Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527820 | KEH28582.1 | 96.626 | 326 | 8 | 2 | 1 | 325 | 1 | 324 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527820 | sp|Q94AN4|AP2L1_ARATH | 59.816 | 326 | 125 | 3 | 3 | 324 | 20 | 343 | 2.56e-112 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527820 | A0A072UFX2 | 96.626 | 326 | 8 | 2 | 1 | 325 | 1 | 324 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0527820 | TF | AP2/ERF-AP2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0527820 | 0.807516 | 4.864546e-50 | -8.615850e-47 |
| Msa0012940 | Msa0527820 | 0.803353 | 3.629410e-49 | -8.615850e-47 |
| Msa0035120 | Msa0527820 | 0.836863 | 7.293904e-57 | -8.615850e-47 |
| Msa0075450 | Msa0527820 | 0.814189 | 1.748306e-51 | -8.615850e-47 |
| Msa0077560 | Msa0527820 | 0.810801 | 9.622041e-51 | -8.615850e-47 |
| Msa0081520 | Msa0527820 | 0.801507 | 8.716613e-49 | -8.615850e-47 |
| Msa0083730 | Msa0527820 | 0.800754 | 1.242451e-48 | -8.615850e-47 |
| Msa0089980 | Msa0527820 | 0.811566 | 6.565590e-51 | -8.615850e-47 |
| Msa0090010 | Msa0527820 | 0.809404 | 1.923765e-50 | -8.615850e-47 |
| Msa0093850 | Msa0527820 | 0.823113 | 1.649771e-53 | -8.615850e-47 |
| Msa0094780 | Msa0527820 | 0.813567 | 2.397800e-51 | -8.615850e-47 |
| Msa0106620 | Msa0527820 | 0.813619 | 2.335137e-51 | -8.615850e-47 |
| Msa0130110 | Msa0527820 | 0.804753 | 1.857087e-49 | -8.615850e-47 |
| Msa0141400 | Msa0527820 | 0.800952 | 1.131936e-48 | -8.615850e-47 |
| Msa0174450 | Msa0527820 | 0.804742 | 1.866726e-49 | -8.615850e-47 |
| Msa0175930 | Msa0527820 | 0.809511 | 1.825200e-50 | -8.615850e-47 |
| Msa0176150 | Msa0527820 | 0.805455 | 1.324277e-49 | -8.615850e-47 |
| Msa0176170 | Msa0527820 | 0.810264 | 1.256872e-50 | -8.615850e-47 |
| Msa0209140 | Msa0527820 | 0.805710 | 1.170394e-49 | -8.615850e-47 |
| Msa0221000 | Msa0527820 | 0.800046 | 1.731845e-48 | -8.615850e-47 |
| Msa0225480 | Msa0527820 | 0.826176 | 3.131769e-54 | -8.615850e-47 |
| Msa0225860 | Msa0527820 | 0.820825 | 5.588720e-53 | -8.615850e-47 |
| Msa0375640 | Msa0527820 | 0.813497 | 2.484741e-51 | -8.615850e-47 |
| Msa0378720 | Msa0527820 | 0.805289 | 1.434634e-49 | -8.615850e-47 |
| Msa0385090 | Msa0527820 | 0.816066 | 6.696964e-52 | -8.615850e-47 |
| Msa0424160 | Msa0527820 | 0.829028 | 6.473074e-55 | -8.615850e-47 |
| Msa0428370 | Msa0527820 | 0.813358 | 2.665275e-51 | -8.615850e-47 |
| Msa0435370 | Msa0527820 | 0.819390 | 1.190876e-52 | -8.615850e-47 |
| Msa0435420 | Msa0527820 | 0.832002 | 1.212156e-55 | -8.615850e-47 |
| Msa0435570 | Msa0527820 | 0.830196 | 3.364522e-55 | -8.615850e-47 |
| Msa0450400 | Msa0527820 | -0.807983 | 3.871497e-50 | -8.615850e-47 |
| Msa0474730 | Msa0527820 | 0.814480 | 1.508220e-51 | -8.615850e-47 |
| Msa0240900 | Msa0527820 | 0.801169 | 1.022199e-48 | -8.615850e-47 |
| Msa0241830 | Msa0527820 | 0.817798 | 2.735665e-52 | -8.615850e-47 |
| Msa0260510 | Msa0527820 | 0.802949 | 4.400360e-49 | -8.615850e-47 |
| Msa0261170 | Msa0527820 | 0.825315 | 5.013639e-54 | -8.615850e-47 |
| Msa0279850 | Msa0527820 | 0.838034 | 3.654067e-57 | -8.615850e-47 |
| Msa0288620 | Msa0527820 | 0.808489 | 3.021005e-50 | -8.615850e-47 |
| Msa0300320 | Msa0527820 | 0.802925 | 4.452152e-49 | -8.615850e-47 |
| Msa0304570 | Msa0527820 | 0.803821 | 2.903197e-49 | -8.615850e-47 |
| Msa0307270 | Msa0527820 | 0.837037 | 6.583234e-57 | -8.615850e-47 |
| Msa0317970 | Msa0527820 | 0.810936 | 8.995060e-51 | -8.615850e-47 |
| Msa0322900 | Msa0527820 | 0.850350 | 1.797869e-60 | -8.615850e-47 |
| Msa0337700 | Msa0527820 | 0.800982 | 1.115978e-48 | -8.615850e-47 |
| Msa0341690 | Msa0527820 | 0.823074 | 1.684369e-53 | -8.615850e-47 |
| Msa0361910 | Msa0527820 | 0.814036 | 1.890298e-51 | -8.615850e-47 |
| Msa0483100 | Msa0527820 | 0.810715 | 1.004324e-50 | -8.615850e-47 |
| Msa0485240 | Msa0527820 | 0.829978 | 3.802635e-55 | -8.615850e-47 |
| Msa0509550 | Msa0527820 | 0.800774 | 1.230953e-48 | -8.615850e-47 |
| Msa0515800 | Msa0527820 | 0.818132 | 2.299580e-52 | -8.615850e-47 |
| Msa0518030 | Msa0527820 | 0.832058 | 1.173892e-55 | -8.615850e-47 |
| Msa0519760 | Msa0527820 | 0.815030 | 1.139159e-51 | -8.615850e-47 |
| Msa0519810 | Msa0527820 | 0.805629 | 1.217042e-49 | -8.615850e-47 |
| Msa0519840 | Msa0527820 | 0.811682 | 6.195414e-51 | -8.615850e-47 |
| Msa0527820 | Msa0534400 | 0.818999 | 1.462131e-52 | -8.615850e-47 |
| Msa0527820 | Msa0556010 | 0.806848 | 6.739255e-50 | -8.615850e-47 |
| Msa0527820 | Msa0572750 | 0.806642 | 7.451337e-50 | -8.615850e-47 |
| Msa0527820 | Msa0573850 | 0.803829 | 2.891437e-49 | -8.615850e-47 |
| Msa0527820 | Msa0580370 | 0.813025 | 3.153539e-51 | -8.615850e-47 |
| Msa0527820 | Msa0581690 | 0.807388 | 5.180312e-50 | -8.615850e-47 |
| Msa0527820 | Msa0582480 | 0.938776 | 3.841394e-99 | -8.615850e-47 |
| Msa0527820 | Msa0583360 | -0.807016 | 6.210308e-50 | -8.615850e-47 |
| Msa0527820 | Msa0586220 | 0.952273 | 3.453490e-110 | -8.615850e-47 |
| Msa0527820 | Msa0590640 | 0.823856 | 1.105413e-53 | -8.615850e-47 |
| Msa0527820 | Msa0597770 | 0.826489 | 2.638450e-54 | -8.615850e-47 |
| Msa0527820 | Msa0614000 | 0.814465 | 1.519915e-51 | -8.615850e-47 |
| Msa0527820 | Msa0619420 | 0.818414 | 1.984916e-52 | -8.615850e-47 |
| Msa0527820 | Msa0624900 | 0.829580 | 4.754140e-55 | -8.615850e-47 |
| Msa0527820 | Msa0624940 | 0.804904 | 1.726657e-49 | -8.615850e-47 |
| Msa0527820 | Msa0625600 | 0.819949 | 8.876326e-53 | -8.615850e-47 |
| Msa0527820 | Msa0626270 | 0.850549 | 1.580932e-60 | -8.615850e-47 |
| Msa0527820 | Msa0626450 | 0.813482 | 2.502686e-51 | -8.615850e-47 |
| Msa0527820 | Msa0626460 | 0.851425 | 8.953166e-61 | -8.615850e-47 |
| Msa0527820 | Msa0626490 | 0.811758 | 5.963951e-51 | -8.615850e-47 |
| Msa0527820 | Msa0630940 | 0.838775 | 2.354034e-57 | -8.615850e-47 |
| Msa0527820 | Msa0638480 | 0.836512 | 8.961636e-57 | -8.615850e-47 |
| Msa0527820 | Msa0644800 | 0.801037 | 1.087876e-48 | -8.615850e-47 |
| Msa0527820 | Msa0652770 | 0.804428 | 2.170153e-49 | -8.615850e-47 |
| Msa0527820 | Msa0663270 | 0.922826 | 5.925344e-89 | -8.615850e-47 |
| Msa0527820 | Msa0664090 | 0.965824 | 4.156865e-125 | -8.615850e-47 |
| Msa0527820 | Msa0664150 | 0.887236 | 1.704370e-72 | -8.615850e-47 |
| Msa0527820 | Msa0664540 | 0.864259 | 1.383169e-64 | -8.615850e-47 |
| Msa0527820 | Msa0664600 | 0.816014 | 6.878221e-52 | -8.615850e-47 |
| Msa0527820 | Msa0669180 | 0.830584 | 2.704945e-55 | -8.615850e-47 |
| Msa0527820 | Msa0692880 | 0.824614 | 7.337080e-54 | -8.615850e-47 |
| Msa0527820 | Msa0693330 | 0.823060 | 1.697520e-53 | -8.615850e-47 |
| Msa0527820 | Msa0698100 | 0.808249 | 3.399068e-50 | -8.615850e-47 |
| Msa0527820 | Msa0702720 | 0.816278 | 6.004226e-52 | -8.615850e-47 |
| Msa0527820 | Msa0706760 | 0.805244 | 1.465697e-49 | -8.615850e-47 |
| Msa0527820 | Msa0713680 | 0.825894 | 3.654117e-54 | -8.615850e-47 |
| Msa0527820 | Msa0721020 | 0.833190 | 6.149297e-56 | -8.615850e-47 |
| Msa0527820 | Msa0721080 | 0.815630 | 8.376695e-52 | -8.615850e-47 |
| Msa0527820 | Msa0795870 | 0.818304 | 2.101935e-52 | -8.615850e-47 |
