Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626120 | XP_013454536.1 | 52.410 | 166 | 40 | 3 | 5 | 140 | 3 | 159 | 4.99e-20 | 90.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0536170 | Msa0626120 | 0.903658 | 2.763628e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626120 | MtrunA17_Chr4g0001911 | 52.410 | 166 | 40 | 3 | 5 | 140 | 3 | 159 | 4.59e-24 | 90.9 |
| Msa0626120 | MtrunA17_Chr4g0001961 | 88.889 | 27 | 3 | 0 | 114 | 140 | 109 | 135 | 3.42e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACTAAATATATATTT+TGG | 0.183140 | 4_3:-5496943 | Msa0626120:three_prime_UTR |
| GGAGGAGGTGGAAGGGGAGG+AGG | 0.294260 | 4_3:-5497362 | Msa0626120:CDS |
| GGAGGTGGAAGGGGAGGAGG+TGG | 0.304793 | 4_3:-5497359 | Msa0626120:CDS |
| GGTGGAGGAAAGGGAGGAGG+TGG | 0.314138 | 4_3:-5497251 | Msa0626120:intron |
| GCCTTCATCTTCATTTGAAA+TGG | 0.326206 | 4_3:+5497969 | None:intergenic |
| AGGGGAGGAGGTGGATTTAG+TGG | 0.341806 | 4_3:-5497350 | Msa0626120:CDS |
| GGAGGAGGTGGAGGAAAGGG+AGG | 0.348606 | 4_3:-5497257 | Msa0626120:intron |
| GGAAAGGGAGGAGGTGGAAT+GGG | 0.349740 | 4_3:-5497245 | Msa0626120:CDS |
| AAGGGAGGAGGTGGAATGGG+AGG | 0.356510 | 4_3:-5497242 | Msa0626120:CDS |
| GAACAAGCACATGAGGTTAA+TGG | 0.363274 | 4_3:-5497925 | Msa0626120:intron |
| GGAGGTGGAGGAAAGGGAGG+AGG | 0.378637 | 4_3:-5497254 | Msa0626120:intron |
| GGATTTGGAGGAGGAGTGGC+AGG | 0.379627 | 4_3:-5497209 | Msa0626120:CDS |
| GGAGGAGGTGGAATGGGAGG+GGG | 0.398655 | 4_3:-5497239 | Msa0626120:CDS |
| TCGACGGGAGGAGGTGGAAG+GGG | 0.410147 | 4_3:-5497368 | Msa0626120:CDS |
| CATGTGCTTGTTCATTACTC+TGG | 0.410300 | 4_3:+5497935 | None:intergenic |
| GAGCATTTGAGATGATCAAT+AGG | 0.414061 | 4_3:+5497995 | None:intergenic |
| AGGAAAGGGAGGAGGTGGAA+TGG | 0.417507 | 4_3:-5497246 | Msa0626120:CDS |
| ACGGGAGGAGGTGGAAGGGG+AGG | 0.424441 | 4_3:-5497365 | Msa0626120:CDS |
| GGTGGGAAGGGATTTGGAGG+AGG | 0.425225 | 4_3:-5497218 | Msa0626120:CDS |
| GGGAGGAGGTGGAATGGGAG+GGG | 0.432996 | 4_3:-5497240 | Msa0626120:CDS |
| ATTGTCGGCGGTGGAATTGT+AGG | 0.459997 | 4_3:-5497170 | Msa0626120:CDS |
| GGAGCGGCCGGTGGAATTGT+CGG | 0.460747 | 4_3:-5497185 | Msa0626120:CDS |
| GCCGGTGGAATTGTCGGCGG+TGG | 0.467804 | 4_3:-5497179 | Msa0626120:CDS |
| CCCACCATTGTGACCGCGAT+TGG | 0.472850 | 4_3:+5497136 | None:intergenic |
| AGGGAGGAGGTGGAATGGGA+GGG | 0.484959 | 4_3:-5497241 | Msa0626120:CDS |
| GTGGCAGGTGGAGCGGCCGG+TGG | 0.496396 | 4_3:-5497194 | Msa0626120:CDS |
| GCCATTTCAAATGAAGATGA+AGG | 0.496545 | 4_3:-5497970 | Msa0626120:CDS |
| GGAGTGGCAGGTGGAGCGGC+CGG | 0.498879 | 4_3:-5497197 | Msa0626120:CDS |
| TTTCGACGGGAGGAGGTGGA+AGG | 0.517005 | 4_3:-5497370 | Msa0626120:CDS |
| AGGAGGAGTGGCAGGTGGAG+CGG | 0.523525 | 4_3:-5497201 | Msa0626120:CDS |
| GCCAATCGCGGTCACAATGG+TGG | 0.524910 | 4_3:-5497137 | Msa0626120:CDS |
| GAAGGGATTTGGAGGAGGAG+TGG | 0.528933 | 4_3:-5497213 | Msa0626120:CDS |
| TTCGACGGGAGGAGGTGGAA+GGG | 0.547737 | 4_3:-5497369 | Msa0626120:CDS |
| AGAAAACATGATATTAATTG+TGG | 0.566148 | 4_3:+5496920 | None:intergenic |
| GGCGGCGCAGTTGCCAATCG+CGG | 0.571389 | 4_3:-5497149 | Msa0626120:CDS |
| TTTGGAGGAGGAGTGGCAGG+TGG | 0.584933 | 4_3:-5497206 | Msa0626120:CDS |
| GTAGCAATAAAGACTAAGAG+AGG | 0.593919 | 4_3:+5496959 | None:intergenic |
| CCAATCGCGGTCACAATGGT+GGG | 0.596838 | 4_3:-5497136 | Msa0626120:CDS |
| TCCTCCCGTCGAAAACCTCA+TGG | 0.608672 | 4_3:+5497379 | None:intergenic |
| TCCACCGCCGACAATTCCAC+CGG | 0.614611 | 4_3:+5497178 | None:intergenic |
| GAGTAATGAACAAGCACATG+AGG | 0.616284 | 4_3:-5497932 | Msa0626120:CDS |
| GGAGGAGGTGGATTTAGTGG+AGG | 0.619290 | 4_3:-5497347 | Msa0626120:intron |
| GGTCACAATGGTGGGTACAA+TGG | 0.639906 | 4_3:-5497128 | Msa0626120:CDS |
| GTTGCCAATCGCGGTCACAA+TGG | 0.650629 | 4_3:-5497140 | Msa0626120:CDS |
| GTCGGCGGTGGAATTGTAGG+CGG | 0.660320 | 4_3:-5497167 | Msa0626120:CDS |
| GCGGCCGGTGGAATTGTCGG+CGG | 0.697053 | 4_3:-5497182 | Msa0626120:CDS |
| ATGAATTGTCTGTTGCCATG+AGG | 0.730410 | 4_3:-5497394 | Msa0626120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATTAATTTTATAA+AGG | - | chr4_3:5499100-5499119 | Msa0626120:intron | 0.0% |
| !! | AAATAAAAAATTAAATGAGT+TGG | - | chr4_3:5498009-5498028 | Msa0626120:CDS | 10.0% |
| !!! | AAATGATTATTGTATTTTTT+TGG | + | chr4_3:5499078-5499097 | None:intergenic | 10.0% |
| !!! | TATAAATATATATTTTTCCT+TGG | - | chr4_3:5499515-5499534 | Msa0626120:intron | 10.0% |
| !!! | TTTTTTAATTTAGAACTATA+GGG | + | chr4_3:5499750-5499769 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATTTAGAACTAT+AGG | + | chr4_3:5499751-5499770 | None:intergenic | 10.0% |
