Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663950 | XP_013454526.1 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663950 | A0A072UFU8 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0663950 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626070 | Msa0663950 | 0.844557 | 7.020873e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663950 | MtrunA17_Chr4g0001831 | 95.526 | 380 | 10 | 1 | 1 | 380 | 1 | 373 | 0.0 | 737 |
| Msa0663950 | MtrunA17_Chr2g0286191 | 37.158 | 366 | 218 | 5 | 14 | 378 | 6 | 360 | 1.41e-68 | 220 |
| Msa0663950 | MtrunA17_Chr4g0067121 | 34.835 | 333 | 209 | 5 | 45 | 375 | 52 | 378 | 1.01e-58 | 195 |
| Msa0663950 | MtrunA17_Chr4g0067671 | 32.641 | 337 | 213 | 5 | 27 | 360 | 30 | 355 | 1.83e-57 | 191 |
| Msa0663950 | MtrunA17_Chr2g0296301 | 29.851 | 335 | 226 | 3 | 43 | 374 | 35 | 363 | 2.02e-53 | 181 |
| Msa0663950 | MtrunA17_Chr2g0296121 | 33.148 | 359 | 226 | 7 | 22 | 375 | 105 | 454 | 3.98e-53 | 182 |
| Msa0663950 | MtrunA17_Chr4g0067141 | 32.877 | 365 | 225 | 6 | 22 | 379 | 23 | 374 | 6.72e-53 | 179 |
| Msa0663950 | MtrunA17_Chr2g0295761 | 33.526 | 346 | 210 | 6 | 36 | 374 | 54 | 386 | 3.88e-52 | 178 |
| Msa0663950 | MtrunA17_Chr2g0295731 | 30.939 | 362 | 240 | 6 | 17 | 375 | 21 | 375 | 6.53e-50 | 172 |
| Msa0663950 | MtrunA17_Chr2g0296151 | 30.811 | 370 | 245 | 6 | 11 | 375 | 5 | 368 | 6.77e-49 | 169 |
| Msa0663950 | MtrunA17_Chr2g0296111 | 32.861 | 353 | 217 | 9 | 13 | 356 | 9 | 350 | 6.76e-48 | 167 |
| Msa0663950 | MtrunA17_Chr2g0295741 | 30.423 | 355 | 235 | 6 | 24 | 375 | 29 | 374 | 7.29e-47 | 164 |
| Msa0663950 | MtrunA17_Chr2g0296191 | 32.011 | 378 | 243 | 8 | 1 | 375 | 142 | 508 | 8.42e-47 | 171 |
| Msa0663950 | MtrunA17_Chr2g0296191 | 31.564 | 358 | 235 | 6 | 24 | 374 | 640 | 994 | 6.12e-45 | 166 |
| Msa0663950 | MtrunA17_Chr2g0296291 | 29.067 | 375 | 223 | 5 | 39 | 375 | 27 | 396 | 5.09e-46 | 162 |
| Msa0663950 | MtrunA17_Chr2g0296711 | 29.970 | 337 | 228 | 6 | 46 | 378 | 55 | 387 | 7.38e-45 | 160 |
| Msa0663950 | MtrunA17_Chr2g0296171 | 29.288 | 379 | 252 | 8 | 15 | 380 | 23 | 398 | 5.64e-44 | 157 |
| Msa0663950 | MtrunA17_Chr2g0296221 | 30.028 | 363 | 242 | 7 | 22 | 375 | 53 | 412 | 1.00e-43 | 157 |
| Msa0663950 | MtrunA17_Chr2g0296231 | 30.422 | 332 | 223 | 5 | 46 | 374 | 51 | 377 | 2.93e-43 | 155 |
| Msa0663950 | MtrunA17_Chr2g0296251 | 28.947 | 380 | 225 | 8 | 35 | 375 | 23 | 396 | 3.22e-43 | 154 |
| Msa0663950 | MtrunA17_Chr2g0296721 | 30.435 | 368 | 243 | 8 | 15 | 374 | 17 | 379 | 3.57e-42 | 152 |
| Msa0663950 | MtrunA17_Chr2g0296741 | 29.620 | 368 | 247 | 8 | 15 | 374 | 37 | 400 | 5.18e-42 | 152 |
| Msa0663950 | MtrunA17_Chr2g0315731 | 30.707 | 368 | 243 | 8 | 15 | 374 | 37 | 400 | 6.30e-42 | 152 |
| Msa0663950 | MtrunA17_Chr2g0296181 | 28.412 | 359 | 220 | 8 | 22 | 375 | 29 | 355 | 1.38e-35 | 134 |
| Msa0663950 | MtrunA17_Chr8g0377801 | 24.927 | 341 | 236 | 3 | 36 | 375 | 64 | 385 | 6.36e-31 | 121 |
| Msa0663950 | MtrunA17_Chr2g0286221 | 37.888 | 161 | 98 | 2 | 219 | 379 | 13 | 171 | 1.01e-29 | 113 |
| Msa0663950 | MtrunA17_Chr8g0377781 | 27.485 | 342 | 238 | 5 | 44 | 380 | 41 | 377 | 2.36e-29 | 117 |
| Msa0663950 | MtrunA17_Chr2g0296131 | 31.169 | 154 | 106 | 0 | 222 | 375 | 7 | 160 | 2.27e-22 | 93.2 |
| Msa0663950 | MtrunA17_Chr2g0296161 | 29.605 | 152 | 107 | 0 | 224 | 375 | 5 | 156 | 4.61e-21 | 89.4 |
| Msa0663950 | MtrunA17_Chr2g0295711 | 37.143 | 175 | 103 | 5 | 27 | 198 | 30 | 200 | 6.42e-21 | 90.1 |
