Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536170 | XP_013454536.1 | 68.072 | 166 | 41 | 3 | 5 | 167 | 3 | 159 | 3.01e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536170 | A0A072UFV8 | 68.072 | 166 | 41 | 3 | 5 | 167 | 3 | 159 | 1.44e-43 | 151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002060 | Msa0536170 | 0.806946 | 6.425901e-50 | -8.615850e-47 |
| Msa0003470 | Msa0536170 | 0.814016 | 1.909568e-51 | -8.615850e-47 |
| Msa0009210 | Msa0536170 | 0.811191 | 7.921124e-51 | -8.615850e-47 |
| Msa0012460 | Msa0536170 | 0.813101 | 3.034525e-51 | -8.615850e-47 |
| Msa0016110 | Msa0536170 | 0.809617 | 1.731522e-50 | -8.615850e-47 |
| Msa0016160 | Msa0536170 | 0.813545 | 2.425081e-51 | -8.615850e-47 |
| Msa0034320 | Msa0536170 | 0.814249 | 1.695974e-51 | -8.615850e-47 |
| Msa0043680 | Msa0536170 | 0.818606 | 1.795779e-52 | -8.615850e-47 |
| Msa0065390 | Msa0536170 | 0.813658 | 2.289870e-51 | -8.615850e-47 |
| Msa0077910 | Msa0536170 | 0.834040 | 3.771181e-56 | -8.615850e-47 |
| Msa0079530 | Msa0536170 | 0.808739 | 2.671647e-50 | -8.615850e-47 |
| Msa0081300 | Msa0536170 | 0.812255 | 4.648422e-51 | -8.615850e-47 |
| Msa0096830 | Msa0536170 | 0.811729 | 6.053091e-51 | -8.615850e-47 |
| Msa0109870 | Msa0536170 | 0.817806 | 2.723504e-52 | -8.615850e-47 |
| Msa0110710 | Msa0536170 | 0.817225 | 3.682892e-52 | -8.615850e-47 |
| Msa0121650 | Msa0536170 | 0.805382 | 1.371610e-49 | -8.615850e-47 |
| Msa0122210 | Msa0536170 | 0.821333 | 4.269292e-53 | -8.615850e-47 |
| Msa0125800 | Msa0536170 | 0.833059 | 6.629638e-56 | -8.615850e-47 |
| Msa0144340 | Msa0536170 | 0.804998 | 1.650480e-49 | -8.615850e-47 |
| Msa0146470 | Msa0536170 | 0.814877 | 1.231926e-51 | -8.615850e-47 |
| Msa0149070 | Msa0536170 | 0.818544 | 1.854266e-52 | -8.615850e-47 |
| Msa0150210 | Msa0536170 | 0.808618 | 2.834690e-50 | -8.615850e-47 |
| Msa0152380 | Msa0536170 | 0.803422 | 3.511987e-49 | -8.615850e-47 |
| Msa0155550 | Msa0536170 | 0.833591 | 4.883565e-56 | -8.615850e-47 |
| Msa0170440 | Msa0536170 | 0.833351 | 5.605609e-56 | -8.615850e-47 |
| Msa0173610 | Msa0536170 | 0.805146 | 1.537085e-49 | -8.615850e-47 |
| Msa0175900 | Msa0536170 | 0.810250 | 1.265820e-50 | -8.615850e-47 |
| Msa0182610 | Msa0536170 | 0.807481 | 4.950700e-50 | -8.615850e-47 |
| Msa0185390 | Msa0536170 | 0.804245 | 2.369557e-49 | -8.615850e-47 |
| Msa0186750 | Msa0536170 | 0.817670 | 2.924224e-52 | -8.615850e-47 |
| Msa0190000 | Msa0536170 | 0.814567 | 1.442553e-51 | -8.615850e-47 |
| Msa0202630 | Msa0536170 | 0.805083 | 1.584495e-49 | -8.615850e-47 |
| Msa0222070 | Msa0536170 | 0.808835 | 2.547305e-50 | -8.615850e-47 |
| Msa0222120 | Msa0536170 | 0.809992 | 1.438374e-50 | -8.615850e-47 |
| Msa0223280 | Msa0536170 | 0.803001 | 4.292336e-49 | -8.615850e-47 |
| Msa0225010 | Msa0536170 | 0.809653 | 1.701632e-50 | -8.615850e-47 |
| Msa0227290 | Msa0536170 | 0.800360 | 1.495177e-48 | -8.615850e-47 |
| Msa0370180 | Msa0536170 | 0.803657 | 3.139877e-49 | -8.615850e-47 |
| Msa0375430 | Msa0536170 | 0.807147 | 5.826451e-50 | -8.615850e-47 |
| Msa0378000 | Msa0536170 | 0.803711 | 3.059694e-49 | -8.615850e-47 |
| Msa0379090 | Msa0536170 | 0.803058 | 4.178930e-49 | -8.615850e-47 |
| Msa0393540 | Msa0536170 | 0.809644 | 1.709331e-50 | -8.615850e-47 |
| Msa0399180 | Msa0536170 | 0.804555 | 2.042069e-49 | -8.615850e-47 |
| Msa0400890 | Msa0536170 | 0.804016 | 2.644418e-49 | -8.615850e-47 |
| Msa0417630 | Msa0536170 | 0.824635 | 7.255635e-54 | -8.615850e-47 |
| Msa0421800 | Msa0536170 | 0.812379 | 4.367677e-51 | -8.615850e-47 |
| Msa0434630 | Msa0536170 | 0.805682 | 1.186390e-49 | -8.615850e-47 |
| Msa0444340 | Msa0536170 | 0.804544 | 2.052902e-49 | -8.615850e-47 |
| Msa0466830 | Msa0536170 | 0.812018 | 5.235424e-51 | -8.615850e-47 |
| Msa0482020 | Msa0536170 | 0.833153 | 6.280766e-56 | -8.615850e-47 |
| Msa0257130 | Msa0536170 | 0.805775 | 1.134345e-49 | -8.615850e-47 |
| Msa0263430 | Msa0536170 | 0.812212 | 4.749398e-51 | -8.615850e-47 |
| Msa0263620 | Msa0536170 | 0.809152 | 2.179199e-50 | -8.615850e-47 |
| Msa0268540 | Msa0536170 | 0.814409 | 1.563573e-51 | -8.615850e-47 |
| Msa0280120 | Msa0536170 | 0.814363 | 1.600253e-51 | -8.615850e-47 |
| Msa0284260 | Msa0536170 | 0.807652 | 4.551839e-50 | -8.615850e-47 |
| Msa0301020 | Msa0536170 | 0.806182 | 9.314595e-50 | -8.615850e-47 |
| Msa0301460 | Msa0536170 | 0.828591 | 8.257241e-55 | -8.615850e-47 |
| Msa0304870 | Msa0536170 | 0.827162 | 1.821286e-54 | -8.615850e-47 |
| Msa0307460 | Msa0536170 | 0.838776 | 2.351685e-57 | -8.615850e-47 |
| Msa0322480 | Msa0536170 | 0.813320 | 2.716754e-51 | -8.615850e-47 |
| Msa0341260 | Msa0536170 | 0.827548 | 1.472333e-54 | -8.615850e-47 |
| Msa0342620 | Msa0536170 | 0.805801 | 1.120270e-49 | -8.615850e-47 |
| Msa0354490 | Msa0536170 | 0.804551 | 2.046239e-49 | -8.615850e-47 |
| Msa0514260 | Msa0536170 | 0.807381 | 5.198262e-50 | -8.615850e-47 |
| Msa0536170 | Msa0552670 | 0.807521 | 4.854606e-50 | -8.615850e-47 |
| Msa0536170 | Msa0574450 | 0.805204 | 1.494458e-49 | -8.615850e-47 |
| Msa0536170 | Msa0577110 | 0.840906 | 6.555869e-58 | -8.615850e-47 |
| Msa0536170 | Msa0577910 | 0.802888 | 4.529386e-49 | -8.615850e-47 |
| Msa0536170 | Msa0586080 | 0.868639 | 5.624858e-66 | -8.615850e-47 |
| Msa0536170 | Msa0598080 | 0.819951 | 8.869543e-53 | -8.615850e-47 |
| Msa0536170 | Msa0606140 | 0.851999 | 6.153918e-61 | -8.615850e-47 |
