Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626070 | XP_013454526.1 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626070 | A0A072UFU8 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0626070 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626070 | Msa0663950 | 0.844557 | 7.020873e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626070 | MtrunA17_Chr4g0001831 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Msa0626070 | MtrunA17_Chr2g0286191 | 37.158 | 366 | 218 | 5 | 14 | 378 | 6 | 360 | 1.41e-68 | 220 |
| Msa0626070 | MtrunA17_Chr4g0067121 | 34.835 | 333 | 209 | 5 | 45 | 375 | 52 | 378 | 1.01e-58 | 195 |
| Msa0626070 | MtrunA17_Chr4g0067671 | 32.641 | 337 | 213 | 5 | 27 | 360 | 30 | 355 | 1.83e-57 | 191 |
| Msa0626070 | MtrunA17_Chr2g0296301 | 29.851 | 335 | 226 | 3 | 43 | 374 | 35 | 363 | 2.02e-53 | 181 |
| Msa0626070 | MtrunA17_Chr2g0296121 | 33.148 | 359 | 226 | 7 | 22 | 375 | 105 | 454 | 3.98e-53 | 182 |
| Msa0626070 | MtrunA17_Chr4g0067141 | 32.877 | 365 | 225 | 6 | 22 | 379 | 23 | 374 | 6.72e-53 | 179 |
| Msa0626070 | MtrunA17_Chr2g0295761 | 33.526 | 346 | 210 | 6 | 36 | 374 | 54 | 386 | 3.88e-52 | 178 |
| Msa0626070 | MtrunA17_Chr2g0295731 | 30.939 | 362 | 240 | 6 | 17 | 375 | 21 | 375 | 6.53e-50 | 172 |
| Msa0626070 | MtrunA17_Chr2g0296151 | 30.811 | 370 | 245 | 6 | 11 | 375 | 5 | 368 | 6.77e-49 | 169 |
| Msa0626070 | MtrunA17_Chr2g0296111 | 32.861 | 353 | 217 | 9 | 13 | 356 | 9 | 350 | 6.76e-48 | 167 |
| Msa0626070 | MtrunA17_Chr2g0295741 | 30.423 | 355 | 235 | 6 | 24 | 375 | 29 | 374 | 7.29e-47 | 164 |
| Msa0626070 | MtrunA17_Chr2g0296191 | 32.011 | 378 | 243 | 8 | 1 | 375 | 142 | 508 | 8.42e-47 | 171 |
| Msa0626070 | MtrunA17_Chr2g0296191 | 31.564 | 358 | 235 | 6 | 24 | 374 | 640 | 994 | 6.12e-45 | 166 |
| Msa0626070 | MtrunA17_Chr2g0296291 | 29.067 | 375 | 223 | 5 | 39 | 375 | 27 | 396 | 5.09e-46 | 162 |
| Msa0626070 | MtrunA17_Chr2g0296711 | 29.970 | 337 | 228 | 6 | 46 | 378 | 55 | 387 | 7.38e-45 | 160 |
| Msa0626070 | MtrunA17_Chr2g0296171 | 29.288 | 379 | 252 | 8 | 15 | 380 | 23 | 398 | 5.64e-44 | 157 |
| Msa0626070 | MtrunA17_Chr2g0296221 | 30.028 | 363 | 242 | 7 | 22 | 375 | 53 | 412 | 1.00e-43 | 157 |
| Msa0626070 | MtrunA17_Chr2g0296231 | 30.422 | 332 | 223 | 5 | 46 | 374 | 51 | 377 | 2.93e-43 | 155 |
| Msa0626070 | MtrunA17_Chr2g0296251 | 28.947 | 380 | 225 | 8 | 35 | 375 | 23 | 396 | 3.22e-43 | 154 |
| Msa0626070 | MtrunA17_Chr2g0296721 | 30.435 | 368 | 243 | 8 | 15 | 374 | 17 | 379 | 3.57e-42 | 152 |
| Msa0626070 | MtrunA17_Chr2g0296741 | 29.620 | 368 | 247 | 8 | 15 | 374 | 37 | 400 | 5.18e-42 | 152 |
| Msa0626070 | MtrunA17_Chr2g0315731 | 30.707 | 368 | 243 | 8 | 15 | 374 | 37 | 400 | 6.30e-42 | 152 |
| Msa0626070 | MtrunA17_Chr2g0296181 | 28.412 | 359 | 220 | 8 | 22 | 375 | 29 | 355 | 1.38e-35 | 134 |
| Msa0626070 | MtrunA17_Chr8g0377801 | 24.927 | 341 | 236 | 3 | 36 | 375 | 64 | 385 | 6.36e-31 | 121 |
| Msa0626070 | MtrunA17_Chr2g0286221 | 37.888 | 161 | 98 | 2 | 219 | 379 | 13 | 171 | 1.01e-29 | 113 |
| Msa0626070 | MtrunA17_Chr8g0377781 | 27.485 | 342 | 238 | 5 | 44 | 380 | 41 | 377 | 2.36e-29 | 117 |
| Msa0626070 | MtrunA17_Chr2g0296131 | 31.169 | 154 | 106 | 0 | 222 | 375 | 7 | 160 | 2.27e-22 | 93.2 |
| Msa0626070 | MtrunA17_Chr2g0296161 | 29.605 | 152 | 107 | 0 | 224 | 375 | 5 | 156 | 4.61e-21 | 89.4 |
| Msa0626070 | MtrunA17_Chr2g0295711 | 37.143 | 175 | 103 | 5 | 27 | 198 | 30 | 200 | 6.42e-21 | 90.1 |
| Msa0626070 | MtrunA17_Chr2g0296551 | 30.220 | 182 | 123 | 3 | 195 | 375 | 4 | 182 | 4.90e-20 | 87.4 |
| Msa0626070 | MtrunA17_Chr2g0296211 | 28.767 | 219 | 135 | 6 | 177 | 375 | 139 | 356 | 4.90e-20 | 90.5 |
| Msa0626070 | MtrunA17_Chr2g0295721 | 34.746 | 118 | 77 | 0 | 221 | 338 | 2 | 119 | 2.57e-16 | 74.7 |
| Msa0626070 | MtrunA17_Chr2g0296561 | 37.209 | 129 | 75 | 2 | 18 | 145 | 15 | 138 | 6.22e-15 | 71.6 |
