AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628130 MtrunA17_Chr4g0003971 87.902 901 41 3 1 864 527 1396 0.0 1585
Msa0628130 MtrunA17_Chr4g0003971 21.908 566 362 16 314 807 156 713 6.04e-25 112
Msa0628130 MtrunA17_Chr4g0003981 73.918 901 196 4 1 864 539 1437 0.0 1361
Msa0628130 MtrunA17_Chr4g0003981 22.554 603 368 17 282 805 140 722 1.19e-24 111
Msa0628130 MtrunA17_Chr2g0332241 70.267 898 231 5 1 864 533 1428 0.0 1313
Msa0628130 MtrunA17_Chr2g0332241 21.986 564 360 14 316 807 164 719 1.10e-25 114
Msa0628130 MtrunA17_Chr2g0332211 70.156 898 234 4 1 864 614 1511 0.0 1312
Msa0628130 MtrunA17_Chr2g0332221 70.045 898 232 4 1 864 533 1427 0.0 1311
Msa0628130 MtrunA17_Chr2g0332221 21.685 558 358 13 319 805 167 716 6.10e-26 115
Msa0628130 MtrunA17_Chr7g0262231 63.079 929 278 6 1 864 528 1456 0.0 1222
Msa0628130 MtrunA17_Chr7g0262231 24.214 636 371 20 314 860 157 770 9.48e-30 127
Msa0628130 MtrunA17_Chr7g0262241 61.987 926 290 6 1 864 528 1453 0.0 1191
Msa0628130 MtrunA17_Chr7g0262241 23.659 634 377 20 314 860 157 770 2.07e-26 117
Msa0628130 MtrunA17_Chr1g0148841 62.065 920 289 5 1 864 532 1447 0.0 1184
Msa0628130 MtrunA17_Chr1g0148841 22.857 560 353 15 317 805 164 715 3.39e-22 103
Msa0628130 MtrunA17_Chr7g0261951 62.270 925 288 5 1 864 528 1452 0.0 1173
Msa0628130 MtrunA17_Chr7g0261951 24.216 574 339 19 314 807 157 714 3.64e-27 119
Msa0628130 MtrunA17_Chr7g0262221 60.529 945 275 6 1 864 511 1438 0.0 1173
Msa0628130 MtrunA17_Chr7g0262221 26.531 441 275 12 314 720 158 583 1.78e-26 117
Msa0628130 MtrunA17_Chr7g0261981 63.194 883 304 5 1 864 528 1408 0.0 1172
Msa0628130 MtrunA17_Chr7g0261981 23.693 574 342 17 314 807 157 714 5.42e-26 115
Msa0628130 MtrunA17_Chr7g0261971 61.405 925 296 5 1 864 524 1448 0.0 1170
Msa0628130 MtrunA17_Chr7g0261971 23.909 573 342 17 314 807 153 710 1.29e-26 117
Msa0628130 MtrunA17_Chr4g0004021 76.119 737 162 3 1 726 537 1270 0.0 1132
Msa0628130 MtrunA17_Chr4g0004021 22.496 569 350 15 314 805 166 720 1.17e-23 107
Msa0628130 MtrunA17_Chr1g0148811 60.738 894 308 6 13 864 532 1424 0.0 1122
Msa0628130 MtrunA17_Chr1g0148811 22.695 564 355 15 314 805 149 703 4.16e-22 102
Msa0628130 MtrunA17_Chr3g0138261 60.349 918 295 8 4 864 535 1440 0.0 1116
Msa0628130 MtrunA17_Chr3g0138261 22.857 560 353 14 317 805 164 715 1.07e-28 124
Msa0628130 MtrunA17_Chr7g0262261 59.781 915 292 6 1 864 499 1388 0.0 1104
Msa0628130 MtrunA17_Chr7g0262261 22.520 635 373 20 319 860 133 741 3.78e-27 119
Msa0628130 MtrunA17_Chr7g0262261 45.918 98 50 2 770 864 1527 1624 8.54e-21 99.0
Msa0628130 MtrunA17_Chr7g0262251 58.556 900 295 4 1 847 523 1397 0.0 1099
Msa0628130 MtrunA17_Chr7g0262251 23.878 557 329 16 319 805 175 706 2.05e-29 126
Msa0628130 MtrunA17_Chr7g0265981 57.381 901 340 4 8 864 557 1457 0.0 1055
Msa0628130 MtrunA17_Chr7g0265981 23.529 561 344 16 319 805 184 733 6.84e-22 102
Msa0628130 MtrunA17_Chr1g0171351 54.095 928 361 6 1 864 542 1468 0.0 1038
Msa0628130 MtrunA17_Chr1g0171351 23.322 566 339 20 319 805 176 725 9.50e-26 114
Msa0628130 MtrunA17_Chr7g0265971 56.494 924 338 7 1 864 544 1463 0.0 1037
Msa0628130 MtrunA17_Chr7g0265971 22.898 559 350 16 319 805 178 727 4.77e-23 105
Msa0628130 MtrunA17_Chr4g0062871 56.009 907 352 6 1 864 516 1418 0.0 1035
Msa0628130 MtrunA17_Chr4g0062871 23.036 560 340 19 314 796 145 690 1.24e-23 107
Msa0628130 MtrunA17_Chr1g0198291 55.410 915 356 6 1 864 555 1468 0.0 1029
Msa0628130 MtrunA17_Chr1g0198291 24.161 447 286 11 319 720 189 627 3.00e-22 103
Msa0628130 MtrunA17_Chr2g0331081 55.423 922 353 7 1 864 545 1466 0.0 999
Msa0628130 MtrunA17_Chr2g0331081 22.886 686 422 20 207 796 45 719 2.08e-26 117
Msa0628130 MtrunA17_Chr8g0340651 53.921 931 356 6 7 864 550 1480 0.0 989
Msa0628130 MtrunA17_Chr8g0340651 23.239 568 341 20 316 804 175 726 1.35e-24 110
Msa0628130 MtrunA17_Chr7g0262321 54.314 904 350 9 1 864 251 1131 0.0 948
Msa0628130 MtrunA17_Chr7g0262321 23.356 441 276 12 419 809 17 445 1.31e-13 75.1
Msa0628130 MtrunA17_Chr7g0265961 51.732 895 347 6 1 864 548 1388 0.0 935
Msa0628130 MtrunA17_Chr7g0265961 22.842 556 334 16 319 795 182 721 9.27e-27 118
Msa0628130 MtrunA17_Chr5g0429871 52.265 905 381 8 4 864 348 1245 0.0 917
Msa0628130 MtrunA17_Chr5g0429871 22.500 520 316 13 361 805 21 528 4.14e-26 115
Msa0628130 MtrunA17_Chr3g0104621 49.624 931 393 9 4 864 424 1348 0.0 893
Msa0628130 MtrunA17_Chr3g0104621 23.592 568 338 16 317 805 54 604 6.16e-28 121
Msa0628130 MtrunA17_Chr0c20g0493841 48.283 903 421 9 2 864 535 1431 0.0 855
Msa0628130 MtrunA17_Chr0c20g0493841 24.598 622 376 21 314 856 163 770 4.59e-30 128
Msa0628130 MtrunA17_Chr7g0265991 58.216 639 226 5 267 864 6 644 0.0 763
Msa0628130 MtrunA17_Chr4g0069211 50.951 526 240 6 2 515 523 1042 2.00e-170 522
Msa0628130 MtrunA17_Chr4g0069211 23.520 625 368 24 314 856 162 758 4.35e-25 112
Msa0628130 MtrunA17_Chr7g0215001 61.702 376 96 1 467 794 1 376 1.49e-165 486
Msa0628130 MtrunA17_Chr6g0472481 77.328 247 44 1 307 541 1 247 1.70e-128 386
Msa0628130 MtrunA17_Chr4g0069221 44.415 376 181 3 517 864 1 376 2.10e-105 330
Msa0628130 MtrunA17_Chr4g0004001 67.500 160 50 1 707 864 29 188 3.05e-73 238
Msa0628130 MtrunA17_Chr7g0238421 51.538 260 85 4 327 586 12 230 5.99e-71 233
Msa0628130 MtrunA17_Chr7g0266001 47.561 246 115 1 1 232 429 674 1.06e-70 247
Msa0628130 MtrunA17_Chr7g0266001 22.898 559 350 15 319 805 63 612 7.31e-23 104
Msa0628130 MtrunA17_Chr8g0390471 79.000 100 21 0 318 417 4 103 1.97e-49 169
Msa0628130 MtrunA17_Chr5g0408061 28.850 461 266 15 289 719 44 472 2.59e-48 182
Msa0628130 MtrunA17_Chr2g0316301 28.652 534 300 16 319 806 73 571 5.40e-48 181
Msa0628130 MtrunA17_Chr1g0213091 24.262 610 363 14 282 807 66 660 1.94e-47 181
Msa0628130 MtrunA17_Chr6g0477811 26.246 602 363 18 319 858 66 648 2.21e-47 180
Msa0628130 MtrunA17_Chr1g0198931 28.463 527 316 18 236 719 5 513 2.32e-47 180
Msa0628130 MtrunA17_Chr4g0039261 26.992 615 359 19 257 815 2 582 4.11e-47 179
Msa0628130 MtrunA17_Chr4g0050221 28.428 598 357 23 314 858 26 605 4.33e-47 178
Msa0628130 MtrunA17_Chr4g0050251 26.667 600 358 22 319 858 73 650 5.41e-47 179
Msa0628130 MtrunA17_Chr1g0176441 27.244 624 361 18 286 852 143 730 1.99e-46 178
Msa0628130 MtrunA17_Chr4g0039251 27.900 638 343 23 249 815 33 624 2.42e-46 177
Msa0628130 MtrunA17_Chr1g0208391 27.704 527 328 14 319 805 93 606 8.62e-46 176
Msa0628130 MtrunA17_Chr8g0359931 29.703 505 277 21 253 722 2 463 1.00e-45 174
Msa0628130 MtrunA17_Chr1g0200651 26.886 517 317 12 240 719 3 495 2.80e-45 173
Msa0628130 MtrunA17_Chr7g0263351 24.483 580 367 10 289 805 82 653 1.03e-42 167
Msa0628130 MtrunA17_Chr1g0199471 35.246 244 152 3 319 562 517 754 4.58e-42 166
Msa0628130 MtrunA17_Chr1g0176451 26.610 590 340 17 319 852 23 575 9.33e-42 162
Msa0628130 MtrunA17_Chr3g0102731 34.740 308 169 10 289 577 54 348 1.36e-41 161
Msa0628130 MtrunA17_Chr2g0318061 30.366 382 233 12 291 656 2 366 1.39e-41 156
Msa0628130 MtrunA17_Chr7g0264441 33.585 265 158 2 319 565 279 543 3.61e-41 163
Msa0628130 MtrunA17_Chr4g0050291 25.733 614 362 19 311 857 42 628 6.83e-41 160