| Msa0527820 | Msa0804250 | 0.832819 | 7.605699e-56 | -8.615850e-47 |
| Msa0527820 | Msa0833650 | 0.817810 | 2.718890e-52 | -8.615850e-47 |
| Msa0527820 | Msa0860620 | 0.805543 | 1.269154e-49 | -8.615850e-47 |
| Msa0527820 | Msa0871720 | 0.818006 | 2.454871e-52 | -8.615850e-47 |
| Msa0527820 | Msa0878280 | 0.814793 | 1.285620e-51 | -8.615850e-47 |
| Msa0527820 | Msa0881090 | 0.837099 | 6.347283e-57 | -8.615850e-47 |
| Msa0527820 | Msa0903070 | 0.800655 | 1.301559e-48 | -8.615850e-47 |
| Msa0527820 | Msa0934140 | 0.813418 | 2.585847e-51 | -8.615850e-47 |
| Msa0527820 | Msa0937020 | 0.804321 | 2.285205e-49 | -8.615850e-47 |
| Msa0527820 | Msa0945190 | 0.805714 | 1.168476e-49 | -8.615850e-47 |
| Msa0527820 | Msa0979180 | 0.829573 | 4.772032e-55 | -8.615850e-47 |
| Msa0527820 | Msa1002350 | 0.811002 | 8.706049e-51 | -8.615850e-47 |
| Msa0527820 | Msa1012800 | 0.818764 | 1.652890e-52 | -8.615850e-47 |
| Msa0527820 | Msa1043330 | 0.807970 | 3.896811e-50 | -8.615850e-47 |
| Msa0527820 | Msa1044470 | 0.896822 | 2.550581e-76 | -8.615850e-47 |
| Msa0527820 | Msa1072940 | 0.814002 | 1.922882e-51 | -8.615850e-47 |
| Msa0527820 | Msa1074220 | 0.811415 | 7.082785e-51 | -8.615850e-47 |
| Msa0527820 | Msa1085330 | 0.801252 | 9.828350e-49 | -8.615850e-47 |
| Msa0527820 | Msa1089450 | 0.821145 | 4.717843e-53 | -8.615850e-47 |
| Msa0527820 | Msa1113340 | 0.809444 | 1.886792e-50 | -8.615850e-47 |
| Msa0527820 | Msa1127590 | 0.816586 | 5.123326e-52 | -8.615850e-47 |
| Msa0527820 | Msa1132840 | 0.816493 | 5.376081e-52 | -8.615850e-47 |
| Msa0527820 | Msa1145580 | 0.821082 | 4.876997e-53 | -8.615850e-47 |
| Msa0527820 | Msa1145810 | 0.805742 | 1.152481e-49 | -8.615850e-47 |
| Msa0527820 | Msa1160920 | 0.824730 | 6.891214e-54 | -8.615850e-47 |
| Msa0527820 | Msa1162770 | 0.800951 | 1.132611e-48 | -8.615850e-47 |
| Msa0527820 | Msa1165090 | 0.810659 | 1.032508e-50 | -8.615850e-47 |
| Msa0527820 | Msa1192570 | 0.801582 | 8.413649e-49 | -8.615850e-47 |
| Msa0527820 | Msa1208950 | 0.805485 | 1.304880e-49 | -8.615850e-47 |
| Msa0527820 | Msa1217210 | 0.839343 | 1.676665e-57 | -8.615850e-47 |
| Msa0527820 | Msa1219000 | 0.811041 | 8.536356e-51 | -8.615850e-47 |
| Msa0527820 | Msa1222350 | 0.832336 | 1.002186e-55 | -8.615850e-47 |
| Msa0527820 | Msa1225860 | -0.809911 | 1.497110e-50 | -8.615850e-47 |
| Msa0527820 | Msa1237740 | 0.816055 | 6.733846e-52 | -8.615850e-47 |
| Msa0527820 | Msa1268240 | 0.813813 | 2.116475e-51 | -8.615850e-47 |
| Msa0527820 | Msa1318170 | 0.818153 | 2.274288e-52 | -8.615850e-47 |
| Msa0527820 | Msa1320670 | 0.812014 | 5.245826e-51 | -8.615850e-47 |
| Msa0527820 | Msa1341840 | 0.824212 | 9.119861e-54 | -8.615850e-47 |
| Msa0527820 | Msa1348090 | 0.808592 | 2.871563e-50 | -8.615850e-47 |
| Msa0527820 | Msa1369690 | 0.807305 | 5.394447e-50 | -8.615850e-47 |
| Msa0527820 | Msa1388600 | 0.818542 | 1.857042e-52 | -8.615850e-47 |
| Msa0527820 | Msa1393820 | 0.806857 | 6.710229e-50 | -8.615850e-47 |
| Msa0527820 | Msa1411500 | 0.816383 | 5.689549e-52 | -8.615850e-47 |
| Msa0527820 | Msa1412000 | 0.811184 | 7.949414e-51 | -8.615850e-47 |
| Msa0527820 | Msa1418240 | 0.835590 | 1.536029e-56 | -8.615850e-47 |
| Msa0527820 | Msa1427110 | 0.819004 | 1.458257e-52 | -8.615850e-47 |
| Msa0527820 | Msa1427200 | 0.801330 | 9.475862e-49 | -8.615850e-47 |
| Msa0527820 | Msa1440960 | 0.805961 | 1.036515e-49 | -8.615850e-47 |
| Msa0527820 | Msa1461370 | 0.816037 | 6.798055e-52 | -8.615850e-47 |
| Msa0527820 | Msa1461540 | 0.829675 | 4.507329e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527820 | MtrunA17_Chr4g0002011 | 95.745 | 329 | 8 | 3 | 1 | 325 | 1 | 327 | 0.0 | 641 |
| Msa0527820 | MtrunA17_Chr4g0073521 | 59.280 | 361 | 100 | 7 | 1 | 324 | 1 | 351 | 5.38e-138 | 395 |
| Msa0527820 | MtrunA17_Chr8g0355191 | 56.538 | 260 | 86 | 3 | 26 | 285 | 43 | 275 | 8.54e-98 | 295 |
| Msa0527820 | MtrunA17_Chr7g0216601 | 67.476 | 206 | 59 | 3 | 22 | 221 | 46 | 249 | 4.24e-95 | 287 |
| Msa0527820 | MtrunA17_Chr8g0355181 | 75.706 | 177 | 43 | 0 | 33 | 209 | 51 | 227 | 1.17e-91 | 278 |
| Msa0527820 | MtrunA17_Chr6g0452911 | 72.571 | 175 | 38 | 1 | 42 | 206 | 65 | 239 | 1.44e-90 | 275 |
| Msa0527820 | MtrunA17_Chr8g0362541 | 71.809 | 188 | 39 | 1 | 37 | 210 | 68 | 255 | 9.76e-87 | 266 |
| Msa0527820 | MtrunA17_Chr4g0072291 | 71.006 | 169 | 46 | 1 | 37 | 202 | 158 | 326 | 2.15e-85 | 266 |
| Msa0527820 | MtrunA17_Chr2g0328971 | 69.880 | 166 | 50 | 0 | 37 | 202 | 166 | 331 | 2.56e-83 | 261 |
| Msa0527820 | MtrunA17_Chr1g0152161 | 70.482 | 166 | 49 | 0 | 37 | 202 | 311 | 476 | 4.23e-82 | 261 |
| Msa0527820 | MtrunA17_Chr4g0032631 | 61.224 | 196 | 70 | 2 | 13 | 202 | 135 | 330 | 8.67e-82 | 258 |
| Msa0527820 | MtrunA17_Chr8g0343851 | 66.480 | 179 | 57 | 1 | 27 | 202 | 234 | 412 | 1.13e-81 | 258 |
| Msa0527820 | MtrunA17_Chr7g0249621 | 67.222 | 180 | 53 | 2 | 29 | 202 | 247 | 426 | 2.68e-81 | 260 |
| Msa0527820 | MtrunA17_Chr3g0135161 | 67.614 | 176 | 55 | 1 | 27 | 202 | 301 | 474 | 1.71e-80 | 257 |
| Msa0527820 | MtrunA17_Chr5g0400871 | 60.804 | 199 | 70 | 2 | 12 | 202 | 218 | 416 | 1.33e-79 | 252 |
| Msa0527820 | MtrunA17_Chr4g0054351 | 67.039 | 179 | 54 | 2 | 27 | 202 | 301 | 477 | 9.73e-79 | 253 |
| Msa0527820 | MtrunA17_Chr5g0412151 | 69.822 | 169 | 48 | 1 | 37 | 202 | 223 | 391 | 2.08e-70 | 227 |
| Msa0527820 | MtrunA17_Chr2g0305821 | 70.064 | 157 | 38 | 1 | 1 | 148 | 1 | 157 | 2.08e-66 | 206 |
| Msa0527820 | MtrunA17_Chr8g0367311 | 67.188 | 128 | 42 | 0 | 75 | 202 | 22 | 149 | 2.45e-56 | 183 |
| Msa0527820 | MtrunA17_Chr2g0305831 | 46.890 | 209 | 69 | 7 | 144 | 319 | 1 | 200 | 9.40e-49 | 162 |
| Msa0527820 | MtrunA17_Chr7g0257361 | 59.060 | 149 | 53 | 2 | 21 | 166 | 40 | 183 | 2.14e-46 | 162 |
| Msa0527820 | MtrunA17_Chr7g0263581 | 48.058 | 206 | 85 | 6 | 42 | 247 | 140 | 323 | 1.34e-42 | 153 |
| Msa0527820 | MtrunA17_Chr4g0053181 | 47.805 | 205 | 87 | 5 | 42 | 245 | 177 | 362 | 1.97e-41 | 150 |
| Msa0527820 | MtrunA17_Chr5g0401891 | 48.947 | 190 | 79 | 5 | 42 | 231 | 153 | 324 | 2.94e-40 | 147 |
| Msa0527820 | MtrunA17_Chr4g0030191 | 45.813 | 203 | 89 | 5 | 42 | 244 | 132 | 313 | 5.09e-39 | 143 |
| Msa0527820 | MtrunA17_Chr2g0325911 | 43.284 | 201 | 78 | 6 | 42 | 242 | 135 | 299 | 2.87e-31 | 122 |
| Msa0527820 | MtrunA17_Chr3g0126151 | 48.387 | 93 | 47 | 1 | 86 | 178 | 47 | 138 | 6.16e-23 | 92.8 |
| Msa0527820 | MtrunA17_Chr1g0170761 | 39.375 | 160 | 87 | 5 | 32 | 190 | 128 | 278 | 1.11e-15 | 77.0 |
| Msa0527820 | MtrunA17_Chr8g0367321 | 63.830 | 47 | 17 | 0 | 28 | 74 | 145 | 191 | 3.90e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527820 | AT1G16060.1 | 59.816 | 326 | 125 | 3 | 3 | 324 | 20 | 343 | 2.61e-113 | 332 |
| Msa0527820 | AT1G79700.2 | 63.934 | 305 | 77 | 8 | 24 | 324 | 35 | 310 | 2.47e-107 | 316 |
| Msa0527820 | AT1G79700.1 | 60.656 | 305 | 77 | 9 | 24 | 324 | 35 | 300 | 7.60e-96 | 286 |
| Msa0527820 | AT3G54320.3 | 72.222 | 198 | 43 | 3 | 24 | 209 | 39 | 236 | 5.66e-87 | 268 |
| Msa0527820 | AT3G54320.1 | 72.222 | 198 | 43 | 3 | 24 | 209 | 39 | 236 | 6.52e-87 | 268 |