| Msa0663950 | MtrunA17_Chr2g0296551 | 30.220 | 182 | 123 | 3 | 195 | 375 | 4 | 182 | 4.90e-20 | 87.4 |
| Msa0663950 | MtrunA17_Chr2g0296211 | 28.767 | 219 | 135 | 6 | 177 | 375 | 139 | 356 | 4.90e-20 | 90.5 |
| Msa0663950 | MtrunA17_Chr2g0295721 | 34.746 | 118 | 77 | 0 | 221 | 338 | 2 | 119 | 2.57e-16 | 74.7 |
| Msa0663950 | MtrunA17_Chr2g0296561 | 37.209 | 129 | 75 | 2 | 18 | 145 | 15 | 138 | 6.22e-15 | 71.6 |
| Msa0663950 | MtrunA17_Chr2g0296701 | 29.221 | 154 | 107 | 2 | 223 | 375 | 2 | 154 | 2.40e-14 | 70.9 |
| Msa0663950 | MtrunA17_Chr2g0296751 | 28.346 | 127 | 91 | 0 | 249 | 375 | 1 | 127 | 2.85e-13 | 67.4 |
| Msa0663950 | MtrunA17_Chr2g0295751 | 32.624 | 141 | 92 | 2 | 32 | 169 | 35 | 175 | 2.13e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663950 | AT5G07900.1 | 41.176 | 340 | 197 | 3 | 37 | 374 | 61 | 399 | 2.67e-88 | 273 |
| Msa0663950 | AT1G21150.1 | 33.693 | 371 | 239 | 4 | 10 | 374 | 17 | 386 | 2.69e-61 | 202 |
| Msa0663950 | AT1G21150.2 | 33.693 | 371 | 239 | 4 | 10 | 374 | 81 | 450 | 1.20e-60 | 202 |
| Msa0663950 | AT1G21150.3 | 34.000 | 350 | 222 | 4 | 33 | 374 | 2 | 350 | 2.45e-59 | 196 |
| Msa0663950 | AT1G62120.1 | 30.179 | 391 | 226 | 7 | 14 | 360 | 18 | 405 | 3.77e-43 | 155 |
| Msa0663950 | AT1G61980.3 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0663950 | AT1G61980.2 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0663950 | AT1G61980.1 | 29.412 | 357 | 210 | 5 | 41 | 360 | 48 | 399 | 9.57e-40 | 146 |
| Msa0663950 | AT1G61970.2 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.7 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.6 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.3 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.5 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.4 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61970.1 | 28.650 | 363 | 207 | 7 | 41 | 361 | 48 | 400 | 1.02e-39 | 146 |
| Msa0663950 | AT1G61990.2 | 28.052 | 385 | 226 | 6 | 27 | 371 | 32 | 405 | 1.30e-39 | 145 |
| Msa0663950 | AT1G61990.1 | 28.052 | 385 | 226 | 6 | 27 | 371 | 32 | 405 | 1.30e-39 | 145 |
| Msa0663950 | AT3G46950.1 | 32.226 | 301 | 188 | 6 | 14 | 309 | 18 | 307 | 9.06e-38 | 141 |
| Msa0663950 | AT5G23930.1 | 29.120 | 443 | 222 | 10 | 7 | 370 | 12 | 441 | 5.53e-36 | 137 |
| Msa0663950 | AT1G62010.1 | 29.282 | 362 | 192 | 9 | 42 | 361 | 45 | 384 | 6.18e-36 | 135 |
| Msa0663950 | AT1G62150.1 | 31.900 | 279 | 175 | 5 | 35 | 307 | 48 | 317 | 1.32e-33 | 130 |
| Msa0663950 | AT1G62085.1 | 32.248 | 307 | 185 | 8 | 14 | 307 | 18 | 314 | 1.78e-32 | 127 |
| Msa0663950 | AT1G62085.2 | 32.248 | 307 | 185 | 8 | 14 | 307 | 18 | 314 | 1.78e-32 | 127 |
| Msa0663950 | AT1G61960.1 | 33.577 | 274 | 173 | 6 | 27 | 296 | 32 | 300 | 1.47e-31 | 124 |
| Msa0663950 | AT1G62110.1 | 31.633 | 294 | 174 | 7 | 27 | 307 | 32 | 311 | 3.70e-31 | 123 |
| Msa0663950 | AT5G64950.1 | 29.221 | 308 | 207 | 5 | 77 | 375 | 71 | 376 | 1.16e-30 | 121 |
| Msa0663950 | AT1G56380.1 | 23.161 | 367 | 231 | 11 | 39 | 361 | 10 | 369 | 2.14e-18 | 86.3 |
| Msa0663950 | AT1G56380.2 | 23.161 | 367 | 231 | 11 | 39 | 361 | 21 | 380 | 2.72e-18 | 86.3 |
| Msa0663950 | AT1G62490.1 | 27.341 | 267 | 150 | 7 | 30 | 296 | 83 | 305 | 2.66e-15 | 76.6 |
Find 66 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACCTTGTTGAAAGTTTA+AGG | 0.085452 | 4_4:-2874431 | None:intergenic |
| GAAAGATTTGCCATTGTTAT+TGG | 0.156741 | 4_4:+2875337 | Msa0663950:CDS |
| CTTGTCACCAATCAAGATTT+TGG | 0.169173 | 4_4:-2874637 | None:intergenic |