Msa0628130 MtrunA17_Chr8g0393191 31.930 285 186 3 290 574 41 317 8.17e-41 161
Msa0628130 MtrunA17_Chr7g0267971 26.894 528 314 14 319 789 160 672 1.06e-40 160
Msa0628130 MtrunA17_Chr5g0446901 33.333 300 182 8 319 614 109 394 4.21e-40 157
Msa0628130 MtrunA17_Chr8g0384391 23.834 579 373 16 286 813 25 586 1.74e-39 155
Msa0628130 MtrunA17_Chr1g0180971 33.209 268 161 2 316 565 410 677 1.24e-38 154
Msa0628130 MtrunA17_Chr1g0202431 24.162 567 355 20 285 806 8 544 2.01e-38 152
Msa0628130 MtrunA17_Chr5g0411621 33.212 274 168 5 292 562 25 286 1.30e-37 150
Msa0628130 MtrunA17_Chr4g0028621 36.066 244 150 2 319 562 507 744 2.34e-37 151
Msa0628130 MtrunA17_Chr4g0050261 39.252 214 123 4 319 528 73 283 1.08e-36 148
Msa0628130 MtrunA17_Chr4g0065231 26.186 527 336 17 319 810 75 583 1.67e-35 144
Msa0628130 MtrunA17_Chr4g0026731 25.825 515 296 16 361 805 22 520 1.98e-35 143
Msa0628130 MtrunA17_Chr3g0130331 23.290 541 357 15 319 813 58 586 5.11e-34 139
Msa0628130 MtrunA17_Chr4g0050201 26.812 552 326 22 361 857 5 533 2.34e-32 132
Msa0628130 MtrunA17_Chr4g0039231 25.047 535 289 14 380 815 20 541 5.31e-31 130
Msa0628130 MtrunA17_Chr2g0327241 26.452 465 302 16 302 744 111 557 3.29e-25 112
Msa0628130 MtrunA17_Chr8g0390481 82.143 56 10 0 448 503 7 62 2.41e-24 97.1
Msa0628130 MtrunA17_Chr3g0093331 34.359 195 123 5 338 529 17 209 1.67e-23 100
Msa0628130 MtrunA17_Chr8g0390461 32.090 134 74 2 164 281 2 134 2.79e-16 77.4
Msa0628130 MtrunA17_Chr4g0047831 39.024 82 50 0 436 517 1 82 8.83e-13 65.1
Msa0628130 MtrunA17_Chr7g0257341 31.053 190 107 6 300 475 541 720 4.95e-11 67.0
Msa0628130 MtrunA17_Chr7g0257341 25.836 329 170 18 187 501 1386 1654 5.96e-11 66.6
Msa0628130 MtrunA17_Chr3g0132711 29.843 191 109 7 320 501 210 384 6.98e-11 65.9
Msa0628130 MtrunA17_Chr1g0178481 30.806 211 130 9 319 523 396 596 9.77e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628130 AT1G15520.1 66.704 901 251 4 1 864 535 1423 0.0 1252
Msa0628130 AT1G15520.1 21.584 644 378 22 314 860 164 777 2.05e-25 114
Msa0628130 AT1G66950.1 56.891 907 340 4 1 864 556 1454 0.0 1082
Msa0628130 AT1G15520.2 70.137 730 195 3 1 719 535 1252 0.0 1070
Msa0628130 AT1G15520.2 21.894 644 376 22 314 860 164 777 6.40e-25 112
Msa0628130 AT2G36380.1 56.751 911 336 5 1 864 554 1453 0.0 1056
Msa0628130 AT2G36380.1 22.134 628 393 18 316 860 185 799 3.64e-24 110
Msa0628130 AT2G26910.1 55.740 906 358 4 1 864 516 1420 0.0 1053
Msa0628130 AT2G26910.1 25.347 576 331 19 311 805 142 699 5.36e-30 129
Msa0628130 AT3G16340.1 55.298 906 346 6 1 864 528 1416 0.0 1011
Msa0628130 AT3G16340.1 28.723 282 161 9 316 564 159 433 8.60e-23 105
Msa0628130 AT3G16340.2 55.298 906 346 6 1 864 523 1411 0.0 1010
Msa0628130 AT3G16340.2 28.369 282 157 10 316 564 159 428 7.87e-21 99.4
Msa0628130 AT1G59870.1 54.248 918 366 4 1 864 552 1469 0.0 990
Msa0628130 AT1G59870.1 24.021 562 344 18 316 804 183 734 1.19e-28 124
Msa0628130 AT1G15210.1 54.264 903 356 5 5 864 554 1442 0.0 987
Msa0628130 AT1G15210.1 23.009 565 348 15 316 805 181 733 1.97e-28 124
Msa0628130 AT2G29940.1 53.000 900 366 5 4 864 545 1426 0.0 970
Msa0628130 AT2G29940.1 23.726 569 344 16 314 805 170 725 8.87e-33 137
Msa0628130 AT3G30842.1 50.948 897 400 5 2 864 528 1418 0.0 922
Msa0628130 AT3G30842.1 22.913 563 355 13 314 805 156 710 2.54e-29 126
Msa0628130 AT3G53480.1 45.505 901 447 5 2 864 556 1450 0.0 843
Msa0628130 AT3G53480.1 23.040 625 382 22 314 856 184 791 9.17e-30 128
Msa0628130 AT2G37280.1 44.518 903 451 6 2 864 521 1413 0.0 829
Msa0628130 AT2G37280.1 23.840 625 377 21 314 855 149 757 3.64e-31 132
Msa0628130 AT2G37280.4 44.518 903 451 6 2 864 363 1255 0.0 829
Msa0628130 AT2G37280.4 23.394 607 366 21 332 855 9 599 1.16e-27 121
Msa0628130 AT2G37280.3 44.518 903 451 6 2 864 550 1442 0.0 828
Msa0628130 AT2G37280.3 22.936 654 376 22 314 855 149 786 9.63e-28 121
Msa0628130 AT4G15215.11 44.839 901 436 7 2 864 520 1397 0.0 806
Msa0628130 AT4G15215.11 26.500 600 341 20 314 827 148 733 3.99e-34 142
Msa0628130 AT4G15215.9 44.839 901 436 7 2 864 517 1394 0.0 806
Msa0628130 AT4G15215.9 26.500 600 341 20 314 827 145 730 4.06e-34 142
Msa0628130 AT4G15215.4 44.839 901 436 7 2 864 517 1394 0.0 806
Msa0628130 AT4G15215.4 26.500 600 341 20 314 827 145 730 4.06e-34 142
Msa0628130 AT4G15215.5 44.839 901 436 7 2 864 517 1394 0.0 806
Msa0628130 AT4G15215.5 26.500 600 341 20 314 827 145 730 4.06e-34 142
Msa0628130 AT4G15215.3 44.839 901 436 7 2 864 517 1394 0.0 806
Msa0628130 AT4G15215.3 26.500 600 341 20 314 827 145 730 4.06e-34 142
Msa0628130 AT4G15215.2 44.839 901 436 7 2 864 517 1394 0.0 806
Msa0628130 AT4G15215.2 26.500 600 341 20 314 827 145 730 4.06e-34 142
Msa0628130 AT4G15215.1 44.839 901 436 7 2 864 513 1390 0.0 806
Msa0628130 AT4G15215.1 26.667 600 333 21 314 827 148 726 6.17e-33 138
Msa0628130 AT4G15215.8 44.839 901 436 7 2 864 510 1387 0.0 805
Msa0628130 AT4G15215.8 26.667 600 333 21 314 827 145 723 6.11e-33 138
Msa0628130 AT4G15215.10 44.839 901 436 7 2 864 510 1387 0.0 805
Msa0628130 AT4G15215.10 26.667 600 333 21 314 827 145 723 6.11e-33 138
Msa0628130 AT4G15215.6 44.839 901 436 7 2 864 510 1387 0.0 805
Msa0628130 AT4G15215.6 26.667 600 333 21 314 827 145 723 6.11e-33 138
Msa0628130 AT4G15215.7 44.839 901 436 7 2 864 510 1387 0.0 805
Msa0628130 AT4G15215.7 26.667 600 333 21 314 827 145 723 6.11e-33 138
Msa0628130 AT4G15230.3 45.616 901 429 8 2 864 523 1400 0.0 805
Msa0628130 AT4G15230.3 25.784 574 324 21 314 805 151 704 4.28e-33 139
Msa0628130 AT4G15230.4 45.616 901 429 8 2 864 444 1321 0.0 805
Msa0628130 AT4G15230.4 25.784 574 324 21 314 805 72 625 3.16e-33 139
Msa0628130 AT4G15230.1 45.616 901 429 8 2 864 523 1400 0.0 805
Msa0628130 AT4G15230.1 25.784 574 324 21 314 805 151 704 4.28e-33 139
Msa0628130 AT4G15233.8 44.160 899 434 8 4 864 515 1383 0.0 788
Msa0628130 AT4G15233.8 23.002 613 372 19 316 852 152 740 1.00e-25 115
Msa0628130 AT4G15233.1 44.160 899 434 8 4 864 524 1392 0.0 788
Msa0628130 AT4G15233.1 23.491 613 378 18 316 852 152 749 2.34e-29 126
Msa0628130 AT4G15233.3 44.160 899 434 8 4 864 462 1330 0.0 788
Msa0628130 AT4G15233.3 22.771 628 392 19 316 864 90 703 1.80e-29 127
Msa0628130 AT4G15233.6 44.160 899 434 8 4 864 462 1330 0.0 788
Msa0628130 AT4G15233.6 22.771 628 392 19 316 864 90 703 1.80e-29 127
Msa0628130 AT4G15233.7 44.160 899 434 8 4 864 506 1374 0.0 787
Msa0628130 AT4G15233.7 24.706 595 375 18 316 852 152 731 1.42e-31 134
Msa0628130 AT4G15236.1 43.902 902 438 9 1 864 519 1390 0.0 780
Msa0628130 AT4G15236.1 23.322 566 348 15 314 805 148 701 3.84e-30 129
Msa0628130 AT2G37280.2 45.890 815 393 5 2 778 521 1325 0.0 769
Msa0628130 AT2G37280.2 23.840 625 377 21 314 855 149 757 5.74e-31 132
Msa0628130 AT4G15233.2 43.931 865 395 7 4 808 524 1358 0.0 753
Msa0628130 AT4G15233.2 23.491 613 378 18 316 852 152 749 2.03e-29 127
Msa0628130 AT4G15230.2 46.699 818 376 7 2 782 523 1317 0.0 749
Msa0628130 AT4G15230.2 25.784 574 324 21 314 805 151 704 4.52e-33 138
Msa0628130 AT4G15233.5 49.649 570 259 3 323 864 680 1249 0.0 585
Msa0628130 AT4G15233.5 39.076 238 134 2 4 231 444 680 2.00e-47 184
Msa0628130 AT4G15233.5 24.706 595 375 18 316 852 90 669 1.07e-31 134