| Msa0527820 | AT5G57390.2 | 65.957 | 188 | 50 | 2 | 37 | 210 | 81 | 268 | 6.02e-85 | 263 |
| Msa0527820 | AT5G57390.1 | 65.957 | 188 | 50 | 2 | 37 | 210 | 199 | 386 | 5.19e-84 | 264 |
| Msa0527820 | AT1G72570.1 | 65.385 | 182 | 57 | 2 | 27 | 202 | 206 | 387 | 1.65e-81 | 253 |
| Msa0527820 | AT1G51190.1 | 58.824 | 204 | 81 | 1 | 2 | 202 | 151 | 354 | 2.34e-81 | 257 |
| Msa0527820 | AT5G17430.2 | 69.231 | 169 | 49 | 1 | 37 | 202 | 144 | 312 | 5.74e-80 | 253 |
| Msa0527820 | AT5G17430.1 | 69.231 | 169 | 49 | 1 | 37 | 202 | 206 | 374 | 1.06e-79 | 253 |
| Msa0527820 | AT3G20840.1 | 59.694 | 196 | 73 | 2 | 13 | 202 | 150 | 345 | 2.68e-79 | 252 |
| Msa0527820 | AT4G37750.1 | 67.039 | 179 | 54 | 2 | 27 | 202 | 271 | 447 | 6.52e-78 | 248 |
| Msa0527820 | AT1G16060.3 | 59.109 | 247 | 98 | 2 | 75 | 320 | 25 | 269 | 4.14e-76 | 235 |
| Msa0527820 | AT1G79700.3 | 60.558 | 251 | 69 | 7 | 75 | 324 | 13 | 234 | 1.05e-73 | 227 |
| Msa0527820 | AT1G79700.4 | 60.558 | 251 | 69 | 7 | 75 | 324 | 7 | 228 | 1.24e-73 | 227 |
| Msa0527820 | AT5G65510.4 | 69.231 | 169 | 49 | 1 | 37 | 202 | 169 | 337 | 1.44e-71 | 228 |
| Msa0527820 | AT5G65510.2 | 69.231 | 169 | 49 | 1 | 37 | 202 | 227 | 395 | 3.03e-71 | 229 |
| Msa0527820 | AT5G65510.1 | 69.231 | 169 | 49 | 1 | 37 | 202 | 227 | 395 | 3.03e-71 | 229 |
| Msa0527820 | AT5G10510.2 | 68.675 | 166 | 52 | 0 | 37 | 202 | 226 | 391 | 3.34e-71 | 230 |
| Msa0527820 | AT5G10510.7 | 67.456 | 169 | 52 | 1 | 37 | 202 | 226 | 394 | 3.62e-69 | 225 |
| Msa0527820 | AT5G10510.5 | 67.456 | 169 | 52 | 1 | 37 | 202 | 226 | 394 | 3.62e-69 | 225 |
| Msa0527820 | AT5G10510.1 | 67.456 | 169 | 52 | 1 | 37 | 202 | 249 | 417 | 6.80e-69 | 225 |
| Msa0527820 | AT5G10510.6 | 67.456 | 169 | 52 | 1 | 37 | 202 | 264 | 432 | 7.76e-69 | 225 |
| Msa0527820 | AT5G10510.4 | 67.456 | 169 | 52 | 1 | 37 | 202 | 264 | 432 | 7.76e-69 | 225 |
| Msa0527820 | AT5G10510.3 | 59.788 | 189 | 53 | 1 | 37 | 202 | 264 | 452 | 1.58e-64 | 214 |
| Msa0527820 | AT5G65510.3 | 68.345 | 139 | 41 | 1 | 37 | 172 | 169 | 307 | 1.00e-63 | 204 |
| Msa0527820 | AT3G54320.4 | 79.259 | 135 | 28 | 0 | 75 | 209 | 36 | 170 | 3.40e-63 | 204 |
| Msa0527820 | AT3G54320.5 | 79.259 | 135 | 28 | 0 | 75 | 209 | 36 | 170 | 3.40e-63 | 204 |
| Msa0527820 | AT1G16060.2 | 55.450 | 211 | 91 | 2 | 115 | 324 | 1 | 209 | 2.17e-61 | 195 |
| Msa0527820 | AT1G16060.4 | 55.450 | 211 | 91 | 2 | 115 | 324 | 1 | 209 | 2.17e-61 | 195 |
| Msa0527820 | AT1G16060.6 | 55.450 | 211 | 91 | 2 | 115 | 324 | 1 | 209 | 2.17e-61 | 195 |
| Msa0527820 | AT1G16060.5 | 55.450 | 211 | 91 | 2 | 115 | 324 | 1 | 209 | 2.17e-61 | 195 |
| Msa0527820 | AT2G41710.1 | 50.000 | 188 | 82 | 3 | 21 | 205 | 50 | 228 | 2.57e-46 | 162 |
| Msa0527820 | AT2G41710.4 | 50.000 | 188 | 82 | 3 | 21 | 205 | 50 | 228 | 3.32e-46 | 162 |
| Msa0527820 | AT2G41710.2 | 48.705 | 193 | 82 | 4 | 21 | 205 | 50 | 233 | 7.31e-44 | 155 |
| Msa0527820 | AT3G54320.2 | 83.158 | 95 | 16 | 0 | 115 | 209 | 1 | 95 | 5.41e-43 | 150 |
| Msa0527820 | AT2G28550.3 | 42.083 | 240 | 115 | 5 | 42 | 279 | 154 | 371 | 7.75e-43 | 154 |
| Msa0527820 | AT4G36920.1 | 46.465 | 198 | 89 | 4 | 42 | 239 | 132 | 312 | 4.65e-40 | 145 |
| Msa0527820 | AT4G36920.2 | 46.465 | 198 | 89 | 4 | 42 | 239 | 132 | 312 | 4.65e-40 | 145 |
| Msa0527820 | AT2G41710.3 | 42.152 | 223 | 82 | 4 | 21 | 205 | 50 | 263 | 2.26e-39 | 144 |
| Msa0527820 | AT1G16060.7 | 47.849 | 186 | 94 | 2 | 140 | 324 | 4 | 187 | 2.52e-39 | 137 |
| Msa0527820 | AT5G67180.2 | 47.568 | 185 | 80 | 4 | 27 | 202 | 73 | 249 | 2.02e-38 | 138 |
| Msa0527820 | AT5G67180.3 | 47.568 | 185 | 80 | 4 | 27 | 202 | 73 | 249 | 2.44e-38 | 137 |
| Msa0527820 | AT5G67180.1 | 50.932 | 161 | 71 | 3 | 42 | 202 | 97 | 249 | 5.76e-38 | 138 |
| Msa0527820 | AT2G28550.1 | 39.167 | 240 | 107 | 6 | 42 | 279 | 154 | 356 | 1.46e-33 | 128 |
| Msa0527820 | AT2G28550.4 | 51.095 | 137 | 59 | 3 | 42 | 178 | 154 | 282 | 1.48e-31 | 121 |
| Msa0527820 | AT5G67180.4 | 45.625 | 160 | 70 | 4 | 31 | 181 | 77 | 228 | 3.31e-29 | 112 |
| Msa0527820 | AT2G28550.5 | 38.164 | 207 | 96 | 4 | 75 | 279 | 14 | 190 | 3.41e-26 | 105 |
| Msa0527820 | AT2G28550.2 | 51.220 | 123 | 52 | 3 | 42 | 164 | 154 | 268 | 1.09e-25 | 103 |
| Msa0527820 | AT2G28550.6 | 51.220 | 123 | 52 | 3 | 42 | 164 | 154 | 268 | 1.09e-25 | 103 |
| Msa0527820 | AT5G60120.6 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.37e-21 | 95.5 |
| Msa0527820 | AT5G60120.1 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.41e-21 | 95.5 |
| Msa0527820 | AT5G60120.4 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.58e-21 | 94.7 |
| Msa0527820 | AT5G60120.3 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.58e-21 | 94.7 |
| Msa0527820 | AT5G60120.5 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.58e-21 | 94.7 |
| Msa0527820 | AT5G60120.2 | 40.854 | 164 | 74 | 4 | 32 | 195 | 151 | 291 | 1.87e-21 | 95.1 |
| Msa0527820 | AT2G39250.2 | 44.554 | 101 | 49 | 2 | 42 | 142 | 109 | 202 | 1.94e-20 | 89.0 |
| Msa0527820 | AT2G39250.1 | 44.554 | 101 | 49 | 2 | 42 | 142 | 109 | 202 | 4.74e-20 | 89.4 |
| Msa0527820 | AT3G54990.2 | 46.154 | 104 | 49 | 2 | 42 | 145 | 123 | 219 | 7.22e-16 | 76.3 |
| Msa0527820 | AT3G54990.1 | 46.154 | 104 | 49 | 2 | 42 | 145 | 123 | 219 | 2.42e-15 | 76.3 |
Find 83 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAACATGTCTTCGAATTT+TGG | 0.115041 | 4_1:+512559 | None:intergenic |
| CTTTGTGGAGGTGAGTTTCT+TGG | 0.219994 | 4_1:+518790 | None:intergenic |
| TATTTATACCTTGGAACTTA+TGG | 0.227175 | 4_1:-515512 | Msa0527820:intron |
| CACAAAGAAGCTCAGTTTAT+AGG | 0.267290 | 4_1:-518774 | Msa0527820:CDS |
| TCGTCGTTGTCTTGTGGTTT+AGG | 0.271322 | 4_1:+512691 | None:intergenic |
| GGGCTTGATGCTTGATTAGA+AGG | 0.288151 | 4_1:-512349 | Msa0527820:exon |
| AATGATGATGACAACATATT+TGG | 0.301779 | 4_1:-512409 | Msa0527820:CDS |
| TTGATTAGAAGGAGAAATTA+TGG | 0.304800 | 4_1:-512338 | Msa0527820:exon |
| TGAGTAAAAGCTTCCATTCA+TGG | 0.305096 | 4_1:-518899 | Msa0527820:exon |
| AAAATTGTTTGAATATCTTC+TGG | 0.307325 | 4_1:+512463 | None:intergenic |
| ACAAAGAAGCTCAGTTTATA+GGG | 0.307352 | 4_1:-518773 | Msa0527820:CDS |
| TTAATAACTAAACCTTCTTA+AGG | 0.317560 | 4_1:+517786 | None:intergenic |
| TGAGTTGAAAATAAAGTATA+TGG | 0.366672 | 4_1:+512283 | None:intergenic |
| GCTCTTACGTGTCATCTTGT+TGG | 0.374034 | 4_1:+512103 | None:intergenic |
| GCTCGAATTGGCAGGGTCTT+CGG | 0.404820 | 4_1:-515542 | Msa0527820:CDS |
| ATTTGTGGGATAAGAATTGC+TGG | 0.413847 | 4_1:-518620 | Msa0527820:CDS |
| GAGTAAACAATTTAGAGAAT+GGG | 0.413873 | 4_1:-512201 | Msa0527820:three_prime_UTR |
| GGCAACAAATATTTATACCT+TGG | 0.417814 | 4_1:-515521 | Msa0527820:CDS |
| AGAGTAAACAATTTAGAGAA+TGG | 0.423558 | 4_1:-512202 | Msa0527820:three_prime_UTR |
| ACTTGGCAGCATTGAAGTAC+TGG | 0.425678 | 4_1:-518074 | Msa0527820:CDS |
| CTTCAATGCTGCCAAGTCAT+AGG | 0.425738 | 4_1:+518080 | None:intergenic |
| CTATAAACTGAGCTTCTTTG+TGG | 0.430666 | 4_1:+518775 | None:intergenic |
| TGAGATTTCTTAGCCATGAA+TGG | 0.431590 | 4_1:+518886 | None:intergenic |
| AATATATTGGATCCTTAAGA+AGG | 0.444800 | 4_1:-517798 | Msa0527820:intron |
| GATGGGAAGCTCGAATTGGC+AGG | 0.455003 | 4_1:-515550 | Msa0527820:CDS |