| !! | TTTGTATTTAAATTAGTTAA+GGG | + | chr4_3:5501217-5501236 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+AGG | + | chr4_3:5501383-5501402 | None:intergenic | 10.0% |
| !!! | TTTTGTATTTAAATTAGTTA+GGG | - | chr4_3:5501383-5501402 | Msa0626120:intron | 10.0% |
| !!! | TTACTTTTTCTGAAAAATAT+AGG | - | chr4_3:5497338-5497357 | Msa0626120:intron | 15.0% |
| !!! | TACTTTTTCTGAAAAATATA+GGG | - | chr4_3:5497339-5497358 | Msa0626120:intron | 15.0% |
| !!! | ATTTTTTATTTTTTTTGTGG+TGG | + | chr4_3:5498000-5498019 | None:intergenic | 15.0% |
| !!! | CACATGTTTATTTATTTTTT+TGG | - | chr4_3:5499185-5499204 | Msa0626120:intron | 15.0% |
| !!! | ACTCAATATCATATATATTT+TGG | + | chr4_3:5499309-5499328 | None:intergenic | 15.0% |
| !!! | ATACTCAATCTAAAATATTT+TGG | + | chr4_3:5499355-5499374 | None:intergenic | 15.0% |
| !!! | AAATATTTTAGAAAAACTTG+AGG | - | chr4_3:5499424-5499443 | Msa0626120:intron | 15.0% |
| !! | TTGTATTTAAATTAGTTAAG+GGG | + | chr4_3:5501216-5501235 | None:intergenic | 15.0% |
| !!! | GTTTTGTATTTAAATTAGTT+AGG | - | chr4_3:5501382-5501401 | Msa0626120:intron | 15.0% |
| !! | TTTGTATTTAAATTAGTTAG+GGG | - | chr4_3:5501384-5501403 | Msa0626120:intron | 15.0% |
| !! | TAAAACCAAGATTAAAATAA+AGG | + | chr4_3:5501459-5501478 | None:intergenic | 15.0% |
| !!! | TTGCTACTAAATATATATTT+TGG | - | chr4_3:5502042-5502061 | Msa0626120:intron | 15.0% |
| !!! | ATCTTCATTTTCATTTGATT+TGG | + | chr4_3:5496964-5496983 | None:intergenic | 20.0% |
| !!! | TGTGAAGTTTTAAATCTTAA+AGG | + | chr4_3:5497118-5497137 | None:intergenic | 20.0% |
| !!! | AAGTTGCTAAACATTATTTT+AGG | + | chr4_3:5497184-5497203 | None:intergenic | 20.0% |
| !!! | GAAAATTTTGAGTTTGTATT+AGG | - | chr4_3:5497212-5497231 | Msa0626120:CDS | 20.0% |
| !! | TAGTAAAAAAATTCAATCCA+AGG | - | chr4_3:5497274-5497293 | Msa0626120:intron | 20.0% |
| !!! | ATTTGCTCTAATTTTTCTAA+AGG | - | chr4_3:5497367-5497386 | Msa0626120:CDS | 20.0% |
| !!! | AATTCATTTTCATGGAATTT+GGG | + | chr4_3:5497418-5497437 | None:intergenic | 20.0% |
| !!! | TAATTCATTTTCATGGAATT+TGG | + | chr4_3:5497419-5497438 | None:intergenic | 20.0% |
| !!! | CTATGAATAATTCATTTTCA+TGG | + | chr4_3:5497426-5497445 | None:intergenic | 20.0% |
| !! | CAATTACTTCATTTCAAAAT+AGG | - | chr4_3:5497541-5497560 | Msa0626120:intron | 20.0% |
| !! | AATCATAACATGAATATTGA+TGG | - | chr4_3:5497621-5497640 | Msa0626120:intron | 20.0% |
| !! | AAAAGAAAGAAGAATATTGA+TGG | - | chr4_3:5497656-5497675 | Msa0626120:intron | 20.0% |
| !! | ACATAATTAAGTATGTTGAT+TGG | + | chr4_3:5497743-5497762 | None:intergenic | 20.0% |
| !! | ACAAATTAGATTAAATGAGT+TGG | - | chr4_3:5497906-5497925 | Msa0626120:intron | 20.0% |
| !!! | TAACATAACTTCTTTTTCAA+TGG | + | chr4_3:5498044-5498063 | None:intergenic | 20.0% |
| !!! | ACTTTTGTTTTAACAAAATG+CGG | + | chr4_3:5498101-5498120 | None:intergenic | 20.0% |
| !! | AACAACAACTCTAATAATAA+AGG | + | chr4_3:5498915-5498934 | None:intergenic | 20.0% |
| !! | TAAAGTGAATTATATGAATG+AGG | + | chr4_3:5499126-5499145 | None:intergenic | 20.0% |
| !! | TCATTCATATAATTCACTTT+AGG | - | chr4_3:5499125-5499144 | Msa0626120:intron | 20.0% |
| !!! | TATTTTTTTGGTGTTGATTT+TGG | - | chr4_3:5499197-5499216 | Msa0626120:intron | 20.0% |
| !!! | TTTTTGTACTAGATCTAATA+TGG | + | chr4_3:5499249-5499268 | None:intergenic | 20.0% |
| !!! | GAACACTATTAGAAATATTT+TGG | + | chr4_3:5499402-5499421 | None:intergenic | 20.0% |
| !!! | TGACATTTTTCTTTTTTCTT+TGG | + | chr4_3:5499889-5499908 | None:intergenic | 20.0% |
| !!! | TTTTTGTCATTAGAAGAAAA+TGG | + | chr4_3:5499959-5499978 | None:intergenic | 20.0% |
| !!! | ATATGATGAATTTAGAGTTA+TGG | - | chr4_3:5500160-5500179 | Msa0626120:intron | 20.0% |
| !!! | TGTTAAACTTTTTTGTGTAT+CGG | - | chr4_3:5500257-5500276 | Msa0626120:intron | 20.0% |
| !! | AGTCTGCAAAATTATATAAA+GGG | + | chr4_3:5500869-5500888 | None:intergenic | 20.0% |
| !! | AAAAATATTACCTTCATGTT+AGG | + | chr4_3:5500961-5500980 | None:intergenic | 20.0% |
| !!! | AAGTTTTTACTTGTTTGAAA+AGG | + | chr4_3:5501099-5501118 | None:intergenic | 20.0% |
| !! | TTGTATTTAAATTAGTTAGG+GGG | - | chr4_3:5501385-5501404 | Msa0626120:intron | 20.0% |
| !!! | TTAAGCCTTTATTTTAATCT+TGG | - | chr4_3:5501451-5501470 | Msa0626120:intron | 20.0% |
| !! | ACGATAATAGGAAATTTATA+TGG | - | chr4_3:5501494-5501513 | Msa0626120:intron | 20.0% |
| !! | ATAGGAAATTTATATGGAAA+TGG | - | chr4_3:5501500-5501519 | Msa0626120:intron | 20.0% |
| !! | AAAAATGAAACTAAACTAAG+TGG | + | chr4_3:5501984-5502003 | None:intergenic | 20.0% |
| !! | AGAAAACATGATATTAATTG+TGG | + | chr4_3:5502068-5502087 | None:intergenic | 20.0% |
| ! | TTGCTACAAACAAATATCTT+AGG | + | chr4_3:5497251-5497270 | None:intergenic | 25.0% |