| Msa0626070 | MtrunA17_Chr2g0296701 | 29.221 | 154 | 107 | 2 | 223 | 375 | 2 | 154 | 2.40e-14 | 70.9 |
| Msa0626070 | MtrunA17_Chr2g0296751 | 28.346 | 127 | 91 | 0 | 249 | 375 | 1 | 127 | 2.85e-13 | 67.4 |
| Msa0626070 | MtrunA17_Chr2g0295751 | 32.624 | 141 | 92 | 2 | 32 | 169 | 35 | 175 | 2.13e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626070 | AT5G07900.1 | 41.176 | 340 | 197 | 3 | 37 | 374 | 61 | 399 | 2.67e-88 | 273 |
| Msa0626070 | AT1G21150.1 | 33.693 | 371 | 239 | 4 | 10 | 374 | 17 | 386 | 2.69e-61 | 202 |
| Msa0626070 | AT1G21150.2 | 33.693 | 371 | 239 | 4 | 10 | 374 | 81 | 450 | 1.20e-60 | 202 |
| Msa0626070 | AT1G21150.3 | 34.000 | 350 | 222 | 4 | 33 | 374 | 2 | 350 | 2.45e-59 | 196 |
| Msa0626070 | AT1G62120.1 | 30.179 | 391 | 226 | 7 | 14 | 360 | 18 | 405 | 3.77e-43 | 155 |
| Msa0626070 | AT1G61980.3 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0626070 | AT1G61980.2 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0626070 | AT1G61980.1 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0626070 | AT1G61970.2 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.7 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.6 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.3 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.5 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.4 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61970.1 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0626070 | AT1G61990.2 | 28.052 | 385 | 226 | 6 | 27 | 371 | 32 | 405 | 1.30e-39 | 145 |
| Msa0626070 | AT1G61990.1 | 28.052 | 385 | 226 | 6 | 27 | 371 | 32 | 405 | 1.30e-39 | 145 |
| Msa0626070 | AT3G46950.1 | 32.226 | 301 | 188 | 6 | 14 | 309 | 18 | 307 | 9.06e-38 | 141 |
| Msa0626070 | AT5G23930.1 | 29.120 | 443 | 222 | 10 | 7 | 370 | 12 | 441 | 5.53e-36 | 137 |
| Msa0626070 | AT1G62010.1 | 29.282 | 362 | 192 | 9 | 42 | 361 | 45 | 384 | 6.18e-36 | 135 |
| Msa0626070 | AT1G62150.1 | 31.900 | 279 | 175 | 5 | 35 | 307 | 48 | 317 | 1.32e-33 | 130 |
| Msa0626070 | AT1G62085.1 | 32.248 | 307 | 185 | 8 | 14 | 307 | 18 | 314 | 1.78e-32 | 127 |
| Msa0626070 | AT1G62085.2 | 32.248 | 307 | 185 | 8 | 14 | 307 | 18 | 314 | 1.78e-32 | 127 |
| Msa0626070 | AT1G61960.1 | 33.577 | 274 | 173 | 6 | 27 | 296 | 32 | 300 | 1.47e-31 | 124 |
| Msa0626070 | AT1G62110.1 | 31.633 | 294 | 174 | 7 | 27 | 307 | 32 | 311 | 3.70e-31 | 123 |
| Msa0626070 | AT5G64950.1 | 29.221 | 308 | 207 | 5 | 77 | 375 | 71 | 376 | 1.16e-30 | 121 |
| Msa0626070 | AT1G56380.1 | 23.161 | 367 | 231 | 11 | 39 | 361 | 10 | 369 | 2.14e-18 | 86.3 |
| Msa0626070 | AT1G56380.2 | 23.161 | 367 | 231 | 11 | 39 | 361 | 21 | 380 | 2.72e-18 | 86.3 |
| Msa0626070 | AT1G62490.1 | 27.341 | 267 | 150 | 7 | 30 | 296 | 83 | 305 | 2.66e-15 | 76.6 |
Find 66 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACCTTGTTGAAAGTTTA+AGG | 0.085452 | 4_3:-5447994 | None:intergenic |
| GAAAGATTTGCCATTGTTAT+TGG | 0.156741 | 4_3:+5448900 | Msa0626070:CDS |
| CTTGTCACCAATCAAGATTT+TGG | 0.169173 | 4_3:-5448200 | None:intergenic |
| TAAGTATGGACAAAGAAATT+TGG | 0.197332 | 4_3:+5448548 | Msa0626070:CDS |
| TATGAAAACAATGGACTTCT+TGG | 0.234883 | 4_3:+5448675 | Msa0626070:CDS |
| GAATGCTACACAAGGAAAAT+TGG | 0.258902 | 4_3:-5448428 | None:intergenic |
| CCTAGTTTGCGATGATAAAA+AGG | 0.296431 | 4_3:+5448279 | Msa0626070:CDS |
| TTCCTCACTTGTCATAATAA+AGG | 0.304109 | 4_3:-5448845 | None:intergenic |
| AAAGAACAGTAGTTGAATAA+AGG | 0.305931 | 4_3:-5447853 | None:intergenic |
| AATGGCAAATCTTTCTGAAA+TGG | 0.311445 | 4_3:-5448892 | None:intergenic |
| AAAAGCTGAATAACAGCATT+TGG | 0.312391 | 4_3:-5448037 | None:intergenic |
| ATAACAGCATTTGGGCCATT+AGG | 0.321633 | 4_3:-5448028 | None:intergenic |
| ACAGCAGAGAAAAGTGAAAA+AGG | 0.329234 | 4_3:-5447890 | None:intergenic |