| CAGTCAAAAGAAGAATATAT+TGG | 0.457176 | 4_1:-517811 | Msa0527820:CDS |
| GTCGATATGAAGCTCATTTG+TGG | 0.458701 | 4_1:-518635 | Msa0527820:CDS |
| CGTGGAATGGTTGATTTGAC+AGG | 0.483312 | 4_1:+512496 | None:intergenic |
| AATGAATCACAAAGCAAGAA+AGG | 0.484111 | 4_1:-518597 | Msa0527820:CDS |
| TTTCACCGCGGTGGTGGAAG+AGG | 0.486245 | 4_1:+518831 | None:intergenic |
| ATTATCAAGAGGAGCTCAAA+GGG | 0.490116 | 4_1:-517843 | Msa0527820:CDS |
| TCGATATGAAGCTCATTTGT+GGG | 0.492355 | 4_1:-518634 | Msa0527820:CDS |
| GGAAGATGGGAAGCTCGAAT+TGG | 0.493895 | 4_1:-515554 | Msa0527820:CDS |
| GACACCACCACAATGGAAGA+TGG | 0.496318 | 4_1:-515568 | Msa0527820:CDS |
| CTTGGCAGCATTGAAGTACT+GGG | 0.500070 | 4_1:-518073 | Msa0527820:CDS |
| TGCTAGCAATAATCAAGAGC+TGG | 0.512163 | 4_1:-512647 | Msa0527820:CDS |
| CTGGATCTTAATCAAGAACT+TGG | 0.515101 | 4_1:-512628 | Msa0527820:CDS |
| TGCAGCACGTGCCTATGACT+TGG | 0.516501 | 4_1:-518091 | Msa0527820:CDS |
| TTTACGTTTCACCGCGGTGG+TGG | 0.525503 | 4_1:+518825 | None:intergenic |
| TCACAGTTGTAAGAAATGAT+TGG | 0.525560 | 4_1:+512127 | None:intergenic |
| ATGGCAGCAATAGAGTATAG+AGG | 0.527216 | 4_1:-512766 | Msa0527820:CDS |
| GAAAATTGAGAATTGTGTCT+TGG | 0.528761 | 4_1:+518049 | None:intergenic |
| GTTAGAAAATTCATCGTCAT+CGG | 0.529129 | 4_1:-512542 | Msa0527820:CDS |
| TTACTATCGTCGTTGTCTTG+TGG | 0.533843 | 4_1:+512685 | None:intergenic |
| AGTAAACAATTTAGAGAATG+GGG | 0.534967 | 4_1:-512200 | Msa0527820:three_prime_UTR |
| AATATTGTTATAGACATCGT+TGG | 0.541172 | 4_1:-518662 | Msa0527820:intron |
| ATAAGATCAGTCGAAGATGC+TGG | 0.558029 | 4_1:+512592 | None:intergenic |
| TGGAAATGTCCGACGTGGAA+TGG | 0.559065 | 4_1:+512483 | None:intergenic |
| ATGGTTGATTTGACAGGCGG+TGG | 0.564133 | 4_1:+512502 | None:intergenic |
| GATCTTAATCAAGAACTTGG+TGG | 0.566882 | 4_1:-512625 | Msa0527820:CDS |
| TGTTATAGACATCGTTGGAC+CGG | 0.567027 | 4_1:-518657 | Msa0527820:intron |
| CAAATGAGCTTCATATCGAC+CGG | 0.573235 | 4_1:+518638 | None:intergenic |
| TCAAGAGGAGCTCAAAGGGA+TGG | 0.574531 | 4_1:-517839 | Msa0527820:CDS |
| GAGGAGCTCAAAGGGATGGA+AGG | 0.577439 | 4_1:-517835 | Msa0527820:CDS |
| CTTCCCATCTTCCATTGTGG+TGG | 0.578979 | 4_1:+515564 | None:intergenic |
| ACACCACCACAATGGAAGAT+GGG | 0.584570 | 4_1:-515567 | Msa0527820:CDS |
| AATTATCAAGAGGAGCTCAA+AGG | 0.585976 | 4_1:-517844 | Msa0527820:CDS |
| TGCTGCCATGTCATAAGCTG+TGG | 0.586967 | 4_1:+512780 | None:intergenic |
| TTAGGTATCAAATTATCAAG+AGG | 0.587787 | 4_1:-517854 | Msa0527820:intron |
| GAGCTTCCCATCTTCCATTG+TGG | 0.592861 | 4_1:+515561 | None:intergenic |
| CAGTTTATAGGGGTGTCACA+AGG | 0.604860 | 4_1:-518762 | Msa0527820:intron |
| ACGTTTACGTTTCACCGCGG+TGG | 0.605690 | 4_1:+518822 | None:intergenic |
| TGGAAGTACCATAAGTTCCA+AGG | 0.606508 | 4_1:+515504 | None:intergenic |
| TGGCAGCAATAGAGTATAGA+GGG | 0.606682 | 4_1:-512765 | Msa0527820:CDS |
| CAAAGCAAGAAAGGAAGACA+AGG | 0.607141 | 4_1:-518588 | Msa0527820:intron |
| CTTAATCAAGAACTTGGTGG+TGG | 0.608278 | 4_1:-512622 | Msa0527820:CDS |
| TAAACTGAGCTTCTTTGTGG+AGG | 0.608474 | 4_1:+518778 | None:intergenic |
| ATCAGTCGAAGATGCTGGTG+TGG | 0.611842 | 4_1:+512597 | None:intergenic |
| ACTAAGATCAAAGTTTGTAA+CGG | 0.614633 | 4_1:+512735 | None:intergenic |
| CAAAATACAGAGGTGTAGCA+AGG | 0.618939 | 4_1:-517514 | Msa0527820:intron |
| CAAAGAAGCTCAGTTTATAG+GGG | 0.637455 | 4_1:-518772 | Msa0527820:CDS |
| TTCTTCCTCTTCCACCACCG+CGG | 0.640893 | 4_1:-518836 | Msa0527820:CDS |
| ATGGGAAGCTCGAATTGGCA+GGG | 0.643491 | 4_1:-515549 | Msa0527820:CDS |
| ATAATAGATGACAATGACAA+GGG | 0.649283 | 4_1:-512253 | Msa0527820:three_prime_UTR |
| AGCAGCCACAGCTTATGACA+TGG | 0.655956 | 4_1:-512785 | Msa0527820:CDS |
| ATGTTTAGACACCACCACAA+TGG | 0.660446 | 4_1:-515575 | Msa0527820:intron |
| AATAATAGATGACAATGACA+AGG | 0.664612 | 4_1:-512254 | Msa0527820:three_prime_UTR |
| GGAATGGTTGATTTGACAGG+CGG | 0.690559 | 4_1:+512499 | None:intergenic |
| TCTTCTGGAAATGTCCGACG+TGG | 0.691543 | 4_1:+512478 | None:intergenic |
| AGAGGAGTCTCAAAATACAG+AGG | 0.710309 | 4_1:-517524 | Msa0527820:CDS |
| TTGGCAGCATTGAAGTACTG+GGG | 0.726529 | 4_1:-518072 | Msa0527820:CDS |
| TCAAATCAACCATTCCACGT+CGG | 0.751359 | 4_1:-512492 | Msa0527820:CDS |
| TTTACGTTTACGTTTCACCG+CGG | 0.779773 | 4_1:+518819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAATATTAAAATACTAT+AGG | - | chr4_1:514629-514648 | Msa0527820:intron | 10.0% |
| !! | AACTAAATAGTAAAAAATAA+AGG | - | chr4_1:514908-514927 | Msa0527820:intron | 10.0% |
| !! | ACTAAATAGTAAAAAATAAA+GGG | - | chr4_1:514909-514928 | Msa0527820:intron | 10.0% |
| !!! | TTTTTTTATGACAAAAAAAT+GGG | - | chr4_1:515286-515305 | Msa0527820:intron | 10.0% |
| !! | AATTACAAAACAAAAATATA+TGG | + | chr4_1:515356-515375 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTGTAATTAAAT+TGG | - | chr4_1:515360-515379 | Msa0527820:intron | 10.0% |
| !! | TTAATTAGATGAATTTAATA+CGG | + | chr4_1:515679-515698 | None:intergenic | 10.0% |
| !!! | AATATTTTATTAGAGTTTTT+TGG | + | chr4_1:515992-516011 | None:intergenic | 10.0% |
| !! | AACTAAAAGTAATATATATT+TGG | - | chr4_1:516115-516134 | Msa0527820:intron | 10.0% |
| !! | AATTAATTTACTTACTAATT+AGG | - | chr4_1:517298-517317 | Msa0527820:intron | 10.0% |
| !! | AAAAAAATGAATTTGTAATT+TGG | - | chr4_1:518830-518849 | Msa0527820:CDS | 10.0% |
| !! | AAAAAATGAATTTGTAATTT+GGG | - | chr4_1:518831-518850 | Msa0527820:CDS | 10.0% |
| !!! | TGTTTTAAAAATTGTTGATT+TGG | - | chr4_1:512635-512654 | Msa0527820:CDS | 15.0% |
| !! | AAAAAAATGAAGATATATGA+AGG | + | chr4_1:512985-513004 | None:intergenic | 15.0% |
| !!! | TTCATATATCTTCATTTTTT+TGG | - | chr4_1:512984-513003 | Msa0527820:intron | 15.0% |
| !! | ATGCATATAAATTTCATATA+TGG | + | chr4_1:513055-513074 | None:intergenic | 15.0% |
| !! | AATCCTTATATTAAATCTAA+TGG | - | chr4_1:513284-513303 | Msa0527820:intron | 15.0% |
| !!! | ATATTGTTTGATTCATTTTA+AGG | + | chr4_1:513576-513595 | None:intergenic | 15.0% |
| !! | AAATGAATCAAACAATATAT+TGG | - | chr4_1:513578-513597 | Msa0527820:intron | 15.0% |
| !!! | TATTTTTGTTTTAAAATGTG+AGG | - | chr4_1:513603-513622 | Msa0527820:intron | 15.0% |
| !! | TAAAAATATCAATTTCTGTT+TGG | + | chr4_1:513919-513938 | None:intergenic | 15.0% |
| !! | AAATTACAAAGATATCAATA+TGG | - | chr4_1:513993-514012 | Msa0527820:intron | 15.0% |
| !! | AATTACAAAGATATCAATAT+GGG | - | chr4_1:513994-514013 | Msa0527820:intron | 15.0% |
| !!! | ACATTTATATTCTTTTTTGA+AGG | - | chr4_1:514468-514487 | Msa0527820:intron | 15.0% |
| !!! | ATTTCTAAAAACATAAATAC+AGG | + | chr4_1:514531-514550 | None:intergenic | 15.0% |
| !!! | AATTCAAGTTCAATAAATAT+TGG | - | chr4_1:514583-514602 | Msa0527820:intron | 15.0% |
| !!! | ATAAATATTGGAATTTTAGT+TGG | - | chr4_1:514595-514614 | Msa0527820:intron | 15.0% |
| !!! | CATTTTTTTGTCATAAAAAA+AGG | + | chr4_1:515287-515306 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATGACAAAAAAA+TGG | - | chr4_1:515285-515304 | Msa0527820:intron | 15.0% |
| !! | TAATTAGATGAATTTAATAC+GGG | + | chr4_1:515678-515697 | None:intergenic | 15.0% |
| !!! | CCTTAATTTTTTACTATATT+GGG | - | chr4_1:516604-516623 | Msa0527820:intron | 15.0% |