| Msa0536170 | Msa0624240 | 0.800156 | 1.644677e-48 | -8.615850e-47 |
| Msa0536170 | Msa0626120 | 0.903658 | 2.763628e-79 | -8.615850e-47 |
| Msa0536170 | Msa0640880 | 0.816404 | 5.627531e-52 | -8.615850e-47 |
| Msa0536170 | Msa0646710 | 0.809345 | 1.980762e-50 | -8.615850e-47 |
| Msa0536170 | Msa0647110 | 0.808683 | 2.745710e-50 | -8.615850e-47 |
| Msa0536170 | Msa0647460 | 0.815603 | 8.492821e-52 | -8.615850e-47 |
| Msa0536170 | Msa0659960 | 0.818479 | 1.919052e-52 | -8.615850e-47 |
| Msa0536170 | Msa0685520 | 0.810085 | 1.373261e-50 | -8.615850e-47 |
| Msa0536170 | Msa0686610 | 0.801246 | 9.856127e-49 | -8.615850e-47 |
| Msa0536170 | Msa0690500 | 0.801985 | 6.952048e-49 | -8.615850e-47 |
| Msa0536170 | Msa0702070 | 0.825623 | 4.236439e-54 | -8.615850e-47 |
| Msa0536170 | Msa0702120 | 0.826520 | 2.594028e-54 | -8.615850e-47 |
| Msa0536170 | Msa0703720 | 0.817379 | 3.400300e-52 | -8.615850e-47 |
| Msa0536170 | Msa0704570 | 0.838942 | 2.130960e-57 | -8.615850e-47 |
| Msa0536170 | Msa0704720 | 0.837608 | 4.702828e-57 | -8.615850e-47 |
| Msa0536170 | Msa0705030 | 0.804368 | 2.234355e-49 | -8.615850e-47 |
| Msa0536170 | Msa0708120 | 0.801741 | 7.804218e-49 | -8.615850e-47 |
| Msa0536170 | Msa0774090 | 0.802587 | 5.227581e-49 | -8.615850e-47 |
| Msa0536170 | Msa0804930 | 0.806330 | 8.666563e-50 | -8.615850e-47 |
| Msa0536170 | Msa0828810 | 0.805941 | 1.046798e-49 | -8.615850e-47 |
| Msa0536170 | Msa0851870 | 0.811535 | 6.670277e-51 | -8.615850e-47 |
| Msa0536170 | Msa0900320 | 0.842605 | 2.334557e-58 | -8.615850e-47 |
| Msa0536170 | Msa0910650 | 0.806864 | 6.688576e-50 | -8.615850e-47 |
| Msa0536170 | Msa0930160 | 0.800409 | 1.461047e-48 | -8.615850e-47 |
| Msa0536170 | Msa0931090 | 0.806183 | 9.307798e-50 | -8.615850e-47 |
| Msa0536170 | Msa0959970 | 0.808278 | 3.349584e-50 | -8.615850e-47 |
| Msa0536170 | Msa0965960 | 0.823784 | 1.149302e-53 | -8.615850e-47 |
| Msa0536170 | Msa0992570 | 0.845286 | 4.464056e-59 | -8.615850e-47 |
| Msa0536170 | Msa0992590 | 0.842886 | 1.966239e-58 | -8.615850e-47 |
| Msa0536170 | Msa1002040 | 0.816688 | 4.859929e-52 | -8.615850e-47 |
| Msa0536170 | Msa1002980 | 0.806149 | 9.465848e-50 | -8.615850e-47 |
| Msa0536170 | Msa1013510 | 0.815395 | 9.450639e-52 | -8.615850e-47 |
| Msa0536170 | Msa1022310 | 0.829922 | 3.925135e-55 | -8.615850e-47 |
| Msa0536170 | Msa1045440 | 0.806356 | 8.561780e-50 | -8.615850e-47 |
| Msa0536170 | Msa1061180 | 0.806232 | 9.090264e-50 | -8.615850e-47 |
| Msa0536170 | Msa1070900 | 0.834722 | 2.543450e-56 | -8.615850e-47 |
| Msa0536170 | Msa1086060 | 0.800447 | 1.435227e-48 | -8.615850e-47 |
| Msa0536170 | Msa1088690 | 0.809740 | 1.629962e-50 | -8.615850e-47 |
| Msa0536170 | Msa1090230 | 0.810434 | 1.154767e-50 | -8.615850e-47 |
| Msa0536170 | Msa1128350 | 0.803966 | 2.708086e-49 | -8.615850e-47 |
| Msa0536170 | Msa1154130 | 0.801053 | 1.079633e-48 | -8.615850e-47 |
| Msa0536170 | Msa1166180 | 0.800834 | 1.196759e-48 | -8.615850e-47 |
| Msa0536170 | Msa1166280 | 0.800424 | 1.450858e-48 | -8.615850e-47 |
| Msa0536170 | Msa1183760 | 0.804137 | 2.495914e-49 | -8.615850e-47 |
| Msa0536170 | Msa1190300 | 0.810323 | 1.220558e-50 | -8.615850e-47 |
| Msa0536170 | Msa1198420 | 0.806083 | 9.772441e-50 | -8.615850e-47 |
| Msa0536170 | Msa1199210 | 0.803990 | 2.677152e-49 | -8.615850e-47 |
| Msa0536170 | Msa1208750 | 0.808072 | 3.707249e-50 | -8.615850e-47 |
| Msa0536170 | Msa1209390 | 0.830574 | 2.720119e-55 | -8.615850e-47 |
| Msa0536170 | Msa1209650 | 0.802687 | 4.983713e-49 | -8.615850e-47 |
| Msa0536170 | Msa1215530 | 0.802440 | 5.606041e-49 | -8.615850e-47 |
| Msa0536170 | Msa1220740 | 0.818950 | 1.499792e-52 | -8.615850e-47 |
| Msa0536170 | Msa1263590 | 0.804784 | 1.829234e-49 | -8.615850e-47 |
| Msa0536170 | Msa1264670 | 0.811815 | 5.796716e-51 | -8.615850e-47 |
| Msa0536170 | Msa1286910 | 0.814017 | 1.908452e-51 | -8.615850e-47 |
| Msa0536170 | Msa1293530 | 0.801176 | 1.018588e-48 | -8.615850e-47 |
| Msa0536170 | Msa1298740 | 0.819730 | 9.960088e-53 | -8.615850e-47 |
| Msa0536170 | Msa1300880 | 0.815143 | 1.075014e-51 | -8.615850e-47 |
| Msa0536170 | Msa1324940 | 0.804723 | 1.884224e-49 | -8.615850e-47 |
| Msa0536170 | Msa1325650 | 0.815519 | 8.869286e-52 | -8.615850e-47 |
| Msa0536170 | Msa1327040 | 0.801907 | 7.213614e-49 | -8.615850e-47 |
| Msa0536170 | Msa1334650 | 0.807499 | 4.907209e-50 | -8.615850e-47 |
| Msa0536170 | Msa1336320 | 0.800423 | 1.451162e-48 | -8.615850e-47 |
| Msa0536170 | Msa1337950 | 0.812224 | 4.720196e-51 | -8.615850e-47 |
| Msa0536170 | Msa1339250 | 0.808816 | 2.571284e-50 | -8.615850e-47 |
| Msa0536170 | Msa1354890 | 0.807342 | 5.296500e-50 | -8.615850e-47 |
| Msa0536170 | Msa1364650 | 0.809635 | 1.716170e-50 | -8.615850e-47 |
| Msa0536170 | Msa1367810 | 0.819168 | 1.338279e-52 | -8.615850e-47 |
| Msa0536170 | Msa1375120 | 0.808148 | 3.571269e-50 | -8.615850e-47 |
| Msa0536170 | Msa1416460 | 0.803631 | 3.179600e-49 | -8.615850e-47 |
| Msa0536170 | Msa1424240 | 0.807785 | 4.266307e-50 | -8.615850e-47 |
| Msa0536170 | Msa1427020 | 0.817297 | 3.547678e-52 | -8.615850e-47 |
| Msa0536170 | Msa1439800 | 0.839826 | 1.255713e-57 | -8.615850e-47 |
| Msa0536170 | Msa1449680 | 0.817642 | 2.966862e-52 | -8.615850e-47 |
| Msa0536170 | Msa1460650 | 0.812127 | 4.956995e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536170 | MtrunA17_Chr4g0001911 | 68.072 | 166 | 41 | 3 | 5 | 167 | 3 | 159 | 2.77e-47 | 151 |