| ! | GAAAAAGAAGTTATGTTAAG+TGG | - | chr4_3:5498046-5498065 | Msa0626120:intron | 25.0% |
| !! | TATGTTAAGTGGAATTTGTT+AGG | - | chr4_3:5498057-5498076 | Msa0626120:intron | 25.0% |
| ! | ATAACTTCAGAGAATCTTTA+GGG | + | chr4_3:5498209-5498228 | None:intergenic | 25.0% |
| ! | AATGAGTTTGATGCATAAAT+CGG | + | chr4_3:5498397-5498416 | None:intergenic | 25.0% |
| ! | CTCAACAGTTATAACATAAA+TGG | + | chr4_3:5498636-5498655 | None:intergenic | 25.0% |
| ! | AGTCTTAGATAGAAATTACA+CGG | - | chr4_3:5498712-5498731 | Msa0626120:intron | 25.0% |
| !!! | CATAATTGATTCTGAAATTC+TGG | + | chr4_3:5499022-5499041 | None:intergenic | 25.0% |
| ! | ATATGGAAATCCAAATACAA+CGG | + | chr4_3:5499232-5499251 | None:intergenic | 25.0% |
| ! | ATAATTATGTACCCCATTAA+AGG | - | chr4_3:5499555-5499574 | Msa0626120:intron | 25.0% |
| ! | TCTCATATTTAATAGATCAC+CGG | + | chr4_3:5499608-5499627 | None:intergenic | 25.0% |
| !!! | AACATTAGTTCTATCCAATA+TGG | - | chr4_3:5499650-5499669 | Msa0626120:intron | 25.0% |
| !!! | ACATTAGTTCTATCCAATAT+GGG | - | chr4_3:5499651-5499670 | Msa0626120:intron | 25.0% |
| ! | ATAAATACAATGTCCCATAT+TGG | + | chr4_3:5499667-5499686 | None:intergenic | 25.0% |
| !! | ATTTAGAACTATAGGGTTAT+CGG | + | chr4_3:5499743-5499762 | None:intergenic | 25.0% |
| ! | ATTCTACTATATACTAAACG+AGG | + | chr4_3:5500021-5500040 | None:intergenic | 25.0% |
| !!! | AAAAATGATTTTGATGTGAG+AGG | - | chr4_3:5500060-5500079 | Msa0626120:intron | 25.0% |
| ! | TTACTAAAAACAAAACCAAG+AGG | + | chr4_3:5500390-5500409 | None:intergenic | 25.0% |
| !! | CAATTGATAGGATATTGTTT+TGG | - | chr4_3:5500457-5500476 | Msa0626120:intron | 25.0% |
| !!! | AATTCTTAAAGAGTGTCTTA+AGG | + | chr4_3:5500500-5500519 | None:intergenic | 25.0% |
| ! | ACTCTAGCAAAAAATCAAAT+GGG | + | chr4_3:5500683-5500702 | None:intergenic | 25.0% |
| ! | TACTCTAGCAAAAAATCAAA+TGG | + | chr4_3:5500684-5500703 | None:intergenic | 25.0% |
| ! | TTAAAGTAGACAATGCAATT+TGG | + | chr4_3:5500708-5500727 | None:intergenic | 25.0% |
| ! | AGTGGATGAAAAATAGTTTA+GGG | + | chr4_3:5500833-5500852 | None:intergenic | 25.0% |
| ! | GAGTCTGCAAAATTATATAA+AGG | + | chr4_3:5500870-5500889 | None:intergenic | 25.0% |
| !! | TTATATAATTTTGCAGACTC+TGG | - | chr4_3:5500870-5500889 | Msa0626120:intron | 25.0% |
| ! | ATTATTTGCAAAGAATCCTT+AGG | - | chr4_3:5500935-5500954 | Msa0626120:intron | 25.0% |
| ! | TTTACTTGTTTGAAAAGGTA+AGG | + | chr4_3:5501094-5501113 | None:intergenic | 25.0% |
| !!! | AGCATACGTGTTTTTATTTT+AGG | - | chr4_3:5501142-5501161 | Msa0626120:intron | 25.0% |
| !!! | CATTTTTGGCAGTTTTTTTT+TGG | - | chr4_3:5501315-5501334 | Msa0626120:intron | 25.0% |
| !! | TTGTGTTATTCAACGATAAT+AGG | - | chr4_3:5501482-5501501 | Msa0626120:intron | 25.0% |
| GAACAAACTCATGAGATTAA+TGG | - | chr4_3:5497032-5497051 | Msa0626120:exon | 30.0% | |
| ATGTAAACAATACGTGCATT+TGG | + | chr4_3:5497795-5497814 | None:intergenic | 30.0% | |
| GACAAAGCATAATATATGCA+AGG | - | chr4_3:5497957-5497976 | Msa0626120:CDS | 30.0% | |
| AGCATAATATATGCAAGGTT+CGG | - | chr4_3:5497962-5497981 | Msa0626120:CDS | 30.0% | |
| !!! | TTTATTTTTTTTGTGGTGGC+CGG | + | chr4_3:5497996-5498015 | None:intergenic | 30.0% |
| CATAACTTCAGAGAATCTTT+AGG | + | chr4_3:5498210-5498229 | None:intergenic | 30.0% | |
| ! | TGGTTTCTAGAAGTAATGTT+AGG | - | chr4_3:5498260-5498279 | Msa0626120:intron | 30.0% |
| ! | TTTCTAGAAGTAATGTTAGG+CGG | - | chr4_3:5498263-5498282 | Msa0626120:intron | 30.0% |
| TCTTCAGAACAATATTCTGA+AGG | + | chr4_3:5498348-5498367 | None:intergenic | 30.0% | |
| ATGAGTTTGATGCATAAATC+GGG | + | chr4_3:5498396-5498415 | None:intergenic | 30.0% | |
| ATCAAACTCATTCTGCATTT+AGG | - | chr4_3:5498405-5498424 | Msa0626120:intron | 30.0% | |
| TCTGCATTTAGGCTATATAA+AGG | - | chr4_3:5498416-5498435 | Msa0626120:intron | 30.0% | |
| !!! | CATTCACAAAAGTGTCTTTT+AGG | - | chr4_3:5498472-5498491 | Msa0626120:intron | 30.0% |
| ATAACTGTTGAGTCAATCAT+TGG | - | chr4_3:5498644-5498663 | Msa0626120:intron | 30.0% | |
| TAACTGTTGAGTCAATCATT+GGG | - | chr4_3:5498645-5498664 | Msa0626120:intron | 30.0% | |
| GTCTTAGATAGAAATTACAC+GGG | - | chr4_3:5498713-5498732 | Msa0626120:intron | 30.0% | |
| ! | AGTTGTTTGTTAACCCAATT+CGG | + | chr4_3:5498874-5498893 | None:intergenic | 30.0% |
| TAATAAAGGCAGGAAGTAAA+AGG | + | chr4_3:5498901-5498920 | None:intergenic | 30.0% | |
| ACAACTCTAATAATAAAGGC+AGG | + | chr4_3:5498911-5498930 | None:intergenic | 30.0% | |
| ! | GATTTTCAAACCGTTGTATT+TGG | - | chr4_3:5499219-5499238 | Msa0626120:intron | 30.0% |
| TTCACTAATGTTCCAACATA+TGG | - | chr4_3:5499703-5499722 | Msa0626120:intron | 30.0% | |