| !!! | TCTATCTGTTTTTATTTTAT+GGG | + | chr4_1:516799-516818 | None:intergenic | 15.0% |
| !!! | ATCTATCTGTTTTTATTTTA+TGG | + | chr4_1:516800-516819 | None:intergenic | 15.0% |
| !! | TAAAAACTTATGCTATAATT+GGG | + | chr4_1:516844-516863 | None:intergenic | 15.0% |
| !! | ATAAAAACTTATGCTATAAT+TGG | + | chr4_1:516845-516864 | None:intergenic | 15.0% |
| !! | ATATATAAAAAAGAAATGGA+CGG | - | chr4_1:517358-517377 | Msa0527820:intron | 15.0% |
| !! | GTTATAGTTTGAAAATAAAA+TGG | + | chr4_1:517613-517632 | None:intergenic | 15.0% |
| !! | AAGTATGTATTAATTTATCT+CGG | - | chr4_1:518001-518020 | Msa0527820:intron | 15.0% |
| !!! | CTTGATTTTAGAATTTTTTA+GGG | - | chr4_1:518911-518930 | Msa0527820:five_prime_UTR | 15.0% |
| !!! | TTGATTTTAGAATTTTTTAG+GGG | - | chr4_1:518912-518931 | Msa0527820:five_prime_UTR | 15.0% |
| !!! | TTTTGTTATGTTGTTTTTGT+TGG | - | chr4_1:512530-512549 | Msa0527820:CDS | 20.0% |
| !!! | TTTGATCAATAATTTTCGTT+AGG | + | chr4_1:512740-512759 | None:intergenic | 20.0% |
| !!! | TCAATTCTTAAAATGGATTT+TGG | + | chr4_1:512795-512814 | None:intergenic | 20.0% |
| !! | AGCAATATATCATCATTATT+TGG | - | chr4_1:513007-513026 | Msa0527820:intron | 20.0% |
| !! | TATCATCATTATTTGGTAAA+AGG | - | chr4_1:513014-513033 | Msa0527820:intron | 20.0% |
| !!! | TATATGTGTGTGTTTTATTT+TGG | - | chr4_1:513113-513132 | Msa0527820:intron | 20.0% |
| !! | TTAATAACTAAACCTTCTTA+AGG | + | chr4_1:513209-513228 | None:intergenic | 20.0% |
| !! | CAACCATTAGATTTAATATA+AGG | + | chr4_1:513290-513309 | None:intergenic | 20.0% |
| !! | CTTATATTAAATCTAATGGT+TGG | - | chr4_1:513288-513307 | Msa0527820:intron | 20.0% |
| !!! | AAAGTTTTGAATTAATCTAG+TGG | + | chr4_1:513334-513353 | None:intergenic | 20.0% |
| !! | AGATTAATTCAAAACTTTGA+TGG | - | chr4_1:513336-513355 | Msa0527820:intron | 20.0% |
| !!! | ATACTGAATGACTTTTATTA+TGG | - | chr4_1:513374-513393 | Msa0527820:intron | 20.0% |
| !! | TTAAACAATCTATTTGTGAA+AGG | + | chr4_1:513795-513814 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTAGAAAAGAAAG+AGG | - | chr4_1:513948-513967 | Msa0527820:intron | 20.0% |
| !!! | ATACTAAAAGTGTAAATTAG+AGG | + | chr4_1:514327-514346 | None:intergenic | 20.0% |
| !! | TACATCACACTAATTTATTA+AGG | + | chr4_1:514847-514866 | None:intergenic | 20.0% |
| !!! | TTTTATAAACCACTTTTTGT+AGG | + | chr4_1:514878-514897 | None:intergenic | 20.0% |
| !! | CTTCAACATGAAATTTATTT+AGG | + | chr4_1:515230-515249 | None:intergenic | 20.0% |
| !! | ACAAAACAAAAATATATGGA+GGG | + | chr4_1:515352-515371 | None:intergenic | 20.0% |
| !! | TACAAAACAAAAATATATGG+AGG | + | chr4_1:515353-515372 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAATTAAATTGG+TGG | - | chr4_1:515363-515382 | Msa0527820:intron | 20.0% |
| !!! | GTTTTTATAGGTACTTATAT+AGG | - | chr4_1:515555-515574 | Msa0527820:CDS | 20.0% |
| !! | TAGAACAAAAAAAGATACTA+TGG | - | chr4_1:515720-515739 | Msa0527820:intron | 20.0% |
| !! | AGTATAATTAATTATGCCAT+TGG | + | chr4_1:516237-516256 | None:intergenic | 20.0% |
| !!! | TACATATATCACTACTTTTT+TGG | + | chr4_1:516298-516317 | None:intergenic | 20.0% |
| !!! | TTCATTTTCTCTTTTCTTAT+TGG | - | chr4_1:516348-516367 | Msa0527820:intron | 20.0% |
| !!! | GCCTTAATTTTTTACTATAT+TGG | - | chr4_1:516603-516622 | Msa0527820:intron | 20.0% |
| !! | CCCAATATAGTAAAAAATTA+AGG | + | chr4_1:516607-516626 | None:intergenic | 20.0% |
| !!! | AATGCAAAATTGCTTTTTTT+GGG | + | chr4_1:516668-516687 | None:intergenic | 20.0% |
| !!! | AAAAAAAGCAATTTTGCATT+GGG | - | chr4_1:516668-516687 | Msa0527820:intron | 20.0% |
| !!! | TACTATTTTGTTATCTTTGT+AGG | + | chr4_1:517021-517040 | None:intergenic | 20.0% |
| !! | AAAGATAACAAAATAGTAGT+AGG | - | chr4_1:517023-517042 | Msa0527820:intron | 20.0% |
| !! | AATTAATTAATCTCAACATG+CGG | + | chr4_1:517286-517305 | None:intergenic | 20.0% |
| !! | CATTCTCTTGTATATAAAAT+TGG | + | chr4_1:517393-517412 | None:intergenic | 20.0% |
| !! | TTATAAATTGTAATAGTGAC+GGG | + | chr4_1:517647-517666 | None:intergenic | 20.0% |
| !! | CTTATAAATTGTAATAGTGA+CGG | + | chr4_1:517648-517667 | None:intergenic | 20.0% |
| !! | CATTCAATTAATGATGTATA+AGG | + | chr4_1:517727-517746 | None:intergenic | 20.0% |
| !! | ATAGTACAATTCATATTTGT+TGG | - | chr4_1:517794-517813 | Msa0527820:intron | 20.0% |
| !!! | CTTTTTTTTTTGACAAACTT+AGG | - | chr4_1:517852-517871 | Msa0527820:CDS | 20.0% |
| !!! | TAATCAATCAGTTATTTCTA+TGG | + | chr4_1:518088-518107 | None:intergenic | 20.0% |
| !! | AAAATTGTTTGAATATCTTC+TGG | + | chr4_1:518532-518551 | None:intergenic | 20.0% |
| !!! | TGAGTTGAAAATAAAGTATA+TGG | + | chr4_1:518712-518731 | None:intergenic | 20.0% |
| !!! | GCTTGATTTTAGAATTTTTT+AGG | - | chr4_1:518910-518929 | Msa0527820:five_prime_UTR | 20.0% |
| ! | AATATTGTTATAGACATCGT+TGG | - | chr4_1:512330-512349 | Msa0527820:three_prime_UTR | 25.0% |
| !!! | TCCATTTTAAGAATTGAAAG+TGG | - | chr4_1:512798-512817 | Msa0527820:CDS | 25.0% |
| ! | TCCACTTTCAATTCTTAAAA+TGG | + | chr4_1:512802-512821 | None:intergenic | 25.0% |
| ! | ATATTTAATGACTGCAAAGT+TGG | - | chr4_1:512842-512861 | Msa0527820:intron | 25.0% |
| ! | TATTTAATGACTGCAAAGTT+GGG | - | chr4_1:512843-512862 | Msa0527820:intron | 25.0% |
| !!! | GTGTGTTTTATTTTGGTTTT+AGG | - | chr4_1:513120-513139 | Msa0527820:intron | 25.0% |
| ! | TTAGGTATCAAATTATCAAG+AGG | - | chr4_1:513138-513157 | Msa0527820:intron | 25.0% |
| !! | CAATATATTCTTCTTTTGAC+TGG | + | chr4_1:513183-513202 | None:intergenic | 25.0% |
| ! | CAGTCAAAAGAAGAATATAT+TGG | - | chr4_1:513181-513200 | Msa0527820:intron | 25.0% |
| ! | AATATATTGGATCCTTAAGA+AGG | - | chr4_1:513194-513213 | Msa0527820:intron | 25.0% |
| ! | GTGGAGAATCATATATTATA+AGG | + | chr4_1:513235-513254 | None:intergenic | 25.0% |
| ! | TAGAAAAATTGTAGAGTTTG+TGG | + | chr4_1:513254-513273 | None:intergenic | 25.0% |
| !! | TCATTTTGCAATGAAAATAG+TGG | + | chr4_1:513506-513525 | None:intergenic | 25.0% |
| ! | ACGATATACTCTCTTTAATT+TGG | - | chr4_1:513715-513734 | Msa0527820:intron | 25.0% |
| ! | GTGAAAGGTAATATCAAAAA+GGG | + | chr4_1:513780-513799 | None:intergenic | 25.0% |
| ! | TGTGAAAGGTAATATCAAAA+AGG | + | chr4_1:513781-513800 | None:intergenic | 25.0% |
| ! | AATTTCTGTTTGGAAATTGA+GGG | + | chr4_1:513909-513928 | None:intergenic | 25.0% |
| ! | CTAGTAAAAAATAAGCTAGT+TGG | - | chr4_1:514039-514058 | Msa0527820:intron | 25.0% |
| !! | ATATGAGAGTGATTTTTCTT+TGG | + | chr4_1:514084-514103 | None:intergenic | 25.0% |
| !! | ATAATAATTGACTTCACGAT+AGG | - | chr4_1:514129-514148 | Msa0527820:intron | 25.0% |
| ! | TAGTAATATGTTTATGGTTG+TGG | + | chr4_1:514209-514228 | None:intergenic | 25.0% |
| ! | AAATTTGTAGTGTTTATGTG+TGG | + | chr4_1:514263-514282 | None:intergenic | 25.0% |
| ! | TGAATTTGATCCATAAAACT+CGG | + | chr4_1:514569-514588 | None:intergenic | 25.0% |
| ! | AATGTAAATGTCAATAGGAA+TGG | + | chr4_1:515328-515347 | None:intergenic | 25.0% |
| ! | TATTTATACCTTGGAACTTA+TGG | - | chr4_1:515480-515499 | Msa0527820:intron | 25.0% |
| ! | TGAAAATCATATATAGTGAG+TGG | + | chr4_1:515511-515530 | None:intergenic | 25.0% |
| ! | TATTAACACACCTTATTCTT+AGG | - | chr4_1:515607-515626 | Msa0527820:intron | 25.0% |
