Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625600 | KEH28582.1 | 97.656 | 128 | 1 | 1 | 1 | 128 | 1 | 126 | 2.22e-83 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625600 | sp|Q94AN4|AP2L1_ARATH | 70.543 | 129 | 35 | 1 | 3 | 128 | 20 | 148 | 5.13e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0625600 | TF | AP2/ERF-ERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625600 | Msa0663270 | 0.834109 | 3.624697e-56 | -8.615850e-47 |
| Msa0527820 | Msa0625600 | 0.819949 | 8.876326e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625600 | MtrunA17_Chr4g0002011 | 95.420 | 131 | 1 | 2 | 1 | 128 | 1 | 129 | 3.11e-85 | 251 |
| Msa0625600 | MtrunA17_Chr4g0073521 | 72.263 | 137 | 29 | 1 | 1 | 128 | 1 | 137 | 4.50e-68 | 209 |
| Msa0625600 | MtrunA17_Chr2g0305821 | 81.132 | 106 | 20 | 0 | 23 | 128 | 32 | 137 | 1.84e-55 | 170 |
| Msa0625600 | MtrunA17_Chr8g0355191 | 65.049 | 103 | 36 | 0 | 26 | 128 | 43 | 145 | 6.73e-43 | 145 |
| Msa0625600 | MtrunA17_Chr4g0072291 | 64.211 | 95 | 31 | 1 | 37 | 128 | 158 | 252 | 4.09e-40 | 139 |
| Msa0625600 | MtrunA17_Chr2g0328971 | 64.130 | 92 | 33 | 0 | 37 | 128 | 166 | 257 | 1.66e-39 | 138 |
| Msa0625600 | MtrunA17_Chr7g0216601 | 57.522 | 113 | 42 | 2 | 22 | 128 | 46 | 158 | 1.73e-38 | 133 |
| Msa0625600 | MtrunA17_Chr8g0355181 | 70.652 | 92 | 27 | 0 | 37 | 128 | 55 | 146 | 1.88e-38 | 133 |
| Msa0625600 | MtrunA17_Chr8g0355181 | 44.595 | 74 | 36 | 2 | 40 | 113 | 157 | 225 | 3.57e-11 | 58.9 |
| Msa0625600 | MtrunA17_Chr8g0343851 | 59.048 | 105 | 40 | 1 | 27 | 128 | 234 | 338 | 2.25e-38 | 135 |
| Msa0625600 | MtrunA17_Chr1g0152161 | 65.217 | 92 | 32 | 0 | 37 | 128 | 311 | 402 | 2.87e-38 | 136 |
| Msa0625600 | MtrunA17_Chr7g0249621 | 59.434 | 106 | 37 | 2 | 29 | 128 | 247 | 352 | 5.87e-38 | 135 |
| Msa0625600 | MtrunA17_Chr6g0452911 | 61.856 | 97 | 27 | 1 | 42 | 128 | 65 | 161 | 8.17e-38 | 131 |
| Msa0625600 | MtrunA17_Chr5g0412151 | 65.263 | 95 | 30 | 1 | 37 | 128 | 223 | 317 | 1.18e-37 | 133 |
| Msa0625600 | MtrunA17_Chr4g0032631 | 53.333 | 120 | 51 | 2 | 12 | 128 | 139 | 256 | 1.23e-37 | 133 |
| Msa0625600 | MtrunA17_Chr3g0135161 | 60.784 | 102 | 38 | 1 | 27 | 128 | 301 | 400 | 2.92e-37 | 133 |
| Msa0625600 | MtrunA17_Chr5g0400871 | 52.800 | 125 | 51 | 2 | 12 | 128 | 218 | 342 | 8.88e-37 | 131 |
| Msa0625600 | MtrunA17_Chr4g0054351 | 60.952 | 105 | 36 | 2 | 27 | 128 | 301 | 403 | 2.25e-36 | 130 |
| Msa0625600 | MtrunA17_Chr7g0257361 | 62.385 | 109 | 38 | 1 | 23 | 128 | 42 | 150 | 1.78e-35 | 125 |
| Msa0625600 | MtrunA17_Chr8g0362541 | 68.478 | 92 | 29 | 0 | 37 | 128 | 68 | 159 | 1.29e-33 | 120 |
| Msa0625600 | MtrunA17_Chr8g0367321 | 63.830 | 47 | 17 | 0 | 28 | 74 | 145 | 191 | 4.27e-16 | 70.9 |
| Msa0625600 | MtrunA17_Chr8g0367311 | 59.259 | 54 | 22 | 0 | 75 | 128 | 22 | 75 | 1.97e-15 | 70.1 |
| Msa0625600 | MtrunA17_Chr1g0170761 | 49.485 | 97 | 41 | 3 | 32 | 128 | 128 | 216 | 3.54e-14 | 67.4 |
| Msa0625600 | MtrunA17_Chr7g0263581 | 48.276 | 87 | 38 | 2 | 42 | 128 | 140 | 219 | 5.22e-13 | 64.3 |
| Msa0625600 | MtrunA17_Chr4g0053181 | 45.977 | 87 | 40 | 2 | 42 | 128 | 177 | 256 | 3.69e-12 | 62.0 |