| CAAACTTGATTTCCATATGT+TGG | + | chr4_3:5499718-5499737 | None:intergenic | 30.0% | |
| AGATGCATGAATATCATCAT+TGG | - | chr4_3:5499812-5499831 | Msa0626120:intron | 30.0% | |
| TTGATGTGAGAGGTTATTAA+TGG | - | chr4_3:5500070-5500089 | Msa0626120:intron | 30.0% | |
| !!! | GTTTTTAGTAAAAGACGCTT+CGG | - | chr4_3:5500399-5500418 | Msa0626120:intron | 30.0% |
| ATACCTCAATCTCAATTGAT+AGG | - | chr4_3:5500445-5500464 | Msa0626120:intron | 30.0% | |
| TATCCTATCAATTGAGATTG+AGG | + | chr4_3:5500451-5500470 | None:intergenic | 30.0% | |
| AATGCTAATGAGTGTCTAAA+GGG | + | chr4_3:5500658-5500677 | None:intergenic | 30.0% | |
| AAATGCTAATGAGTGTCTAA+AGG | + | chr4_3:5500659-5500678 | None:intergenic | 30.0% | |
| GAGTGGATGAAAAATAGTTT+AGG | + | chr4_3:5500834-5500853 | None:intergenic | 30.0% | |
| TGCCAAAGATTCAATACTTA+GGG | + | chr4_3:5501246-5501265 | None:intergenic | 30.0% | |
| ! | TATTGAATCTTTGGCAGTTT+TGG | - | chr4_3:5501250-5501269 | Msa0626120:intron | 30.0% |
| !!! | TATTGATTCTTTGGCAGTTT+TGG | + | chr4_3:5501351-5501370 | None:intergenic | 30.0% |
| TGCCAAAGAATCAATACTTA+GGG | - | chr4_3:5501355-5501374 | Msa0626120:intron | 30.0% | |
| !!! | ATTTTTGTTGTTCAACCTTG+TGG | + | chr4_3:5501540-5501559 | None:intergenic | 30.0% |
| GAACAACAAAAATGTGATTG+TGG | - | chr4_3:5501547-5501566 | Msa0626120:intron | 30.0% | |
| AATGTTGAGACACAAAAATG+AGG | + | chr4_3:5501917-5501936 | None:intergenic | 30.0% | |
| ! | TGATTTTATGTATGAGCTTC+TGG | - | chr4_3:5501936-5501955 | Msa0626120:intron | 30.0% |
| CAATATGAATTTCACTCCAG+TGG | - | chr4_3:5496986-5497005 | Msa0626120:three_prime_UTR | 35.0% | |
| TCGATTAAACTTCTTTCCAC+TGG | + | chr4_3:5497005-5497024 | None:intergenic | 35.0% | |
| TATCATGTCGATGTTGCTAT+AGG | - | chr4_3:5497298-5497317 | Msa0626120:intron | 35.0% | |
| GCATAATATATGCAAGGTTC+GGG | - | chr4_3:5497963-5497982 | Msa0626120:CDS | 35.0% | |
| CATAATATATGCAAGGTTCG+GGG | - | chr4_3:5497964-5497983 | Msa0626120:CDS | 35.0% | |
| !!! | TTATTTTTTTTGTGGTGGCC+GGG | + | chr4_3:5497995-5498014 | None:intergenic | 35.0% |
| ATATCCAAGAAAGCGAAACA+AGG | + | chr4_3:5498167-5498186 | None:intergenic | 35.0% | |
| TTTGTGAATGACGATTTCAG+TGG | + | chr4_3:5498462-5498481 | None:intergenic | 35.0% | |
| TGTCACGTTGATATTAGAGT+TGG | - | chr4_3:5498532-5498551 | Msa0626120:intron | 35.0% | |
| ATAAATGGAGACACACTCTT+AGG | + | chr4_3:5498621-5498640 | None:intergenic | 35.0% | |
| AAATTACACGGGTAGTGATT+AGG | - | chr4_3:5498724-5498743 | Msa0626120:intron | 35.0% | |
| AGTGAAATTTCTTCCTGACT+TGG | - | chr4_3:5498804-5498823 | Msa0626120:intron | 35.0% | |
| CACACATTAGTATATAGTGG+GGG | + | chr4_3:5499584-5499603 | None:intergenic | 35.0% | |
| CCACACATTAGTATATAGTG+GGG | + | chr4_3:5499585-5499604 | None:intergenic | 35.0% | |
| GCCACACATTAGTATATAGT+GGG | + | chr4_3:5499586-5499605 | None:intergenic | 35.0% | |
| ACTATATACTAATGTGTGGC+CGG | - | chr4_3:5499586-5499605 | Msa0626120:intron | 35.0% | |
| ! | CATTGGCTATTGTTGAAACT+TGG | - | chr4_3:5499829-5499848 | Msa0626120:intron | 35.0% |
| !!! | AAATGTCATTTTCTGTGCTG+AGG | - | chr4_3:5499901-5499920 | Msa0626120:intron | 35.0% |
| GAAATAAGTCATTCCAGCTT+AGG | + | chr4_3:5499937-5499956 | None:intergenic | 35.0% | |
| AGCGAGATAGGTTATTAAGT+CGG | - | chr4_3:5500104-5500123 | Msa0626120:intron | 35.0% | |
| TAATATGGACCCCTAAAAAC+TGG | + | chr4_3:5500769-5500788 | None:intergenic | 35.0% | |
| ! | TGGGGGCATATAATGTAATA+TGG | + | chr4_3:5500784-5500803 | None:intergenic | 35.0% |
| AGCCTCAAATATGGAATAGT+GGG | + | chr4_3:5500803-5500822 | None:intergenic | 35.0% | |
| AAGCCTCAAATATGGAATAG+TGG | + | chr4_3:5500804-5500823 | None:intergenic | 35.0% | |
| GGAAACAAAAGCCTCAAATA+TGG | + | chr4_3:5500812-5500831 | None:intergenic | 35.0% | |
| ! | GAGCATTTGAGATGATCAAT+AGG | + | chr4_3:5500993-5501012 | None:intergenic | 35.0% |
| GCCATTTCAAATGAAGATGA+AGG | - | chr4_3:5501015-5501034 | Msa0626120:intron | 35.0% | |
| GCCTTCATCTTCATTTGAAA+TGG | + | chr4_3:5501019-5501038 | None:intergenic | 35.0% | |
| CCAAAGATTCAATACTTAGG+GGG | + | chr4_3:5501244-5501263 | None:intergenic | 35.0% | |
| GCCAAAGATTCAATACTTAG+GGG | + | chr4_3:5501245-5501264 | None:intergenic | 35.0% | |
| CTGCCAAAGATTCAATACTT+AGG | + | chr4_3:5501247-5501266 | None:intergenic | 35.0% | |
| CTGCCAAAGAATCAATACTT+AGG | - | chr4_3:5501354-5501373 | Msa0626120:intron | 35.0% | |
| GCCAAAGAATCAATACTTAG+GGG | - | chr4_3:5501356-5501375 | Msa0626120:intron | 35.0% | |
| CCAAAGAATCAATACTTAGG+GGG | - | chr4_3:5501357-5501376 | Msa0626120:intron | 35.0% | |
| GTAGCAATAAAGACTAAGAG+AGG | + | chr4_3:5502029-5502048 | None:intergenic | 35.0% | |