Msa0628130 AT4G15233.5 22.941 170 116 5 26 187 1029 1191 7.53e-11 66.6
Msa0628130 AT4G15233.4 49.649 570 259 3 323 864 680 1249 0.0 585
Msa0628130 AT4G15233.4 39.076 238 134 2 4 231 444 680 2.00e-47 184
Msa0628130 AT4G15233.4 24.706 595 375 18 316 852 90 669 1.07e-31 134
Msa0628130 AT4G15233.4 22.941 170 116 5 26 187 1029 1191 7.53e-11 66.6
Msa0628130 AT2G01320.8 27.797 572 329 17 319 829 90 638 8.98e-52 192
Msa0628130 AT2G01320.5 27.797 572 329 17 319 829 90 638 8.98e-52 192
Msa0628130 AT2G01320.3 28.361 543 310 17 319 808 90 606 6.80e-51 191
Msa0628130 AT2G01320.2 28.361 543 310 17 319 808 90 606 7.05e-51 191
Msa0628130 AT2G01320.1 28.361 543 310 17 319 808 90 606 7.50e-51 191
Msa0628130 AT2G01320.4 28.361 543 310 17 319 808 90 606 7.50e-51 191
Msa0628130 AT2G37360.1 25.473 581 361 13 289 809 95 663 2.25e-49 187
Msa0628130 AT3G21090.1 28.268 612 340 19 319 858 45 629 2.72e-48 183
Msa0628130 AT2G01320.7 31.151 443 248 15 319 730 90 506 1.17e-47 178
Msa0628130 AT2G01320.6 31.151 443 248 15 319 730 90 506 1.17e-47 178
Msa0628130 AT3G55100.1 24.253 569 370 11 285 807 15 568 1.23e-47 181
Msa0628130 AT3G55100.2 24.253 569 370 11 285 807 15 568 1.23e-47 181
Msa0628130 AT3G25620.2 31.224 490 272 17 263 719 50 507 3.01e-47 180
Msa0628130 AT3G25620.1 33.721 430 219 18 263 656 50 449 1.10e-46 174
Msa0628130 AT1G71960.1 30.716 433 269 12 303 719 67 484 1.22e-46 178
Msa0628130 AT3G55090.1 22.789 588 376 12 289 810 70 645 1.51e-46 179
Msa0628130 AT1G17840.1 28.330 533 305 17 319 790 69 585 5.47e-46 176
Msa0628130 AT1G31770.1 26.569 478 315 13 260 719 21 480 6.33e-46 176
Msa0628130 AT3G55130.1 24.433 573 368 12 289 807 70 631 1.01e-45 176
Msa0628130 AT4G27420.1 29.783 460 268 16 288 719 33 465 2.09e-45 174
Msa0628130 AT2G39350.1 23.667 600 364 15 289 809 64 648 3.74e-45 174
Msa0628130 AT3G53510.1 26.394 538 335 12 318 809 125 647 5.97e-45 174
Msa0628130 AT1G53270.1 26.285 506 320 12 314 789 45 527 9.59e-45 171
Msa0628130 AT3G55110.1 23.944 568 370 13 289 807 60 614 1.29e-44 172
Msa0628130 AT2G13610.1 25.230 543 343 14 319 813 62 589 3.28e-44 170
Msa0628130 AT5G06530.2 27.817 568 319 16 286 789 151 691 5.39e-44 171
Msa0628130 AT5G06530.1 27.817 568 319 16 286 789 151 691 5.39e-44 171
Msa0628130 AT5G13580.1 24.185 583 368 14 289 809 65 635 2.64e-43 169
Msa0628130 AT1G53390.1 34.836 244 153 3 319 562 523 760 8.33e-43 169
Msa0628130 AT1G51500.1 27.036 577 337 16 319 830 44 601 1.29e-42 166
Msa0628130 AT5G06530.3 29.747 474 270 14 286 721 151 599 2.91e-42 165
Msa0628130 AT3G13220.1 28.814 472 277 16 319 750 106 558 1.18e-41 163
Msa0628130 AT2G37010.2 33.451 284 170 6 291 562 461 737 7.90e-40 159
Msa0628130 AT2G37010.1 33.451 284 170 6 291 562 461 737 7.90e-40 159
Msa0628130 AT5G06530.4 28.910 422 246 10 336 721 1 404 7.59e-39 152
Msa0628130 AT5G52860.1 25.096 522 322 18 319 810 44 526 2.10e-35 143
Msa0628130 AT5G60740.1 34.836 244 153 2 319 562 515 752 6.91e-35 144
Msa0628130 AT1G51460.1 38.095 210 126 3 319 527 30 236 1.31e-32 135
Msa0628130 AT4G25750.1 23.466 554 352 19 288 810 2 514 2.69e-32 133
Msa0628130 AT5G19410.2 23.801 542 345 17 319 817 75 591 1.76e-30 128
Msa0628130 AT5G19410.1 23.801 542 345 17 319 817 66 582 1.96e-30 128
Msa0628130 AT2G28070.2 30.175 285 181 9 241 520 61 332 3.58e-24 109
Msa0628130 AT2G28070.1 30.175 285 181 9 241 520 61 332 3.58e-24 109
Msa0628130 AT2G41700.2 29.000 200 120 5 288 475 456 645 5.51e-11 67.4
Msa0628130 AT2G41700.1 29.000 200 120 5 288 475 526 715 6.27e-11 67.0

Find 181 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTTACCTCCAAATATT+TGG 0.125691 4_3:-8716375 None:intergenic
TTCCTCACTTACTATGTAAT+TGG 0.159819 4_3:+8716345 Msa0628130:CDS
TTGATAATGCTCATGTTTAA+TGG 0.161258 4_3:+8716177 Msa0628130:CDS
CACTTGTAGATGCTTCTATT+TGG 0.196114 4_3:+8716319 Msa0628130:CDS
GGATTATTTGCATCACAATT+TGG 0.212511 4_3:+8720486 Msa0628130:CDS
TTGGATTTGATCCAAATATT+TGG 0.219155 4_3:+8716364 Msa0628130:CDS
GCAGTAAATACTAACCTTTC+TGG 0.220734 4_3:-8718293 None:intergenic
TCGTCAAATGTGATAGAATA+TGG 0.244030 4_3:-8717546 None:intergenic
ATTGATGGACAATCTTATTT+TGG 0.248964 4_3:+8716138 Msa0628130:CDS
ATGATTATTGCTTACATAAC+TGG 0.251485 4_3:+8716577 Msa0628130:CDS
AACTACTTTGATGGATGTTT+TGG 0.254491 4_3:+8718081 Msa0628130:CDS
TCACTGTTTCTTTGTGCATA+TGG 0.259124 4_3:-8716116 None:intergenic
TAAGCAACTTATAGCAGAAT+TGG 0.264657 4_3:+8719456 Msa0628130:CDS
ACTGCAGCAATATGGTAATT+TGG 0.265802 4_3:-8720258 None:intergenic
CCTGTAGCTTGGAGCTTATA+TGG 0.270107 4_3:+8720465 Msa0628130:CDS
ATATTAAGCACTGGTGGATT+TGG 0.270178 4_3:+8716771 Msa0628130:CDS
ATTTCTTGATTTCTATCATT+TGG 0.279551 4_3:-8717215 None:intergenic
CCCAGTGTCACGTTTGAATA+TGG 0.281077 4_3:-8716928 None:intergenic
ACTGGTGGATTTGGGGTTAC+TGG 0.282832 4_3:+8716780 Msa0628130:CDS
CTCACAATAGCCAGAGATTC+TGG 0.283000 4_3:-8718179 None:intergenic
TTACCATATTGCTGCAGTTT+TGG 0.284802 4_3:+8720263 Msa0628130:CDS
TGATGTTTGGAACAATGTTT+TGG 0.288482 4_3:+8719638 Msa0628130:CDS
GTTGTACCGCGGCTGAATTT+TGG 0.291133 4_3:-8719881 None:intergenic
ATAGGAGTTGGTGCATTAAT+AGG 0.295498 4_3:+8717003 Msa0628130:CDS
AATACTAACCTTTCTGGTAT+TGG 0.300729 4_3:-8718287 None:intergenic
TGGAAATATAACAGACATAT+TGG 0.301234 4_3:+8720506 Msa0628130:CDS
GGCAGATTCCCTTGTCAAAA+AGG 0.302463 4_3:-8720804 None:intergenic
TATTAAGCACTGGTGGATTT+GGG 0.303250 4_3:+8716772 Msa0628130:CDS
TTCAGCTTGGCTTCGTTTAC+CGG 0.311336 4_3:+8718252 Msa0628130:CDS
GAAATATATGTTGGGCCATT+AGG 0.314352 4_3:+8719037 Msa0628130:CDS
ACTTCTAACATCCATGTTGC+TGG 0.325403 4_3:-8719242 None:intergenic
GGACTGTAGCAAAATTCTTT+TGG 0.338721 4_3:+8720166 Msa0628130:CDS
TCACACATGCATATTGGTAT+TGG 0.344093 4_3:+8716980 Msa0628130:CDS
CACTGTTTCTTTGTGCATAT+GGG 0.346097 4_3:-8716115 None:intergenic
ACTTGTAGATGCTTCTATTT+GGG 0.347048 4_3:+8716320 Msa0628130:CDS
CAATGAAAATAGTGCAGATT+TGG 0.348856 4_3:+8720748 Msa0628130:three_prime_UTR
AGGCTCGTCCATGAAAATTA+TGG 0.355007 4_3:-8718768 None:intergenic
GAAATTGAATTAACAGAATC+AGG 0.355790 4_3:+8717233 Msa0628130:CDS
GATTCTTCACACATGCATAT+TGG 0.356272 4_3:+8716974 Msa0628130:CDS
TCTATTGTCTAGAGTATTGA+AGG 0.370322 4_3:+8719191 Msa0628130:intron
TGTGGTGGAGTTGGTACTAT+TGG 0.370513 4_3:+8720436 Msa0628130:CDS
GAAGCATCTACAAGTGTAAC+AGG 0.371491 4_3:-8716312 None:intergenic
GGAAACAACGTTGGTCATAT+TGG 0.374893 4_3:+8719563 Msa0628130:CDS
GAATATATAAGAAGTTATTA+TGG 0.384713 4_3:+8720552 Msa0628130:CDS
ACTTTCATAGCATTGATGTT+TGG 0.386791 4_3:+8719625 Msa0628130:CDS
TCAATTGATCAAGTACTTTG+AGG 0.391166 4_3:+8719072 Msa0628130:CDS
TATAACAGACATATTGGAAA+TGG 0.399884 4_3:+8720512 Msa0628130:CDS
CTGATAAACCAGACAGCTAC+TGG 0.400488 4_3:+8716520 Msa0628130:CDS
GTATGCACAAAATGCTATAA+TGG 0.403214 4_3:+8716817 Msa0628130:CDS
ATGCCAAAACTGCAGCAATA+TGG 0.403221 4_3:-8720266 None:intergenic
TATATTTCAATTAAGTCATT+CGG 0.407787 4_3:-8720781 None:intergenic
GAAACATTTGCCAGAATCTC+TGG 0.408288 4_3:+8718169 Msa0628130:CDS
AAAACTAGTGGTTATATTGA+TGG 0.408814 4_3:+8718112 Msa0628130:CDS
TTCATGGACGAGCCTACATC+TGG 0.409796 4_3:+8718776 Msa0628130:CDS
AACTCACTAGTTGGTTTGCC+TGG 0.413756 4_3:+8718677 Msa0628130:CDS