| Msa0625600 | MtrunA17_Chr5g0401891 | 45.977 | 87 | 40 | 2 | 42 | 128 | 153 | 232 | 5.69e-12 | 61.2 |
| Msa0625600 | MtrunA17_Chr2g0325911 | 45.977 | 87 | 40 | 2 | 42 | 128 | 135 | 214 | 9.94e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625600 | AT1G16060.1 | 70.543 | 129 | 35 | 1 | 3 | 128 | 20 | 148 | 5.21e-51 | 165 |
| Msa0625600 | AT1G79700.1 | 79.630 | 108 | 19 | 1 | 24 | 128 | 35 | 142 | 1.36e-49 | 160 |
| Msa0625600 | AT1G79700.2 | 79.630 | 108 | 19 | 1 | 24 | 128 | 35 | 142 | 2.12e-49 | 160 |
| Msa0625600 | AT3G54320.3 | 61.538 | 117 | 33 | 3 | 24 | 128 | 39 | 155 | 4.81e-40 | 138 |
| Msa0625600 | AT3G54320.1 | 61.538 | 117 | 33 | 3 | 24 | 128 | 39 | 155 | 6.07e-40 | 138 |
| Msa0625600 | AT5G57390.2 | 64.211 | 95 | 31 | 1 | 37 | 128 | 81 | 175 | 1.68e-39 | 137 |
| Msa0625600 | AT5G57390.1 | 64.211 | 95 | 31 | 1 | 37 | 128 | 199 | 293 | 4.52e-39 | 137 |
| Msa0625600 | AT1G51190.1 | 50.000 | 130 | 62 | 1 | 2 | 128 | 151 | 280 | 5.81e-39 | 137 |
| Msa0625600 | AT5G65510.3 | 64.211 | 95 | 31 | 1 | 37 | 128 | 169 | 263 | 1.74e-38 | 132 |
| Msa0625600 | AT5G10510.2 | 63.043 | 92 | 34 | 0 | 37 | 128 | 226 | 317 | 6.66e-38 | 134 |
| Msa0625600 | AT1G72570.1 | 57.407 | 108 | 40 | 2 | 27 | 128 | 206 | 313 | 1.32e-37 | 132 |
| Msa0625600 | AT5G65510.4 | 64.211 | 95 | 31 | 1 | 37 | 128 | 169 | 263 | 1.70e-37 | 132 |
| Msa0625600 | AT5G65510.2 | 64.211 | 95 | 31 | 1 | 37 | 128 | 227 | 321 | 2.22e-37 | 132 |
| Msa0625600 | AT5G65510.1 | 64.211 | 95 | 31 | 1 | 37 | 128 | 227 | 321 | 2.22e-37 | 132 |
| Msa0625600 | AT5G17430.2 | 63.158 | 95 | 32 | 1 | 37 | 128 | 144 | 238 | 8.12e-37 | 131 |
| Msa0625600 | AT5G17430.1 | 63.158 | 95 | 32 | 1 | 37 | 128 | 206 | 300 | 8.92e-37 | 132 |
| Msa0625600 | AT3G20840.1 | 58.947 | 95 | 36 | 1 | 37 | 128 | 177 | 271 | 2.36e-36 | 130 |
| Msa0625600 | AT5G10510.7 | 61.053 | 95 | 34 | 1 | 37 | 128 | 226 | 320 | 7.07e-36 | 129 |
| Msa0625600 | AT5G10510.5 | 61.053 | 95 | 34 | 1 | 37 | 128 | 226 | 320 | 7.07e-36 | 129 |
| Msa0625600 | AT5G10510.6 | 61.053 | 95 | 34 | 1 | 37 | 128 | 264 | 358 | 8.68e-36 | 129 |
| Msa0625600 | AT5G10510.4 | 61.053 | 95 | 34 | 1 | 37 | 128 | 264 | 358 | 8.68e-36 | 129 |
| Msa0625600 | AT5G10510.1 | 61.053 | 95 | 34 | 1 | 37 | 128 | 249 | 343 | 9.54e-36 | 129 |
| Msa0625600 | AT2G41710.1 | 62.385 | 109 | 38 | 1 | 23 | 128 | 52 | 160 | 1.94e-35 | 126 |
| Msa0625600 | AT2G41710.2 | 62.385 | 109 | 38 | 1 | 23 | 128 | 52 | 160 | 2.12e-35 | 126 |
| Msa0625600 | AT2G41710.4 | 62.963 | 108 | 37 | 1 | 24 | 128 | 53 | 160 | 2.68e-35 | 126 |
| Msa0625600 | AT4G37750.1 | 60.000 | 105 | 37 | 2 | 27 | 128 | 271 | 373 | 8.66e-35 | 126 |
| Msa0625600 | AT5G10510.3 | 49.565 | 115 | 35 | 1 | 37 | 128 | 264 | 378 | 7.92e-32 | 118 |
| Msa0625600 | AT2G41710.3 | 47.552 | 143 | 37 | 2 | 24 | 128 | 53 | 195 | 1.12e-28 | 108 |
| Msa0625600 | AT2G39250.2 | 43.678 | 87 | 42 | 2 | 42 | 128 | 109 | 188 | 2.62e-17 | 75.1 |
| Msa0625600 | AT3G54320.4 | 66.667 | 54 | 18 | 0 | 75 | 128 | 36 | 89 | 3.30e-17 | 76.3 |