| !!! | ATGTCATTTTCATATGCATT+TGG | - | chr4_1:515828-515847 | Msa0527820:intron | 25.0% |
| !! | TTTTTCTTTCTCTATTGCTT+TGG | + | chr4_1:516375-516394 | None:intergenic | 25.0% |
| ! | AAAGCAATAGAGAAAGAAAA+AGG | - | chr4_1:516374-516393 | Msa0527820:intron | 25.0% |
| !!! | GGATTAGAATTGATTTTGAA+AGG | + | chr4_1:516475-516494 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTTCTCTTTTAGA+TGG | + | chr4_1:516496-516515 | None:intergenic | 25.0% |
| !!! | CAATGCAAAATTGCTTTTTT+TGG | + | chr4_1:516669-516688 | None:intergenic | 25.0% |
| !! | CAAAAAAAGCAATTTTGCAT+TGG | - | chr4_1:516667-516686 | Msa0527820:intron | 25.0% |
| ! | AATATGCAATCAAATCTAGT+TGG | - | chr4_1:517062-517081 | Msa0527820:intron | 25.0% |
| ! | TTTATTAAGCAGTTGAAGTT+TGG | + | chr4_1:517103-517122 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAAGCTTTGAGTA+AGG | - | chr4_1:517258-517277 | Msa0527820:intron | 25.0% |
| !! | TATTGTCACTTAATATTGCA+AGG | - | chr4_1:517527-517546 | Msa0527820:CDS | 25.0% |
| !! | ACTCTCTTGTTATATAATTG+AGG | - | chr4_1:517947-517966 | Msa0527820:intron | 25.0% |
| !! | CTCTCTTGTTATATAATTGA+GGG | - | chr4_1:517948-517967 | Msa0527820:intron | 25.0% |
| !!! | TTTTTTGTGTGTAGTAAATC+CGG | + | chr4_1:517976-517995 | None:intergenic | 25.0% |
| ! | ATCCATTTATGTTTGTGTTA+TGG | - | chr4_1:518166-518185 | Msa0527820:intron | 25.0% |
| ! | ACTAAGATCAAAGTTTGTAA+CGG | + | chr4_1:518260-518279 | None:intergenic | 25.0% |
| !! | AATGATGATGACAACATATT+TGG | - | chr4_1:518583-518602 | Msa0527820:intron | 25.0% |
| ! | TTGATTAGAAGGAGAAATTA+TGG | - | chr4_1:518654-518673 | Msa0527820:intron | 25.0% |
| ! | AATAATAGATGACAATGACA+AGG | - | chr4_1:518738-518757 | Msa0527820:intron | 25.0% |
| ! | ATAATAGATGACAATGACAA+GGG | - | chr4_1:518739-518758 | Msa0527820:intron | 25.0% |
| ! | AGAGTAAACAATTTAGAGAA+TGG | - | chr4_1:518790-518809 | Msa0527820:CDS | 25.0% |
| ! | GAGTAAACAATTTAGAGAAT+GGG | - | chr4_1:518791-518810 | Msa0527820:CDS | 25.0% |
| ! | AGTAAACAATTTAGAGAATG+GGG | - | chr4_1:518792-518811 | Msa0527820:CDS | 25.0% |
| ACAAAGAAGCTCAGTTTATA+GGG | - | chr4_1:512219-512238 | Msa0527820:three_prime_UTR | 30.0% | |
| !!! | GTTTTTGTGTCCTCTAAAAT+TGG | - | chr4_1:512297-512316 | Msa0527820:three_prime_UTR | 30.0% |
| ! | ATGAATGCTACCAATTTTAG+AGG | + | chr4_1:512310-512329 | None:intergenic | 30.0% |
| AATGAATCACAAAGCAAGAA+AGG | - | chr4_1:512395-512414 | Msa0527820:CDS | 30.0% | |
| !!! | TATGTTGTTTTTGTTGGTGA+TGG | - | chr4_1:512536-512555 | Msa0527820:CDS | 30.0% |
| GACACAAATTAATCATACCT+AGG | + | chr4_1:512591-512610 | None:intergenic | 30.0% | |
| !! | TGTCAAATGAGTTTTAGTGA+AGG | - | chr4_1:512687-512706 | Msa0527820:CDS | 30.0% |
| !!! | AAAGTTGGGTTTGTTTTGTT+AGG | - | chr4_1:512857-512876 | Msa0527820:intron | 30.0% |
| !!! | AAGTTGGGTTTGTTTTGTTA+GGG | - | chr4_1:512858-512877 | Msa0527820:intron | 30.0% |
| GAAAATTGAGAATTGTGTCT+TGG | + | chr4_1:512946-512965 | None:intergenic | 30.0% | |
| AATTCAAAACTTTGATGGAG+AGG | - | chr4_1:513341-513360 | Msa0527820:intron | 30.0% | |
| CAATTTCTGTTTGGAAATTG+AGG | + | chr4_1:513910-513929 | None:intergenic | 30.0% | |
| ! | TGTAATTTCCTTCCTTTTCT+AGG | + | chr4_1:513981-514000 | None:intergenic | 30.0% |
| !!! | GCTTATTTTTTACTAGTGAC+CGG | + | chr4_1:514035-514054 | None:intergenic | 30.0% |
| ! | GATTCGTAAATTGTTGACTA+TGG | + | chr4_1:514179-514198 | None:intergenic | 30.0% |
| GGTGGTTAGTAATATGTTTA+TGG | + | chr4_1:514215-514234 | None:intergenic | 30.0% | |
| GTTGTGGGTAATTTATAATC+AGG | + | chr4_1:514236-514255 | None:intergenic | 30.0% | |
| GAATTTGATCCATAAAACTC+GGG | + | chr4_1:514568-514587 | None:intergenic | 30.0% | |
| TAGTCAAAATGTGCTTAAGT+AGG | - | chr4_1:514661-514680 | Msa0527820:intron | 30.0% | |
| AGTCTCATAGTAGATTTGAA+TGG | - | chr4_1:514804-514823 | Msa0527820:intron | 30.0% | |
| ATCAAAGATCCTACAAAAAG+TGG | - | chr4_1:514866-514885 | Msa0527820:intron | 30.0% | |
| ! | TCATGTTGAAGCATTTCAAA+TGG | - | chr4_1:515239-515258 | Msa0527820:intron | 30.0% |
| AAATGGTAGTTGTGACAAAT+GGG | - | chr4_1:515256-515275 | Msa0527820:intron | 30.0% | |
| AAAATGGGTAACTACCTTTA+TGG | - | chr4_1:515301-515320 | Msa0527820:intron | 30.0% | |
| AGGGTAATGTAAATGTCAAT+AGG | + | chr4_1:515333-515352 | None:intergenic | 30.0% | |
| GGCAACAAATATTTATACCT+TGG | - | chr4_1:515471-515490 | Msa0527820:intron | 30.0% | |
| GTGTGTTAATAGTAGTATGT+AGG | + | chr4_1:515598-515617 | None:intergenic | 30.0% | |
| TGACATGAAACCTAAGAATA+AGG | + | chr4_1:515620-515639 | None:intergenic | 30.0% | |
| !! | TTGGATTTGGAAGCATTTAT+AGG | - | chr4_1:515901-515920 | Msa0527820:intron | 30.0% |
| CACACAAGTTACTATACTAA+AGG | - | chr4_1:516015-516034 | Msa0527820:intron | 30.0% | |
| TTGGAAGTGGATAATTGATT+TGG | + | chr4_1:516279-516298 | None:intergenic | 30.0% | |
| !!! | TATCACTACTTTTTTGGAAG+TGG | + | chr4_1:516292-516311 | None:intergenic | 30.0% |
| GAGAGAAAGTTGTAATAAAG+TGG | - | chr4_1:516430-516449 | Msa0527820:intron | 30.0% | |
| GTTGTAATAAAGTGGTTGTA+CGG | - | chr4_1:516438-516457 | Msa0527820:intron | 30.0% | |
| !! | GTTGTTCTCTAAAGTTTGTT+GGG | + | chr4_1:516581-516600 | None:intergenic | 30.0% |
| !! | AGTTGTTCTCTAAAGTTTGT+TGG | + | chr4_1:516582-516601 | None:intergenic | 30.0% |
| AATAGATTCCCGAAATTTCA+GGG | + | chr4_1:516938-516957 | None:intergenic | 30.0% | |
| AAATAGATTCCCGAAATTTC+AGG | + | chr4_1:516939-516958 | None:intergenic | 30.0% | |
| AATTTCGGGAATCTATTTGA+CGG | - | chr4_1:516941-516960 | Msa0527820:intron | 30.0% | |
| ACCTACTACTTCATTTCAAA+TGG | - | chr4_1:516994-517013 | Msa0527820:intron | 30.0% | |
| ! | ACCATTTGAAATGAAGTAGT+AGG | + | chr4_1:516998-517017 | None:intergenic | 30.0% |
| ATAGTAGTAGGATAATCCAA+AGG | - | chr4_1:517035-517054 | Msa0527820:intron | 30.0% | |
| !!! | TGATTGCATATTTTGACCTT+TGG | + | chr4_1:517054-517073 | None:intergenic | 30.0% |
| TAGTTTGAATGAAAGACCTA+GGG | + | chr4_1:517164-517183 | None:intergenic | 30.0% | |
| ! | TTAGTTTGAATGAAAGACCT+AGG | + | chr4_1:517165-517184 | None:intergenic | 30.0% |
| CATTCATTAAATGACGTATG+TGG | - | chr4_1:517688-517707 | Msa0527820:intron | 30.0% | |
| AAAGTCTAAGTAGACATGAA+AGG | + | chr4_1:517836-517855 | None:intergenic | 30.0% | |
| TGTTATATAATTGAGGGATC+CGG | - | chr4_1:517954-517973 | Msa0527820:intron | 30.0% | |
| CTCCATAACACAAACATAAA+TGG | + | chr4_1:518171-518190 | None:intergenic | 30.0% | |
| !!! | TATTGCTAGCATTTTGACTA+CGG | + | chr4_1:518336-518355 | None:intergenic | 30.0% |
| ! | TCTAACATGTCTTCGAATTT+TGG | + | chr4_1:518436-518455 | None:intergenic | 30.0% |
| GTTAGAAAATTCATCGTCAT+CGG | - | chr4_1:518450-518469 | Msa0527820:intron | 30.0% | |
| ! | CTGCACCAATTTTTCATTAT+GGG | - | chr4_1:518623-518642 | Msa0527820:CDS | 30.0% |
| TCAAGCCCATAATGAAAAAT+TGG | + | chr4_1:518631-518650 | None:intergenic | 30.0% | |
| TCACAGTTGTAAGAAATGAT+TGG | + | chr4_1:518868-518887 | None:intergenic | 30.0% | |
| TGAGTAAAAGCTTCCATTCA+TGG | - | chr4_1:512093-512112 | Msa0527820:three_prime_UTR | 35.0% | |
| TGAGATTTCTTAGCCATGAA+TGG | + | chr4_1:512109-512128 | None:intergenic | 35.0% | |
| CTATAAACTGAGCTTCTTTG+TGG | + | chr4_1:512220-512239 | None:intergenic | 35.0% | |