TTGAAAATACTTACAGGTCT+TGG 0.415677 4_3:-8720333 None:intergenic
CACTGCCATCATACCATAGA+AGG 0.415688 4_3:-8720226 None:intergenic
ACCTAACAGCAGTGTATAAC+GGG 0.415693 4_3:-8719591 None:intergenic
GTGATAGAATATGGTTCAAA+AGG 0.420083 4_3:-8717537 None:intergenic
CATCACTAATTTATCTATGT+TGG 0.422548 4_3:-8720674 None:intergenic
CACAAAGAAACAGTGATTGA+TGG 0.424477 4_3:+8716123 Msa0628130:CDS
ACCCGTTATACACTGCTGTT+AGG 0.425568 4_3:+8719590 Msa0628130:CDS
AGTTAACCTCTTGCGTTGTT+CGG 0.427847 4_3:-8718717 None:intergenic
ATATATCAATACTTGGTTGA+TGG 0.433347 4_3:-8718880 None:intergenic
ATTCTAGCCGTGGGATGAAA+AGG 0.434157 4_3:+8717502 Msa0628130:CDS
AACTATTGCAGTCGAATTAG+TGG 0.435967 4_3:+8718736 Msa0628130:CDS
CAGCTTTGATAGGTGTTAGT+GGG 0.436449 4_3:+8718050 Msa0628130:CDS
GAATTGGGTAAACCTGCTAT+TGG 0.438084 4_3:+8719472 Msa0628130:CDS
TTGATAGGTGTTAGTGGGGC+TGG 0.441027 4_3:+8718055 Msa0628130:CDS
GATGTTCATTGAGGAAGTTA+TGG 0.448837 4_3:+8718628 Msa0628130:intron
GGTGTTCTGACAGCTTTGAT+AGG 0.451231 4_3:+8718040 Msa0628130:CDS
GCAACAATAAAAGAAGAATC+AGG 0.451554 4_3:+8717179 Msa0628130:CDS
GGTGGATTCATTCTTGCAAA+AGG 0.456230 4_3:+8716631 Msa0628130:CDS
GATTCAAATATATCAATACT+TGG 0.456688 4_3:-8718887 None:intergenic
CATAGATAAATTAGTGATGT+AGG 0.457284 4_3:+8720678 Msa0628130:exon
TGATTAGAATAACGACCTAA+TGG 0.463917 4_3:-8719052 None:intergenic
CCATATAAGCTCCAAGCTAC+AGG 0.468728 4_3:-8720465 None:intergenic
GGGCTTATGCTATTCCCTCA+TGG 0.469509 4_3:+8716277 Msa0628130:CDS
GGTAGGGAAATAAATATCCT+TGG 0.471165 4_3:-8719497 None:intergenic
AGTCCTTACTGTATTCAGCT+TGG 0.471348 4_3:+8718239 Msa0628130:CDS
CCAGCACAAGAAGTTGCATT+AGG 0.475388 4_3:+8719272 Msa0628130:CDS
AAGCAACTTATAGCAGAATT+GGG 0.478082 4_3:+8719457 Msa0628130:CDS
GTTCTTTCAACAGCTACTAC+TGG 0.479018 4_3:-8719903 None:intergenic
GAAAGATCAAGGTGTGATAG+AGG 0.479596 4_3:+8717973 Msa0628130:CDS
AACCTAACAGCAGTGTATAA+CGG 0.482748 4_3:-8719592 None:intergenic
GGCTGGTAAAACTACTTTGA+TGG 0.484261 4_3:+8718072 Msa0628130:CDS
TTCTAGCCGTGGGATGAAAA+GGG 0.487940 4_3:+8717503 Msa0628130:CDS
CTTCACCTTCTATGGTATGA+TGG 0.489900 4_3:+8720221 Msa0628130:CDS
GACGAAGTGGCGCACAAGAA+AGG 0.490518 4_3:+8720723 Msa0628130:three_prime_UTR
TACAAAATGCTGCTATAGCT+CGG 0.490727 4_3:-8716549 None:intergenic
ACAGCTTTGATAGGTGTTAG+TGG 0.491012 4_3:+8718049 Msa0628130:CDS
CATGAAAATTATGGATGGAT+TGG 0.493099 4_3:-8718759 None:intergenic
TTCAATGCTTGGCTTGCTTG+TGG 0.494571 4_3:+8719542 Msa0628130:CDS
GCCATATTCAAACGTGACAC+TGG 0.495087 4_3:+8716927 Msa0628130:CDS
GGAACAATCCAGTAGCTGTC+TGG 0.500261 4_3:-8716528 None:intergenic
GATTTGATCCAAATATTTGG+AGG 0.501805 4_3:+8716367 Msa0628130:CDS
TATAAAGATACTCACGATCA+AGG 0.502482 4_3:-8717071 None:intergenic
TATTACCTGTGCAAGTGCAT+AGG 0.503312 4_3:-8719970 None:intergenic
TCTCTTTGCTTAAAGAATGT+AGG 0.503790 4_3:-8716234 None:intergenic
AATAGTGCAGATTTGGCATC+TGG 0.511683 4_3:+8720755 Msa0628130:three_prime_UTR
ACTCAGAGACAGTAACTTGA+GGG 0.512621 4_3:-8718219 None:intergenic
CCTAATGCAACTTCTTGTGC+TGG 0.513595 4_3:-8719272 None:intergenic
GTGGTGGAGTTGGTACTATT+GGG 0.513901 4_3:+8720437 Msa0628130:CDS
ATTACCTGTGCAAGTGCATA+GGG 0.517582 4_3:-8719969 None:intergenic
CCGCTGAGGAACTCACTAGT+TGG 0.518316 4_3:+8718668 Msa0628130:CDS
AATTAGTGATGTAGGAAGAC+TGG 0.518394 4_3:+8720686 Msa0628130:exon
AAACTAGTGGTTATATTGAT+GGG 0.519565 4_3:+8718113 Msa0628130:CDS
ATATCCTTGGAACCAATAGC+AGG 0.520374 4_3:-8719484 None:intergenic
TTGAGCCCATCGCATTAGAC+AGG 0.522407 4_3:-8719830 None:intergenic
TAGTTATTCTTGTTGAAGAG+TGG 0.523437 4_3:+8719007 Msa0628130:intron
AATGATTGTGAGTATTGGGT+AGG 0.530062 4_3:-8719514 None:intergenic
GGAGGACGAGAAATATATGT+TGG 0.531016 4_3:+8719028 Msa0628130:CDS
TCACTTACTATTTGCGTCCG+AGG 0.535807 4_3:-8719663 None:intergenic
CCCATGAAGGATAAAATAAG+TGG 0.536471 4_3:-8716257 None:intergenic
ATTGGGCAAATCCTGTAGCT+TGG 0.537011 4_3:+8720454 Msa0628130:CDS
CTTCTAACATCCATGTTGCT+GGG 0.543210 4_3:-8719241 None:intergenic
ACTAGACCTGTCTAATGCGA+TGG 0.546208 4_3:+8719824 Msa0628130:CDS
AGTTGATTCCAATACCAGAA+AGG 0.546903 4_3:+8718279 Msa0628130:CDS
GAGGACGAGAAATATATGTT+GGG 0.548885 4_3:+8719029 Msa0628130:CDS
AGACAGTAACTTGAGGGGAG+TGG 0.550144 4_3:-8718213 None:intergenic
AATGGAAGATGTTACAGTGC+AGG 0.550941 4_3:+8720530 Msa0628130:CDS
CATGCATATTGGTATTGGAT+AGG 0.552646 4_3:+8716985 Msa0628130:CDS
GCTGTTGCTGATTCTAGCCG+TGG 0.556115 4_3:+8717492 Msa0628130:CDS
TAAACCTGCTATTGGTTCCA+AGG 0.556467 4_3:+8719480 Msa0628130:CDS
TGGCAGGAAATGAAAGATCA+AGG 0.557226 4_3:+8717962 Msa0628130:intron
TTATTCTTGTTGAAGAGTGG+AGG 0.559940 4_3:+8719010 Msa0628130:CDS
TGTGTCAACCGTGTTCCTAA+CGG 0.560994 4_3:-8718834 None:intergenic
TATGCGAACCGTTAGGAACA+CGG 0.561180 4_3:+8718826 Msa0628130:CDS
CTAGCATCTAATCCAGATGT+AGG 0.563717 4_3:-8718788 None:intergenic
CAATTGTTATGCGAACCGTT+AGG 0.566202 4_3:+8718819 Msa0628130:CDS
CCATATTCAAACGTGACACT+GGG 0.569207 4_3:+8716928 Msa0628130:CDS
GTTGAAAGACCGCTCACACC+AGG 0.569561 4_3:-8718695 None:intergenic
ATGATTGTGAGTATTGGGTA+GGG 0.569810 4_3:-8719513 None:intergenic
TGTAGGTGTTTCTGCAGCTG+TGG 0.570814 4_3:+8720590 Msa0628130:CDS
ATCAATACTTGGTTGATGGA+TGG 0.576224 4_3:-8718876 None:intergenic
GTATTGGAATCAACTTCTGC+CGG 0.582241 4_3:-8718271 None:intergenic
CTGTGCAAGTGCATAGGGTA+GGG 0.582746 4_3:-8719964 None:intergenic
CTAGACCTGTCTAATGCGAT+GGG 0.583417 4_3:+8719825 Msa0628130:CDS
AAGCCAAGCTGAATACAGTA+AGG 0.583866 4_3:-8718242 None:intergenic
ATCAAAGCTGTCAGAACACC+AGG 0.584914 4_3:-8718037 None:intergenic
GGAGTAAGTAAAATAAACGA+TGG 0.584940 4_3:+8719212 Msa0628130:CDS
ATCCAATTACATAGTAAGTG+AGG 0.585327 4_3:-8716347 None:intergenic
CTTCTATGGTATGATGGCAG+TGG 0.586350 4_3:+8720227 Msa0628130:CDS
GTTAGTGGTGCATTTAGACC+TGG 0.586426 4_3:+8718019 Msa0628130:CDS
CCGTGGGATGAAAAGGGGAA+TGG 0.586895 4_3:+8717509 Msa0628130:CDS
GAATGCCAGTGTGGTGGAGT+TGG 0.587682 4_3:+8720427 Msa0628130:CDS
CCTGTGCAAGTGCATAGGGT+AGG 0.590295 4_3:-8719965 None:intergenic
AATCAGATGATATTAAGCAC+TGG 0.591205 4_3:+8716762 Msa0628130:intron
TTTGTGGATTCCAGCACAAG+CGG 0.591608 4_3:+8719801 Msa0628130:intron
CAGATGATATTAAGCACTGG+TGG 0.598464 4_3:+8716765 Msa0628130:intron
TTTATAGAGAAAGAGCTGCT+GGG 0.601075 4_3:+8719931 Msa0628130:CDS
ATGCTTGTAGATGTTCATTG+AGG 0.603683 4_3:+8718619 Msa0628130:intron
TATTGGTATTGGATAGGAGT+TGG 0.607680 4_3:+8716991 Msa0628130:CDS
ATTAAGCACTGGTGGATTTG+GGG 0.608363 4_3:+8716773 Msa0628130:CDS
GTTCAATGTTTGAAATCACG+TGG 0.611849 4_3:+8716952 Msa0628130:CDS
AAGCGACGAGTTCTACTCAT+GGG 0.619140 4_3:-8720825 None:intergenic
ATCAAGGTGTGATAGAGGAT+AGG 0.624188 4_3:+8717978 Msa0628130:CDS
GACTCAGAGACAGTAACTTG+AGG 0.624203 4_3:-8718220 None:intergenic
GGAATAGCATAAGCCCATGA+AGG 0.626533 4_3:-8716270 None:intergenic
GTTGGTTTGCCTGGTGTGAG+CGG 0.626654 4_3:+8718686 Msa0628130:CDS
TTGGCTGGTAGGAAAACTAG+TGG 0.629717 4_3:+8718100 Msa0628130:CDS
CTTGCTTGTGGAAACAACGT+TGG 0.629960 4_3:+8719554 Msa0628130:CDS
AACAGAGAATGCCAGTGTGG+TGG 0.630483 4_3:+8720421 Msa0628130:intron
TGCGCGTATTGAAGACGAAG+TGG 0.632323 4_3:+8720710 Msa0628130:three_prime_UTR
TCTAGCCGTGGGATGAAAAG+GGG 0.633022 4_3:+8717504 Msa0628130:CDS
GTTAGGAACACGGTTGACAC+AGG 0.634502 4_3:+8718836 Msa0628130:CDS