| Msa0625600 | AT3G54320.5 | 66.667 | 54 | 18 | 0 | 75 | 128 | 36 | 89 | 3.30e-17 | 76.3 |
| Msa0625600 | AT2G39250.1 | 43.678 | 87 | 42 | 2 | 42 | 128 | 109 | 188 | 5.17e-17 | 75.5 |
| Msa0625600 | AT1G79700.4 | 79.630 | 54 | 11 | 0 | 75 | 128 | 7 | 60 | 1.70e-16 | 72.8 |
| Msa0625600 | AT1G79700.3 | 79.630 | 54 | 11 | 0 | 75 | 128 | 13 | 66 | 1.76e-16 | 73.2 |
| Msa0625600 | AT1G16060.3 | 79.630 | 54 | 11 | 0 | 75 | 128 | 25 | 78 | 3.08e-15 | 70.1 |
| Msa0625600 | AT5G60120.4 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 2.56e-13 | 65.5 |
| Msa0625600 | AT5G60120.3 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 2.56e-13 | 65.5 |
| Msa0625600 | AT5G60120.5 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 2.56e-13 | 65.5 |
| Msa0625600 | AT5G60120.6 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 3.20e-13 | 65.5 |
| Msa0625600 | AT5G60120.1 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 3.34e-13 | 65.5 |
| Msa0625600 | AT5G60120.2 | 46.392 | 97 | 45 | 2 | 32 | 128 | 151 | 240 | 3.46e-13 | 65.1 |
| Msa0625600 | AT2G28550.1 | 45.977 | 87 | 40 | 2 | 42 | 128 | 154 | 233 | 1.04e-11 | 60.8 |
| Msa0625600 | AT2G28550.4 | 45.977 | 87 | 40 | 2 | 42 | 128 | 154 | 233 | 1.16e-11 | 60.8 |
| Msa0625600 | AT2G28550.3 | 45.977 | 87 | 40 | 2 | 42 | 128 | 154 | 233 | 1.18e-11 | 60.8 |
| Msa0625600 | AT2G28550.2 | 45.977 | 87 | 40 | 2 | 42 | 128 | 154 | 233 | 1.29e-11 | 60.1 |
| Msa0625600 | AT2G28550.6 | 45.977 | 87 | 40 | 2 | 42 | 128 | 154 | 233 | 1.29e-11 | 60.1 |
| Msa0625600 | AT5G67180.2 | 41.441 | 111 | 49 | 3 | 27 | 128 | 73 | 176 | 1.96e-11 | 60.1 |
| Msa0625600 | AT5G67180.3 | 41.441 | 111 | 49 | 3 | 27 | 128 | 73 | 176 | 2.29e-11 | 59.7 |
| Msa0625600 | AT5G67180.1 | 41.441 | 111 | 49 | 3 | 27 | 128 | 73 | 176 | 2.50e-11 | 59.7 |
| Msa0625600 | AT4G36920.1 | 44.828 | 87 | 41 | 2 | 42 | 128 | 132 | 211 | 2.58e-11 | 59.7 |
| Msa0625600 | AT4G36920.2 | 44.828 | 87 | 41 | 2 | 42 | 128 | 132 | 211 | 2.58e-11 | 59.7 |
| Msa0625600 | AT5G67180.4 | 41.441 | 111 | 49 | 3 | 27 | 128 | 73 | 176 | 2.65e-11 | 59.3 |
Find 36 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTGGAGGTGAGTTTCT+TGG | 0.219994 | 4_3:+4768944 | None:intergenic |
| CACAAAGAAGCTCAGTTTAT+AGG | 0.267290 | 4_3:-4768928 | Msa0625600:CDS |
| TGAGTAAAAGCTTCCATTCA+TGG | 0.305096 | 4_3:-4769053 | Msa0625600:exon |
| ACAAAGAAGCTCAGTTTATA+GGG | 0.307352 | 4_3:-4768927 | Msa0625600:CDS |
| TTAATAACTAAACCTTCTTA+AGG | 0.317560 | 4_3:+4767950 | None:intergenic |
| ATTTGTGGGATAAGAATTGC+TGG | 0.413847 | 4_3:-4768774 | Msa0625600:CDS |
| ACTTGGCAGCATTGAAGTAC+TGG | 0.425678 | 4_3:-4768236 | Msa0625600:CDS |
| CTTCAATGCTGCCAAGTCAT+AGG | 0.425738 | 4_3:+4768242 | None:intergenic |
| CTATAAACTGAGCTTCTTTG+TGG | 0.430666 | 4_3:+4768929 | None:intergenic |
| TGAGATTTCTTAGCCATGAA+TGG | 0.431590 | 4_3:+4769040 | None:intergenic |
| AATATATTGGATCCTTAAGA+AGG | 0.444800 | 4_3:-4767962 | None:intergenic |
| CAGTCAAAAGAAGAATATAT+TGG | 0.457176 | 4_3:-4767975 | Msa0625600:CDS |
| GTCGATATGAAGCTCATTTG+TGG | 0.458701 | 4_3:-4768789 | Msa0625600:CDS |