| TAAGTATGGACAAAGAAATT+TGG | 0.197332 | 4_4:+2874985 | Msa0663950:CDS |
| TATGAAAACAATGGACTTCT+TGG | 0.234883 | 4_4:+2875112 | Msa0663950:CDS |
| GAATGCTACACAAGGAAAAT+TGG | 0.258902 | 4_4:-2874865 | None:intergenic |
| CCTAGTTTGCGATGATAAAA+AGG | 0.296431 | 4_4:+2874716 | Msa0663950:CDS |
| TTCCTCACTTGTCATAATAA+AGG | 0.304109 | 4_4:-2875282 | None:intergenic |
| AAAGAACAGTAGTTGAATAA+AGG | 0.305931 | 4_4:-2874290 | None:intergenic |
| AATGGCAAATCTTTCTGAAA+TGG | 0.311445 | 4_4:-2875329 | None:intergenic |
| AAAAGCTGAATAACAGCATT+TGG | 0.312391 | 4_4:-2874474 | None:intergenic |
| ATAACAGCATTTGGGCCATT+AGG | 0.321633 | 4_4:-2874465 | None:intergenic |
| ACAGCAGAGAAAAGTGAAAA+AGG | 0.329234 | 4_4:-2874327 | None:intergenic |
| AAGTATGGACAAAGAAATTT+GGG | 0.343578 | 4_4:+2874986 | Msa0663950:CDS |
| GATTTCCCCAAAATCTTGAT+TGG | 0.348520 | 4_4:+2874630 | Msa0663950:CDS |
| TCAAAGTTCTATTTCCAGTT+TGG | 0.350471 | 4_4:+2874839 | Msa0663950:CDS |
| TAACAGCATTTGGGCCATTA+GGG | 0.351944 | 4_4:-2874464 | None:intergenic |
| GGGCATGTAGCAATGTCTTC+TGG | 0.354285 | 4_4:-2875155 | None:intergenic |
| TCACATACTCAGGATACTTT+AGG | 0.366731 | 4_4:-2875070 | None:intergenic |
| ATGGCAAATCTTTCTGAAAT+GGG | 0.369413 | 4_4:-2875328 | None:intergenic |
| GTTAATTCAGTAAAAGAAAT+GGG | 0.374535 | 4_4:+2874915 | Msa0663950:CDS |
| CAACCTTGTTGAAAGTTTAA+GGG | 0.375048 | 4_4:-2874430 | None:intergenic |
| ATCTTGATAACAGCACATTT+AGG | 0.385800 | 4_4:-2875215 | None:intergenic |
| AGGAAAATTGGATACCAAAC+TGG | 0.392789 | 4_4:-2874853 | None:intergenic |
| CGTTAATTCAGTAAAAGAAA+TGG | 0.418583 | 4_4:+2874914 | Msa0663950:CDS |
| ACAACCCACATGAGTTTATG+AGG | 0.423242 | 4_4:-2874395 | None:intergenic |
| AAGTGTCTTCTCCAAGTTGC+GGG | 0.424163 | 4_4:-2875189 | None:intergenic |
| AAGAACAGTAGTTGAATAAA+GGG | 0.427774 | 4_4:-2874289 | None:intergenic |
| TCCAACACAAATCAACATAA+AGG | 0.430035 | 4_4:+2874351 | Msa0663950:CDS |
| TAGCTTTGAGGCGTGGATCA+TGG | 0.435733 | 4_4:+2874745 | Msa0663950:CDS |
| GATTCGAGTAATTGTAAGTA+TGG | 0.436929 | 4_4:+2874971 | Msa0663950:CDS |
| TTCCTCAAAACCTCAATGTT+CGG | 0.445259 | 4_4:-2874804 | None:intergenic |
| AAAAGGTAGTTCTAGCTTTG+AGG | 0.445792 | 4_4:+2874733 | Msa0663950:CDS |
| ACCTTTATGTTGATTTGTGT+TGG | 0.460913 | 4_4:-2874352 | None:intergenic |
| AAGTTGCGGGTCAGAATCCC+AGG | 0.461038 | 4_4:-2875176 | None:intergenic |
| CTCAACAAATCTAGAATGCT+TGG | 0.465273 | 4_4:-2874889 | None:intergenic |
| AAAGCTGAATAACAGCATTT+GGG | 0.472696 | 4_4:-2874473 | None:intergenic |
| TCAAGAGGTTTAATAAAGAG+TGG | 0.472917 | 4_4:+2875245 | Msa0663950:CDS |
| GAAGACATTGCTACATGCCC+TGG | 0.473610 | 4_4:+2875158 | Msa0663950:CDS |
| CAAAAGGGTGTTTCTTAACA+AGG | 0.481935 | 4_4:-2874533 | None:intergenic |
| TTGCAACTCATAAACCCTAA+TGG | 0.484587 | 4_4:+2874450 | Msa0663950:CDS |
| GGACTTCTTGGTGAAGGATG+TGG | 0.492155 | 4_4:+2875124 | Msa0663950:CDS |
| TATGAGGTTTGACAATGTAA+AGG | 0.499828 | 4_4:-2874379 | None:intergenic |
| TGGGATTCTGACCCGCAACT+TGG | 0.503137 | 4_4:+2875178 | Msa0663950:CDS |
| ATCAATGGTTGAAGCCCCAA+TGG | 0.538102 | 4_4:-2874610 | None:intergenic |
| GACTTCTTGGTGAAGGATGT+GGG | 0.555487 | 4_4:+2875125 | Msa0663950:CDS |
| CAAGCATTCTAGATTTGTTG+AGG | 0.558555 | 4_4:+2874890 | Msa0663950:CDS |
| GCAATGAGAAAATGATACAT+TGG | 0.568531 | 4_4:-2874243 | None:intergenic |
| AAAACAAAATACAACTTCGA+AGG | 0.568698 | 4_4:-2874945 | None:intergenic |
| TCTGAGATCATCACATACTC+AGG | 0.569253 | 4_4:-2875080 | None:intergenic |