| AAGTATGGACAAAGAAATTT+GGG | 0.343578 | 4_3:+5448549 | Msa0626070:CDS |
| GATTTCCCCAAAATCTTGAT+TGG | 0.348520 | 4_3:+5448193 | Msa0626070:CDS |
| TCAAAGTTCTATTTCCAGTT+TGG | 0.350471 | 4_3:+5448402 | Msa0626070:CDS |
| TAACAGCATTTGGGCCATTA+GGG | 0.351944 | 4_3:-5448027 | None:intergenic |
| GGGCATGTAGCAATGTCTTC+TGG | 0.354285 | 4_3:-5448718 | None:intergenic |
| GTTAATTCAGTAAAAGAAAT+GGG | 0.366519 | 4_3:+5448478 | Msa0626070:CDS |
| TCACATACTCAGGATACTTT+AGG | 0.366731 | 4_3:-5448633 | None:intergenic |
| ATGGCAAATCTTTCTGAAAT+GGG | 0.369413 | 4_3:-5448891 | None:intergenic |
| CAACCTTGTTGAAAGTTTAA+GGG | 0.375048 | 4_3:-5447993 | None:intergenic |
| ATCTTGATAACAGCACATTT+AGG | 0.385800 | 4_3:-5448778 | None:intergenic |
| AGGAAAATTGGATACCAAAC+TGG | 0.392789 | 4_3:-5448416 | None:intergenic |
| TGTTAATTCAGTAAAAGAAA+TGG | 0.415470 | 4_3:+5448477 | Msa0626070:CDS |
| ACAACCCACATGAGTTTATG+AGG | 0.423242 | 4_3:-5447958 | None:intergenic |
| AAGTGTCTTCTCCAAGTTGC+GGG | 0.424163 | 4_3:-5448752 | None:intergenic |
| AAGAACAGTAGTTGAATAAA+GGG | 0.427774 | 4_3:-5447852 | None:intergenic |
| TCCAACACAAATCAACATAA+AGG | 0.430035 | 4_3:+5447914 | Msa0626070:CDS |
| TAGCTTTGAGGCGTGGATCA+TGG | 0.435733 | 4_3:+5448308 | Msa0626070:CDS |
| GATTCGAGTAATTGTAAGTA+TGG | 0.436929 | 4_3:+5448534 | Msa0626070:CDS |
| TTCCTCAAAACCTCAATGTT+CGG | 0.445259 | 4_3:-5448367 | None:intergenic |
| AAAAGGTAGTTCTAGCTTTG+AGG | 0.445792 | 4_3:+5448296 | Msa0626070:CDS |
| CTCAACAAATCTAGAATGCT+TGG | 0.457146 | 4_3:-5448452 | None:intergenic |
| ACCTTTATGTTGATTTGTGT+TGG | 0.460913 | 4_3:-5447915 | None:intergenic |
| AAGTTGCGGGTCAGAATCCC+AGG | 0.461038 | 4_3:-5448739 | None:intergenic |
| AAAGCTGAATAACAGCATTT+GGG | 0.472696 | 4_3:-5448036 | None:intergenic |
| TCAAGAGGTTTAATAAAGAG+TGG | 0.472917 | 4_3:+5448808 | Msa0626070:CDS |
| GAAGACATTGCTACATGCCC+TGG | 0.473610 | 4_3:+5448721 | Msa0626070:CDS |
| CAAAAGGGTGTTTCTTAACA+AGG | 0.481935 | 4_3:-5448096 | None:intergenic |
| TTGCAACTCATAAACCCTAA+TGG | 0.484587 | 4_3:+5448013 | Msa0626070:CDS |
| GGACTTCTTGGTGAAGGATG+TGG | 0.492155 | 4_3:+5448687 | Msa0626070:CDS |
| TATGAGGTTTGACAATGTAA+AGG | 0.499828 | 4_3:-5447942 | None:intergenic |
| TGGGATTCTGACCCGCAACT+TGG | 0.503137 | 4_3:+5448741 | Msa0626070:CDS |
| ATCAATGGTTGAAGCCCCAA+TGG | 0.538102 | 4_3:-5448173 | None:intergenic |
| CAAGCATTCTAGATTTGTTG+AGG | 0.552143 | 4_3:+5448453 | Msa0626070:CDS |
| GACTTCTTGGTGAAGGATGT+GGG | 0.555487 | 4_3:+5448688 | Msa0626070:CDS |
| GCAATGAGAAAATGATACAT+TGG | 0.568531 | 4_3:-5447806 | None:intergenic |
| AAAACAAAATACAACTTCGA+AGG | 0.568698 | 4_3:-5448508 | None:intergenic |
| TCTGAGATCATCACATACTC+AGG | 0.569253 | 4_3:-5448643 | None:intergenic |
| TGATTCTGTTCCGAACATTG+AGG | 0.570760 | 4_3:+5448357 | Msa0626070:CDS |
| TCAAACCTCATAAACTCATG+TGG | 0.578097 | 4_3:+5447953 | Msa0626070:CDS |
| GTAGTTCTAGCTTTGAGGCG+TGG | 0.585169 | 4_3:+5448301 | Msa0626070:CDS |
| AACAATGGACTTCTTGGTGA+AGG | 0.587900 | 4_3:+5448681 | Msa0626070:CDS |
| AAGACATTGCTACATGCCCT+GGG | 0.601471 | 4_3:+5448722 | Msa0626070:CDS |
| CAAGTGTCTTCTCCAAGTTG+CGG | 0.602943 | 4_3:-5448753 | None:intergenic |
| AAACTGGAAATAGAACTTTG+AGG | 0.609479 | 4_3:-5448400 | None:intergenic |
| TACCTTTATTATGACAAGTG+AGG | 0.612836 | 4_3:+5448843 | Msa0626070:CDS |
| TGGCAAATCTTTCTGAAATG+GGG | 0.627523 | 4_3:-5448890 | None:intergenic |
| TTATATGCATCCAATAACAA+TGG | 0.629215 | 4_3:-5448910 | None:intergenic |
| TTAATTCAGTAAAAGAAATG+GGG | 0.635626 | 4_3:+5448479 | Msa0626070:CDS |
| CGGAACAGAATCATTAACCA+TGG | 0.638798 | 4_3:-5448347 | None:intergenic |
| CAAACCTCATAAACTCATGT+GGG | 0.639091 | 4_3:+5447954 | Msa0626070:CDS |
| AAGCCCTTAAACTTTCAACA+AGG | 0.642886 | 4_3:+5447990 | Msa0626070:CDS |
| TGCTTGGTGAATGCTACACA+AGG | 0.683625 | 4_3:-5448436 | None:intergenic |