| AATGAATCACAAAGCAAGAA+AGG | 0.484111 | 4_3:-4768751 | Msa0625600:CDS |
| TTTCACCGCGGTGGTGGAAG+AGG | 0.486245 | 4_3:+4768985 | None:intergenic |
| ATTATCAAGAGGAGCTCAAA+GGG | 0.490116 | 4_3:-4768007 | Msa0625600:CDS |
| TCGATATGAAGCTCATTTGT+GGG | 0.492355 | 4_3:-4768788 | Msa0625600:CDS |
| CTTGGCAGCATTGAAGTACT+GGG | 0.500070 | 4_3:-4768235 | Msa0625600:CDS |
| TGCAGCACGTGCCTATGACT+TGG | 0.516501 | 4_3:-4768253 | Msa0625600:CDS |
| TTTACGTTTCACCGCGGTGG+TGG | 0.525503 | 4_3:+4768979 | None:intergenic |
| GAAAATTGAGAATTGTGTCT+TGG | 0.528761 | 4_3:+4768211 | None:intergenic |
| AATATTGTTATAGACATCGT+TGG | 0.541172 | 4_3:-4768816 | Msa0625600:intron |
| TGTTATAGACATCGTTGGAC+CGG | 0.567027 | 4_3:-4768811 | Msa0625600:intron |
| CAAATGAGCTTCATATCGAC+CGG | 0.573235 | 4_3:+4768792 | None:intergenic |
| TCAAGAGGAGCTCAAAGGGA+TGG | 0.574531 | 4_3:-4768003 | Msa0625600:CDS |
| GAGGAGCTCAAAGGGATGGA+AGG | 0.577439 | 4_3:-4767999 | Msa0625600:CDS |
| AATTATCAAGAGGAGCTCAA+AGG | 0.585976 | 4_3:-4768008 | Msa0625600:CDS |
| TTAGGTATCAAATTATCAAG+AGG | 0.587787 | 4_3:-4768018 | Msa0625600:intron |
| CAGTTTATAGGGGTGTCACA+AGG | 0.604860 | 4_3:-4768916 | Msa0625600:intron |
| ACGTTTACGTTTCACCGCGG+TGG | 0.605690 | 4_3:+4768976 | None:intergenic |
| CAAAGCAAGAAAGGAAGACA+AGG | 0.607141 | 4_3:-4768742 | Msa0625600:intron |
| TAAACTGAGCTTCTTTGTGG+AGG | 0.608474 | 4_3:+4768932 | None:intergenic |
| CAAAGAAGCTCAGTTTATAG+GGG | 0.637455 | 4_3:-4768926 | Msa0625600:CDS |
| TTCTTCCTCTTCCACCACCG+CGG | 0.640893 | 4_3:-4768990 | Msa0625600:CDS |
| TTGGCAGCATTGAAGTACTG+GGG | 0.726529 | 4_3:-4768234 | Msa0625600:CDS |
| TTTACGTTTACGTTTCACCG+CGG | 0.779773 | 4_3:+4768973 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTAAAAATTGTTGATT+TGG | - | chr4_3:4768551-4768570 | Msa0625600:intron | 15.0% |
| !! | ATGCATATAAATTTCATATA+TGG | + | chr4_3:4768962-4768981 | None:intergenic | 15.0% |
| !!! | TTATATTGTGTGTTTTATTT+TGG | - | chr4_3:4769019-4769038 | Msa0625600:CDS | 15.0% |
| !!! | TGTTTTAAAAATTGTTGATT+TGG | - | chr4_3:4768551-4768570 | Msa0625600:intron | 15.0% |
| !! | ATGCATATAAATTTCATATA+TGG | + | chr4_3:4768962-4768981 | None:intergenic | 15.0% |
| !!! | TTATATTGTGTGTTTTATTT+TGG | - | chr4_3:4769019-4769038 | Msa0625600:CDS | 15.0% |
| !!! | TTTTGTTATGTTGTTTTTGT+TGG | - | chr4_3:4768446-4768465 | Msa0625600:intron | 20.0% |
| !!! | TCAATTCTTAAAATGGATTT+TGG | + | chr4_3:4768703-4768722 | None:intergenic | 20.0% |
| !! | CAAAAAATGAAGATATATGA+AGG | + | chr4_3:4768893-4768912 | None:intergenic | 20.0% |
| !!! | CTTCATATATCTTCATTTTT+TGG | - | chr4_3:4768891-4768910 | Msa0625600:intron | 20.0% |
| !! | AGCAATATATCATCATTATT+TGG | - | chr4_3:4768914-4768933 | Msa0625600:intron | 20.0% |
| !! | TATCATCATTATTTGGTAAA+AGG | - | chr4_3:4768921-4768940 | Msa0625600:CDS | 20.0% |
| !!! | TTTTGTTATGTTGTTTTTGT+TGG | - | chr4_3:4768446-4768465 | Msa0625600:intron | 20.0% |
| !!! | TCAATTCTTAAAATGGATTT+TGG | + | chr4_3:4768703-4768722 | None:intergenic | 20.0% |
| !! | CAAAAAATGAAGATATATGA+AGG | + | chr4_3:4768893-4768912 | None:intergenic | 20.0% |