GAAGCGACGAGTTCTACTCA+TGG 0.635125 4_3:-8720826 None:intergenic
TTTCAACCGAACAACGCAAG+AGG 0.637902 4_3:+8718711 Msa0628130:CDS
AGCTTTGATAGGTGTTAGTG+GGG 0.640664 4_3:+8718051 Msa0628130:CDS
CCTACCCTATGCACTTGCAC+AGG 0.646769 4_3:+8719965 Msa0628130:CDS
ATGGATATAACCCAGCAACA+TGG 0.648546 4_3:+8719231 Msa0628130:CDS
TCGTCCATGAAAATTATGGA+TGG 0.649367 4_3:-8718764 None:intergenic
CTGTTGCTGATTCTAGCCGT+GGG 0.652494 4_3:+8717493 Msa0628130:CDS
TAGTACCAACTCCACCACAC+TGG 0.657011 4_3:-8720432 None:intergenic
ACAATAAAAGAAGAATCAGG+AGG 0.668142 4_3:+8717182 Msa0628130:CDS
CTCAGAGACAGTAACTTGAG+GGG 0.668357 4_3:-8718218 None:intergenic
AGCTACTACTGGTTGTACCG+CGG 0.674929 4_3:-8719892 None:intergenic
TGGGGTCCAAAATTCAGCCG+CGG 0.692432 4_3:+8719875 Msa0628130:CDS
TAGTCGAGCTGAATCCGCTG+AGG 0.713338 4_3:+8718654 Msa0628130:CDS
GATAACAGAGAATGCCAGTG+TGG 0.743170 4_3:+8720418 Msa0628130:intron
CCAACTAGTGAGTTCCTCAG+CGG 0.746351 4_3:-8718668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAGAAAATTAGTAAA+TGG - chr4_3:8719170-8719189 None:intergenic 10.0%
!! TAATATACAATACTATTATA+TGG + chr4_3:8719345-8719364 Msa0628130:intron 10.0%
!! AAAAAAATGTAAAATAACGA+TGG - chr4_3:8717394-8717413 None:intergenic 15.0%
!!! AAACTTTTATTTTCTGTTTT+TGG + chr4_3:8717930-8717949 Msa0628130:intron 15.0%
!! ATTGTCATATTTATAGAATT+TGG - chr4_3:8719695-8719714 None:intergenic 15.0%
!!! AAATAAATGTATTTTCCTTA+TGG + chr4_3:8720013-8720032 Msa0628130:intron 15.0%
!! AAGTAAATAAATAAACCATA+AGG - chr4_3:8720031-8720050 None:intergenic 15.0%
!!! AAGTTATTTGATGTATTTTA+AGG - chr4_3:8720359-8720378 None:intergenic 15.0%
!! GAATATATAAGAAGTTATTA+TGG + chr4_3:8720552-8720571 Msa0628130:CDS 15.0%
!! TATATTTCAATTAAGTCATT+CGG - chr4_3:8720784-8720803 None:intergenic 15.0%
!!! TGATTGTATAGTGTTATTTA+TGG + chr4_3:8716441-8716460 Msa0628130:intron 20.0%
!!! ACTTCTTATAATTTTCACAT+TGG + chr4_3:8716609-8716628 Msa0628130:CDS 20.0%
!!! CTTCTTATAATTTTCACATT+GGG + chr4_3:8716610-8716629 Msa0628130:CDS 20.0%
!! ATTTCTTGATTTCTATCATT+TGG - chr4_3:8717218-8717237 None:intergenic 20.0%
!! ATTAAAATTGTCACCAAATT+TGG - chr4_3:8717366-8717385 None:intergenic 20.0%
!!! ACATTTTTTTAAGTGACTTA+TGG + chr4_3:8717404-8717423 Msa0628130:intron 20.0%
!!! CATTTTTTTAAGTGACTTAT+GGG + chr4_3:8717405-8717424 Msa0628130:intron 20.0%
!! ACAGTTAAAAAAAACCTATT+AGG - chr4_3:8717439-8717458 None:intergenic 20.0%
!! ATAATATCTTGACATAATGT+TGG + chr4_3:8718388-8718407 Msa0628130:intron 20.0%
!! TAATCTTCAAATACTAAGAT+AGG - chr4_3:8718445-8718464 None:intergenic 20.0%
!! CCTAAAATCATAATTGAATA+TGG - chr4_3:8718472-8718491 None:intergenic 20.0%
!!! CCATATTCAATTATGATTTT+AGG + chr4_3:8718469-8718488 Msa0628130:intron 20.0%
!! TCTTGTATCCTTATAAATAA+GGG + chr4_3:8718492-8718511 Msa0628130:intron 20.0%
!! GATTCAAATATATCAATACT+TGG - chr4_3:8718890-8718909 None:intergenic 20.0%
!!! TATATTTGAATCTTTTGATG+AGG + chr4_3:8718898-8718917 Msa0628130:CDS 20.0%
!! ATAAAAATTCTGAGCTATAT+AGG + chr4_3:8719315-8719334 Msa0628130:CDS 20.0%
!! TAAAAATGATTGTGAGTATT+GGG - chr4_3:8719521-8719540 None:intergenic 20.0%
!! GAAATGAAAAATCAACTAAA+CGG - chr4_3:8719762-8719781 None:intergenic 20.0%
!!! ATTGATGGACAATCTTATTT+TGG + chr4_3:8716138-8716157 Msa0628130:CDS 25.0%
!!! TTGATAATGCTCATGTTTAA+TGG + chr4_3:8716177-8716196 Msa0628130:CDS 25.0%
! TTGGATTTGATCCAAATATT+TGG + chr4_3:8716364-8716383 Msa0628130:CDS 25.0%
! CTTATTTACCTCCAAATATT+TGG - chr4_3:8716378-8716397 None:intergenic 25.0%
! ATGATTATTGCTTACATAAC+TGG + chr4_3:8716577-8716596 Msa0628130:CDS 25.0%
! TAGTGTATAAAAAGTTGTGA+AGG - chr4_3:8717038-8717057 None:intergenic 25.0%
! GAAATTGAATTAACAGAATC+AGG + chr4_3:8717233-8717252 Msa0628130:CDS 25.0%
!!! TAGGTTTTTTTTAACTGTGT+TGG + chr4_3:8717441-8717460 Msa0628130:intron 25.0%
! CGAAGTTATTAATTAGCATT+TGG + chr4_3:8717609-8717628 Msa0628130:intron 25.0%
! AAAACTAGTGGTTATATTGA+TGG + chr4_3:8718112-8718131 Msa0628130:CDS 25.0%
! AAACTAGTGGTTATATTGAT+GGG + chr4_3:8718113-8718132 Msa0628130:CDS 25.0%
!!! CAAATGTTTCTTGCTTTTTA+GGG - chr4_3:8718159-8718178 None:intergenic 25.0%
! ATGTAAAAGGGAAAATGATA+AGG - chr4_3:8718327-8718346 None:intergenic 25.0%
!! CCTTAAAAAGGTATGTAAAA+GGG - chr4_3:8718339-8718358 None:intergenic 25.0%
!! ACCTTAAAAAGGTATGTAAA+AGG - chr4_3:8718340-8718359 None:intergenic 25.0%
! CTAACACAAAAACCTTAAAA+AGG - chr4_3:8718351-8718370 None:intergenic 25.0%
!!! TTTTAAGGTTTTTGTGTTAG+AGG + chr4_3:8718351-8718370 Msa0628130:intron 25.0%
! GTCTTGTATCCTTATAAATA+AGG + chr4_3:8718491-8718510 Msa0628130:intron 25.0%
!! ACTACTAACCCTTATTTATA+AGG - chr4_3:8718503-8718522 None:intergenic 25.0%
! ATATATCAATACTTGGTTGA+TGG - chr4_3:8718883-8718902 None:intergenic 25.0%
! TGAAAATTTATTTGCTCATG+TGG + chr4_3:8718953-8718972 Msa0628130:intron 25.0%
! ACAATACTATTATATGGATC+AGG + chr4_3:8719351-8719370 Msa0628130:intron 25.0%
! CAATACTATTATATGGATCA+GGG + chr4_3:8719352-8719371 Msa0628130:intron 25.0%
! CTAAAAATGATTGTGAGTAT+TGG - chr4_3:8719522-8719541 None:intergenic 25.0%
!!! ATCATTTTTAGTTCAATGCT+TGG + chr4_3:8719531-8719550 Msa0628130:CDS 25.0%
! AATGTTTGTGCTAGAATATA+AGG - chr4_3:8720105-8720124 None:intergenic 25.0%
! TTAAGGTTGAAAATACTTAC+AGG - chr4_3:8720342-8720361 None:intergenic 25.0%
! TGGAAATATAACAGACATAT+TGG + chr4_3:8720506-8720525 Msa0628130:CDS 25.0%
! TATAACAGACATATTGGAAA+TGG + chr4_3:8720512-8720531 Msa0628130:CDS 25.0%
! CATCACTAATTTATCTATGT+TGG - chr4_3:8720677-8720696 None:intergenic 25.0%
! CATAGATAAATTAGTGATGT+AGG + chr4_3:8720678-8720697 Msa0628130:exon 25.0%
!! TGAAATATACCTTTTTGACA+AGG + chr4_3:8720795-8720814 Msa0628130:three_prime_UTR 25.0%
!! GAAATATACCTTTTTGACAA+GGG + chr4_3:8720796-8720815 Msa0628130:three_prime_UTR 25.0%
TCTCTTTGCTTAAAGAATGT+AGG - chr4_3:8716237-8716256 None:intergenic 30.0%
!!! ACCACTTATTTTATCCTTCA+TGG + chr4_3:8716256-8716275 Msa0628130:CDS 30.0%
!!! CCACTTATTTTATCCTTCAT+GGG + chr4_3:8716257-8716276 Msa0628130:CDS 30.0%
ACTTGTAGATGCTTCTATTT+GGG + chr4_3:8716320-8716339 Msa0628130:CDS 30.0%
TTCCTCACTTACTATGTAAT+TGG + chr4_3:8716345-8716364 Msa0628130:CDS 30.0%
ATCCAATTACATAGTAAGTG+AGG - chr4_3:8716350-8716369 None:intergenic 30.0%
GATTTGATCCAAATATTTGG+AGG + chr4_3:8716367-8716386 Msa0628130:CDS 30.0%
! CTTATAATTTTCACATTGGG+TGG + chr4_3:8716613-8716632 Msa0628130:CDS 30.0%
TGATGCATCTTTCATTTCAT+TGG + chr4_3:8716734-8716753 Msa0628130:intron 30.0%
AATCAGATGATATTAAGCAC+TGG + chr4_3:8716762-8716781 Msa0628130:intron 30.0%
! GCATTTTGTGCATACATTAA+AGG - chr4_3:8716812-8716831 None:intergenic 30.0%
GTATGCACAAAATGCTATAA+TGG + chr4_3:8716817-8716836 Msa0628130:CDS 30.0%
ATAATGGTGAATGAATTCCT+TGG + chr4_3:8716833-8716852 Msa0628130:intron 30.0%
TATAAAGATACTCACGATCA+AGG - chr4_3:8717074-8717093 None:intergenic 30.0%
GCAACAATAAAAGAAGAATC+AGG + chr4_3:8717179-8717198 Msa0628130:CDS 30.0%
ACAATAAAAGAAGAATCAGG+AGG + chr4_3:8717182-8717201 Msa0628130:CDS 30.0%
ATTGAAATATTTGTGTGAGG+AGG - chr4_3:8717277-8717296 None:intergenic 30.0%
TGCATTGAAATATTTGTGTG+AGG - chr4_3:8717280-8717299 None:intergenic 30.0%
TAGCGATAGAAATTTAGAGA+CGG + chr4_3:8717306-8717325 Msa0628130:intron 30.0%