| CAACATCGACATGATATCCT+TGG | + | chr4_3:5497294-5497313 | None:intergenic | 40.0% | |
| CGATGTTGCTATAGGACAAT+TGG | - | chr4_3:5497306-5497325 | Msa0626120:intron | 40.0% | |
| GTTGCTATAGGACAATTGGA+TGG | - | chr4_3:5497310-5497329 | Msa0626120:intron | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | - | chr4_3:5497935-5497954 | Msa0626120:CDS | 40.0% |
| AGCAAGATGTCTTGACATGT+TGG | - | chr4_3:5498124-5498143 | Msa0626120:intron | 40.0% | |
| !! | CTCTGAAGTTATGATTCACG+TGG | - | chr4_3:5498217-5498236 | Msa0626120:intron | 40.0% |
| GACGATTTCAGTGGTGAATT+AGG | + | chr4_3:5498453-5498472 | None:intergenic | 40.0% | |
| AGAGTGGCTCACAAATAACA+AGG | + | chr4_3:5498510-5498529 | None:intergenic | 40.0% | |
| ATATCAACGTGACACAAGAG+TGG | + | chr4_3:5498526-5498545 | None:intergenic | 40.0% | |
| CGTTGATATTAGAGTTGGAC+TGG | - | chr4_3:5498537-5498556 | Msa0626120:intron | 40.0% | |
| ! | GGTAGTTGAGTTGTAAACTC+TGG | - | chr4_3:5498558-5498577 | Msa0626120:intron | 40.0% |
| TGAGTCAATCATTGGGATTG+TGG | - | chr4_3:5498652-5498671 | Msa0626120:intron | 40.0% | |
| CGATGTCTTGACATCTTTCT+TGG | - | chr4_3:5498952-5498971 | Msa0626120:intron | 40.0% | |
| TTCACTTTAGGCCTCAACAT+TGG | - | chr4_3:5499137-5499156 | Msa0626120:intron | 40.0% | |
| AACTGTCTCTACCAATGTTG+AGG | + | chr4_3:5499151-5499170 | None:intergenic | 40.0% | |
| CCCCACTATATACTAATGTG+TGG | - | chr4_3:5499582-5499601 | Msa0626120:intron | 40.0% | |
| GGCCACACATTAGTATATAG+TGG | + | chr4_3:5499587-5499606 | None:intergenic | 40.0% | |
| CGAGGCTAAAAATCAACACA+TGG | + | chr4_3:5500003-5500022 | None:intergenic | 40.0% | |
| ! | AGTCGGCATACTGATTACAA+TGG | - | chr4_3:5500121-5500140 | Msa0626120:intron | 40.0% |
| ACAATATCGGGAGAACATTG+GGG | + | chr4_3:5500359-5500378 | None:intergenic | 40.0% | |
| CACAATATCGGGAGAACATT+GGG | + | chr4_3:5500360-5500379 | None:intergenic | 40.0% | |
| ACACAATATCGGGAGAACAT+TGG | + | chr4_3:5500361-5500380 | None:intergenic | 40.0% | |
| AGAGGACTTGCACACAATAT+CGG | + | chr4_3:5500372-5500391 | None:intergenic | 40.0% | |
| ATATTGTGTGCAAGTCCTCT+TGG | - | chr4_3:5500372-5500391 | Msa0626120:intron | 40.0% | |
| !! | CCTACAACAACGATGGATTT+TGG | + | chr4_3:5500735-5500754 | None:intergenic | 40.0% |
| CCAAAATCCATCGTTGTTGT+AGG | - | chr4_3:5500732-5500751 | Msa0626120:intron | 40.0% | |
| ! | TTGTCCATGGACCAGTTTTT+AGG | - | chr4_3:5500755-5500774 | Msa0626120:intron | 40.0% |
| ! | TGTCCATGGACCAGTTTTTA+GGG | - | chr4_3:5500756-5500775 | Msa0626120:intron | 40.0% |
| CCTCAAATATGGAATAGTGG+GGG | + | chr4_3:5500801-5500820 | None:intergenic | 40.0% | |
| GCCTCAAATATGGAATAGTG+GGG | + | chr4_3:5500802-5500821 | None:intergenic | 40.0% | |
| AATCCTTAGGCCTAACATGA+AGG | - | chr4_3:5500948-5500967 | Msa0626120:intron | 40.0% | |
| TTACCTTCATGTTAGGCCTA+AGG | + | chr4_3:5500954-5500973 | None:intergenic | 40.0% | |
| CATGTGCTTGTTCATTACTC+TGG | + | chr4_3:5501053-5501072 | None:intergenic | 40.0% | |
| GAGTAATGAACAAGCACATG+AGG | - | chr4_3:5501053-5501072 | Msa0626120:intron | 40.0% | |
| GAACAAGCACATGAGGTTAA+TGG | - | chr4_3:5501060-5501079 | Msa0626120:intron | 40.0% | |
| !! | GCAACTTTTGGAAAGATAGG+GGG | + | chr4_3:5501185-5501204 | None:intergenic | 40.0% |
| !! | CGCAACTTTTGGAAAGATAG+GGG | + | chr4_3:5501186-5501205 | None:intergenic | 40.0% |
| !! | CCGCAACTTTTGGAAAGATA+GGG | + | chr4_3:5501187-5501206 | None:intergenic | 40.0% |
| CCCTATCTTTCCAAAAGTTG+CGG | - | chr4_3:5501184-5501203 | Msa0626120:intron | 40.0% | |
| !! | ACCGCAACTTTTGGAAAGAT+AGG | + | chr4_3:5501188-5501207 | None:intergenic | 40.0% |
| !! | CCCCCTAAGTATTGAATCTT+TGG | - | chr4_3:5501241-5501260 | Msa0626120:intron | 40.0% |
| !!! | AAGGTGACACGTGTCATTTT+TGG | - | chr4_3:5501301-5501320 | Msa0626120:intron | 40.0% |
| !!! | TGGCAGTTTTTTTTTGGCCT+TGG | - | chr4_3:5501321-5501340 | Msa0626120:intron | 40.0% |
| !!! | GGCAGTTTTTTTTTGGCCTT+GGG | - | chr4_3:5501322-5501341 | Msa0626120:intron | 40.0% |
| !!! | GCAGTTTTTTTTTGGCCTTG+GGG | - | chr4_3:5501323-5501342 | Msa0626120:intron | 40.0% |
| !!! | CAGTTTTTTTTTGGCCTTGG+GGG | - | chr4_3:5501324-5501343 | Msa0626120:intron | 40.0% |
| !!! | AGTTTTTTTTTGGCCTTGGG+GGG | - | chr4_3:5501325-5501344 | Msa0626120:intron | 40.0% |
| !! | CCCCCTAAGTATTGATTCTT+TGG | + | chr4_3:5501360-5501379 | None:intergenic | 40.0% |
| ! | ACCGCAACTTTTGCAAAGAT+AGG | - | chr4_3:5501413-5501432 | Msa0626120:intron | 40.0% |
| CCCTATCTTTGCAAAAGTTG+CGG | + | chr4_3:5501417-5501436 | None:intergenic | 40.0% | |
| ! | CCGCAACTTTTGCAAAGATA+GGG | - | chr4_3:5501414-5501433 | Msa0626120:intron | 40.0% |
| ! | CGCAACTTTTGCAAAGATAG+GGG | - | chr4_3:5501415-5501434 | Msa0626120:intron | 40.0% |