| !!! | CTTCATATATCTTCATTTTT+TGG | - | chr4_3:4768891-4768910 | Msa0625600:intron | 20.0% |
| !! | AGCAATATATCATCATTATT+TGG | - | chr4_3:4768914-4768933 | Msa0625600:intron | 20.0% |
| !! | TATCATCATTATTTGGTAAA+AGG | - | chr4_3:4768921-4768940 | Msa0625600:CDS | 20.0% |
| ! | AATATTGTTATAGACATCGT+TGG | - | chr4_3:4768246-4768265 | Msa0625600:CDS | 25.0% |
| !!! | TCCATTTTAAGAATTGAAAG+TGG | - | chr4_3:4768706-4768725 | Msa0625600:intron | 25.0% |
| ! | TCCACTTTCAATTCTTAAAA+TGG | + | chr4_3:4768710-4768729 | None:intergenic | 25.0% |
| ! | ATATTTAATGACTGCAAAGT+TGG | - | chr4_3:4768750-4768769 | Msa0625600:CDS | 25.0% |
| ! | TATTTAATGACTGCAAAGTT+GGG | - | chr4_3:4768751-4768770 | Msa0625600:CDS | 25.0% |
| !!! | GTGTGTTTTATTTTGGTTTT+AGG | - | chr4_3:4769026-4769045 | Msa0625600:CDS | 25.0% |
| ! | TTAGGTATCAAATTATCAAG+AGG | - | chr4_3:4769044-4769063 | Msa0625600:exon | 25.0% |
| !! | CAATATATTCTTCTTTTGAC+TGG | + | chr4_3:4769089-4769108 | None:intergenic | 25.0% |
| ! | CAGTCAAAAGAAGAATATAT+TGG | - | chr4_3:4769087-4769106 | Msa0625600:five_prime_UTR | 25.0% |
| ! | AATATTGTTATAGACATCGT+TGG | - | chr4_3:4768246-4768265 | Msa0625600:CDS | 25.0% |
| !!! | TCCATTTTAAGAATTGAAAG+TGG | - | chr4_3:4768706-4768725 | Msa0625600:intron | 25.0% |
| ! | TCCACTTTCAATTCTTAAAA+TGG | + | chr4_3:4768710-4768729 | None:intergenic | 25.0% |
| ! | ATATTTAATGACTGCAAAGT+TGG | - | chr4_3:4768750-4768769 | Msa0625600:CDS | 25.0% |
| ! | TATTTAATGACTGCAAAGTT+GGG | - | chr4_3:4768751-4768770 | Msa0625600:CDS | 25.0% |
| !!! | GTGTGTTTTATTTTGGTTTT+AGG | - | chr4_3:4769026-4769045 | Msa0625600:CDS | 25.0% |
| ! | TTAGGTATCAAATTATCAAG+AGG | - | chr4_3:4769044-4769063 | Msa0625600:exon | 25.0% |
| !! | CAATATATTCTTCTTTTGAC+TGG | + | chr4_3:4769089-4769108 | None:intergenic | 25.0% |
| ! | CAGTCAAAAGAAGAATATAT+TGG | - | chr4_3:4769087-4769106 | Msa0625600:five_prime_UTR | 25.0% |
| ACAAAGAAGCTCAGTTTATA+GGG | - | chr4_3:4768135-4768154 | Msa0625600:intron | 30.0% | |
| !!! | GTTTTTGTGTCCTCTAAAAT+TGG | - | chr4_3:4768213-4768232 | Msa0625600:CDS | 30.0% |
| ! | ATGAATGCTACCAATTTTAG+AGG | + | chr4_3:4768226-4768245 | None:intergenic | 30.0% |
| AATGAATCACAAAGCAAGAA+AGG | - | chr4_3:4768311-4768330 | Msa0625600:intron | 30.0% | |
| !!! | TATGTTGTTTTTGTTGGTGA+TGG | - | chr4_3:4768452-4768471 | Msa0625600:intron | 30.0% |
| GACACAAATTAATCATACCT+AGG | + | chr4_3:4768507-4768526 | None:intergenic | 30.0% | |
| !! | TGTCAAATGAGTTTTAGTGA+AGG | - | chr4_3:4768603-4768622 | Msa0625600:intron | 30.0% |
| GAAACAAGTAAATTTCCGTT+AGG | + | chr4_3:4768656-4768675 | None:intergenic | 30.0% | |
| !!! | AAAGTTGGGTTTGTTTTGTT+AGG | - | chr4_3:4768765-4768784 | Msa0625600:CDS | 30.0% |
| !!! | AAGTTGGGTTTGTTTTGTTA+GGG | - | chr4_3:4768766-4768785 | Msa0625600:CDS | 30.0% |
| GAAAATTGAGAATTGTGTCT+TGG | + | chr4_3:4768854-4768873 | None:intergenic | 30.0% | |
| ACAAAGAAGCTCAGTTTATA+GGG | - | chr4_3:4768135-4768154 | Msa0625600:intron | 30.0% | |
| !!! | GTTTTTGTGTCCTCTAAAAT+TGG | - | chr4_3:4768213-4768232 | Msa0625600:CDS | 30.0% |
| ! | ATGAATGCTACCAATTTTAG+AGG | + | chr4_3:4768226-4768245 | None:intergenic | 30.0% |