| TGATTCTGTTCCGAACATTG+AGG | 0.570760 | 4_4:+2874794 | Msa0663950:CDS |
| TCAAACCTCATAAACTCATG+TGG | 0.578097 | 4_4:+2874390 | Msa0663950:CDS |
| GTAGTTCTAGCTTTGAGGCG+TGG | 0.585169 | 4_4:+2874738 | Msa0663950:CDS |
| AACAATGGACTTCTTGGTGA+AGG | 0.587900 | 4_4:+2875118 | Msa0663950:CDS |
| AAGACATTGCTACATGCCCT+GGG | 0.601471 | 4_4:+2875159 | Msa0663950:CDS |
| CAAGTGTCTTCTCCAAGTTG+CGG | 0.602943 | 4_4:-2875190 | None:intergenic |
| AAACTGGAAATAGAACTTTG+AGG | 0.609479 | 4_4:-2874837 | None:intergenic |
| TACCTTTATTATGACAAGTG+AGG | 0.612836 | 4_4:+2875280 | Msa0663950:CDS |
| TGGCAAATCTTTCTGAAATG+GGG | 0.627523 | 4_4:-2875327 | None:intergenic |
| TTATATGCATCCAATAACAA+TGG | 0.629215 | 4_4:-2875347 | None:intergenic |
| TTAATTCAGTAAAAGAAATG+GGG | 0.635626 | 4_4:+2874916 | Msa0663950:CDS |
| CGGAACAGAATCATTAACCA+TGG | 0.638798 | 4_4:-2874784 | None:intergenic |
| CAAACCTCATAAACTCATGT+GGG | 0.639091 | 4_4:+2874391 | Msa0663950:CDS |
| AAGCCCTTAAACTTTCAACA+AGG | 0.642886 | 4_4:+2874427 | Msa0663950:CDS |
| TGCTTGGTGAATGCTACACA+AGG | 0.683625 | 4_4:-2874873 | None:intergenic |
| AGTTGCGGGTCAGAATCCCA+GGG | 0.702455 | 4_4:-2875175 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_4:2874551-2874570 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_4:2875103-2875122 | Msa0663950:CDS | 15.0% |
| !!! | ATTTTGATAAAAGTACAAAA+GGG | - | chr4_4:2874551-2874570 | None:intergenic | 15.0% |
| !! | GAAAAAAATTATGAAAACAA+TGG | + | chr4_4:2875103-2875122 | Msa0663950:CDS | 15.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_4:2874552-2874571 | None:intergenic | 20.0% |
| !!! | CATTTCTTTTACTGAATTAA+CGG | - | chr4_4:2874916-2874935 | None:intergenic | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_4:2874915-2874934 | Msa0663950:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_4:2874916-2874935 | Msa0663950:CDS | 20.0% |
| !!! | GATTTTGATAAAAGTACAAA+AGG | - | chr4_4:2874552-2874571 | None:intergenic | 20.0% |
| !!! | CATTTCTTTTACTGAATTAA+CGG | - | chr4_4:2874916-2874935 | None:intergenic | 20.0% |
| !! | GTTAATTCAGTAAAAGAAAT+GGG | + | chr4_4:2874915-2874934 | Msa0663950:CDS | 20.0% |
| !! | TTAATTCAGTAAAAGAAATG+GGG | + | chr4_4:2874916-2874935 | Msa0663950:CDS | 20.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_4:2874292-2874311 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_4:2874293-2874312 | None:intergenic | 25.0% |
| ! | CGTTAATTCAGTAAAAGAAA+TGG | + | chr4_4:2874914-2874933 | Msa0663950:CDS | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_4:2874948-2874967 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_4:2874947-2874966 | Msa0663950:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_4:2874985-2875004 | Msa0663950:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_4:2874986-2875005 | Msa0663950:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_4:2875012-2875031 | Msa0663950:CDS | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_4:2875350-2875369 | None:intergenic | 25.0% |
| ! | AAGAACAGTAGTTGAATAAA+GGG | - | chr4_4:2874292-2874311 | None:intergenic | 25.0% |
| ! | AAAGAACAGTAGTTGAATAA+AGG | - | chr4_4:2874293-2874312 | None:intergenic | 25.0% |
| ! | CGTTAATTCAGTAAAAGAAA+TGG | + | chr4_4:2874914-2874933 | Msa0663950:CDS | 25.0% |
| ! | AAAACAAAATACAACTTCGA+AGG | - | chr4_4:2874948-2874967 | None:intergenic | 25.0% |
| !!! | TTCGAAGTTGTATTTTGTTT+TGG | + | chr4_4:2874947-2874966 | Msa0663950:CDS | 25.0% |
| ! | TAAGTATGGACAAAGAAATT+TGG | + | chr4_4:2874985-2875004 | Msa0663950:CDS | 25.0% |