| CACAAAGAAGCTCAGTTTAT+AGG | - | chr4_1:512218-512237 | Msa0527820:three_prime_UTR | 35.0% | |
| CAAAGAAGCTCAGTTTATAG+GGG | - | chr4_1:512220-512239 | Msa0527820:three_prime_UTR | 35.0% | |
| TCGATATGAAGCTCATTTGT+GGG | - | chr4_1:512358-512377 | Msa0527820:CDS | 35.0% | |
| ATTTGTGGGATAAGAATTGC+TGG | - | chr4_1:512372-512391 | Msa0527820:CDS | 35.0% | |
| ATTGGATATGCAGTATACCT+AGG | - | chr4_1:512571-512590 | Msa0527820:CDS | 35.0% | |
| ! | TTTGGCATTGAGAAACCAAA+TGG | - | chr4_1:512653-512672 | Msa0527820:CDS | 35.0% |
| !! | GTTTTAGTGAAGGTCGAATT+AGG | - | chr4_1:512697-512716 | Msa0527820:CDS | 35.0% |
| ! | TTTTCGTTAGGACTCGAATT+TGG | + | chr4_1:512728-512747 | None:intergenic | 35.0% |
| !!! | AGTTGGGTTTGTTTTGTTAG+GGG | - | chr4_1:512859-512878 | Msa0527820:intron | 35.0% |
| AATTATCAAGAGGAGCTCAA+AGG | - | chr4_1:513148-513167 | Msa0527820:intron | 35.0% | |
| ATTATCAAGAGGAGCTCAAA+GGG | - | chr4_1:513149-513168 | Msa0527820:intron | 35.0% | |
| TCGATTTACAGAAAAAGCAG+TGG | - | chr4_1:513438-513457 | Msa0527820:intron | 35.0% | |
| !! | AAAAGCAGTGGATTTTCTAG+AGG | - | chr4_1:513450-513469 | Msa0527820:intron | 35.0% |
| !!! | TTTTTTACTAGTGACCGGAT+GGG | + | chr4_1:514030-514049 | None:intergenic | 35.0% |
| !!! | ATTTTTTACTAGTGACCGGA+TGG | + | chr4_1:514031-514050 | None:intergenic | 35.0% |
| !!! | GATTTTTCTTTGGTTCTCTG+TGG | + | chr4_1:514074-514093 | None:intergenic | 35.0% |
| ! | ATTGTTGACTATGGATTGAG+AGG | + | chr4_1:514170-514189 | None:intergenic | 35.0% |
| GTGGGTAATTTATAATCAGG+TGG | + | chr4_1:514233-514252 | None:intergenic | 35.0% | |
| GTGTAAATTAGAGGATGTGA+TGG | + | chr4_1:514318-514337 | None:intergenic | 35.0% | |
| CAAATGGTAGTTGTGACAAA+TGG | - | chr4_1:515255-515274 | Msa0527820:intron | 35.0% | |
| TCAATAGGAATGGACCATAA+AGG | + | chr4_1:515318-515337 | None:intergenic | 35.0% | |
| TAATACGGGTCTTAATCACA+TGG | + | chr4_1:515664-515683 | None:intergenic | 35.0% | |
| GCGAGCAAACACATTTAATT+TGG | - | chr4_1:515772-515791 | Msa0527820:intron | 35.0% | |
| TGGCTTCACATATTTGGATT+TGG | - | chr4_1:515888-515907 | Msa0527820:intron | 35.0% | |
| ! | ACCAAACTAGTCTAGTTCAA+TGG | - | chr4_1:516887-516906 | Msa0527820:intron | 35.0% |
| ! | TCCATTGAACTAGACTAGTT+TGG | + | chr4_1:516891-516910 | None:intergenic | 35.0% |
| TGTATCTACCCCTGAAATTT+CGG | - | chr4_1:516926-516945 | Msa0527820:intron | 35.0% | |
| ATAGATTCCCGAAATTTCAG+GGG | + | chr4_1:516937-516956 | None:intergenic | 35.0% | |
| TGATATCATTCTTTCACCCT+AGG | - | chr4_1:517145-517164 | Msa0527820:intron | 35.0% | |
| ATTAATACGTCGTCATAGGT+GGG | + | chr4_1:517196-517215 | None:intergenic | 35.0% | |
| AATTAATACGTCGTCATAGG+TGG | + | chr4_1:517197-517216 | None:intergenic | 35.0% | |
| GTCAATTAATACGTCGTCAT+AGG | + | chr4_1:517200-517219 | None:intergenic | 35.0% | |
| CTTATGCAAGCTTATGAGTA+AGG | - | chr4_1:517229-517248 | Msa0527820:intron | 35.0% | |
| GCAAGGTTAAATTCCTTTCA+CGG | - | chr4_1:517544-517563 | Msa0527820:CDS | 35.0% | |
| CAAGGTTAAATTCCTTTCAC+GGG | - | chr4_1:517545-517564 | Msa0527820:CDS | 35.0% | |
| AAGGTTAAATTCCTTTCACG+GGG | - | chr4_1:517546-517565 | Msa0527820:CDS | 35.0% | |
| ! | AAATTGTAATAGTGACGGGA+GGG | + | chr4_1:517643-517662 | None:intergenic | 35.0% |
| ! | TAAATTGTAATAGTGACGGG+AGG | + | chr4_1:517644-517663 | None:intergenic | 35.0% |
| CTGGATCTTAATCAAGAACT+TGG | - | chr4_1:518364-518383 | Msa0527820:intron | 35.0% | |
| GATCTTAATCAAGAACTTGG+TGG | - | chr4_1:518367-518386 | Msa0527820:intron | 35.0% | |
| ! | GCTGCACCAATTTTTCATTA+TGG | - | chr4_1:518622-518641 | Msa0527820:CDS | 35.0% |
| TTTACGTTTACGTTTCACCG+CGG | + | chr4_1:512176-512195 | None:intergenic | 40.0% | |
| TAAACTGAGCTTCTTTGTGG+AGG | + | chr4_1:512217-512236 | None:intergenic | 40.0% | |
| TGTTATAGACATCGTTGGAC+CGG | - | chr4_1:512335-512354 | Msa0527820:three_prime_UTR | 40.0% | |
| CAAATGAGCTTCATATCGAC+CGG | + | chr4_1:512357-512376 | None:intergenic | 40.0% | |
| GTCGATATGAAGCTCATTTG+TGG | - | chr4_1:512357-512376 | Msa0527820:CDS | 40.0% | |
| CAAAGCAAGAAAGGAAGACA+AGG | - | chr4_1:512404-512423 | Msa0527820:CDS | 40.0% | |
| !!! | GTTTTTGTTGGTGATGGCAA+TGG | - | chr4_1:512542-512561 | Msa0527820:CDS | 40.0% |
| TGATGGCAATGGAAATCGAT+TGG | - | chr4_1:512553-512572 | Msa0527820:CDS | 40.0% | |
| GACATTTGAATCCAGCCATT+TGG | + | chr4_1:512671-512690 | None:intergenic | 40.0% | |
| TGAAAGTGGATAGTAGCTAG+TGG | - | chr4_1:512812-512831 | Msa0527820:intron | 40.0% | |
| GAAAGTGGATAGTAGCTAGT+GGG | - | chr4_1:512813-512832 | Msa0527820:intron | 40.0% | |
| AGAGGAGTCTCAAAATACAG+AGG | - | chr4_1:513468-513487 | Msa0527820:intron | 40.0% | |
| ! | CAAAATACAGAGGTGTAGCA+AGG | - | chr4_1:513478-513497 | Msa0527820:intron | 40.0% |
| ! | TTCCTTCCTTTTCTAGGCTT+AGG | + | chr4_1:513975-513994 | None:intergenic | 40.0% |
| TTTATGTGTGGCAGAGTTGT+GGG | + | chr4_1:514251-514270 | None:intergenic | 40.0% | |
| ! | GTATCTTTGCCCGAGTTTTA+TGG | - | chr4_1:514556-514575 | Msa0527820:intron | 40.0% |
| ATGTTTAGACACCACCACAA+TGG | - | chr4_1:515417-515436 | Msa0527820:intron | 40.0% | |
| !! | TGGAAGTACCATAAGTTCCA+AGG | + | chr4_1:515491-515510 | None:intergenic | 40.0% |
| ! | ATCATTTCTGCCCATTTTCG+TGG | - | chr4_1:515854-515873 | Msa0527820:intron | 40.0% |
| ACACCTTTGTCCACGAAAAT+GGG | + | chr4_1:515867-515886 | None:intergenic | 40.0% | |
| TACACCTTTGTCCACGAAAA+TGG | + | chr4_1:515868-515887 | None:intergenic | 40.0% | |
| !! | TTTTCGTGGACAAAGGTGTA+TGG | - | chr4_1:515868-515887 | Msa0527820:intron | 40.0% |
| GGTGTATGGCTTCACATATT+TGG | - | chr4_1:515882-515901 | Msa0527820:intron | 40.0% | |
| TACTCTTTCCATGTGTCATC+AGG | + | chr4_1:515937-515956 | None:intergenic | 40.0% | |
| !! | GAATTGCTTTTCCTCGTAGT+AGG | + | chr4_1:516215-516234 | None:intergenic | 40.0% |
| ACGAGGAAAAGCAATTCCAA+TGG | - | chr4_1:516218-516237 | Msa0527820:intron | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTA+AGG | - | chr4_1:516627-516646 | Msa0527820:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | - | chr4_1:516628-516647 | Msa0527820:intron | 40.0% |
| TTCCTTAACATGTGCCCTTA+GGG | + | chr4_1:516645-516664 | None:intergenic | 40.0% | |
| TTCTTAACATGTGCCCTTGA+GGG | - | chr4_1:516757-516776 | Msa0527820:intron | 40.0% | |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | + | chr4_1:516773-516792 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr4_1:516774-516793 | None:intergenic | 40.0% |
| GTATCTACCCCTGAAATTTC+GGG | - | chr4_1:516927-516946 | Msa0527820:intron | 40.0% | |
| TCTTGATTGCATTTGAAGGC+AGG | + | chr4_1:516969-516988 | None:intergenic | 40.0% | |
| CCTCTCTTGATTGCATTTGA+AGG | + | chr4_1:516973-516992 | None:intergenic | 40.0% | |
| CCTTCAAATGCAATCAAGAG+AGG | - | chr4_1:516970-516989 | Msa0527820:intron | 40.0% | |
| GTCTAAGTAGACATGAAAGG+AGG | + | chr4_1:517833-517852 | None:intergenic | 40.0% | |
| ATGGCAGCAATAGAGTATAG+AGG | - | chr4_1:518226-518245 | Msa0527820:intron | 40.0% | |
| TGGCAGCAATAGAGTATAGA+GGG | - | chr4_1:518227-518246 | Msa0527820:intron | 40.0% | |
| TTACTATCGTCGTTGTCTTG+TGG | + | chr4_1:518310-518329 | None:intergenic | 40.0% | |