| AATGAATCACAAAGCAAGAA+AGG | - | chr4_3:4768311-4768330 | Msa0625600:intron | 30.0% | |
| !!! | TATGTTGTTTTTGTTGGTGA+TGG | - | chr4_3:4768452-4768471 | Msa0625600:intron | 30.0% |
| GACACAAATTAATCATACCT+AGG | + | chr4_3:4768507-4768526 | None:intergenic | 30.0% | |
| !! | TGTCAAATGAGTTTTAGTGA+AGG | - | chr4_3:4768603-4768622 | Msa0625600:intron | 30.0% |
| GAAACAAGTAAATTTCCGTT+AGG | + | chr4_3:4768656-4768675 | None:intergenic | 30.0% | |
| !!! | AAAGTTGGGTTTGTTTTGTT+AGG | - | chr4_3:4768765-4768784 | Msa0625600:CDS | 30.0% |
| !!! | AAGTTGGGTTTGTTTTGTTA+GGG | - | chr4_3:4768766-4768785 | Msa0625600:CDS | 30.0% |
| GAAAATTGAGAATTGTGTCT+TGG | + | chr4_3:4768854-4768873 | None:intergenic | 30.0% | |
| TGAGTAAAAGCTTCCATTCA+TGG | - | chr4_3:4768009-4768028 | Msa0625600:CDS | 35.0% | |
| TGAGATTTCTTAGCCATGAA+TGG | + | chr4_3:4768025-4768044 | None:intergenic | 35.0% | |
| CTATAAACTGAGCTTCTTTG+TGG | + | chr4_3:4768136-4768155 | None:intergenic | 35.0% | |
| CACAAAGAAGCTCAGTTTAT+AGG | - | chr4_3:4768134-4768153 | Msa0625600:intron | 35.0% | |
| CAAAGAAGCTCAGTTTATAG+GGG | - | chr4_3:4768136-4768155 | Msa0625600:intron | 35.0% | |
| TCGATATGAAGCTCATTTGT+GGG | - | chr4_3:4768274-4768293 | Msa0625600:CDS | 35.0% | |
| ATTTGTGGGATAAGAATTGC+TGG | - | chr4_3:4768288-4768307 | Msa0625600:intron | 35.0% | |
| ATTGGATATGCAGTATACCT+AGG | - | chr4_3:4768487-4768506 | Msa0625600:intron | 35.0% | |
| ! | TTTGGCATTGAGAAACCAAA+TGG | - | chr4_3:4768569-4768588 | Msa0625600:intron | 35.0% |
| !! | GTTTTAGTGAAGGTCGAATT+AGG | - | chr4_3:4768613-4768632 | Msa0625600:intron | 35.0% |
| AATCCAAATTCGAGTCCTAA+CGG | - | chr4_3:4768638-4768657 | Msa0625600:intron | 35.0% | |
| !!! | AGTTGGGTTTGTTTTGTTAG+GGG | - | chr4_3:4768767-4768786 | Msa0625600:CDS | 35.0% |
| AATTATCAAGAGGAGCTCAA+AGG | - | chr4_3:4769054-4769073 | Msa0625600:exon | 35.0% | |
| ATTATCAAGAGGAGCTCAAA+GGG | - | chr4_3:4769055-4769074 | Msa0625600:exon | 35.0% | |
| TGAGTAAAAGCTTCCATTCA+TGG | - | chr4_3:4768009-4768028 | Msa0625600:CDS | 35.0% | |
| TGAGATTTCTTAGCCATGAA+TGG | + | chr4_3:4768025-4768044 | None:intergenic | 35.0% | |
| CTATAAACTGAGCTTCTTTG+TGG | + | chr4_3:4768136-4768155 | None:intergenic | 35.0% | |
| CACAAAGAAGCTCAGTTTAT+AGG | - | chr4_3:4768134-4768153 | Msa0625600:intron | 35.0% | |
| CAAAGAAGCTCAGTTTATAG+GGG | - | chr4_3:4768136-4768155 | Msa0625600:intron | 35.0% | |
| TCGATATGAAGCTCATTTGT+GGG | - | chr4_3:4768274-4768293 | Msa0625600:CDS | 35.0% | |
| ATTTGTGGGATAAGAATTGC+TGG | - | chr4_3:4768288-4768307 | Msa0625600:intron | 35.0% | |
| ATTGGATATGCAGTATACCT+AGG | - | chr4_3:4768487-4768506 | Msa0625600:intron | 35.0% | |
| ! | TTTGGCATTGAGAAACCAAA+TGG | - | chr4_3:4768569-4768588 | Msa0625600:intron | 35.0% |
| !! | GTTTTAGTGAAGGTCGAATT+AGG | - | chr4_3:4768613-4768632 | Msa0625600:intron | 35.0% |
| AATCCAAATTCGAGTCCTAA+CGG | - | chr4_3:4768638-4768657 | Msa0625600:intron | 35.0% | |
| !!! | AGTTGGGTTTGTTTTGTTAG+GGG | - | chr4_3:4768767-4768786 | Msa0625600:CDS | 35.0% |
| AATTATCAAGAGGAGCTCAA+AGG | - | chr4_3:4769054-4769073 | Msa0625600:exon | 35.0% | |