| ! | GCAACTTTTGCAAAGATAGG+GGG | - | chr4_3:5501416-5501435 | Msa0626120:intron | 40.0% |
| GTAACATAGAAGTCTCCACA+AGG | - | chr4_3:5501522-5501541 | Msa0626120:intron | 40.0% | |
| ATGAATTGTCTGTTGCCATG+AGG | - | chr4_3:5501591-5501610 | Msa0626120:intron | 40.0% | |
| CCAACTGAGTTAAGCTCACA+AGG | + | chr4_3:5497933-5497952 | None:intergenic | 45.0% | |
| CCTTGTGAGCTTAACTCAGT+TGG | - | chr4_3:5497930-5497949 | Msa0626120:CDS | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | - | chr4_3:5497934-5497953 | Msa0626120:CDS | 45.0% | |
| !! | TGTGCCTTGTTTCGCTTTCT+TGG | - | chr4_3:5498160-5498179 | Msa0626120:intron | 45.0% |
| AGACATCCAGCTGAATCACA+CGG | + | chr4_3:5498371-5498390 | None:intergenic | 45.0% | |
| TAGGTGCGAAACTAGTAGAC+TGG | - | chr4_3:5498743-5498762 | Msa0626120:intron | 45.0% | |
| TGCAACGTTACCTACGTCTA+GGG | + | chr4_3:5498851-5498870 | None:intergenic | 45.0% | |
| TAGGTAACGTTGCACCGAAT+TGG | - | chr4_3:5498857-5498876 | Msa0626120:intron | 45.0% | |
| AGGTAACGTTGCACCGAATT+GGG | - | chr4_3:5498858-5498877 | Msa0626120:intron | 45.0% | |
| TAGTGGGGGCTACCTTTAAT+GGG | + | chr4_3:5499570-5499589 | None:intergenic | 45.0% | |
| ! | ATAGTGGGGGCTACCTTTAA+TGG | + | chr4_3:5499571-5499590 | None:intergenic | 45.0% |
| ! | GCTTGCTAAATGAGCGAGAT+AGG | - | chr4_3:5500092-5500111 | Msa0626120:intron | 45.0% |
| AAGGGGCTAAATTGTCAGTG+AGG | - | chr4_3:5500301-5500320 | Msa0626120:intron | 45.0% | |
| GAGGACTTGCACACAATATC+GGG | + | chr4_3:5500371-5500390 | None:intergenic | 45.0% | |
| TGGACAACCTACAACAACGA+TGG | + | chr4_3:5500742-5500761 | None:intergenic | 45.0% | |
| TCGTTGTTGTAGGTTGTCCA+TGG | - | chr4_3:5500742-5500761 | Msa0626120:intron | 45.0% | |
| !! | GTCCATGGACCAGTTTTTAG+GGG | - | chr4_3:5500757-5500776 | Msa0626120:intron | 45.0% |
| CCCCCACTATTCCATATTTG+AGG | - | chr4_3:5500798-5500817 | Msa0626120:intron | 45.0% | |
| AAGGGTTGAGAACTGAAGAG+TGG | + | chr4_3:5500851-5500870 | None:intergenic | 45.0% | |
| GACACGTGTCACCTTACTTA+GGG | + | chr4_3:5501296-5501315 | None:intergenic | 45.0% | |
| TGACACGTGTCACCTTACTT+AGG | + | chr4_3:5501297-5501316 | None:intergenic | 45.0% | |
| ! | TGTTGCCATGAGGTTTTCGA+CGG | - | chr4_3:5501601-5501620 | Msa0626120:intron | 45.0% |
| !!! | TTAATTTTTTATTTTTTTTG+TGG | + | chr4_3:5498003-5498022 | None:intergenic | 5.0% |
| TCTAGAAACCACGCGCTTCT+TGG | + | chr4_3:5498251-5498270 | None:intergenic | 50.0% | |
| TGAAGACCGTGTGATTCAGC+TGG | - | chr4_3:5498362-5498381 | Msa0626120:intron | 50.0% | |
| TCATTGGGATTGTGGTCGAG+AGG | - | chr4_3:5498660-5498679 | Msa0626120:intron | 50.0% | |
| GCAACGTTACCTACGTCTAG+GGG | + | chr4_3:5498850-5498869 | None:intergenic | 50.0% | |
| GTGCAACGTTACCTACGTCT+AGG | + | chr4_3:5498852-5498871 | None:intergenic | 50.0% | |
| ATGTGACGAAGTAAGCGCCA+AGG | + | chr4_3:5499535-5499554 | None:intergenic | 50.0% | |
| AGTGGGGGCTACCTTTAATG+GGG | + | chr4_3:5499569-5499588 | None:intergenic | 50.0% | |
| AGTATCCTCGTCGAGGCTAA+GGG | - | chr4_3:5500283-5500302 | Msa0626120:intron | 50.0% | |
| GACCCCTAAAAACTGGTCCA+TGG | + | chr4_3:5500762-5500781 | None:intergenic | 50.0% | |
| ! | GTTGCCATGAGGTTTTCGAC+GGG | - | chr4_3:5501602-5501621 | Msa0626120:intron | 50.0% |
| ! | GGATTTAGTGGAGGTGCAAG+CGG | - | chr4_3:5501647-5501666 | Msa0626120:intron | 50.0% |
| TGGATTTGGAGGTGGAGGAA+AGG | - | chr4_3:5501691-5501710 | Msa0626120:intron | 50.0% | |
| GGATTTGGAGGTGGAGGAAA+GGG | - | chr4_3:5501692-5501711 | Msa0626120:intron | 50.0% | |
| ATTGTCGGCGGTGGAATTGT+AGG | - | chr4_3:5501815-5501834 | Msa0626120:intron | 50.0% | |
| !! | GGTCACAATGGTGGGTACAA+TGG | - | chr4_3:5501857-5501876 | Msa0626120:intron | 50.0% |
| ! | AGAGTTGACCAAGAAGCGCG+TGG | - | chr4_3:5498240-5498259 | Msa0626120:intron | 55.0% |
| TGGTCGAGAGGAAGTGAGAG+CGG | - | chr4_3:5498672-5498691 | Msa0626120:intron | 55.0% | |
| ! | ACTTGGTAGCCCCTAGACGT+AGG | - | chr4_3:5498821-5498840 | Msa0626120:intron | 55.0% |
| TAGGGGCTACCTACGTCTAG+GGG | + | chr4_3:5498833-5498852 | None:intergenic | 55.0% | |
| CTAGGGGCTACCTACGTCTA+GGG | + | chr4_3:5498834-5498853 | None:intergenic | 55.0% | |
| TCTAGGGGCTACCTACGTCT+AGG | + | chr4_3:5498835-5498854 | None:intergenic | 55.0% | |
| AGGCAAGCATGTGCCTAAGC+TGG | - | chr4_3:5499921-5499940 | Msa0626120:intron | 55.0% | |
| TCGGAACAGTATCCTCGTCG+AGG | - | chr4_3:5500276-5500295 | Msa0626120:intron | 55.0% | |
| CAGTATCCTCGTCGAGGCTA+AGG | - | chr4_3:5500282-5500301 | Msa0626120:intron | 55.0% | |
| GTATCCTCGTCGAGGCTAAG+GGG | - | chr4_3:5500284-5500303 | Msa0626120:intron | 55.0% | |