| Msa0536170 | MtrunA17_Chr4g0001921 | 54.268 | 164 | 61 | 3 | 6 | 167 | 17 | 168 | 3.03e-24 | 92.8 |
| Msa0536170 | MtrunA17_Chr4g0001891 | 46.988 | 166 | 66 | 4 | 5 | 167 | 3 | 149 | 5.01e-22 | 86.7 |
| Msa0536170 | MtrunA17_Chr4g0001881 | 46.479 | 142 | 62 | 1 | 26 | 167 | 6 | 133 | 5.18e-18 | 75.5 |
| Msa0536170 | MtrunA17_Chr4g0001901 | 38.608 | 158 | 58 | 5 | 11 | 167 | 9 | 128 | 7.32e-14 | 64.7 |
| Msa0536170 | MtrunA17_Chr4g0001961 | 88.889 | 27 | 3 | 0 | 141 | 167 | 109 | 135 | 4.84e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCTTATATATATTT+TGG | 0.152022 | 4_1:-12978966 | Msa0536170:three_prime_UTR |
| GGAGGAGGTGGAAGGGGAGG+AGG | 0.294260 | 4_1:-12979369 | Msa0536170:CDS |
| ACGATAATAGGAAATTTATA+TGG | 0.302449 | 4_1:-12979498 | Msa0536170:intron |
| GGAGGTGGAAGGGGAGGAGG+TGG | 0.304793 | 4_1:-12979366 | Msa0536170:CDS |
| GGTGGAGGAAAGGGAGGAGG+TGG | 0.314138 | 4_1:-12979273 | Msa0536170:intron |
| GCCTTCATCTTCATTTGAAA+TGG | 0.326206 | 4_1:+12979672 | None:intergenic |
| AGGGGAGGAGGTGGATTTAG+TGG | 0.341806 | 4_1:-12979357 | Msa0536170:CDS |
| GGAGGAGGTGGAGGAAAGGG+AGG | 0.348606 | 4_1:-12979279 | Msa0536170:intron |
| GGAAAGGGAGGAGGTGGAAT+GGG | 0.349740 | 4_1:-12979267 | Msa0536170:CDS |
| AAGGGAGGAGGTGGAATGGG+AGG | 0.356510 | 4_1:-12979264 | Msa0536170:CDS |
| GAACAAGCACATGAGGTTAA+TGG | 0.363274 | 4_1:-12979628 | Msa0536170:intron |
| GGAGGTGGAGGAAAGGGAGG+AGG | 0.378637 | 4_1:-12979276 | Msa0536170:intron |
| GGATTTGGAGGAGGAGTGGC+AGG | 0.379627 | 4_1:-12979231 | Msa0536170:CDS |
| GGAGGAGGTGGAATGGGAGG+GGG | 0.398655 | 4_1:-12979261 | Msa0536170:CDS |
| TCGACGGGAGGAGGTGGAAG+GGG | 0.410147 | 4_1:-12979375 | Msa0536170:CDS |
| CATGTGCTTGTTCATTACTC+TGG | 0.410300 | 4_1:+12979638 | None:intergenic |
| ATAGGAAATTTATATGGAAA+TGG | 0.411309 | 4_1:-12979492 | Msa0536170:intron |
| GAGCATTTGAGATGATCAAT+AGG | 0.414061 | 4_1:+12979698 | None:intergenic |
| AGGAAAGGGAGGAGGTGGAA+TGG | 0.417507 | 4_1:-12979268 | Msa0536170:CDS |
| ACGGGAGGAGGTGGAAGGGG+AGG | 0.424441 | 4_1:-12979372 | Msa0536170:CDS |
| GGTGGGAAGGGATTTGGAGG+AGG | 0.425225 | 4_1:-12979240 | Msa0536170:CDS |
| GGGAGGAGGTGGAATGGGAG+GGG | 0.432996 | 4_1:-12979262 | Msa0536170:CDS |
| ATTGTCGGCGGTGGAATTGT+AGG | 0.459997 | 4_1:-12979192 | Msa0536170:CDS |
| GGAGCGGCCGGTGGAATTGT+CGG | 0.460747 | 4_1:-12979207 | Msa0536170:CDS |
| GCCGGTGGAATTGTCGGCGG+TGG | 0.467804 | 4_1:-12979201 | Msa0536170:CDS |
| CCCACCATTGTGACCGCGAT+TGG | 0.472850 | 4_1:+12979158 | None:intergenic |
| AGGGAGGAGGTGGAATGGGA+GGG | 0.484959 | 4_1:-12979263 | Msa0536170:CDS |
| GTGGCAGGTGGAGCGGCCGG+TGG | 0.496396 | 4_1:-12979216 | Msa0536170:CDS |
| GCCATTTCAAATGAAGATGA+AGG | 0.496545 | 4_1:-12979673 | Msa0536170:CDS |
| GGAGTGGCAGGTGGAGCGGC+CGG | 0.498879 | 4_1:-12979219 | Msa0536170:CDS |
| TTTCGACGGGAGGAGGTGGA+AGG | 0.517005 | 4_1:-12979377 | Msa0536170:CDS |
| AGGAGGAGTGGCAGGTGGAG+CGG | 0.523525 | 4_1:-12979223 | Msa0536170:CDS |
| GCCAATCGCGGTCACAATGG+TGG | 0.524910 | 4_1:-12979159 | Msa0536170:CDS |
| GAAGGGATTTGGAGGAGGAG+TGG | 0.528933 | 4_1:-12979235 | Msa0536170:CDS |
| TTCGACGGGAGGAGGTGGAA+GGG | 0.547737 | 4_1:-12979376 | Msa0536170:CDS |
| AGAAAACATGATATTAATTG+TGG | 0.566148 | 4_1:+12978943 | None:intergenic |
| GGCGGCGCAGTTGCCAATCG+CGG | 0.571389 | 4_1:-12979171 | Msa0536170:CDS |
| TTTGGAGGAGGAGTGGCAGG+TGG | 0.584933 | 4_1:-12979228 | Msa0536170:CDS |
| CCAATCGCGGTCACAATGGT+GGG | 0.596838 | 4_1:-12979158 | Msa0536170:CDS |
| TCCTCCCGTCGAAAACCTCA+TGG | 0.608672 | 4_1:+12979386 | None:intergenic |
| GCAGCAATAAAGACTAAGAG+AGG | 0.612071 | 4_1:+12978981 | None:intergenic |
| TCCACCGCCGACAATTCCAC+CGG | 0.614611 | 4_1:+12979200 | None:intergenic |
| GAGTAATGAACAAGCACATG+AGG | 0.616284 | 4_1:-12979635 | Msa0536170:CDS |
| GGAGGAGGTGGATTTAGTGG+AGG | 0.619290 | 4_1:-12979354 | Msa0536170:intron |
| GGTCACAATGGTGGGTACAA+TGG | 0.639906 | 4_1:-12979150 | Msa0536170:CDS |
| GTTGCCAATCGCGGTCACAA+TGG | 0.650629 | 4_1:-12979162 | Msa0536170:CDS |
| GTCGGCGGTGGAATTGTAGG+CGG | 0.660320 | 4_1:-12979189 | Msa0536170:CDS |
| GCGGCCGGTGGAATTGTCGG+CGG | 0.697053 | 4_1:-12979204 | Msa0536170:CDS |
| GTAACATAGAAGTCTCCACA+AGG | 0.724906 | 4_1:-12979470 | Msa0536170:CDS |
| ATGAATTGTCTGTTGCCATG+AGG | 0.730410 | 4_1:-12979401 | Msa0536170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATATTAATTTTATAA+AGG | - | chr4_1:12981108-12981127 | Msa0536170:intron | 0.0% |
| !! | AAATAAAAAATTAAATGAGT+TGG | - | chr4_1:12980033-12980052 | Msa0536170:intron | 10.0% |
| !!! | ATGAAATTAATGTATTTTTT+TGG | + | chr4_1:12981085-12981104 | None:intergenic | 10.0% |
| !!! | TATAAATATATATTTTTCCT+TGG | - | chr4_1:12981523-12981542 | Msa0536170:intron | 10.0% |
| !!! | TTTTTTAATTTAGAACTATA+GGG | + | chr4_1:12981758-12981777 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATTTAGAACTAT+AGG | + | chr4_1:12981759-12981778 | None:intergenic | 10.0% |
| !!! | TTACTTTTTCTGAAAAATAT+AGG | - | chr4_1:12979361-12979380 | Msa0536170:CDS | 15.0% |
| !!! | TACTTTTTCTGAAAAATATA+GGG | - | chr4_1:12979362-12979381 | Msa0536170:CDS | 15.0% |
| !!! | ATTTTTTATTTTTTTTGTGG+TGG | + | chr4_1:12980024-12980043 | None:intergenic | 15.0% |
| !! | AACAACAACTTTAATAATAA+AGG | + | chr4_1:12980922-12980941 | None:intergenic | 15.0% |
| !!! | CACATGTTTATTTATTTTTT+TGG | - | chr4_1:12981193-12981212 | Msa0536170:intron | 15.0% |
| !!! | ACTCAATATCATATATATTT+TGG | + | chr4_1:12981317-12981336 | None:intergenic | 15.0% |