| ! | AAGTATGGACAAAGAAATTT+GGG | + | chr4_4:2874986-2875005 | Msa0663950:CDS | 25.0% |
| !!! | CAAAATTTAAGATTTTCGAG+AGG | + | chr4_4:2875012-2875031 | Msa0663950:CDS | 25.0% |
| ! | TTATATGCATCCAATAACAA+TGG | - | chr4_4:2875350-2875369 | None:intergenic | 25.0% |
| TCCAACACAAATCAACATAA+AGG | + | chr4_4:2874351-2874370 | Msa0663950:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_4:2874355-2874374 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_4:2874382-2874401 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_4:2874433-2874452 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_4:2874476-2874495 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_4:2874477-2874496 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_4:2874583-2874602 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_4:2874584-2874603 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_4:2874591-2874610 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_4:2874595-2874614 | Msa0663950:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_4:2874639-2874658 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_4:2874696-2874715 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_4:2874767-2874786 | Msa0663950:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_4:2874840-2874859 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_4:2874839-2874858 | Msa0663950:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_4:2874971-2874990 | Msa0663950:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_4:2875015-2875034 | Msa0663950:CDS | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_4:2875016-2875035 | Msa0663950:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_4:2875112-2875131 | Msa0663950:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_4:2875218-2875237 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_4:2875230-2875249 | Msa0663950:CDS | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_4:2875245-2875264 | Msa0663950:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_4:2875280-2875299 | Msa0663950:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_4:2875285-2875304 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_4:2875331-2875350 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_4:2875332-2875351 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_4:2875337-2875356 | Msa0663950:CDS | 30.0% | |
| TCCAACACAAATCAACATAA+AGG | + | chr4_4:2874351-2874370 | Msa0663950:CDS | 30.0% | |
| !! | ACCTTTATGTTGATTTGTGT+TGG | - | chr4_4:2874355-2874374 | None:intergenic | 30.0% |
| TATGAGGTTTGACAATGTAA+AGG | - | chr4_4:2874382-2874401 | None:intergenic | 30.0% | |
| CAACCTTGTTGAAAGTTTAA+GGG | - | chr4_4:2874433-2874452 | None:intergenic | 30.0% | |
| AAAGCTGAATAACAGCATTT+GGG | - | chr4_4:2874476-2874495 | None:intergenic | 30.0% | |
| AAAAGCTGAATAACAGCATT+TGG | - | chr4_4:2874477-2874496 | None:intergenic | 30.0% | |
| !! | AAACTTGAGTTTTGGCAAAA+GGG | - | chr4_4:2874583-2874602 | None:intergenic | 30.0% |
| !! | AAAACTTGAGTTTTGGCAAA+AGG | - | chr4_4:2874584-2874603 | None:intergenic | 30.0% |
| ! | GATTGCAAAAACTTGAGTTT+TGG | - | chr4_4:2874591-2874610 | None:intergenic | 30.0% |
| ! | TCAAGTTTTTGCAATCCATT+GGG | + | chr4_4:2874595-2874614 | Msa0663950:CDS | 30.0% |
| ! | TTGTCACCAATCAAGATTTT+GGG | - | chr4_4:2874639-2874658 | None:intergenic | 30.0% |
| !! | CTTTTAAGAATCTTGTAACG+AGG | - | chr4_4:2874696-2874715 | None:intergenic | 30.0% |