AATATTAGAGACGCCAAATT+TGG + chr4_3:8717350-8717369 Msa0628130:intron 30.0%
GTGATAGAATATGGTTCAAA+AGG - chr4_3:8717540-8717559 None:intergenic 30.0%
TCGTCAAATGTGATAGAATA+TGG - chr4_3:8717549-8717568 None:intergenic 30.0%
! GCATTTGGTTTAGATAATCA+AGG + chr4_3:8717624-8717643 Msa0628130:intron 30.0%
TGACATTGTGGAAAATTTCA+TGG + chr4_3:8717692-8717711 Msa0628130:intron 30.0%
!!! TCTGTTTTTGGAATTTCAAC+TGG + chr4_3:8717942-8717961 Msa0628130:intron 30.0%
!! AACTACTTTGATGGATGTTT+TGG + chr4_3:8718081-8718100 Msa0628130:CDS 30.0%
!!! GCAAATGTTTCTTGCTTTTT+AGG - chr4_3:8718160-8718179 None:intergenic 30.0%
! AATACTAACCTTTCTGGTAT+TGG - chr4_3:8718290-8718309 None:intergenic 30.0%
! CCCTTTTACATACCTTTTTA+AGG + chr4_3:8718336-8718355 Msa0628130:intron 30.0%
GTTCGAAAGCTAAGTTATTT+AGG - chr4_3:8718565-8718584 None:intergenic 30.0%
CATGAAAATTATGGATGGAT+TGG - chr4_3:8718762-8718781 None:intergenic 30.0%
! CAATCCATCCATAATTTTCA+TGG + chr4_3:8718760-8718779 Msa0628130:CDS 30.0%
TAGTTATTCTTGTTGAAGAG+TGG + chr4_3:8719007-8719026 Msa0628130:intron 30.0%
TGATTAGAATAACGACCTAA+TGG - chr4_3:8719055-8719074 None:intergenic 30.0%
TCAATTGATCAAGTACTTTG+AGG + chr4_3:8719072-8719091 Msa0628130:CDS 30.0%
!! TCTATTGTCTAGAGTATTGA+AGG + chr4_3:8719191-8719210 Msa0628130:intron 30.0%
GGAGTAAGTAAAATAAACGA+TGG + chr4_3:8719212-8719231 Msa0628130:CDS 30.0%
TTTCTGAATATGATTACTGC+AGG - chr4_3:8719400-8719419 None:intergenic 30.0%
GCAGTAATCATATTCAGAAA+AGG + chr4_3:8719400-8719419 Msa0628130:intron 30.0%
ACTGTTATACACTATTGTTC+AGG + chr4_3:8719428-8719447 Msa0628130:intron 30.0%
TAAGCAACTTATAGCAGAAT+TGG + chr4_3:8719456-8719475 Msa0628130:CDS 30.0%
AAGCAACTTATAGCAGAATT+GGG + chr4_3:8719457-8719476 Msa0628130:CDS 30.0%
!! ACTTTCATAGCATTGATGTT+TGG + chr4_3:8719625-8719644 Msa0628130:CDS 30.0%
!! TGATGTTTGGAACAATGTTT+TGG + chr4_3:8719638-8719657 Msa0628130:CDS 30.0%
!! GATGTTTGGAACAATGTTTT+GGG + chr4_3:8719639-8719658 Msa0628130:CDS 30.0%
CTAGCACAAACATTATCATA+TGG + chr4_3:8720111-8720130 Msa0628130:intron 30.0%
GTAATAGTTTATGCCATGAT+TGG + chr4_3:8720135-8720154 Msa0628130:intron 30.0%
TTGAAAATACTTACAGGTCT+TGG - chr4_3:8720336-8720355 None:intergenic 30.0%
GGATTATTTGCATCACAATT+TGG + chr4_3:8720486-8720505 Msa0628130:CDS 30.0%
! GGTATCAAACATGATTTTGT+AGG + chr4_3:8720573-8720592 Msa0628130:CDS 30.0%
CAATGAAAATAGTGCAGATT+TGG + chr4_3:8720748-8720767 Msa0628130:three_prime_UTR 30.0%
! CACTGTTTCTTTGTGCATAT+GGG - chr4_3:8716118-8716137 None:intergenic 35.0%
! TCACTGTTTCTTTGTGCATA+TGG - chr4_3:8716119-8716138 None:intergenic 35.0%
CACAAAGAAACAGTGATTGA+TGG + chr4_3:8716123-8716142 Msa0628130:CDS 35.0%
CCCATGAAGGATAAAATAAG+TGG - chr4_3:8716260-8716279 None:intergenic 35.0%
CACTTGTAGATGCTTCTATT+TGG + chr4_3:8716319-8716338 Msa0628130:CDS 35.0%
TACAAAATGCTGCTATAGCT+CGG - chr4_3:8716552-8716571 None:intergenic 35.0%
! AGCTATAGCAGCATTTTGTA+GGG + chr4_3:8716552-8716571 Msa0628130:CDS 35.0%
!! ATATTAAGCACTGGTGGATT+TGG + chr4_3:8716771-8716790 Msa0628130:CDS 35.0%
!! TATTAAGCACTGGTGGATTT+GGG + chr4_3:8716772-8716791 Msa0628130:CDS 35.0%
ATGAATTCCTTGGAAACAGT+TGG + chr4_3:8716843-8716862 Msa0628130:intron 35.0%
! GTTCAATGTTTGAAATCACG+TGG + chr4_3:8716952-8716971 Msa0628130:CDS 35.0%
GATTCTTCACACATGCATAT+TGG + chr4_3:8716974-8716993 Msa0628130:CDS 35.0%
TCACACATGCATATTGGTAT+TGG + chr4_3:8716980-8716999 Msa0628130:CDS 35.0%
! CATGCATATTGGTATTGGAT+AGG + chr4_3:8716985-8717004 Msa0628130:CDS 35.0%
! TATTGGTATTGGATAGGAGT+TGG + chr4_3:8716991-8717010 Msa0628130:CDS 35.0%
!! ATAGGAGTTGGTGCATTAAT+AGG + chr4_3:8717003-8717022 Msa0628130:CDS 35.0%
TATGGGCTTACTAACCTAAT+AGG + chr4_3:8717422-8717441 Msa0628130:intron 35.0%
CTTCGAAAATGACTTACTTG+TGG - chr4_3:8717594-8717613 None:intergenic 35.0%
ATGCGACCAAAATCATAGTT+AGG + chr4_3:8717728-8717747 Msa0628130:intron 35.0%
! CTGCATCCTAACTATGATTT+TGG - chr4_3:8717737-8717756 None:intergenic 35.0%
CTGTGATCATACTAATGCAA+GGG - chr4_3:8717841-8717860 None:intergenic 35.0%
TCTGTGATCATACTAATGCA+AGG - chr4_3:8717842-8717861 None:intergenic 35.0%
!!! TTTTTGGAATTTCAACTGGC+AGG + chr4_3:8717946-8717965 Msa0628130:intron 35.0%
! GATGGGAGCATAAAAATTTC+TGG + chr4_3:8718130-8718149 Msa0628130:CDS 35.0%
! AGTTGATTCCAATACCAGAA+AGG + chr4_3:8718279-8718298 Msa0628130:CDS 35.0%
GCAGTAAATACTAACCTTTC+TGG - chr4_3:8718296-8718315 None:intergenic 35.0%
ATGCTTGTAGATGTTCATTG+AGG + chr4_3:8718619-8718638 Msa0628130:intron 35.0%
GATGTTCATTGAGGAAGTTA+TGG + chr4_3:8718628-8718647 Msa0628130:intron 35.0%
AACTATTGCAGTCGAATTAG+TGG + chr4_3:8718736-8718755 Msa0628130:CDS 35.0%
TCGTCCATGAAAATTATGGA+TGG - chr4_3:8718767-8718786 None:intergenic 35.0%
!! ATCAATACTTGGTTGATGGA+TGG - chr4_3:8718879-8718898 None:intergenic 35.0%
TTATTCTTGTTGAAGAGTGG+AGG + chr4_3:8719010-8719029 Msa0628130:CDS 35.0%
GAGGACGAGAAATATATGTT+GGG + chr4_3:8719029-8719048 Msa0628130:CDS 35.0%
GAAATATATGTTGGGCCATT+AGG + chr4_3:8719037-8719056 Msa0628130:CDS 35.0%
!! TTGATCAAGTACTTTGAGGT+TGG + chr4_3:8719076-8719095 Msa0628130:intron 35.0%
!! AAGTACTTTGAGGTTGGATT+TGG + chr4_3:8719082-8719101 Msa0628130:intron 35.0%
GGTGATTCAAGAATTATGCA+TGG - chr4_3:8719149-8719168 None:intergenic 35.0%
GGTAGGGAAATAAATATCCT+TGG - chr4_3:8719500-8719519 None:intergenic 35.0%
!! ATGATTGTGAGTATTGGGTA+GGG - chr4_3:8719516-8719535 None:intergenic 35.0%
!! AATGATTGTGAGTATTGGGT+AGG - chr4_3:8719517-8719536 None:intergenic 35.0%
AACCTAACAGCAGTGTATAA+CGG - chr4_3:8719595-8719614 None:intergenic 35.0%
!! AAAAGGCATCACAATTCAAG+TGG - chr4_3:8719784-8719803 None:intergenic 35.0%
! TTGAATTGTGATGCCTTTTG+TGG + chr4_3:8719785-8719804 Msa0628130:intron 35.0%
!!! TACACTGCTGTTTTCTTCAT+TGG + chr4_3:8719855-8719874 Msa0628130:CDS 35.0%
!!! ACACTGCTGTTTTCTTCATT+GGG + chr4_3:8719856-8719875 Msa0628130:CDS 35.0%
! TTTTATAGAGAAAGAGCTGC+TGG + chr4_3:8719930-8719949 Msa0628130:CDS 35.0%
TTTATAGAGAAAGAGCTGCT+GGG + chr4_3:8719931-8719950 Msa0628130:CDS 35.0%
! GGACTGTAGCAAAATTCTTT+TGG + chr4_3:8720166-8720185 Msa0628130:CDS 35.0%
!! TTTTGCTACTTCACCTTCTA+TGG + chr4_3:8720213-8720232 Msa0628130:CDS 35.0%
ACTGCAGCAATATGGTAATT+TGG - chr4_3:8720261-8720280 None:intergenic 35.0%
! TTACCATATTGCTGCAGTTT+TGG + chr4_3:8720263-8720282 Msa0628130:CDS 35.0%
!! GTTTTGGCATCTGCATTTTA+TGG + chr4_3:8720279-8720298 Msa0628130:CDS 35.0%
! CATCTGCATTTTATGGAAGT+TGG + chr4_3:8720286-8720305 Msa0628130:CDS 35.0%
AATTAGTGATGTAGGAAGAC+TGG + chr4_3:8720686-8720705 Msa0628130:exon 35.0%
! GGAGCTTTTACAATCCATGA+GGG - chr4_3:8716294-8716313 None:intergenic 40.0%
! AGGAGCTTTTACAATCCATG+AGG - chr4_3:8716295-8716314 None:intergenic 40.0%
! GAAGCATCTACAAGTGTAAC+AGG - chr4_3:8716315-8716334 None:intergenic 40.0%
! GAGCTATAGCAGCATTTTGT+AGG + chr4_3:8716551-8716570 Msa0628130:CDS 40.0%
! GGTGGATTCATTCTTGCAAA+AGG + chr4_3:8716631-8716650 Msa0628130:CDS 40.0%
!! CAGATGATATTAAGCACTGG+TGG + chr4_3:8716765-8716784 Msa0628130:intron 40.0%
!! ATTAAGCACTGGTGGATTTG+GGG + chr4_3:8716773-8716792 Msa0628130:CDS 40.0%
CTTTGTTCCAACTGTTTCCA+AGG - chr4_3:8716853-8716872 None:intergenic 40.0%
CCATATTCAAACGTGACACT+GGG + chr4_3:8716928-8716947 Msa0628130:CDS 40.0%