| ATTATCAAGAGGAGCTCAAA+GGG | - | chr4_3:4769055-4769074 | Msa0625600:exon | 35.0% | |
| TTTACGTTTACGTTTCACCG+CGG | + | chr4_3:4768092-4768111 | None:intergenic | 40.0% | |
| TAAACTGAGCTTCTTTGTGG+AGG | + | chr4_3:4768133-4768152 | None:intergenic | 40.0% | |
| TGTTATAGACATCGTTGGAC+CGG | - | chr4_3:4768251-4768270 | Msa0625600:CDS | 40.0% | |
| CAAATGAGCTTCATATCGAC+CGG | + | chr4_3:4768273-4768292 | None:intergenic | 40.0% | |
| GTCGATATGAAGCTCATTTG+TGG | - | chr4_3:4768273-4768292 | Msa0625600:CDS | 40.0% | |
| CAAAGCAAGAAAGGAAGACA+AGG | - | chr4_3:4768320-4768339 | Msa0625600:intron | 40.0% | |
| !!! | GTTTTTGTTGGTGATGGCAA+TGG | - | chr4_3:4768458-4768477 | Msa0625600:intron | 40.0% |
| TGATGGCAATGGAAATCGAT+TGG | - | chr4_3:4768469-4768488 | Msa0625600:intron | 40.0% | |
| GACATTTGAATCCAGCCATT+TGG | + | chr4_3:4768587-4768606 | None:intergenic | 40.0% | |
| TTTCCGTTAGGACTCGAATT+TGG | + | chr4_3:4768644-4768663 | None:intergenic | 40.0% | |
| TGAAAGTGGATAGTAGCTAG+TGG | - | chr4_3:4768720-4768739 | Msa0625600:intron | 40.0% | |
| GAAAGTGGATAGTAGCTAGT+GGG | - | chr4_3:4768721-4768740 | Msa0625600:intron | 40.0% | |
| TTTACGTTTACGTTTCACCG+CGG | + | chr4_3:4768092-4768111 | None:intergenic | 40.0% | |
| TAAACTGAGCTTCTTTGTGG+AGG | + | chr4_3:4768133-4768152 | None:intergenic | 40.0% | |
| TGTTATAGACATCGTTGGAC+CGG | - | chr4_3:4768251-4768270 | Msa0625600:CDS | 40.0% | |
| CAAATGAGCTTCATATCGAC+CGG | + | chr4_3:4768273-4768292 | None:intergenic | 40.0% | |
| GTCGATATGAAGCTCATTTG+TGG | - | chr4_3:4768273-4768292 | Msa0625600:CDS | 40.0% | |
| CAAAGCAAGAAAGGAAGACA+AGG | - | chr4_3:4768320-4768339 | Msa0625600:intron | 40.0% | |
| !!! | GTTTTTGTTGGTGATGGCAA+TGG | - | chr4_3:4768458-4768477 | Msa0625600:intron | 40.0% |
| TGATGGCAATGGAAATCGAT+TGG | - | chr4_3:4768469-4768488 | Msa0625600:intron | 40.0% | |
| GACATTTGAATCCAGCCATT+TGG | + | chr4_3:4768587-4768606 | None:intergenic | 40.0% | |
| TTTCCGTTAGGACTCGAATT+TGG | + | chr4_3:4768644-4768663 | None:intergenic | 40.0% | |
| TGAAAGTGGATAGTAGCTAG+TGG | - | chr4_3:4768720-4768739 | Msa0625600:intron | 40.0% | |
| GAAAGTGGATAGTAGCTAGT+GGG | - | chr4_3:4768721-4768740 | Msa0625600:intron | 40.0% | |
| CTTTGTGGAGGTGAGTTTCT+TGG | + | chr4_3:4768121-4768140 | None:intergenic | 45.0% | |
| !! | CAGTTTATAGGGGTGTCACA+AGG | - | chr4_3:4768146-4768165 | Msa0625600:intron | 45.0% |
| GCATTGAGAAACCAAATGGC+TGG | - | chr4_3:4768573-4768592 | Msa0625600:intron | 45.0% | |
| TTCGTATCGTAGTCGAACTG+AGG | - | chr4_3:4768673-4768692 | Msa0625600:intron | 45.0% | |
| CTTCAATGCTGCCAAGTCAT+AGG | + | chr4_3:4768823-4768842 | None:intergenic | 45.0% | |
| ! | ACTTGGCAGCATTGAAGTAC+TGG | - | chr4_3:4768826-4768845 | Msa0625600:intron | 45.0% |
| ! | CTTGGCAGCATTGAAGTACT+GGG | - | chr4_3:4768827-4768846 | Msa0625600:intron | 45.0% |
| !! | TTGGCAGCATTGAAGTACTG+GGG | - | chr4_3:4768828-4768847 | Msa0625600:intron | 45.0% |
| CTTTGTGGAGGTGAGTTTCT+TGG | + | chr4_3:4768121-4768140 | None:intergenic | 45.0% | |
| !! | CAGTTTATAGGGGTGTCACA+AGG | - | chr4_3:4768146-4768165 | Msa0625600:intron | 45.0% |