| ! | GAACTTTTACAATGATTCCA+TGG | + | chr4_4:2874767-2874786 | Msa0663950:CDS | 30.0% |
| AAACTGGAAATAGAACTTTG+AGG | - | chr4_4:2874840-2874859 | None:intergenic | 30.0% | |
| TCAAAGTTCTATTTCCAGTT+TGG | + | chr4_4:2874839-2874858 | Msa0663950:CDS | 30.0% | |
| GATTCGAGTAATTGTAAGTA+TGG | + | chr4_4:2874971-2874990 | Msa0663950:CDS | 30.0% | |
| !! | AATTTAAGATTTTCGAGAGG+TGG | + | chr4_4:2875015-2875034 | Msa0663950:CDS | 30.0% |
| !! | ATTTAAGATTTTCGAGAGGT+GGG | + | chr4_4:2875016-2875035 | Msa0663950:CDS | 30.0% |
| ! | TATGAAAACAATGGACTTCT+TGG | + | chr4_4:2875112-2875131 | Msa0663950:CDS | 30.0% |
| ! | ATCTTGATAACAGCACATTT+AGG | - | chr4_4:2875218-2875237 | None:intergenic | 30.0% |
| !!! | ATCAAGATTTTGAAGTCAAG+AGG | + | chr4_4:2875230-2875249 | Msa0663950:CDS | 30.0% |
| TCAAGAGGTTTAATAAAGAG+TGG | + | chr4_4:2875245-2875264 | Msa0663950:CDS | 30.0% | |
| TACCTTTATTATGACAAGTG+AGG | + | chr4_4:2875280-2875299 | Msa0663950:CDS | 30.0% | |
| TTCCTCACTTGTCATAATAA+AGG | - | chr4_4:2875285-2875304 | None:intergenic | 30.0% | |
| !! | ATGGCAAATCTTTCTGAAAT+GGG | - | chr4_4:2875331-2875350 | None:intergenic | 30.0% |
| ! | AATGGCAAATCTTTCTGAAA+TGG | - | chr4_4:2875332-2875351 | None:intergenic | 30.0% |
| GAAAGATTTGCCATTGTTAT+TGG | + | chr4_4:2875337-2875356 | Msa0663950:CDS | 30.0% | |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_4:2874330-2874349 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_4:2874390-2874409 | Msa0663950:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_4:2874391-2874410 | Msa0663950:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_4:2874423-2874442 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_4:2874427-2874446 | Msa0663950:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_4:2874434-2874453 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_4:2874450-2874469 | Msa0663950:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_4:2874486-2874505 | Msa0663950:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_4:2874536-2874555 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_4:2874594-2874613 | Msa0663950:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_4:2874596-2874615 | Msa0663950:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_4:2874628-2874647 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_4:2874630-2874649 | Msa0663950:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_4:2874638-2874657 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_4:2874640-2874659 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_4:2874719-2874738 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_4:2874716-2874735 | Msa0663950:CDS | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_4:2874733-2874752 | Msa0663950:CDS | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_4:2874807-2874826 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_4:2874856-2874875 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_4:2874868-2874887 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_4:2874892-2874911 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_4:2874890-2874909 | Msa0663950:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_4:2875017-2875036 | Msa0663950:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_4:2875073-2875092 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_4:2875330-2875349 | None:intergenic | 35.0% |
| ACAGCAGAGAAAAGTGAAAA+AGG | - | chr4_4:2874330-2874349 | None:intergenic | 35.0% | |