CAATGTCAACAATTGAGACG+TGG - chr4_3:8717680-8717699 None:intergenic 40.0%
CGTCTCAATTGTTGACATTG+TGG + chr4_3:8717680-8717699 Msa0628130:intron 40.0%
CAACTATAGTCTCGATGTCA+AGG - chr4_3:8717770-8717789 None:intergenic 40.0%
TGACATCGAGACTATAGTTG+CGG + chr4_3:8717770-8717789 Msa0628130:intron 40.0%
TGGCAGGAAATGAAAGATCA+AGG + chr4_3:8717962-8717981 Msa0628130:intron 40.0%
GAAAGATCAAGGTGTGATAG+AGG + chr4_3:8717973-8717992 Msa0628130:CDS 40.0%
ATCAAGGTGTGATAGAGGAT+AGG + chr4_3:8717978-8717997 Msa0628130:CDS 40.0%
! GATAGGCTAGTGCTTTTGAA+GGG + chr4_3:8717995-8718014 Msa0628130:CDS 40.0%
! ACAGCTTTGATAGGTGTTAG+TGG + chr4_3:8718049-8718068 Msa0628130:CDS 40.0%
! CAGCTTTGATAGGTGTTAGT+GGG + chr4_3:8718050-8718069 Msa0628130:CDS 40.0%
! AGCTTTGATAGGTGTTAGTG+GGG + chr4_3:8718051-8718070 Msa0628130:CDS 40.0%
GGCTGGTAAAACTACTTTGA+TGG + chr4_3:8718072-8718091 Msa0628130:CDS 40.0%
!!! ACTTTGATGGATGTTTTGGC+TGG + chr4_3:8718085-8718104 Msa0628130:CDS 40.0%
GAAACATTTGCCAGAATCTC+TGG + chr4_3:8718169-8718188 Msa0628130:CDS 40.0%
ACTCAGAGACAGTAACTTGA+GGG - chr4_3:8718222-8718241 None:intergenic 40.0%
AGTCCTTACTGTATTCAGCT+TGG + chr4_3:8718239-8718258 Msa0628130:CDS 40.0%
AAGCCAAGCTGAATACAGTA+AGG - chr4_3:8718245-8718264 None:intergenic 40.0%
GTATTGGAATCAACTTCTGC+CGG - chr4_3:8718274-8718293 None:intergenic 40.0%
AGTTAACCTCTTGCGTTGTT+CGG - chr4_3:8718720-8718739 None:intergenic 40.0%
AGGCTCGTCCATGAAAATTA+TGG - chr4_3:8718771-8718790 None:intergenic 40.0%
CTAGCATCTAATCCAGATGT+AGG - chr4_3:8718791-8718810 None:intergenic 40.0%
CAATTGTTATGCGAACCGTT+AGG + chr4_3:8718819-8718838 Msa0628130:CDS 40.0%
GGAGGACGAGAAATATATGT+TGG + chr4_3:8719028-8719047 Msa0628130:CDS 40.0%
ATGGATATAACCCAGCAACA+TGG + chr4_3:8719231-8719250 Msa0628130:CDS 40.0%
CTTCTAACATCCATGTTGCT+GGG - chr4_3:8719244-8719263 None:intergenic 40.0%
ACTTCTAACATCCATGTTGC+TGG - chr4_3:8719245-8719264 None:intergenic 40.0%
GAATTGGGTAAACCTGCTAT+TGG + chr4_3:8719472-8719491 Msa0628130:CDS 40.0%
!! TAAACCTGCTATTGGTTCCA+AGG + chr4_3:8719480-8719499 Msa0628130:CDS 40.0%
ATATCCTTGGAACCAATAGC+AGG - chr4_3:8719487-8719506 None:intergenic 40.0%
GGAAACAACGTTGGTCATAT+TGG + chr4_3:8719563-8719582 Msa0628130:CDS 40.0%
ACCTAACAGCAGTGTATAAC+GGG - chr4_3:8719594-8719613 None:intergenic 40.0%
!!! CACTGCTGTTTTCTTCATTG+GGG + chr4_3:8719857-8719876 Msa0628130:CDS 40.0%
GTTCTTTCAACAGCTACTAC+TGG - chr4_3:8719906-8719925 None:intergenic 40.0%
ATTACCTGTGCAAGTGCATA+GGG - chr4_3:8719972-8719991 None:intergenic 40.0%
TATTACCTGTGCAAGTGCAT+AGG - chr4_3:8719973-8719992 None:intergenic 40.0%
TAACTCACTCTCTTCTGTCA+CGG + chr4_3:8720064-8720083 Msa0628130:intron 40.0%
ATGCCATGATTGGATTTGAG+TGG + chr4_3:8720145-8720164 Msa0628130:intron 40.0%
AGTCCACTCAAATCCAATCA+TGG - chr4_3:8720151-8720170 None:intergenic 40.0%
CTTCACCTTCTATGGTATGA+TGG + chr4_3:8720221-8720240 Msa0628130:CDS 40.0%
ATGCCAAAACTGCAGCAATA+TGG - chr4_3:8720269-8720288 None:intergenic 40.0%
! GGAAGTTGGAATCTCTTTTC+TGG + chr4_3:8720300-8720319 Msa0628130:CDS 40.0%
AATGGAAGATGTTACAGTGC+AGG + chr4_3:8720530-8720549 Msa0628130:CDS 40.0%
AATAGTGCAGATTTGGCATC+TGG + chr4_3:8720755-8720774 Msa0628130:three_prime_UTR 40.0%
GGAATAGCATAAGCCCATGA+AGG - chr4_3:8716273-8716292 None:intergenic 45.0%
CTGATAAACCAGACAGCTAC+TGG + chr4_3:8716520-8716539 Msa0628130:CDS 45.0%
GCCATATTCAAACGTGACAC+TGG + chr4_3:8716927-8716946 Msa0628130:CDS 45.0%
CCCAGTGTCACGTTTGAATA+TGG - chr4_3:8716931-8716950 None:intergenic 45.0%
ATTCTAGCCGTGGGATGAAA+AGG + chr4_3:8717502-8717521 Msa0628130:CDS 45.0%
TTCTAGCCGTGGGATGAAAA+GGG + chr4_3:8717503-8717522 Msa0628130:CDS 45.0%
! GGATAGGCTAGTGCTTTTGA+AGG + chr4_3:8717994-8718013 Msa0628130:CDS 45.0%
!! GTGCTTTTGAAGGGAGTTAG+TGG + chr4_3:8718004-8718023 Msa0628130:CDS 45.0%
GTTAGTGGTGCATTTAGACC+TGG + chr4_3:8718019-8718038 Msa0628130:CDS 45.0%
ATCAAAGCTGTCAGAACACC+AGG - chr4_3:8718040-8718059 None:intergenic 45.0%
! GGTGTTCTGACAGCTTTGAT+AGG + chr4_3:8718040-8718059 Msa0628130:CDS 45.0%
!!! TGATGGATGTTTTGGCTGGT+AGG + chr4_3:8718089-8718108 Msa0628130:CDS 45.0%
TTGGCTGGTAGGAAAACTAG+TGG + chr4_3:8718100-8718119 Msa0628130:CDS 45.0%
CTCACAATAGCCAGAGATTC+TGG - chr4_3:8718182-8718201 None:intergenic 45.0%
CTCAGAGACAGTAACTTGAG+GGG - chr4_3:8718221-8718240 None:intergenic 45.0%
GACTCAGAGACAGTAACTTG+AGG - chr4_3:8718223-8718242 None:intergenic 45.0%
TTCAGCTTGGCTTCGTTTAC+CGG + chr4_3:8718252-8718271 Msa0628130:CDS 45.0%
!! AACTCACTAGTTGGTTTGCC+TGG + chr4_3:8718677-8718696 Msa0628130:CDS 45.0%
TTTCAACCGAACAACGCAAG+AGG + chr4_3:8718711-8718730 Msa0628130:CDS 45.0%
TATGCGAACCGTTAGGAACA+CGG + chr4_3:8718826-8718845 Msa0628130:CDS 45.0%
TGTGTCAACCGTGTTCCTAA+CGG - chr4_3:8718837-8718856 None:intergenic 45.0%
CCTAATGCAACTTCTTGTGC+TGG - chr4_3:8719275-8719294 None:intergenic 45.0%
CCAGCACAAGAAGTTGCATT+AGG + chr4_3:8719272-8719291 Msa0628130:CDS 45.0%
!! TTCAATGCTTGGCTTGCTTG+TGG + chr4_3:8719542-8719561 Msa0628130:CDS 45.0%
CTTGCTTGTGGAAACAACGT+TGG + chr4_3:8719554-8719573 Msa0628130:CDS 45.0%
ACCCGTTATACACTGCTGTT+AGG + chr4_3:8719590-8719609 Msa0628130:CDS 45.0%
!!! GGAACAATGTTTTGGGACCT+CGG + chr4_3:8719646-8719665 Msa0628130:CDS 45.0%
TCACTTACTATTTGCGTCCG+AGG - chr4_3:8719666-8719685 None:intergenic 45.0%
AATCAACTAAACGGCGCGTT+TGG - chr4_3:8719753-8719772 None:intergenic 45.0%
CTTGTGCTGGAATCCACAAA+AGG - chr4_3:8719801-8719820 None:intergenic 45.0%
TTTGTGGATTCCAGCACAAG+CGG + chr4_3:8719801-8719820 Msa0628130:intron 45.0%
ACTAGACCTGTCTAATGCGA+TGG + chr4_3:8719824-8719843 Msa0628130:CDS 45.0%
CTAGACCTGTCTAATGCGAT+GGG + chr4_3:8719825-8719844 Msa0628130:CDS 45.0%
AACTCACTCTCTTCTGTCAC+GGG + chr4_3:8720065-8720084 Msa0628130:intron 45.0%
CACTGCCATCATACCATAGA+AGG - chr4_3:8720229-8720248 None:intergenic 45.0%
CTTCTATGGTATGATGGCAG+TGG + chr4_3:8720227-8720246 Msa0628130:CDS 45.0%
GATAACAGAGAATGCCAGTG+TGG + chr4_3:8720418-8720437 Msa0628130:intron 45.0%
!! TGTGGTGGAGTTGGTACTAT+TGG + chr4_3:8720436-8720455 Msa0628130:CDS 45.0%
!! GTGGTGGAGTTGGTACTATT+GGG + chr4_3:8720437-8720456 Msa0628130:CDS 45.0%
ATTGGGCAAATCCTGTAGCT+TGG + chr4_3:8720454-8720473 Msa0628130:CDS 45.0%
CCATATAAGCTCCAAGCTAC+AGG - chr4_3:8720468-8720487 None:intergenic 45.0%
CCTGTAGCTTGGAGCTTATA+TGG + chr4_3:8720465-8720484 Msa0628130:CDS 45.0%
! GTTTCTGCAGCTGTGGTTTT+TGG + chr4_3:8720597-8720616 Msa0628130:CDS 45.0%
GGCAGATTCCCTTGTCAAAA+AGG - chr4_3:8720807-8720826 None:intergenic 45.0%
GGGCTTATGCTATTCCCTCA+TGG + chr4_3:8716277-8716296 Msa0628130:CDS 50.0%
GGAACAATCCAGTAGCTGTC+TGG - chr4_3:8716531-8716550 None:intergenic 50.0%
!! ACTGGTGGATTTGGGGTTAC+TGG + chr4_3:8716780-8716799 Msa0628130:CDS 50.0%
!! CTGTTGCTGATTCTAGCCGT+GGG + chr4_3:8717493-8717512 Msa0628130:CDS 50.0%
TCTAGCCGTGGGATGAAAAG+GGG + chr4_3:8717504-8717523 Msa0628130:CDS 50.0%
! CCATTCCCCTTTTCATCCCA+CGG - chr4_3:8717512-8717531 None:intergenic 50.0%
TTGATAGGTGTTAGTGGGGC+TGG + chr4_3:8718055-8718074 Msa0628130:CDS 50.0%
AGACAGTAACTTGAGGGGAG+TGG - chr4_3:8718216-8718235 None:intergenic 50.0%
CCAACTAGTGAGTTCCTCAG+CGG - chr4_3:8718671-8718690 None:intergenic 50.0%
TTCATGGACGAGCCTACATC+TGG + chr4_3:8718776-8718795 Msa0628130:CDS 50.0%