| !!! | ATACTCAATCTAAAATATTT+TGG | + | chr4_1:12981363-12981382 | None:intergenic | 15.0% |
| !!! | AAATATTTTAGAAAAACTTG+AGG | - | chr4_1:12981432-12981451 | Msa0536170:intron | 15.0% |
| !!! | ATCTTCATTTTCATTTGATT+TGG | + | chr4_1:12978987-12979006 | None:intergenic | 20.0% |
| !!! | TGTGAAGTTTTAAATCTTAA+AGG | + | chr4_1:12979141-12979160 | None:intergenic | 20.0% |
| !!! | AAGTTGCTAAACATTATTTT+AGG | + | chr4_1:12979207-12979226 | None:intergenic | 20.0% |
| !!! | GAAAATTTTGAGTTTGTATT+AGG | - | chr4_1:12979235-12979254 | Msa0536170:CDS | 20.0% |
| !! | TAGTAAAAAAATTCAATCCA+AGG | - | chr4_1:12979297-12979316 | Msa0536170:intron | 20.0% |
| !!! | ATTTGCTCTAATTTTTCTAA+AGG | - | chr4_1:12979390-12979409 | Msa0536170:CDS | 20.0% |
| !!! | AATTCATTTTCATGGAATTT+GGG | + | chr4_1:12979441-12979460 | None:intergenic | 20.0% |
| !!! | TAATTCATTTTCATGGAATT+TGG | + | chr4_1:12979442-12979461 | None:intergenic | 20.0% |
| !!! | CTATGAATAATTCATTTTCA+TGG | + | chr4_1:12979449-12979468 | None:intergenic | 20.0% |
| !! | AATCATAACATGAATATTGA+TGG | - | chr4_1:12979644-12979663 | Msa0536170:CDS | 20.0% |
| !! | AAAAGAAAGAAGAATATTGA+TGG | - | chr4_1:12979679-12979698 | Msa0536170:CDS | 20.0% |
| !! | ACATAATTAAGTATGTTGAT+TGG | + | chr4_1:12979766-12979785 | None:intergenic | 20.0% |
| !! | ACAAATTAGATTAAATGAGT+TGG | - | chr4_1:12979930-12979949 | Msa0536170:intron | 20.0% |
| !!! | TAACATAACTTCTTTTTCAA+TGG | + | chr4_1:12980068-12980087 | None:intergenic | 20.0% |
| !!! | ACTTTTGTTTTAACAAAATG+CGG | + | chr4_1:12980125-12980144 | None:intergenic | 20.0% |
| !!! | AATGATTTTGATGCATAAAT+CGG | + | chr4_1:12980404-12980423 | None:intergenic | 20.0% |
| !! | ATCAAAATCATTATGCATTT+AGG | - | chr4_1:12980412-12980431 | Msa0536170:intron | 20.0% |
| !! | TAAAGTGAATTATATGAATG+AGG | + | chr4_1:12981134-12981153 | None:intergenic | 20.0% |
| !! | TCATTCATATAATTCACTTT+AGG | - | chr4_1:12981133-12981152 | Msa0536170:intron | 20.0% |
| !!! | TATTTTTTTGGTGTTGATTT+TGG | - | chr4_1:12981205-12981224 | Msa0536170:intron | 20.0% |
| !!! | TTTTTGTACTAGATCTAATA+TGG | + | chr4_1:12981257-12981276 | None:intergenic | 20.0% |
| !!! | GAACACTATTAGAAATATTT+TGG | + | chr4_1:12981410-12981429 | None:intergenic | 20.0% |
| !! | ATAATTATGTACCTCATTAA+AGG | - | chr4_1:12981563-12981582 | Msa0536170:intron | 20.0% |
| !! | ATAAATACAATGTCTCATAT+TGG | + | chr4_1:12981675-12981694 | None:intergenic | 20.0% |
| !!! | TGACATTTTTCTTTTTTCTT+TGG | + | chr4_1:12981897-12981916 | None:intergenic | 20.0% |
| !!! | TTTTTGTCATTAGAAGAAAA+TGG | + | chr4_1:12981967-12981986 | None:intergenic | 20.0% |
| !!! | TGTTAAACTTTTTTGTGTAT+CGG | - | chr4_1:12982263-12982282 | Msa0536170:intron | 20.0% |
| !! | GTCTGCAAAAATTATATAAA+GGG | + | chr4_1:12982873-12982892 | None:intergenic | 20.0% |
| !! | AGTCTGCAAAAATTATATAA+AGG | + | chr4_1:12982874-12982893 | None:intergenic | 20.0% |
| !! | AAAAATATTACCTTCATGTT+AGG | + | chr4_1:12982962-12982981 | None:intergenic | 20.0% |
| !!! | AAGTTTTTACTTGTTTGAAA+AGG | + | chr4_1:12983100-12983119 | None:intergenic | 20.0% |
| !!! | ACGTGTTTTTATTTTAATCT+TGG | - | chr4_1:12983148-12983167 | Msa0536170:intron | 20.0% |
| !! | ACGATAATAGGAAATTTATA+TGG | - | chr4_1:12983191-12983210 | Msa0536170:intron | 20.0% |
| !! | ATAGGAAATTTATATGGAAA+TGG | - | chr4_1:12983197-12983216 | Msa0536170:intron | 20.0% |
| !! | AAAAATGAAACTAAACTAAG+TGG | + | chr4_1:12983666-12983685 | None:intergenic | 20.0% |
| !!! | ATTGCTGCTTATATATATTT+TGG | - | chr4_1:12983723-12983742 | Msa0536170:intron | 20.0% |
| !! | AGAAAACATGATATTAATTG+TGG | + | chr4_1:12983749-12983768 | None:intergenic | 20.0% |
| ! | TTGCTACAAACAAATATCTT+AGG | + | chr4_1:12979274-12979293 | None:intergenic | 25.0% |
| !!! | CCTATTTTGAAATGAAGTAA+TGG | + | chr4_1:12979567-12979586 | None:intergenic | 25.0% |
| ! | CCATTACTTCATTTCAAAAT+AGG | - | chr4_1:12979564-12979583 | Msa0536170:intron | 25.0% |
| ! | GAAAAAGAAGTTATGTTAAG+TGG | - | chr4_1:12980070-12980089 | Msa0536170:intron | 25.0% |
| !! | TATGTTAAGTGGAATTTGTT+AGG | - | chr4_1:12980081-12980100 | Msa0536170:intron | 25.0% |
| ! | ATAACTTCAGAGAATCTTTA+GGG | + | chr4_1:12980233-12980252 | None:intergenic | 25.0% |
| !!! | ATGATTTTGATGCATAAATC+GGG | + | chr4_1:12980403-12980422 | None:intergenic | 25.0% |
| ! | TATGCATTTAGGCTATATAA+AGG | - | chr4_1:12980423-12980442 | Msa0536170:intron | 25.0% |
| ! | CTCAACAGTTATAACATAAA+TGG | + | chr4_1:12980643-12980662 | None:intergenic | 25.0% |
| ! | AGTCTTAGATAGAAATTACA+CGG | - | chr4_1:12980719-12980738 | Msa0536170:intron | 25.0% |
| ! | ACAACTTTAATAATAAAGGC+AGG | + | chr4_1:12980918-12980937 | None:intergenic | 25.0% |
| !!! | CATAATTGATTCTGAAATTC+TGG | + | chr4_1:12981029-12981048 | None:intergenic | 25.0% |
| ! | ATATGGAAATCCAAATACAA+CGG | + | chr4_1:12981240-12981259 | None:intergenic | 25.0% |
| ! | TCTCATATTTAATAGATCAC+CGG | + | chr4_1:12981616-12981635 | None:intergenic | 25.0% |
| ! | TTCACTAATGTTCCAAAATA+TGG | - | chr4_1:12981711-12981730 | Msa0536170:intron | 25.0% |
| !! | CAAACTTGATTTCCATATTT+TGG | + | chr4_1:12981726-12981745 | None:intergenic | 25.0% |
| !! | ATTTAGAACTATAGGGTTAT+CGG | + | chr4_1:12981751-12981770 | None:intergenic | 25.0% |
| ! | ATTCTACTATATACTAAACG+AGG | + | chr4_1:12982029-12982048 | None:intergenic | 25.0% |
| !!! | AAAAATGATTTTGATGTGAG+AGG | - | chr4_1:12982068-12982087 | Msa0536170:intron | 25.0% |