| TGCTAGCAATAATCAAGAGC+TGG | - | chr4_1:518345-518364 | Msa0527820:intron | 40.0% | |
| ! | CTTAATCAAGAACTTGGTGG+TGG | - | chr4_1:518370-518389 | Msa0527820:intron | 40.0% |
| ATAAGATCAGTCGAAGATGC+TGG | + | chr4_1:518403-518422 | None:intergenic | 40.0% | |
| TCAAATCAACCATTCCACGT+CGG | - | chr4_1:518500-518519 | Msa0527820:intron | 40.0% | |
| CTTTGTGGAGGTGAGTTTCT+TGG | + | chr4_1:512205-512224 | None:intergenic | 45.0% | |
| !! | CAGTTTATAGGGGTGTCACA+AGG | - | chr4_1:512230-512249 | Msa0527820:three_prime_UTR | 45.0% |
| GCATTGAGAAACCAAATGGC+TGG | - | chr4_1:512657-512676 | Msa0527820:CDS | 45.0% | |
| CTTGTTTCGTAGTCGAACTG+AGG | - | chr4_1:512765-512784 | Msa0527820:CDS | 45.0% | |
| CTTCAATGCTGCCAAGTCAT+AGG | + | chr4_1:512915-512934 | None:intergenic | 45.0% | |
| ! | ACTTGGCAGCATTGAAGTAC+TGG | - | chr4_1:512918-512937 | Msa0527820:intron | 45.0% |
| ! | CTTGGCAGCATTGAAGTACT+GGG | - | chr4_1:512919-512938 | Msa0527820:intron | 45.0% |
| !! | TTGGCAGCATTGAAGTACTG+GGG | - | chr4_1:512920-512939 | Msa0527820:intron | 45.0% |
| AGAGGACCTAAGCCTAGAAA+AGG | - | chr4_1:513966-513985 | Msa0527820:intron | 45.0% | |
| GACCTAAGCCTAGAAAAGGA+AGG | - | chr4_1:513970-513989 | Msa0527820:intron | 45.0% | |
| GTTTATGTGTGGCAGAGTTG+TGG | + | chr4_1:514252-514271 | None:intergenic | 45.0% | |
| ! | TTAGAGGATGTGATGGTGAG+TGG | + | chr4_1:514311-514330 | None:intergenic | 45.0% |
| ATTAACCCATGATACCCACG+TGG | - | chr4_1:514693-514712 | Msa0527820:intron | 45.0% | |
| TTATCAGTAGCAGACCACGT+GGG | + | chr4_1:514710-514729 | None:intergenic | 45.0% | |
| TTTATCAGTAGCAGACCACG+TGG | + | chr4_1:514711-514730 | None:intergenic | 45.0% | |
| ACACCACCACAATGGAAGAT+GGG | - | chr4_1:515425-515444 | Msa0527820:intron | 45.0% | |
| TCATGTGTCCTGATGACACA+TGG | - | chr4_1:515926-515945 | Msa0527820:intron | 45.0% | |
| AAGTTGCAAGTCCTACTACG+AGG | - | chr4_1:516201-516220 | Msa0527820:intron | 45.0% | |
| GTTCCTTAACATGTGCCCTT+AGG | + | chr4_1:516646-516665 | None:intergenic | 45.0% | |
| CTTCTTAACATGTGCCCTTG+AGG | - | chr4_1:516756-516775 | Msa0527820:intron | 45.0% | |
| TGAAATGCTAACCCCGTGAA+AGG | + | chr4_1:517560-517579 | None:intergenic | 45.0% | |
| TCGTCGTTGTCTTGTGGTTT+AGG | + | chr4_1:518304-518323 | None:intergenic | 45.0% | |
| !! | GGAATGGTTGATTTGACAGG+CGG | + | chr4_1:518496-518515 | None:intergenic | 45.0% |
| !! | CGTGGAATGGTTGATTTGAC+AGG | + | chr4_1:518499-518518 | None:intergenic | 45.0% |
| GGGCTTGATGCTTGATTAGA+AGG | - | chr4_1:518643-518662 | Msa0527820:CDS | 45.0% | |
| GCTCTTACGTGTCATCTTGT+TGG | + | chr4_1:518892-518911 | None:intergenic | 45.0% | |
| !!! | TTTTTTTATTTTGTTTTTAT+AGG | - | chr4_1:515543-515562 | Msa0527820:CDS | 5.0% |
| !! | ATTTATATATAAAAAAGAAA+TGG | - | chr4_1:517354-517373 | Msa0527820:intron | 5.0% |
| TCAAGAGGAGCTCAAAGGGA+TGG | - | chr4_1:513153-513172 | Msa0527820:intron | 50.0% | |
| GACACCACCACAATGGAAGA+TGG | - | chr4_1:515424-515443 | Msa0527820:intron | 50.0% | |
| CTTCCCATCTTCCATTGTGG+TGG | + | chr4_1:515431-515450 | None:intergenic | 50.0% | |
| GAGCTTCCCATCTTCCATTG+TGG | + | chr4_1:515434-515453 | None:intergenic | 50.0% | |
| GGAAGATGGGAAGCTCGAAT+TGG | - | chr4_1:515438-515457 | Msa0527820:intron | 50.0% | |
| ATGGGAAGCTCGAATTGGCA+GGG | - | chr4_1:515443-515462 | Msa0527820:intron | 50.0% | |
| GTGTTTGCTCGCTCACTCTT+TGG | + | chr4_1:515764-515783 | None:intergenic | 50.0% | |
| ! | CTGCCCATTTTCGTGGACAA+AGG | - | chr4_1:515861-515880 | Msa0527820:intron | 50.0% |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr4_1:516640-516659 | Msa0527820:intron | 50.0% |
| ! | TACGTCGTCATAGGTGGGTT+TGG | + | chr4_1:517191-517210 | None:intergenic | 50.0% |
| AGCAGCCACAGCTTATGACA+TGG | - | chr4_1:518207-518226 | Msa0527820:intron | 50.0% | |
| TGCTGCCATGTCATAAGCTG+TGG | + | chr4_1:518215-518234 | None:intergenic | 50.0% | |
| ATCAGTCGAAGATGCTGGTG+TGG | + | chr4_1:518398-518417 | None:intergenic | 50.0% | |
| !! | ATGGTTGATTTGACAGGCGG+TGG | + | chr4_1:518493-518512 | None:intergenic | 50.0% |
| TGGAAATGTCCGACGTGGAA+TGG | + | chr4_1:518512-518531 | None:intergenic | 50.0% | |
| ! | TCTTCTGGAAATGTCCGACG+TGG | + | chr4_1:518517-518536 | None:intergenic | 50.0% |
| TTCTTCCTCTTCCACCACCG+CGG | - | chr4_1:512156-512175 | Msa0527820:three_prime_UTR | 55.0% | |
| TTTACGTTTCACCGCGGTGG+TGG | + | chr4_1:512170-512189 | None:intergenic | 55.0% | |
| ACGTTTACGTTTCACCGCGG+TGG | + | chr4_1:512173-512192 | None:intergenic | 55.0% | |
| TGCAGCACGTGCCTATGACT+TGG | - | chr4_1:512901-512920 | Msa0527820:intron | 55.0% | |
| GAGGAGCTCAAAGGGATGGA+AGG | - | chr4_1:513157-513176 | Msa0527820:intron | 55.0% | |
| TGGGAGAAGCAACTCCCATC+CGG | - | chr4_1:514013-514032 | Msa0527820:intron | 55.0% | |
| ! | GGATGTGATGGTGAGTGGCT+TGG | + | chr4_1:514306-514325 | None:intergenic | 55.0% |
| GCAGACCACGTGGGTATCAT+GGG | + | chr4_1:514701-514720 | None:intergenic | 55.0% | |
| AGCAGACCACGTGGGTATCA+TGG | + | chr4_1:514702-514721 | None:intergenic | 55.0% | |
| GATGGGAAGCTCGAATTGGC+AGG | - | chr4_1:515442-515461 | Msa0527820:intron | 55.0% | |
| GCTCGAATTGGCAGGGTCTT+CGG | - | chr4_1:515450-515469 | Msa0527820:intron | 55.0% | |
| !! | TTTCACCGCGGTGGTGGAAG+AGG | + | chr4_1:512164-512183 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 512049 | 518965 | 512049 | ID=Msa0527820;Name=Msa0527820 |
| chr4_1 | mRNA | 512049 | 518965 | 512049 | ID=Msa0527820-mRNA-1;Parent=Msa0527820;Name=Msa0527820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=63|1|1|1|1|1|7|308|325 |
| chr4_1 | exon | 512049 | 512820 | 512049 | ID=Msa0527820-mRNA-1:exon:99;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 515513 | 515589 | 515513 | ID=Msa0527820-mRNA-1:exon:98;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 517515 | 517565 | 517515 | ID=Msa0527820-mRNA-1:exon:97;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 517799 | 517872 | 517799 | ID=Msa0527820-mRNA-1:exon:96;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 518047 | 518135 | 518047 | ID=Msa0527820-mRNA-1:exon:95;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 518589 | 518671 | 518589 | ID=Msa0527820-mRNA-1:exon:94;Parent=Msa0527820-mRNA-1 |
| chr4_1 | exon | 518763 | 518965 | 518763 | ID=Msa0527820-mRNA-1:exon:93;Parent=Msa0527820-mRNA-1 |
| chr4_1 | five_prime_UTR | 518903 | 518965 | 518903 | ID=Msa0527820-mRNA-1:five_prime_utr;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 518763 | 518902 | 518763 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 518589 | 518671 | 518589 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 518047 | 518135 | 518047 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 517799 | 517872 | 517799 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 517515 | 517565 | 517515 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 515513 | 515589 | 515513 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | CDS | 512357 | 512820 | 512357 | ID=Msa0527820-mRNA-1:cds;Parent=Msa0527820-mRNA-1 |
| chr4_1 | three_prime_UTR | 512049 | 512356 | 512049 | ID=Msa0527820-mRNA-1:three_prime_utr;Parent=Msa0527820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