| ! | AGAACATTGGGGCGCCAATC+AGG | + | chr4_3:5500348-5500367 | None:intergenic | 55.0% |
| ! | GGGGCTGTAACCGCAACTTT+TGG | + | chr4_3:5501404-5501423 | None:intergenic | 55.0% |
| !! | TTTGGCAGTTTTGGCCCCCA+AGG | - | chr4_3:5501259-5501278 | Msa0626120:intron | 55.0% |
| CTGACGTGGCACCCTAAGTA+AGG | - | chr4_3:5501282-5501301 | Msa0626120:intron | 55.0% | |
| TCCTCCCGTCGAAAACCTCA+TGG | + | chr4_3:5501609-5501628 | None:intergenic | 55.0% | |
| ! | ATGAGGTTTTCGACGGGAGG+AGG | - | chr4_3:5501608-5501627 | Msa0626120:intron | 55.0% |
| ! | AGGGGAGGAGGTGGATTTAG+TGG | - | chr4_3:5501635-5501654 | Msa0626120:intron | 55.0% |
| ! | GGAGGAGGTGGATTTAGTGG+AGG | - | chr4_3:5501638-5501657 | Msa0626120:intron | 55.0% |
| ! | TTTAGTGGAGGTGCAAGCGG+AGG | - | chr4_3:5501650-5501669 | Msa0626120:intron | 55.0% |
| ! | GGAATGGGAGGAGGTGGATT+TGG | - | chr4_3:5501677-5501696 | Msa0626120:intron | 55.0% |
| ! | ATGGGAGGAGGTGGATTTGG+AGG | - | chr4_3:5501680-5501699 | Msa0626120:intron | 55.0% |
| TTTGGAGGTGGAGGAAAGGG+AGG | - | chr4_3:5501695-5501714 | Msa0626120:intron | 55.0% | |
| ATCTGGAGGAGGTGGAGGAA+AGG | - | chr4_3:5501724-5501743 | Msa0626120:intron | 55.0% | |
| TCTGGAGGAGGTGGAGGAAA+GGG | - | chr4_3:5501725-5501744 | Msa0626120:intron | 55.0% | |
| AGGAAAGGGAGGAGGTGGAA+TGG | - | chr4_3:5501739-5501758 | Msa0626120:intron | 55.0% | |
| GGAAAGGGAGGAGGTGGAAT+GGG | - | chr4_3:5501740-5501759 | Msa0626120:intron | 55.0% | |
| GAAGGGATTTGGAGGAGGAG+TGG | - | chr4_3:5501772-5501791 | Msa0626120:intron | 55.0% | |
| GTTGCCAATCGCGGTCACAA+TGG | - | chr4_3:5501845-5501864 | Msa0626120:intron | 55.0% | |
| CCAATCGCGGTCACAATGGT+GGG | - | chr4_3:5501849-5501868 | Msa0626120:intron | 55.0% | |
| GCAAGGTTCGGGGTTCAACC+CGG | - | chr4_3:5497974-5497993 | Msa0626120:CDS | 60.0% | |
| GGTCGAGAGGAAGTGAGAGC+GGG | - | chr4_3:5498673-5498692 | Msa0626120:intron | 60.0% | |
| CGTCTAGGGGCTACCAAGTC+AGG | + | chr4_3:5498820-5498839 | None:intergenic | 60.0% | |
| CGTAGGTAGCCCCTAGACGT+AGG | - | chr4_3:5498838-5498857 | Msa0626120:intron | 60.0% | |
| TTAGCCCCTTAGCCTCGACG+AGG | + | chr4_3:5500291-5500310 | None:intergenic | 60.0% | |
| TGTCAGTGAGGTCTCGAGCG+TGG | - | chr4_3:5500313-5500332 | Msa0626120:intron | 60.0% | |
| GTCAGTGAGGTCTCGAGCGT+GGG | - | chr4_3:5500314-5500333 | Msa0626120:intron | 60.0% | |
| ! | TAGGGTGCCACGTCAGCCTT+GGG | + | chr4_3:5501278-5501297 | None:intergenic | 60.0% |
| ! | TTAGGGTGCCACGTCAGCCT+TGG | + | chr4_3:5501279-5501298 | None:intergenic | 60.0% |
| !! | TTGGCAGTTTTGGCCCCCCA+AGG | + | chr4_3:5501341-5501360 | None:intergenic | 60.0% |
| ! | GCCATGAGGTTTTCGACGGG+AGG | - | chr4_3:5501605-5501624 | Msa0626120:intron | 60.0% |
| ! | AGGTTTTCGACGGGAGGAGG+TGG | - | chr4_3:5501611-5501630 | Msa0626120:intron | 60.0% |
| TTTCGACGGGAGGAGGTGGA+AGG | - | chr4_3:5501615-5501634 | Msa0626120:intron | 60.0% | |
| TTCGACGGGAGGAGGTGGAA+GGG | - | chr4_3:5501616-5501635 | Msa0626120:intron | 60.0% | |
| TGCAAGCGGAGGAGGTGGAA+TGG | - | chr4_3:5501661-5501680 | Msa0626120:intron | 60.0% | |
| GCAAGCGGAGGAGGTGGAAT+GGG | - | chr4_3:5501662-5501681 | Msa0626120:intron | 60.0% | |
| ! | GGAGGAGGTGGATTTGGAGG+TGG | - | chr4_3:5501683-5501702 | Msa0626120:intron | 60.0% |
| ! | GGAGGTGGATTTGGAGGTGG+AGG | - | chr4_3:5501686-5501705 | Msa0626120:intron | 60.0% |
| GGAAAGGGAGGAGGTGGATC+TGG | - | chr4_3:5501707-5501726 | Msa0626120:intron | 60.0% | |
| AAGGGAGGAGGTGGATCTGG+AGG | - | chr4_3:5501710-5501729 | Msa0626120:intron | 60.0% | |
| AAGGGAGGAGGTGGAATGGG+AGG | - | chr4_3:5501743-5501762 | Msa0626120:intron | 60.0% | |
| AGGGAGGAGGTGGAATGGGA+GGG | - | chr4_3:5501744-5501763 | Msa0626120:intron | 60.0% | |
| GGTGGGAAGGGATTTGGAGG+AGG | - | chr4_3:5501767-5501786 | Msa0626120:intron | 60.0% | |
| GGATTTGGAGGAGGAGTGGC+AGG | - | chr4_3:5501776-5501795 | Msa0626120:intron | 60.0% | |
| TTTGGAGGAGGAGTGGCAGG+TGG | - | chr4_3:5501779-5501798 | Msa0626120:intron | 60.0% | |
| TCCACCGCCGACAATTCCAC+CGG | + | chr4_3:5501810-5501829 | None:intergenic | 60.0% | |
| GTCGGCGGTGGAATTGTAGG+CGG | - | chr4_3:5501818-5501837 | Msa0626120:intron | 60.0% | |
| GCCAATCGCGGTCACAATGG+TGG | - | chr4_3:5501848-5501867 | Msa0626120:intron | 60.0% | |
| CCCACCATTGTGACCGCGAT+TGG | + | chr4_3:5501852-5501871 | None:intergenic | 60.0% | |
| TGAGGTCTCGAGCGTGGGTC+AGG | - | chr4_3:5500319-5500338 | Msa0626120:intron | 65.0% | |
| GAGGTCTCGAGCGTGGGTCA+GGG | - | chr4_3:5500320-5500339 | Msa0626120:intron | 65.0% | |
| CGTGGGTCAGGGCTCCTGAT+TGG | - | chr4_3:5500331-5500350 | Msa0626120:intron | 65.0% | |
| TTTGGCCCCCAAGGCTGACG+TGG | - | chr4_3:5501268-5501287 | Msa0626120:intron | 65.0% | |