| GCATTGAGAAACCAAATGGC+TGG | - | chr4_3:4768573-4768592 | Msa0625600:intron | 45.0% | |
| TTCGTATCGTAGTCGAACTG+AGG | - | chr4_3:4768673-4768692 | Msa0625600:intron | 45.0% | |
| CTTCAATGCTGCCAAGTCAT+AGG | + | chr4_3:4768823-4768842 | None:intergenic | 45.0% | |
| ! | ACTTGGCAGCATTGAAGTAC+TGG | - | chr4_3:4768826-4768845 | Msa0625600:intron | 45.0% |
| ! | CTTGGCAGCATTGAAGTACT+GGG | - | chr4_3:4768827-4768846 | Msa0625600:intron | 45.0% |
| !! | TTGGCAGCATTGAAGTACTG+GGG | - | chr4_3:4768828-4768847 | Msa0625600:intron | 45.0% |
| TCAAGAGGAGCTCAAAGGGA+TGG | - | chr4_3:4769059-4769078 | Msa0625600:five_prime_UTR | 50.0% | |
| TCAAGAGGAGCTCAAAGGGA+TGG | - | chr4_3:4769059-4769078 | Msa0625600:five_prime_UTR | 50.0% | |
| TTCTTCCTCTTCCACCACCG+CGG | - | chr4_3:4768072-4768091 | Msa0625600:intron | 55.0% | |
| TTTACGTTTCACCGCGGTGG+TGG | + | chr4_3:4768086-4768105 | None:intergenic | 55.0% | |
| ACGTTTACGTTTCACCGCGG+TGG | + | chr4_3:4768089-4768108 | None:intergenic | 55.0% | |
| TGCAGCACGTGCCTATGACT+TGG | - | chr4_3:4768809-4768828 | Msa0625600:intron | 55.0% | |
| GAGGAGCTCAAAGGGATGGA+AGG | - | chr4_3:4769063-4769082 | Msa0625600:five_prime_UTR | 55.0% | |
| TTCTTCCTCTTCCACCACCG+CGG | - | chr4_3:4768072-4768091 | Msa0625600:intron | 55.0% | |
| TTTACGTTTCACCGCGGTGG+TGG | + | chr4_3:4768086-4768105 | None:intergenic | 55.0% | |
| ACGTTTACGTTTCACCGCGG+TGG | + | chr4_3:4768089-4768108 | None:intergenic | 55.0% | |
| TGCAGCACGTGCCTATGACT+TGG | - | chr4_3:4768809-4768828 | Msa0625600:intron | 55.0% | |
| GAGGAGCTCAAAGGGATGGA+AGG | - | chr4_3:4769063-4769082 | Msa0625600:five_prime_UTR | 55.0% | |
| !! | TTTCACCGCGGTGGTGGAAG+AGG | + | chr4_3:4768080-4768099 | None:intergenic | 60.0% |
| !! | TTTCACCGCGGTGGTGGAAG+AGG | + | chr4_3:4768080-4768099 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4767965 | 4769119 | 4767965 | ID=Msa0625600;Name=Msa0625600 |
| chr4_3 | mRNA | 4767965 | 4769119 | 4767965 | ID=Msa0625600-mRNA-1;Parent=Msa0625600;Name=Msa0625600-mRNA-1;_AED=0.19;_eAED=0.19;_QI=63|1|0.75|1|1|0.75|4|0|128 |
| chr4_3 | exon | 4767965 | 4768036 | 4767965 | ID=Msa0625600-mRNA-1:exon:1320;Parent=Msa0625600-mRNA-1 |
| chr4_3 | exon | 4768209 | 4768297 | 4768209 | ID=Msa0625600-mRNA-1:exon:1319;Parent=Msa0625600-mRNA-1 |
| chr4_3 | exon | 4768743 | 4768825 | 4768743 | ID=Msa0625600-mRNA-1:exon:1318;Parent=Msa0625600-mRNA-1 |
| chr4_3 | exon | 4768917 | 4769119 | 4768917 | ID=Msa0625600-mRNA-1:exon:1317;Parent=Msa0625600-mRNA-1 |
| chr4_3 | five_prime_UTR | 4769057 | 4769119 | 4769057 | ID=Msa0625600-mRNA-1:five_prime_utr;Parent=Msa0625600-mRNA-1 |
| chr4_3 | CDS | 4768917 | 4769056 | 4768917 | ID=Msa0625600-mRNA-1:cds;Parent=Msa0625600-mRNA-1 |
| chr4_3 | CDS | 4768743 | 4768825 | 4768743 | ID=Msa0625600-mRNA-1:cds;Parent=Msa0625600-mRNA-1 |
| chr4_3 | CDS | 4768209 | 4768297 | 4768209 | ID=Msa0625600-mRNA-1:cds;Parent=Msa0625600-mRNA-1 |
| chr4_3 | CDS | 4767965 | 4768036 | 4767965 | ID=Msa0625600-mRNA-1:cds;Parent=Msa0625600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