| !! | CAATGATGAATTTAGAGTTA+TGG | - | chr4_1:12982166-12982185 | Msa0536170:intron | 25.0% |
| ! | TTACTAAAAACAAAACCAAG+AGG | + | chr4_1:12982396-12982415 | None:intergenic | 25.0% |
| !! | CAATTGATTGGATATTGTTT+TGG | - | chr4_1:12982463-12982482 | Msa0536170:intron | 25.0% |
| !!! | AATTCTTAAAGAGTGTCTTA+AGG | + | chr4_1:12982506-12982525 | None:intergenic | 25.0% |
| ! | ACTCTAGCAAAAAATCAAAT+GGG | + | chr4_1:12982688-12982707 | None:intergenic | 25.0% |
| ! | TACTCTAGCAAAAAATCAAA+TGG | + | chr4_1:12982689-12982708 | None:intergenic | 25.0% |
| ! | TTAAAGTAGACAATGCAATT+TGG | + | chr4_1:12982713-12982732 | None:intergenic | 25.0% |
| ! | AGTGGATGAAAAATAGTTTA+GGG | + | chr4_1:12982838-12982857 | None:intergenic | 25.0% |
| !! | TATATAATTTTTGCAGACTC+TGG | - | chr4_1:12982875-12982894 | Msa0536170:intron | 25.0% |
| ! | ATTATTTGCAAAGAATCCTT+AGG | - | chr4_1:12982936-12982955 | Msa0536170:intron | 25.0% |
| ! | TTTACTTGTTTGAAAAGGTA+AGG | + | chr4_1:12983095-12983114 | None:intergenic | 25.0% |
| !! | TTGTGTTATTCAACGATAAT+AGG | - | chr4_1:12983179-12983198 | Msa0536170:intron | 25.0% |
| CAATATGAATTTCACTTCAG+TGG | - | chr4_1:12979009-12979028 | Msa0536170:three_prime_UTR | 30.0% | |
| GAACAAACTCATGAGATTAA+TGG | - | chr4_1:12979055-12979074 | Msa0536170:exon | 30.0% | |
| ATGTAAACAATACGTGCATT+TGG | + | chr4_1:12979819-12979838 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr4_1:12979981-12980000 | Msa0536170:intron | 30.0% | |
| TGCATAATATATGCAAGGTT+CGG | - | chr4_1:12979986-12980005 | Msa0536170:intron | 30.0% | |
| !!! | TTTATTTTTTTTGTGGTGGC+CGG | + | chr4_1:12980020-12980039 | None:intergenic | 30.0% |
| CATAACTTCAGAGAATCTTT+AGG | + | chr4_1:12980234-12980253 | None:intergenic | 30.0% | |
| !!! | CATTCACAAAAGTGTCTTTT+AGG | - | chr4_1:12980479-12980498 | Msa0536170:intron | 30.0% |
| GTCTTAGATAGAAATTACAC+GGG | - | chr4_1:12980720-12980739 | Msa0536170:intron | 30.0% | |
| ! | AGTTGTTTGTTAACCCAATT+CGG | + | chr4_1:12980881-12980900 | None:intergenic | 30.0% |
| TAATAAAGGCAGGAAGTAAA+AGG | + | chr4_1:12980908-12980927 | None:intergenic | 30.0% | |
| ! | GATTTTCAAACCGTTGTATT+TGG | - | chr4_1:12981227-12981246 | Msa0536170:intron | 30.0% |
| AGATGCATGAATATCATCAT+TGG | - | chr4_1:12981820-12981839 | Msa0536170:intron | 30.0% | |
| TTGATGTGAGAGGTTATTAA+TGG | - | chr4_1:12982078-12982097 | Msa0536170:intron | 30.0% | |
| !!! | GTTTTTAGTAAAAGACGCTT+CGG | - | chr4_1:12982405-12982424 | Msa0536170:intron | 30.0% |
| ATACCTCAATCTCAATTGAT+TGG | - | chr4_1:12982451-12982470 | Msa0536170:intron | 30.0% | |
| TATCCAATCAATTGAGATTG+AGG | + | chr4_1:12982457-12982476 | None:intergenic | 30.0% | |
| AATGCTAATGAGTGTCTAAA+GGG | + | chr4_1:12982663-12982682 | None:intergenic | 30.0% | |
| AAATGCTAATGAGTGTCTAA+AGG | + | chr4_1:12982664-12982683 | None:intergenic | 30.0% | |
| GAGTGGATGAAAAATAGTTT+AGG | + | chr4_1:12982839-12982858 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTTGTTCAACCTTG+TGG | + | chr4_1:12983237-12983256 | None:intergenic | 30.0% |
| GAACAACAAAAATGTGATTG+TGG | - | chr4_1:12983244-12983263 | Msa0536170:intron | 30.0% | |
| AATGTTGAGACACAAAAATG+AGG | + | chr4_1:12983599-12983618 | None:intergenic | 30.0% | |
| ! | TGATTTTATGTATGAGCTTC+TGG | - | chr4_1:12983618-12983637 | Msa0536170:intron | 30.0% |
| TATCATGTCGATGTTGCTAT+AGG | - | chr4_1:12979321-12979340 | Msa0536170:intron | 35.0% | |
| GCATAATATATGCAAGGTTC+GGG | - | chr4_1:12979987-12980006 | Msa0536170:intron | 35.0% | |
| CATAATATATGCAAGGTTCG+GGG | - | chr4_1:12979988-12980007 | Msa0536170:intron | 35.0% | |
| !!! | TTATTTTTTTTGTGGTGGCC+GGG | + | chr4_1:12980019-12980038 | None:intergenic | 35.0% |
| ATATCCAAGAAAGCGAAACA+AGG | + | chr4_1:12980191-12980210 | None:intergenic | 35.0% | |
| ! | TGGTTTCTAGAAGCAATGTT+AGG | - | chr4_1:12980284-12980303 | Msa0536170:intron | 35.0% |
| ! | TTTCTAGAAGCAATGTTAGG+CGG | - | chr4_1:12980287-12980306 | Msa0536170:intron | 35.0% |
| TCTTCAGCACAATATTCTGA+AGG | + | chr4_1:12980372-12980391 | None:intergenic | 35.0% | |
| TTTGTGAATGACGATTTCAG+TGG | + | chr4_1:12980469-12980488 | None:intergenic | 35.0% | |
| TGTCACGTTGATATTAGAGT+TGG | - | chr4_1:12980539-12980558 | Msa0536170:intron | 35.0% | |
| ATAAATGGAGACACACTCTT+AGG | + | chr4_1:12980628-12980647 | None:intergenic | 35.0% | |
| ATAACTGTTGAGTCAATCAC+TGG | - | chr4_1:12980651-12980670 | Msa0536170:intron | 35.0% | |
| TAACTGTTGAGTCAATCACT+GGG | - | chr4_1:12980652-12980671 | Msa0536170:intron | 35.0% | |
| AAATTACACGGGTAGTGATT+AGG | - | chr4_1:12980731-12980750 | Msa0536170:intron | 35.0% | |
| AGTGAAATTTCTTCCTGACT+TGG | - | chr4_1:12980811-12980830 | Msa0536170:intron | 35.0% | |
| CACACATTAGTATATAGTGG+GGG | + | chr4_1:12981592-12981611 | None:intergenic | 35.0% | |
| CCACACATTAGTATATAGTG+GGG | + | chr4_1:12981593-12981612 | None:intergenic | 35.0% | |
| GCCACACATTAGTATATAGT+GGG | + | chr4_1:12981594-12981613 | None:intergenic | 35.0% | |
| ACTATATACTAATGTGTGGC+CGG | - | chr4_1:12981594-12981613 | Msa0536170:intron | 35.0% | |
| ! | CATTGGCTATTGTTGAAACT+TGG | - | chr4_1:12981837-12981856 | Msa0536170:intron | 35.0% |
| !!! | AAATGTCATTTTCTGTGCTG+AGG | - | chr4_1:12981909-12981928 | Msa0536170:intron | 35.0% |
| GAAATAAGTCATTCCAGCTT+AGG | + | chr4_1:12981945-12981964 | None:intergenic | 35.0% | |
| AGCGAGATAGGTTATTAAGT+CGG | - | chr4_1:12982112-12982131 | Msa0536170:intron | 35.0% | |