| ! | AGGGTGCCACGTCAGCCTTG+GGG | + | chr4_3:5501277-5501296 | None:intergenic | 65.0% |
| TCGACGGGAGGAGGTGGAAG+GGG | - | chr4_3:5501617-5501636 | Msa0626120:intron | 65.0% | |
| ! | AGTGGAGGTGCAAGCGGAGG+AGG | - | chr4_3:5501653-5501672 | Msa0626120:intron | 65.0% |
| AGCGGAGGAGGTGGAATGGG+AGG | - | chr4_3:5501665-5501684 | Msa0626120:intron | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+AGG | - | chr4_3:5501668-5501687 | Msa0626120:intron | 65.0% | |
| GGAGGTGGAATGGGAGGAGG+TGG | - | chr4_3:5501671-5501690 | Msa0626120:intron | 65.0% | |
| GGAGGTGGAGGAAAGGGAGG+AGG | - | chr4_3:5501698-5501717 | Msa0626120:intron | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | - | chr4_3:5501701-5501720 | Msa0626120:intron | 65.0% | |
| GGAGGAGGTGGATCTGGAGG+AGG | - | chr4_3:5501713-5501732 | Msa0626120:intron | 65.0% | |
| GGAGGTGGATCTGGAGGAGG+TGG | - | chr4_3:5501716-5501735 | Msa0626120:intron | 65.0% | |
| GGTGGATCTGGAGGAGGTGG+AGG | - | chr4_3:5501719-5501738 | Msa0626120:intron | 65.0% | |
| GGAGGAGGTGGAGGAAAGGG+AGG | - | chr4_3:5501728-5501747 | Msa0626120:intron | 65.0% | |
| GGAGGTGGAGGAAAGGGAGG+AGG | - | chr4_3:5501698-5501717 | Msa0626120:intron | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | - | chr4_3:5501701-5501720 | Msa0626120:intron | 65.0% | |
| GGGAGGAGGTGGAATGGGAG+GGG | - | chr4_3:5501745-5501764 | Msa0626120:intron | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+GGG | - | chr4_3:5501668-5501687 | Msa0626120:intron | 65.0% | |
| GAGGTGGAATGGGAGGGGGT+GGG | - | chr4_3:5501750-5501769 | Msa0626120:intron | 65.0% | |
| TGGAATGGGAGGGGGTGGGA+AGG | - | chr4_3:5501754-5501773 | Msa0626120:intron | 65.0% | |
| GGAATGGGAGGGGGTGGGAA+GGG | - | chr4_3:5501755-5501774 | Msa0626120:intron | 65.0% | |
| GGAGGGGGTGGGAAGGGATT+TGG | - | chr4_3:5501761-5501780 | Msa0626120:intron | 65.0% | |
| GGGGGTGGGAAGGGATTTGG+AGG | - | chr4_3:5501764-5501783 | Msa0626120:intron | 65.0% | |
| AGGAGGAGTGGCAGGTGGAG+CGG | - | chr4_3:5501784-5501803 | Msa0626120:intron | 65.0% | |
| GGAGCGGCCGGTGGAATTGT+CGG | - | chr4_3:5501800-5501819 | Msa0626120:intron | 65.0% | |
| ! | GGGTGCCACGTCAGCCTTGG+GGG | + | chr4_3:5501276-5501295 | None:intergenic | 70.0% |
| ACGGGAGGAGGTGGAAGGGG+AGG | - | chr4_3:5501620-5501639 | Msa0626120:intron | 70.0% | |
| GGAGGAGGTGGAAGGGGAGG+AGG | - | chr4_3:5501623-5501642 | Msa0626120:intron | 70.0% | |
| GGAGGTGGAAGGGGAGGAGG+TGG | - | chr4_3:5501626-5501645 | Msa0626120:intron | 70.0% | |
| ! | GGAGGTGCAAGCGGAGGAGG+TGG | - | chr4_3:5501656-5501675 | Msa0626120:intron | 70.0% |
| GGAGGTGGAATGGGAGGGGG+TGG | - | chr4_3:5501749-5501768 | Msa0626120:intron | 70.0% | |
| GCGGCCGGTGGAATTGTCGG+CGG | - | chr4_3:5501803-5501822 | Msa0626120:intron | 70.0% | |
| GCCGGTGGAATTGTCGGCGG+TGG | - | chr4_3:5501806-5501825 | Msa0626120:intron | 70.0% | |
| GGCGGCGCAGTTGCCAATCG+CGG | - | chr4_3:5501836-5501855 | Msa0626120:intron | 70.0% | |
| GGAGTGGCAGGTGGAGCGGC+CGG | - | chr4_3:5501788-5501807 | Msa0626120:intron | 75.0% | |
| ! | GTGGCAGGTGGAGCGGCCGG+TGG | - | chr4_3:5501791-5501810 | Msa0626120:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5496913 | 5502094 | 5496913 | ID=Msa0626120;Name=Msa0626120 |
| chr4_3 | mRNA | 5496913 | 5502094 | 5496913 | ID=Msa0626120-mRNA-1;Parent=Msa0626120;Name=Msa0626120-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.25|0.2|0.8|0|0.2|5|130|140 |
| chr4_3 | exon | 5496913 | 5497266 | 5496913 | ID=Msa0626120-mRNA-1:exon:1540;Parent=Msa0626120-mRNA-1 |
| chr4_3 | exon | 5497348 | 5497422 | 5497348 | ID=Msa0626120-mRNA-1:exon:1539;Parent=Msa0626120-mRNA-1 |
| chr4_3 | exon | 5497926 | 5498037 | 5497926 | ID=Msa0626120-mRNA-1:exon:1538;Parent=Msa0626120-mRNA-1 |
| chr4_3 | exon | 5498116 | 5498121 | 5498116 | ID=Msa0626120-mRNA-1:exon:1537;Parent=Msa0626120-mRNA-1 |
| chr4_3 | exon | 5502089 | 5502094 | 5502089 | ID=Msa0626120-mRNA-1:exon:1536;Parent=Msa0626120-mRNA-1 |
| chr4_3 | CDS | 5502089 | 5502094 | 5502089 | ID=Msa0626120-mRNA-1:cds;Parent=Msa0626120-mRNA-1 |
| chr4_3 | CDS | 5498116 | 5498121 | 5498116 | ID=Msa0626120-mRNA-1:cds;Parent=Msa0626120-mRNA-1 |
| chr4_3 | CDS | 5497926 | 5498037 | 5497926 | ID=Msa0626120-mRNA-1:cds;Parent=Msa0626120-mRNA-1 |
| chr4_3 | CDS | 5497348 | 5497422 | 5497348 | ID=Msa0626120-mRNA-1:cds;Parent=Msa0626120-mRNA-1 |
| chr4_3 | CDS | 5497043 | 5497266 | 5497043 | ID=Msa0626120-mRNA-1:cds;Parent=Msa0626120-mRNA-1 |
| chr4_3 | three_prime_UTR | 5496913 | 5497042 | 5496913 | ID=Msa0626120-mRNA-1:three_prime_utr;Parent=Msa0626120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