| TCAAACCTCATAAACTCATG+TGG | + | chr4_4:2874390-2874409 | Msa0663950:CDS | 35.0% | |
| CAAACCTCATAAACTCATGT+GGG | + | chr4_4:2874391-2874410 | Msa0663950:CDS | 35.0% | |
| !! | GAAAGTTTAAGGGCTTTTTC+AGG | - | chr4_4:2874423-2874442 | None:intergenic | 35.0% |
| AAGCCCTTAAACTTTCAACA+AGG | + | chr4_4:2874427-2874446 | Msa0663950:CDS | 35.0% | |
| GCAACCTTGTTGAAAGTTTA+AGG | - | chr4_4:2874434-2874453 | None:intergenic | 35.0% | |
| TTGCAACTCATAAACCCTAA+TGG | + | chr4_4:2874450-2874469 | Msa0663950:CDS | 35.0% | |
| ! | ATTCAGCTTTTCAGAAGCTA+TGG | + | chr4_4:2874486-2874505 | Msa0663950:CDS | 35.0% |
| !! | CAAAAGGGTGTTTCTTAACA+AGG | - | chr4_4:2874536-2874555 | None:intergenic | 35.0% |
| ! | CTCAAGTTTTTGCAATCCAT+TGG | + | chr4_4:2874594-2874613 | Msa0663950:CDS | 35.0% |
| ! | CAAGTTTTTGCAATCCATTG+GGG | + | chr4_4:2874596-2874615 | Msa0663950:CDS | 35.0% |
| !! | CAAGATTTTGGGGAAATCAA+TGG | - | chr4_4:2874628-2874647 | None:intergenic | 35.0% |
| GATTTCCCCAAAATCTTGAT+TGG | + | chr4_4:2874630-2874649 | Msa0663950:CDS | 35.0% | |
| ! | TGTCACCAATCAAGATTTTG+GGG | - | chr4_4:2874638-2874657 | None:intergenic | 35.0% |
| ! | CTTGTCACCAATCAAGATTT+TGG | - | chr4_4:2874640-2874659 | None:intergenic | 35.0% |
| ! | CCTTTTTATCATCGCAAACT+AGG | - | chr4_4:2874719-2874738 | None:intergenic | 35.0% |
| ! | CCTAGTTTGCGATGATAAAA+AGG | + | chr4_4:2874716-2874735 | Msa0663950:CDS | 35.0% |
| !! | AAAAGGTAGTTCTAGCTTTG+AGG | + | chr4_4:2874733-2874752 | Msa0663950:CDS | 35.0% |
| TTCCTCAAAACCTCAATGTT+CGG | - | chr4_4:2874807-2874826 | None:intergenic | 35.0% | |
| AGGAAAATTGGATACCAAAC+TGG | - | chr4_4:2874856-2874875 | None:intergenic | 35.0% | |
| GAATGCTACACAAGGAAAAT+TGG | - | chr4_4:2874868-2874887 | None:intergenic | 35.0% | |
| ! | CTCAACAAATCTAGAATGCT+TGG | - | chr4_4:2874892-2874911 | None:intergenic | 35.0% |
| !! | CAAGCATTCTAGATTTGTTG+AGG | + | chr4_4:2874890-2874909 | Msa0663950:CDS | 35.0% |
| !! | TTTAAGATTTTCGAGAGGTG+GGG | + | chr4_4:2875017-2875036 | Msa0663950:CDS | 35.0% |
| TCACATACTCAGGATACTTT+AGG | - | chr4_4:2875073-2875092 | None:intergenic | 35.0% | |
| !! | TGGCAAATCTTTCTGAAATG+GGG | - | chr4_4:2875330-2875349 | None:intergenic | 35.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_4:2874398-2874417 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_4:2874467-2874486 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_4:2874468-2874487 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_4:2874656-2874675 | Msa0663950:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_4:2874787-2874806 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_4:2874794-2874813 | Msa0663950:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_4:2874802-2874821 | Msa0663950:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_4:2874810-2874829 | Msa0663950:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_4:2875083-2875102 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_4:2875118-2875137 | Msa0663950:CDS | 40.0% |
| ACAACCCACATGAGTTTATG+AGG | - | chr4_4:2874398-2874417 | None:intergenic | 40.0% | |
| TAACAGCATTTGGGCCATTA+GGG | - | chr4_4:2874467-2874486 | None:intergenic | 40.0% | |
| ATAACAGCATTTGGGCCATT+AGG | - | chr4_4:2874468-2874487 | None:intergenic | 40.0% | |
| ! | CAAGTTTTTGACAGCAAGCT+TGG | + | chr4_4:2874656-2874675 | Msa0663950:CDS | 40.0% |
| CGGAACAGAATCATTAACCA+TGG | - | chr4_4:2874787-2874806 | None:intergenic | 40.0% | |