| TAATATGGACCCCTAAAAAC+TGG | + | chr4_1:12982774-12982793 | None:intergenic | 35.0% | |
| ! | TGGGGGCATATAATGTAATA+TGG | + | chr4_1:12982789-12982808 | None:intergenic | 35.0% |
| AGCCTCAAATATGGAAAAGT+GGG | + | chr4_1:12982808-12982827 | None:intergenic | 35.0% | |
| AAGCCTCAAATATGGAAAAG+TGG | + | chr4_1:12982809-12982828 | None:intergenic | 35.0% | |
| GGAAACAAAAGCCTCAAATA+TGG | + | chr4_1:12982817-12982836 | None:intergenic | 35.0% | |
| ! | GAGCATTTGAGATGATCAAT+AGG | + | chr4_1:12982994-12983013 | None:intergenic | 35.0% |
| GCCATTTCAAATGAAGATGA+AGG | - | chr4_1:12983016-12983035 | Msa0536170:intron | 35.0% | |
| GCCTTCATCTTCATTTGAAA+TGG | + | chr4_1:12983020-12983039 | None:intergenic | 35.0% | |
| CAACATCGACATGATATCCT+TGG | + | chr4_1:12979317-12979336 | None:intergenic | 40.0% | |
| CGATGTTGCTATAGGACAAT+TGG | - | chr4_1:12979329-12979348 | Msa0536170:intron | 40.0% | |
| GTTGCTATAGGACAATTGGA+TGG | - | chr4_1:12979333-12979352 | Msa0536170:intron | 40.0% | |
| AGCAAGATGTCTTGACATGT+TGG | - | chr4_1:12980148-12980167 | Msa0536170:intron | 40.0% | |
| !! | CTCTGAAGTTATGATTCACG+TGG | - | chr4_1:12980241-12980260 | Msa0536170:intron | 40.0% |
| GACGATTTCAGTGGTGAATT+AGG | + | chr4_1:12980460-12980479 | None:intergenic | 40.0% | |
| AGAGTGGCTCACAAATAACA+AGG | + | chr4_1:12980517-12980536 | None:intergenic | 40.0% | |
| ATATCAACGTGACACAAGAG+TGG | + | chr4_1:12980533-12980552 | None:intergenic | 40.0% | |
| CGTTGATATTAGAGTTGGAC+TGG | - | chr4_1:12980544-12980563 | Msa0536170:intron | 40.0% | |
| ! | GGTAGTTGAGTTGTAAACTC+TGG | - | chr4_1:12980565-12980584 | Msa0536170:intron | 40.0% |
| CGATGTCTTGACATCTTTCT+TGG | - | chr4_1:12980959-12980978 | Msa0536170:intron | 40.0% | |
| TTCACTTTAGGCCTCAACAT+TGG | - | chr4_1:12981145-12981164 | Msa0536170:intron | 40.0% | |
| AACTGTCTCTACCAATGTTG+AGG | + | chr4_1:12981159-12981178 | None:intergenic | 40.0% | |
| CCCCACTATATACTAATGTG+TGG | - | chr4_1:12981590-12981609 | Msa0536170:intron | 40.0% | |
| GGCCACACATTAGTATATAG+TGG | + | chr4_1:12981595-12981614 | None:intergenic | 40.0% | |
| CGAGGCTAAAAATCAACACA+TGG | + | chr4_1:12982011-12982030 | None:intergenic | 40.0% | |
| ! | AGTCGGCATACTGATTACAA+TGG | - | chr4_1:12982129-12982148 | Msa0536170:intron | 40.0% |
| ACAATATCGGGAGAACATTG+GGG | + | chr4_1:12982365-12982384 | None:intergenic | 40.0% | |
| CACAATATCGGGAGAACATT+GGG | + | chr4_1:12982366-12982385 | None:intergenic | 40.0% | |
| ACACAATATCGGGAGAACAT+TGG | + | chr4_1:12982367-12982386 | None:intergenic | 40.0% | |
| AGAGGACTTGCACACAATAT+CGG | + | chr4_1:12982378-12982397 | None:intergenic | 40.0% | |
| ATATTGTGTGCAAGTCCTCT+TGG | - | chr4_1:12982378-12982397 | Msa0536170:intron | 40.0% | |
| !! | CCTACAACAACGATGGATTT+TGG | + | chr4_1:12982740-12982759 | None:intergenic | 40.0% |
| CCAAAATCCATCGTTGTTGT+AGG | - | chr4_1:12982737-12982756 | Msa0536170:intron | 40.0% | |
| ! | TTGTCCATGGACCAGTTTTT+AGG | - | chr4_1:12982760-12982779 | Msa0536170:intron | 40.0% |
| ! | TGTCCATGGACCAGTTTTTA+GGG | - | chr4_1:12982761-12982780 | Msa0536170:intron | 40.0% |
| CCTCAAATATGGAAAAGTGG+GGG | + | chr4_1:12982806-12982825 | None:intergenic | 40.0% | |
| GCCTCAAATATGGAAAAGTG+GGG | + | chr4_1:12982807-12982826 | None:intergenic | 40.0% | |
| AATCCTTAGGCCTAACATGA+AGG | - | chr4_1:12982949-12982968 | Msa0536170:intron | 40.0% | |
| TTACCTTCATGTTAGGCCTA+AGG | + | chr4_1:12982955-12982974 | None:intergenic | 40.0% | |
| CATGTGCTTGTTCATTACTC+TGG | + | chr4_1:12983054-12983073 | None:intergenic | 40.0% | |
| GAGTAATGAACAAGCACATG+AGG | - | chr4_1:12983054-12983073 | Msa0536170:intron | 40.0% | |
| GAACAAGCACATGAGGTTAA+TGG | - | chr4_1:12983061-12983080 | Msa0536170:intron | 40.0% | |
| GTAACATAGAAGTCTCCACA+AGG | - | chr4_1:12983219-12983238 | Msa0536170:intron | 40.0% | |
| ATGAATTGTCTGTTGCCATG+AGG | - | chr4_1:12983288-12983307 | Msa0536170:intron | 40.0% | |
| GCAGCAATAAAGACTAAGAG+AGG | + | chr4_1:12983711-12983730 | None:intergenic | 40.0% | |
| TGGTCCTTGTGAGCTTAACT+CGG | - | chr4_1:12979950-12979969 | Msa0536170:intron | 45.0% | |
| ! | TGAGCTTAACTCGGTTGGTA+GGG | - | chr4_1:12979959-12979978 | Msa0536170:intron | 45.0% |
| !! | TGTGCCTTGTTTCGCTTTCT+TGG | - | chr4_1:12980184-12980203 | Msa0536170:intron | 45.0% |
| TGAGTCAATCACTGGGATTG+TGG | - | chr4_1:12980659-12980678 | Msa0536170:intron | 45.0% | |
| TAGGTGCGAAACTAGTAGAC+TGG | - | chr4_1:12980750-12980769 | Msa0536170:intron | 45.0% | |
| TGCAACGTTACCTACGTCTA+GGG | + | chr4_1:12980858-12980877 | None:intergenic | 45.0% | |
| TAGGTAACGTTGCACCGAAT+TGG | - | chr4_1:12980864-12980883 | Msa0536170:intron | 45.0% | |
| AGGTAACGTTGCACCGAATT+GGG | - | chr4_1:12980865-12980884 | Msa0536170:intron | 45.0% | |
| ! | GCTTGCTAAATGAGCGAGAT+AGG | - | chr4_1:12982100-12982119 | Msa0536170:intron | 45.0% |
| AAGGGGCTAAATTGTCAGTG+AGG | - | chr4_1:12982307-12982326 | Msa0536170:intron | 45.0% | |
| GAGGACTTGCACACAATATC+GGG | + | chr4_1:12982377-12982396 | None:intergenic | 45.0% | |
| TGGACAACCTACAACAACGA+TGG | + | chr4_1:12982747-12982766 | None:intergenic | 45.0% | |
| TCGTTGTTGTAGGTTGTCCA+TGG | - | chr4_1:12982747-12982766 | Msa0536170:intron | 45.0% | |
| !! | GTCCATGGACCAGTTTTTAG+GGG | - | chr4_1:12982762-12982781 | Msa0536170:intron | 45.0% |
| !! | CCCCCACTTTTCCATATTTG+AGG | - | chr4_1:12982803-12982822 | Msa0536170:intron | 45.0% |
| AAAGGGTGAGAACTGAAGAG+TGG | + | chr4_1:12982856-12982875 | None:intergenic | 45.0% | |