| AGTTGCGGGTCAGAATCCCA+GGG | 0.702455 | 4_3:-5448738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_3:5448114-5448133 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_3:5448666-5448685 | Msa0626070:CDS | 15.0% |
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_3:5448114-5448133 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_3:5448666-5448685 | Msa0626070:CDS | 15.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_3:5448115-5448134 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_3:5448477-5448496 | Msa0626070:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_3:5448478-5448497 | Msa0626070:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_3:5448479-5448498 | Msa0626070:CDS | 20.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_3:5448115-5448134 | None:intergenic | 20.0% |
| !! | TGTTAATTCAGTAAAAGAAA+TGG | + | chr4_3:5448477-5448496 | Msa0626070:CDS | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_3:5448478-5448497 | Msa0626070:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_3:5448479-5448498 | Msa0626070:CDS | 20.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_3:5447855-5447874 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_3:5447856-5447875 | None:intergenic | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_3:5448511-5448530 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_3:5448510-5448529 | Msa0626070:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_3:5448548-5448567 | Msa0626070:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_3:5448549-5448568 | Msa0626070:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_3:5448575-5448594 | Msa0626070:CDS | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_3:5448913-5448932 | None:intergenic | 25.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_3:5447855-5447874 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_3:5447856-5447875 | None:intergenic | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_3:5448511-5448530 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_3:5448510-5448529 | Msa0626070:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_3:5448548-5448567 | Msa0626070:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_3:5448549-5448568 | Msa0626070:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_3:5448575-5448594 | Msa0626070:CDS | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_3:5448913-5448932 | None:intergenic | 25.0% |
| TCCAACACAAATCAACATAA+AGG | + | chr4_3:5447914-5447933 | Msa0626070:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_3:5447918-5447937 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_3:5447945-5447964 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_3:5447996-5448015 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_3:5448039-5448058 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_3:5448040-5448059 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_3:5448146-5448165 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_3:5448147-5448166 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_3:5448154-5448173 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_3:5448158-5448177 | Msa0626070:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_3:5448202-5448221 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_3:5448259-5448278 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_3:5448330-5448349 | Msa0626070:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_3:5448403-5448422 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_3:5448402-5448421 | Msa0626070:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_3:5448534-5448553 | Msa0626070:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_3:5448578-5448597 | Msa0626070:CDS | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_3:5448579-5448598 | Msa0626070:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_3:5448675-5448694 | Msa0626070:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_3:5448781-5448800 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_3:5448793-5448812 | Msa0626070:CDS | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_3:5448808-5448827 | Msa0626070:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_3:5448843-5448862 | Msa0626070:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_3:5448848-5448867 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_3:5448894-5448913 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_3:5448895-5448914 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_3:5448900-5448919 | Msa0626070:CDS | 30.0% | |
| TCCAACACAAATCAACATAA+AGG | + | chr4_3:5447914-5447933 | Msa0626070:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_3:5447918-5447937 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_3:5447945-5447964 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_3:5447996-5448015 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_3:5448039-5448058 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_3:5448040-5448059 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_3:5448146-5448165 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_3:5448147-5448166 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_3:5448154-5448173 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_3:5448158-5448177 | Msa0626070:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_3:5448202-5448221 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_3:5448259-5448278 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_3:5448330-5448349 | Msa0626070:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_3:5448403-5448422 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_3:5448402-5448421 | Msa0626070:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_3:5448534-5448553 | Msa0626070:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_3:5448578-5448597 | Msa0626070:CDS | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_3:5448579-5448598 | Msa0626070:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_3:5448675-5448694 | Msa0626070:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_3:5448781-5448800 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_3:5448793-5448812 | Msa0626070:CDS | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_3:5448808-5448827 | Msa0626070:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_3:5448843-5448862 | Msa0626070:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_3:5448848-5448867 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_3:5448894-5448913 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_3:5448895-5448914 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_3:5448900-5448919 | Msa0626070:CDS | 30.0% | |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_3:5447893-5447912 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_3:5447953-5447972 | Msa0626070:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_3:5447954-5447973 | Msa0626070:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_3:5447986-5448005 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_3:5447990-5448009 | Msa0626070:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_3:5447997-5448016 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_3:5448013-5448032 | Msa0626070:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_3:5448049-5448068 | Msa0626070:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_3:5448099-5448118 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_3:5448157-5448176 | Msa0626070:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_3:5448159-5448178 | Msa0626070:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_3:5448191-5448210 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_3:5448193-5448212 | Msa0626070:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_3:5448201-5448220 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_3:5448203-5448222 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_3:5448282-5448301 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_3:5448279-5448298 | Msa0626070:CDS | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_3:5448296-5448315 | Msa0626070:CDS | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_3:5448370-5448389 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_3:5448419-5448438 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_3:5448431-5448450 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_3:5448455-5448474 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_3:5448453-5448472 | Msa0626070:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_3:5448580-5448599 | Msa0626070:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_3:5448636-5448655 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_3:5448893-5448912 | None:intergenic | 35.0% |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_3:5447893-5447912 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_3:5447953-5447972 | Msa0626070:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_3:5447954-5447973 | Msa0626070:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_3:5447986-5448005 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_3:5447990-5448009 | Msa0626070:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_3:5447997-5448016 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_3:5448013-5448032 | Msa0626070:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_3:5448049-5448068 | Msa0626070:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_3:5448099-5448118 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_3:5448157-5448176 | Msa0626070:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_3:5448159-5448178 | Msa0626070:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_3:5448191-5448210 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_3:5448193-5448212 | Msa0626070:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_3:5448201-5448220 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_3:5448203-5448222 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_3:5448282-5448301 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_3:5448279-5448298 | Msa0626070:CDS | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_3:5448296-5448315 | Msa0626070:CDS | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_3:5448370-5448389 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_3:5448419-5448438 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_3:5448431-5448450 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_3:5448455-5448474 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_3:5448453-5448472 | Msa0626070:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_3:5448580-5448599 | Msa0626070:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_3:5448636-5448655 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_3:5448893-5448912 | None:intergenic | 35.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_3:5447961-5447980 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_3:5448030-5448049 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_3:5448031-5448050 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_3:5448219-5448238 | Msa0626070:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_3:5448350-5448369 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_3:5448357-5448376 | Msa0626070:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_3:5448365-5448384 | Msa0626070:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_3:5448373-5448392 | Msa0626070:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_3:5448646-5448665 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_3:5448681-5448700 | Msa0626070:CDS | 40.