| TGATTCTGTTCCGAACATTG+AGG | + | chr4_4:2874794-2874813 | Msa0663950:CDS | 40.0% | |
| ! | TTCCGAACATTGAGGTTTTG+AGG | + | chr4_4:2874802-2874821 | Msa0663950:CDS | 40.0% |
| !!! | ATTGAGGTTTTGAGGAAGCT+TGG | + | chr4_4:2874810-2874829 | Msa0663950:CDS | 40.0% |
| ! | TCTGAGATCATCACATACTC+AGG | - | chr4_4:2875083-2875102 | None:intergenic | 40.0% |
| ! | AACAATGGACTTCTTGGTGA+AGG | + | chr4_4:2875118-2875137 | Msa0663950:CDS | 40.0% |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_4:2874613-2874632 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_4:2874876-2874895 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_4:2875125-2875144 | Msa0663950:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_4:2875159-2875178 | Msa0663950:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_4:2875192-2875211 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_4:2875193-2875212 | None:intergenic | 45.0% | |
| ATCAATGGTTGAAGCCCCAA+TGG | - | chr4_4:2874613-2874632 | None:intergenic | 45.0% | |
| ! | TGCTTGGTGAATGCTACACA+AGG | - | chr4_4:2874876-2874895 | None:intergenic | 45.0% |
| GACTTCTTGGTGAAGGATGT+GGG | + | chr4_4:2875125-2875144 | Msa0663950:CDS | 45.0% | |
| AAGACATTGCTACATGCCCT+GGG | + | chr4_4:2875159-2875178 | Msa0663950:CDS | 45.0% | |
| AAGTGTCTTCTCCAAGTTGC+GGG | - | chr4_4:2875192-2875211 | None:intergenic | 45.0% | |
| CAAGTGTCTTCTCCAAGTTG+CGG | - | chr4_4:2875193-2875212 | None:intergenic | 45.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_4:2874738-2874757 | Msa0663950:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_4:2874745-2874764 | Msa0663950:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_4:2875124-2875143 | Msa0663950:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_4:2875158-2875177 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_4:2875158-2875177 | Msa0663950:CDS | 50.0% | |
| !! | GTAGTTCTAGCTTTGAGGCG+TGG | + | chr4_4:2874738-2874757 | Msa0663950:CDS | 50.0% |
| !! | TAGCTTTGAGGCGTGGATCA+TGG | + | chr4_4:2874745-2874764 | Msa0663950:CDS | 50.0% |
| GGACTTCTTGGTGAAGGATG+TGG | + | chr4_4:2875124-2875143 | Msa0663950:CDS | 50.0% | |
| GGGCATGTAGCAATGTCTTC+TGG | - | chr4_4:2875158-2875177 | None:intergenic | 50.0% | |
| GAAGACATTGCTACATGCCC+TGG | + | chr4_4:2875158-2875177 | Msa0663950:CDS | 50.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_4:2875021-2875040 | Msa0663950:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_4:2875178-2875197 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_4:2875179-2875198 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_4:2875178-2875197 | Msa0663950:CDS | 55.0% | |
| !! | AGATTTTCGAGAGGTGGGGC+TGG | + | chr4_4:2875021-2875040 | Msa0663950:CDS | 55.0% |
| AGTTGCGGGTCAGAATCCCA+GGG | - | chr4_4:2875178-2875197 | None:intergenic | 55.0% | |
| AAGTTGCGGGTCAGAATCCC+AGG | - | chr4_4:2875179-2875198 | None:intergenic | 55.0% | |
| TGGGATTCTGACCCGCAACT+TGG | + | chr4_4:2875178-2875197 | Msa0663950:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2874246 | 2875388 | 2874246 | ID=Msa0663950;Name=Msa0663950 |
| chr4_4 | mRNA | 2874246 | 2875388 | 2874246 | ID=Msa0663950-mRNA-1;Parent=Msa0663950;Name=Msa0663950-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|380 |
| chr4_4 | exon | 2874246 | 2875388 | 2874246 | ID=Msa0663950-mRNA-1:exon:819;Parent=Msa0663950-mRNA-1 |
| chr4_4 | CDS | 2874246 | 2875388 | 2874246 | ID=Msa0663950-mRNA-1:cds;Parent=Msa0663950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