| ! | TGTTGCCATGAGGTTTTCGA+CGG | - | chr4_1:12983298-12983317 | Msa0536170:intron | 45.0% |
| !!! | TTAATTTTTTATTTTTTTTG+TGG | + | chr4_1:12980027-12980046 | None:intergenic | 5.0% |
| CCAACCGAGTTAAGCTCACA+AGG | + | chr4_1:12979957-12979976 | None:intergenic | 50.0% | |
| CCTTGTGAGCTTAACTCGGT+TGG | - | chr4_1:12979954-12979973 | Msa0536170:intron | 50.0% | |
| GTGAGCTTAACTCGGTTGGT+AGG | - | chr4_1:12979958-12979977 | Msa0536170:intron | 50.0% | |
| TCTAGAAACCACGCGCTTCT+TGG | + | chr4_1:12980275-12980294 | None:intergenic | 50.0% | |
| GCAACGTTACCTACGTCTAG+GGG | + | chr4_1:12980857-12980876 | None:intergenic | 50.0% | |
| GTGCAACGTTACCTACGTCT+AGG | + | chr4_1:12980859-12980878 | None:intergenic | 50.0% | |
| ATGTGACGAAGTAAGCGCCA+AGG | + | chr4_1:12981543-12981562 | None:intergenic | 50.0% | |
| AGTGGGGGCTACCTTTAATG+AGG | + | chr4_1:12981577-12981596 | None:intergenic | 50.0% | |
| AGTATCCTCGTCGAGGCTAA+GGG | - | chr4_1:12982289-12982308 | Msa0536170:intron | 50.0% | |
| GACCCCTAAAAACTGGTCCA+TGG | + | chr4_1:12982767-12982786 | None:intergenic | 50.0% | |
| ! | GTTGCCATGAGGTTTTCGAC+GGG | - | chr4_1:12983299-12983318 | Msa0536170:intron | 50.0% |
| ! | GGATTTAGTGGAGGTGCAAG+CGG | - | chr4_1:12983344-12983363 | Msa0536170:intron | 50.0% |
| TGGATTTGGAGGTGGAGGAA+AGG | - | chr4_1:12983373-12983392 | Msa0536170:intron | 50.0% | |
| GGATTTGGAGGTGGAGGAAA+GGG | - | chr4_1:12983374-12983393 | Msa0536170:intron | 50.0% | |
| ATTGTCGGCGGTGGAATTGT+AGG | - | chr4_1:12983497-12983516 | Msa0536170:intron | 50.0% | |
| !! | GGTCACAATGGTGGGTACAA+TGG | - | chr4_1:12983539-12983558 | Msa0536170:intron | 50.0% |
| ! | AGAGTTGACCAAGAAGCGCG+TGG | - | chr4_1:12980264-12980283 | Msa0536170:intron | 55.0% |
| TCACTGGGATTGTGGTCGAG+AGG | - | chr4_1:12980667-12980686 | Msa0536170:intron | 55.0% | |
| TGGTCGAGAGGAAGTGAGAG+CGG | - | chr4_1:12980679-12980698 | Msa0536170:intron | 55.0% | |
| ! | ACTTGGTAGCCCCTAGACGT+AGG | - | chr4_1:12980828-12980847 | Msa0536170:intron | 55.0% |
| TAGGGGCTACCTACGTCTAG+GGG | + | chr4_1:12980840-12980859 | None:intergenic | 55.0% | |
| CTAGGGGCTACCTACGTCTA+GGG | + | chr4_1:12980841-12980860 | None:intergenic | 55.0% | |
| TCTAGGGGCTACCTACGTCT+AGG | + | chr4_1:12980842-12980861 | None:intergenic | 55.0% | |
| AGGCAAGCATGTGCCTAAGC+TGG | - | chr4_1:12981929-12981948 | Msa0536170:intron | 55.0% | |
| TCGGAACAGTATCCTCGTCG+AGG | - | chr4_1:12982282-12982301 | Msa0536170:intron | 55.0% | |
| CAGTATCCTCGTCGAGGCTA+AGG | - | chr4_1:12982288-12982307 | Msa0536170:intron | 55.0% | |
| GTATCCTCGTCGAGGCTAAG+GGG | - | chr4_1:12982290-12982309 | Msa0536170:intron | 55.0% | |
| ! | AGAACATTGGGGCGCCAATC+AGG | + | chr4_1:12982354-12982373 | None:intergenic | 55.0% |
| TCCTCCCGTCGAAAACCTCA+TGG | + | chr4_1:12983306-12983325 | None:intergenic | 55.0% | |
| ! | ATGAGGTTTTCGACGGGAGG+AGG | - | chr4_1:12983305-12983324 | Msa0536170:intron | 55.0% |
| ! | AGGGGAGGAGGTGGATTTAG+TGG | - | chr4_1:12983332-12983351 | Msa0536170:intron | 55.0% |
| ! | GGAGGAGGTGGATTTAGTGG+AGG | - | chr4_1:12983335-12983354 | Msa0536170:intron | 55.0% |
| ! | TTTAGTGGAGGTGCAAGCGG+AGG | - | chr4_1:12983347-12983366 | Msa0536170:intron | 55.0% |
| TTTGGAGGTGGAGGAAAGGG+AGG | - | chr4_1:12983377-12983396 | Msa0536170:intron | 55.0% | |
| ATCTGGAGGAGGTGGAGGAA+AGG | - | chr4_1:12983406-12983425 | Msa0536170:intron | 55.0% | |
| TCTGGAGGAGGTGGAGGAAA+GGG | - | chr4_1:12983407-12983426 | Msa0536170:intron | 55.0% | |
| AGGAAAGGGAGGAGGTGGAA+TGG | - | chr4_1:12983421-12983440 | Msa0536170:intron | 55.0% | |
| GGAAAGGGAGGAGGTGGAAT+GGG | - | chr4_1:12983422-12983441 | Msa0536170:intron | 55.0% | |
| GAAGGGATTTGGAGGAGGAG+TGG | - | chr4_1:12983454-12983473 | Msa0536170:intron | 55.0% | |
| GTTGCCAATCGCGGTCACAA+TGG | - | chr4_1:12983527-12983546 | Msa0536170:intron | 55.0% | |
| CCAATCGCGGTCACAATGGT+GGG | - | chr4_1:12983531-12983550 | Msa0536170:intron | 55.0% | |
| GCAAGGTTCGGGGTTCAACC+CGG | - | chr4_1:12979998-12980017 | Msa0536170:intron | 60.0% | |
| GGTCGAGAGGAAGTGAGAGC+GGG | - | chr4_1:12980680-12980699 | Msa0536170:intron | 60.0% | |
| CGTCTAGGGGCTACCAAGTC+AGG | + | chr4_1:12980827-12980846 | None:intergenic | 60.0% | |
| CGTAGGTAGCCCCTAGACGT+AGG | - | chr4_1:12980845-12980864 | Msa0536170:intron | 60.0% | |
| TTAGCCCCTTAGCCTCGACG+AGG | + | chr4_1:12982297-12982316 | None:intergenic | 60.0% | |
| TGTCAGTGAGGTCTCGAGCG+TGG | - | chr4_1:12982319-12982338 | Msa0536170:intron | 60.0% | |
| GTCAGTGAGGTCTCGAGCGT+GGG | - | chr4_1:12982320-12982339 | Msa0536170:intron | 60.0% | |
| ! | GCCATGAGGTTTTCGACGGG+AGG | - | chr4_1:12983302-12983321 | Msa0536170:intron | 60.0% |
| ! | AGGTTTTCGACGGGAGGAGG+TGG | - | chr4_1:12983308-12983327 | Msa0536170:intron | 60.0% |
| TTTCGACGGGAGGAGGTGGA+AGG | - | chr4_1:12983312-12983331 | Msa0536170:intron | 60.0% | |
| TTCGACGGGAGGAGGTGGAA+GGG | - | chr4_1:12983313-12983332 | Msa0536170:intron | 60.0% | |
| ! | GCAAGCGGAGGAGGTGGATT+TGG | - | chr4_1:12983359-12983378 | Msa0536170:intron | 60.0% |
| ! | AGCGGAGGAGGTGGATTTGG+AGG | - | chr4_1:12983362-12983381 | Msa0536170:intron | 60.0% |
| ! | GGAGGAGGTGGATTTGGAGG+TGG | - | chr4_1:12983365-12983384 | Msa0536170:intron | 60.0% |
| ! | GGAGGTGGATTTGGAGGTGG+AGG | - | chr4_1:12983368-12983387 | Msa0536170:intron | 60.0% |
| GGAAAGGGAGGAGGTGGATC+TGG | - | chr4_1:12983389-12983408 | Msa0536170:intron | 60.0% | |