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_3:5447961-5447980 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_3:5448030-5448049 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_3:5448031-5448050 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_3:5448219-5448238 | Msa0626070:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_3:5448350-5448369 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_3:5448357-5448376 | Msa0626070:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_3:5448365-5448384 | Msa0626070:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_3:5448373-5448392 | Msa0626070:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_3:5448646-5448665 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_3:5448681-5448700 | Msa0626070:CDS | 40.0% |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_3:5448176-5448195 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_3:5448439-5448458 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_3:5448688-5448707 | Msa0626070:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_3:5448722-5448741 | Msa0626070:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_3:5448755-5448774 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_3:5448756-5448775 | None:intergenic | 45.0% | |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_3:5448176-5448195 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_3:5448439-5448458 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_3:5448688-5448707 | Msa0626070:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_3:5448722-5448741 | Msa0626070:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_3:5448755-5448774 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_3:5448756-5448775 | None:intergenic | 45.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_3:5448301-5448320 | Msa0626070:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_3:5448308-5448327 | Msa0626070:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_3:5448687-5448706 | Msa0626070:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_3:5448721-5448740 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_3:5448721-5448740 | Msa0626070:CDS | 50.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_3:5448301-5448320 | Msa0626070:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_3:5448308-5448327 | Msa0626070:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_3:5448687-5448706 | Msa0626070:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_3:5448721-5448740 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_3:5448721-5448740 | Msa0626070:CDS | 50.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_3:5448584-5448603 | Msa0626070:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_3:5448741-5448760 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_3:5448742-5448761 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_3:5448741-5448760 | Msa0626070:CDS | 55.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_3:5448584-5448603 | Msa0626070:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_3:5448741-5448760 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_3:5448742-5448761 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_3:5448741-5448760 | Msa0626070:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5447809 | 5448951 | 5447809 | ID=Msa0626070;Name=Msa0626070 |
| chr4_3 | mRNA | 5447809 | 5448951 | 5447809 | ID=Msa0626070-mRNA-1;Parent=Msa0626070;Name=Msa0626070-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|380 |
| chr4_3 | exon | 5447809 | 5448951 | 5447809 | ID=Msa0626070-mRNA-1:exon:1507;Parent=Msa0626070-mRNA-1 |
| chr4_3 | CDS | 5447809 | 5448951 | 5447809 | ID=Msa0626070-mRNA-1:cds;Parent=Msa0626070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
