3:4568917-4568936 | Msa0625500:intron | 40.0% |
| !! | TTTTTGCTGGTTGGCATTGT+AGG | - | chr4_3:4569519-4569538 | Msa0625500:intron | 40.0% |
| ! | AAGGGAGGCATGAAAAATAG+AGG | + | chr4_3:4569706-4569725 | None:intergenic | 40.0% |
| !! | TCTATTTTTCATGCCTCCCT+TGG | - | chr4_3:4569705-4569724 | Msa0625500:CDS | 40.0% |
| TGGAAGCTGAAGATAGGAGA+GGG | - | chr4_3:4567280-4567299 | Msa0625500:CDS | 45.0% | |
| TCTTCTTCACTACCTGCTTC+TGG | + | chr4_3:4567370-4567389 | None:intergenic | 45.0% | |
| TAGGTACCTGAAAACGCCAT+AGG | + | chr4_3:4567465-4567484 | None:intergenic | 45.0% | |
| TGTAGGTAGGTAGGTGGTAT+AGG | + | chr4_3:4567484-4567503 | None:intergenic | 45.0% | |
| AAGTGATGTAGGTAGGTAGG+TGG | + | chr4_3:4567490-4567509 | None:intergenic | 45.0% | |
| TTTCATTGGCGGTGGTAAAG+CGG | + | chr4_3:4568653-4568672 | None:intergenic | 45.0% | |
| GATGACAATTTCATTGGCGG+TGG | + | chr4_3:4568661-4568680 | None:intergenic | 45.0% | |
| GACGTTCACCTTTCATATGG+TGG | + | chr4_3:4568910-4568929 | None:intergenic | 45.0% | |
| GATGGCGTGAAGATAGAAGA+TGG | - | chr4_3:4569574-4569593 | Msa0625500:CDS | 45.0% | |
| TAGTAAGTACTCACCAAGGG+AGG | + | chr4_3:4569721-4569740 | None:intergenic | 45.0% | |
| !!! | TAATTTTTTTTAAATAAGAA+TGG | + | chr4_3:4567563-4567582 | None:intergenic | 5.0% |
| !! | AATAAAAAATATAACAAAAT+AGG | + | chr4_3:4568554-4568573 | None:intergenic | 5.0% |
| GTGGAAGCTGAAGATAGGAG+AGG | - | chr4_3:4567279-4567298 | Msa0625500:CDS | 50.0% | |
| ! | TGGGAGTATGATCCAGAAGC+AGG | - | chr4_3:4567355-4567374 | Msa0625500:CDS | 50.0% |
| AGATTCAAGGTCAAGCCCTG+CGG | - | chr4_3:4567433-4567452 | Msa0625500:CDS | 50.0% | |
| ! | TGACCTCCTATGGCGTTTTC+AGG | - | chr4_3:4567456-4567475 | Msa0625500:CDS | 50.0% |
| GTACCTGAAAACGCCATAGG+AGG | + | chr4_3:4567462-4567481 | None:intergenic | 50.0% | |
| AGGGCTGCTATATATCGCGA+AGG | - | chr4_3:4568502-4568521 | Msa0625500:intron | 50.0% | |
| GCAACGGCAACATTGAGAAG+AGG | - | chr4_3:4569619-4569638 | Msa0625500:CDS | 50.0% | |
| ! | TGGTTTGCAATGCTGCTAGG+TGG | + | chr4_3:4569651-4569670 | None:intergenic | 50.0% |
| !! | CACTGGTTTGCAATGCTGCT+AGG | + | chr4_3:4569654-4569673 | None:intergenic | 50.0% |
| GCAGCATTGCAAACCAGTGA+TGG | - | chr4_3:4569655-4569674 | Msa0625500:CDS | 50.0% | |
| TGCAAACCAGTGATGGCCAT+TGG | - | chr4_3:4569662-4569681 | Msa0625500:CDS | 50.0% | |
| TAGAGGACCTGCGATTTGAG+CGG | + | chr4_3:4569689-4569708 | None:intergenic | 50.0% | |
| AGAGGACCTGCGATTTGAGC+GGG | + | chr4_3:4569688-4569707 | None:intergenic | 55.0% | |
| CTGCGATTTGAGCGGGCCAA+TGG | + | chr4_3:4569681-4569700 | None:intergenic | 60.0% | |
| CATTGGCCCGCTCAAATCGC+AGG | - | chr4_3:4569679-4569698 | Msa0625500:CDS | 60.0% | |
| AGCCCTGCGGTGACCTCCTA+TGG | - | chr4_3:4567446-4567465 | Msa0625500:CDS | 65.0% | |
| CGCCATAGGAGGTCACCGCA+GGG | + | chr4_3:4567451-4567470 | None:intergenic | 65.0% | |
| ACGCCATAGGAGGTCACCGC+AGG | + | chr4_3:4567452-4567471 | None:intergenic | 65.0% | |
| AGCGGGCCAATGGCCATCAC+TGG | + | chr4_3:4569671-4569690 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4567277 | 4569741 | 4567277 | ID=Msa0625500;Name=Msa0625500 |
| chr4_3 | mRNA | 4567277 | 4569741 | 4567277 | ID=Msa0625500-mRNA-1;Parent=Msa0625500;Name=Msa0625500-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.5|1|1|2|0|133 |
| chr4_3 | exon | 4569541 | 4569741 | 4569541 | ID=Msa0625500-mRNA-1:exon:1231;Parent=Msa0625500-mRNA-1 |
| chr4_3 | exon | 4567277 | 4567477 | 4567277 | ID=Msa0625500-mRNA-1:exon:1230;Parent=Msa0625500-mRNA-1 |
| chr4_3 | CDS | 4569541 | 4569741 | 4569541 | ID=Msa0625500-mRNA-1:cds;Parent=Msa0625500-mRNA-1 |
| chr4_3 | CDS | 4567277 | 4567477 | 4567277 | ID=Msa0625500-mRNA-1:cds;Parent=Msa0625500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