| AAGGGAGGAGGTGGATCTGG+AGG | - | chr4_1:12983392-12983411 | Msa0536170:intron | 60.0% | |
| AAGGGAGGAGGTGGAATGGG+AGG | - | chr4_1:12983425-12983444 | Msa0536170:intron | 60.0% | |
| AGGGAGGAGGTGGAATGGGA+GGG | - | chr4_1:12983426-12983445 | Msa0536170:intron | 60.0% | |
| GGTGGGAAGGGATTTGGAGG+AGG | - | chr4_1:12983449-12983468 | Msa0536170:intron | 60.0% | |
| GGATTTGGAGGAGGAGTGGC+AGG | - | chr4_1:12983458-12983477 | Msa0536170:intron | 60.0% | |
| TTTGGAGGAGGAGTGGCAGG+TGG | - | chr4_1:12983461-12983480 | Msa0536170:intron | 60.0% | |
| TCCACCGCCGACAATTCCAC+CGG | + | chr4_1:12983492-12983511 | None:intergenic | 60.0% | |
| GTCGGCGGTGGAATTGTAGG+CGG | - | chr4_1:12983500-12983519 | Msa0536170:intron | 60.0% | |
| GCCAATCGCGGTCACAATGG+TGG | - | chr4_1:12983530-12983549 | Msa0536170:intron | 60.0% | |
| CCCACCATTGTGACCGCGAT+TGG | + | chr4_1:12983534-12983553 | None:intergenic | 60.0% | |
| TCGACGGGAGGAGGTGGAAG+GGG | - | chr4_1:12983314-12983333 | Msa0536170:intron | 65.0% | |
| ! | AGTGGAGGTGCAAGCGGAGG+AGG | - | chr4_1:12983350-12983369 | Msa0536170:intron | 65.0% |
| GGAGGTGGAGGAAAGGGAGG+AGG | - | chr4_1:12983380-12983399 | Msa0536170:intron | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | - | chr4_1:12983383-12983402 | Msa0536170:intron | 65.0% | |
| GGAGGAGGTGGATCTGGAGG+AGG | - | chr4_1:12983395-12983414 | Msa0536170:intron | 65.0% | |
| GGAGGTGGATCTGGAGGAGG+TGG | - | chr4_1:12983398-12983417 | Msa0536170:intron | 65.0% | |
| GGTGGATCTGGAGGAGGTGG+AGG | - | chr4_1:12983401-12983420 | Msa0536170:intron | 65.0% | |
| GGAGGAGGTGGAGGAAAGGG+AGG | - | chr4_1:12983410-12983429 | Msa0536170:intron | 65.0% | |
| GGAGGTGGAGGAAAGGGAGG+AGG | - | chr4_1:12983380-12983399 | Msa0536170:intron | 65.0% | |
| GGTGGAGGAAAGGGAGGAGG+TGG | - | chr4_1:12983383-12983402 | Msa0536170:intron | 65.0% | |
| GGGAGGAGGTGGAATGGGAG+GGG | - | chr4_1:12983427-12983446 | Msa0536170:intron | 65.0% | |
| GGAGGAGGTGGAATGGGAGG+GGG | - | chr4_1:12983428-12983447 | Msa0536170:intron | 65.0% | |
| GAGGTGGAATGGGAGGGGGT+GGG | - | chr4_1:12983432-12983451 | Msa0536170:intron | 65.0% | |
| TGGAATGGGAGGGGGTGGGA+AGG | - | chr4_1:12983436-12983455 | Msa0536170:intron | 65.0% | |
| GGAATGGGAGGGGGTGGGAA+GGG | - | chr4_1:12983437-12983456 | Msa0536170:intron | 65.0% | |
| GGAGGGGGTGGGAAGGGATT+TGG | - | chr4_1:12983443-12983462 | Msa0536170:intron | 65.0% | |
| GGGGGTGGGAAGGGATTTGG+AGG | - | chr4_1:12983446-12983465 | Msa0536170:intron | 65.0% | |
| AGGAGGAGTGGCAGGTGGAG+CGG | - | chr4_1:12983466-12983485 | Msa0536170:intron | 65.0% | |
| GGAGCGGCCGGTGGAATTGT+CGG | - | chr4_1:12983482-12983501 | Msa0536170:intron | 65.0% | |
| TGAGGTCTCGAGCGTGGGCC+AGG | - | chr4_1:12982325-12982344 | Msa0536170:intron | 70.0% | |
| GAGGTCTCGAGCGTGGGCCA+GGG | - | chr4_1:12982326-12982345 | Msa0536170:intron | 70.0% | |
| CGTGGGCCAGGGCTCCTGAT+TGG | - | chr4_1:12982337-12982356 | Msa0536170:intron | 70.0% | |
| ACGGGAGGAGGTGGAAGGGG+AGG | - | chr4_1:12983317-12983336 | Msa0536170:intron | 70.0% | |
| GGAGGAGGTGGAAGGGGAGG+AGG | - | chr4_1:12983320-12983339 | Msa0536170:intron | 70.0% | |
| GGAGGTGGAAGGGGAGGAGG+TGG | - | chr4_1:12983323-12983342 | Msa0536170:intron | 70.0% | |
| ! | GGAGGTGCAAGCGGAGGAGG+TGG | - | chr4_1:12983353-12983372 | Msa0536170:intron | 70.0% |
| GGAGGTGGAATGGGAGGGGG+TGG | - | chr4_1:12983431-12983450 | Msa0536170:intron | 70.0% | |
| GCGGCCGGTGGAATTGTCGG+CGG | - | chr4_1:12983485-12983504 | Msa0536170:intron | 70.0% | |
| GCCGGTGGAATTGTCGGCGG+TGG | - | chr4_1:12983488-12983507 | Msa0536170:intron | 70.0% | |
| GGCGGCGCAGTTGCCAATCG+CGG | - | chr4_1:12983518-12983537 | Msa0536170:intron | 70.0% | |
| ! | GGGGCGCCAATCAGGAGCCC+TGG | + | chr4_1:12982346-12982365 | None:intergenic | 75.0% |
| GGAGTGGCAGGTGGAGCGGC+CGG | - | chr4_1:12983470-12983489 | Msa0536170:intron | 75.0% | |
| ! | GTGGCAGGTGGAGCGGCCGG+TGG | - | chr4_1:12983473-12983492 | Msa0536170:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 12978936 | 12983775 | 12978936 | ID=Msa0536170;Name=Msa0536170 |
| chr4_1 | mRNA | 12978936 | 12983775 | 12978936 | ID=Msa0536170-mRNA-1;Parent=Msa0536170;Name=Msa0536170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.4|0.8|0.25|0|5|129|167 |
| chr4_1 | exon | 12978936 | 12979288 | 12978936 | ID=Msa0536170-mRNA-1:exon:4156;Parent=Msa0536170-mRNA-1 |
| chr4_1 | exon | 12979355 | 12979510 | 12979355 | ID=Msa0536170-mRNA-1:exon:4155;Parent=Msa0536170-mRNA-1 |
| chr4_1 | exon | 12979629 | 12979740 | 12979629 | ID=Msa0536170-mRNA-1:exon:4154;Parent=Msa0536170-mRNA-1 |
| chr4_1 | exon | 12979815 | 12979820 | 12979815 | ID=Msa0536170-mRNA-1:exon:4153;Parent=Msa0536170-mRNA-1 |
| chr4_1 | exon | 12983770 | 12983775 | 12983770 | ID=Msa0536170-mRNA-1:exon:4152;Parent=Msa0536170-mRNA-1 |
| chr4_1 | CDS | 12983770 | 12983775 | 12983770 | ID=Msa0536170-mRNA-1:cds;Parent=Msa0536170-mRNA-1 |
| chr4_1 | CDS | 12979815 | 12979820 | 12979815 | ID=Msa0536170-mRNA-1:cds;Parent=Msa0536170-mRNA-1 |
| chr4_1 | CDS | 12979629 | 12979740 | 12979629 | ID=Msa0536170-mRNA-1:cds;Parent=Msa0536170-mRNA-1 |
| chr4_1 | CDS | 12979355 | 12979510 | 12979355 | ID=Msa0536170-mRNA-1:cds;Parent=Msa0536170-mRNA-1 |
| chr4_1 | CDS | 12979065 | 12979288 | 12979065 | ID=Msa0536170-mRNA-1:cds;Parent=Msa0536170-mRNA-1 |
| chr4_1 | three_prime_UTR | 12978936 | 12979064 | 12978936 | ID=Msa0536170-mRNA-1:three_prime_utr;Parent=Msa0536170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