GTTAGGAACACGGTTGACAC+AGG + chr4_3:8718836-8718855 Msa0628130:CDS 50.0%
TTGAGCCCATCGCATTAGAC+AGG - chr4_3:8719833-8719852 None:intergenic 50.0%
! GTTGTACCGCGGCTGAATTT+TGG - chr4_3:8719884-8719903 None:intergenic 50.0%
! AGCTACTACTGGTTGTACCG+CGG - chr4_3:8719895-8719914 None:intergenic 50.0%
CTGTGCAAGTGCATAGGGTA+GGG - chr4_3:8719967-8719986 None:intergenic 50.0%
AACAGAGAATGCCAGTGTGG+TGG + chr4_3:8720421-8720440 Msa0628130:intron 50.0%
TAGTACCAACTCCACCACAC+TGG - chr4_3:8720435-8720454 None:intergenic 50.0%
! TGTAGGTGTTTCTGCAGCTG+TGG + chr4_3:8720590-8720609 Msa0628130:CDS 50.0%
TGCGCGTATTGAAGACGAAG+TGG + chr4_3:8720710-8720729 Msa0628130:three_prime_UTR 50.0%
!! GCTGTTGCTGATTCTAGCCG+TGG + chr4_3:8717492-8717511 Msa0628130:CDS 55.0%
CCGTGGGATGAAAAGGGGAA+TGG + chr4_3:8717509-8717528 Msa0628130:CDS 55.0%
CGAGACTATAGTTGCGGCTG+CGG + chr4_3:8717776-8717795 Msa0628130:intron 55.0%
TAGTCGAGCTGAATCCGCTG+AGG + chr4_3:8718654-8718673 Msa0628130:CDS 55.0%
CCGCTGAGGAACTCACTAGT+TGG + chr4_3:8718668-8718687 Msa0628130:CDS 55.0%
!! GTTGGTTTGCCTGGTGTGAG+CGG + chr4_3:8718686-8718705 Msa0628130:CDS 55.0%
GTTGAAAGACCGCTCACACC+AGG - chr4_3:8718698-8718717 None:intergenic 55.0%
TGGGGTCCAAAATTCAGCCG+CGG + chr4_3:8719875-8719894 Msa0628130:CDS 55.0%
CCTGTGCAAGTGCATAGGGT+AGG - chr4_3:8719968-8719987 None:intergenic 55.0%
CCTACCCTATGCACTTGCAC+AGG + chr4_3:8719965-8719984 Msa0628130:CDS 55.0%
! GAATGCCAGTGTGGTGGAGT+TGG + chr4_3:8720427-8720446 Msa0628130:CDS 55.0%
GACGAAGTGGCGCACAAGAA+AGG + chr4_3:8720723-8720742 Msa0628130:three_prime_UTR 55.0%
CAGGTCTAGTCCGCTTGTGC+TGG - chr4_3:8719814-8719833 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 8716081 8720843 8716081 ID=Msa0628130;Name=Msa0628130
chr4_3 mRNA 8716081 8720843 8716081 ID=Msa0628130-mRNA-1;Parent=Msa0628130;Name=Msa0628130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.23|0.14|1|1|1|14|157|864
chr4_3 exon 8716081 8716388 8716081 ID=Msa0628130-mRNA-1:exon:2498;Parent=Msa0628130-mRNA-1
chr4_3 exon 8716492 8716652 8716492 ID=Msa0628130-mRNA-1:exon:2499;Parent=Msa0628130-mRNA-1
chr4_3 exon 8716768 8716838 8716768 ID=Msa0628130-mRNA-1:exon:2500;Parent=Msa0628130-mRNA-1
chr4_3 exon 8716922 8717078 8716922 ID=Msa0628130-mRNA-1:exon:2501;Parent=Msa0628130-mRNA-1
chr4_3 exon 8717162 8717254 8717162 ID=Msa0628130-mRNA-1:exon:2502;Parent=Msa0628130-mRNA-1
chr4_3 exon 8717472 8717596 8717472 ID=Msa0628130-mRNA-1:exon:2503;Parent=Msa0628130-mRNA-1
chr4_3 exon 8717968 8718300 8717968 ID=Msa0628130-mRNA-1:exon:2504;Parent=Msa0628130-mRNA-1
chr4_3 exon 8718629 8718919 8718629 ID=Msa0628130-mRNA-1:exon:2505;Parent=Msa0628130-mRNA-1
chr4_3 exon 8719010 8719093 8719010 ID=Msa0628130-mRNA-1:exon:2506;Parent=Msa0628130-mRNA-1
chr4_3 exon 8719203 8719336 8719203 ID=Msa0628130-mRNA-1:exon:2507;Parent=Msa0628130-mRNA-1
chr4_3 exon 8719450 8719677 8719450 ID=Msa0628130-mRNA-1:exon:2508;Parent=Msa0628130-mRNA-1
chr4_3 exon 8719815 8719986 8719815 ID=Msa0628130-mRNA-1:exon:2509;Parent=Msa0628130-mRNA-1
chr4_3 exon 8720165 8720341 8720165 ID=Msa0628130-mRNA-1:exon:2510;Parent=Msa0628130-mRNA-1
chr4_3 exon 8720426 8720843 8720426 ID=Msa0628130-mRNA-1:exon:2511;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8716081 8716388 8716081 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8716492 8716652 8716492 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8716768 8716838 8716768 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8716922 8717078 8716922 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8717162 8717254 8717162 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8717472 8717596 8717472 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8717968 8718300 8717968 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8718629 8718919 8718629 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8719010 8719093 8719010 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8719203 8719336 8719203 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8719450 8719677 8719450 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8719815 8719986 8719815 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8720165 8720341 8720165 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 CDS 8720426 8720686 8720426 ID=Msa0628130-mRNA-1:cds;Parent=Msa0628130-mRNA-1
chr4_3 three_prime_UTR 8720687 8720843 8720687 ID=Msa0628130-mRNA-1:three_prime_utr;Parent=Msa0628130-mRNA-1
Gene Sequence

>Msa0628130

ATGGCAACAATTACTATGACACTTTTTCTGCGAACCCATATGCACAAAGAAACAGTGATTGATGGACAATCTTATTTTGGTGCTTTATTTTTCTCATTGATAATGCTCATGTTTAATGGAACTATTGAGCTTACATTGACAATTGTGAAACTTCCTACATTCTTTAAGCAAAGAGACCACTTATTTTATCCTTCATGGGCTTATGCTATTCCCTCATGGATTGTAAAAGCTCCTGTTACACTTGTAGATGCTTCTATTTGGGTATTCCTCACTTACTATGTAATTGGATTTGATCCAAATATTTGGAGATTTCTTAAGATGTATCTTCTACTAATACTGATAAACCAGACAGCTACTGGATTGTTCCGAGCTATAGCAGCATTTTGTAGGGATATGATTATTGCTTACATAACTGGCTTCTATACACTTCTTATAATTTTCACATTGGGTGGATTCATTCTTGCAAAAGATGATATTAAGCACTGGTGGATTTGGGGTTACTGGATTTCACCTTTAATGTATGCACAAAATGCTATAATGATAACGCCATATTCAAACGTGACACTGGGAGTTCAATGTTTGAAATCACGTGGATTCTTCACACATGCATATTGGTATTGGATAGGAGTTGGTGCATTAATAGGATATATTTTCCTTCACAACTTTTTATACACTATCGCTCTCACTTACCTTGATCCACTTGACAAGCAACAAGCAACAATAAAAGAAGAATCAGGAGGCAATAATGCACCAAATGATAGAAATCAAGAAATTGAATTAACAGAATCAGAAAATTCTAGAAGATCTACTGCTGTTGCTGATTCTAGCCGTGGGATGAAAAGGGGAATGGTTCTACCTTTTGAACCATATTCTATCACATTTGACGAAATTGTATACTCTGTTGACATGCCACAAGAAATGAAAGATCAAGGTGTGATAGAGGATAGGCTAGTGCTTTTGAAGGGAGTTAGTGGTGCATTTAGACCTGGTGTTCTGACAGCTTTGATAGGTGTTAGTGGGGCTGGTAAAACTACTTTGATGGATGTTTTGGCTGGTAGGAAAACTAGTGGTTATATTGATGGGAGCATAAAAATTTCTGGCTACCCTAAAAAGCAAGAAACATTTGCCAGAATCTCTGGCTATTGTGAGCAGAATGATATCCACTCCCCTCAAGTTACTGTCTCTGAGTCCTTACTGTATTCAGCTTGGCTTCGTTTACCGGCAGAAGTTGATTCCAATACCAGAAAGATGTTCATTGAGGAAGTTATGGAACTAGTCGAGCTGAATCCGCTGAGGAACTCACTAGTTGGTTTGCCTGGTGTGAGCGGTCTTTCAACCGAACAACGCAAGAGGTTAACTATTGCAGTCGAATTAGTGGCCAATCCATCCATAATTTTCATGGACGAGCCTACATCTGGATTAGATGCTAGAGCTGCTGCAATTGTTATGCGAACCGTTAGGAACACGGTTGACACAGGAAGAACAGTTGTTTGTACCATCCATCAACCAAGTATTGATATATTTGAATCTTTTGATGAGTTATTCTTGTTGAAGAGTGGAGGACGAGAAATATATGTTGGGCCATTAGGTCGTTATTCTAATCAATTGATCAAGTACTTTGAGAGTATTGAAGGAGTAAGTAAAATAAACGATGGATATAACCCAGCAACATGGATGTTAGAAGTGACAAGTCCAGCACAAGAAGTTGCATTAGGTGTTGATTTTCATGAGATATATAAAAATTCTGAGCTATATAGGAGAAATAAGCAACTTATAGCAGAATTGGGTAAACCTGCTATTGGTTCCAAGGATATTTATTTCCCTACCCAATACTCACAATCATTTTTAGTTCAATGCTTGGCTTGCTTGTGGAAACAACGTTGGTCATATTGGCGCAACCCGTTATACACTGCTGTTAGGTTTTACTTTGTTACTTTCATAGCATTGATGTTTGGAACAATGTTTTGGGACCTCGGACGCAAATACACAAGCGGACTAGACCTGTCTAATGCGATGGGCTCAATGTACACTGCTGTTTTCTTCATTGGGGTCCAAAATTCAGCCGCGGTACAACCAGTAGTAGCTGTTGAAAGAACTGTTTTTTATAGAGAAAGAGCTGCTGGGATGTATTCTGCCCTACCCTATGCACTTGCACAGTGGACTGTAGCAAAATTCTTTTGGTACATGTTTTTCATGTACTTCACATTTTGCTACTTCACCTTCTATGGTATGATGGCAGTGGCAGTTACTCCAAATTACCATATTGCTGCAGTTTTGGCATCTGCATTTTATGGAAGTTGGAATCTCTTTTCTGGATTTGTTGTTCCAAGACCTAGAATGCCAGTGTGGTGGAGTTGGTACTATTGGGCAAATCCTGTAGCTTGGAGCTTATATGGATTATTTGCATCACAATTTGGAAATATAACAGACATATTGGAAATGGAAGATGTTACAGTGCAGGAATATATAAGAAGTTATTATGGTATCAAACATGATTTTGTAGGTGTTTCTGCAGCTGTGGTTTTTGGAATTGCAATAATCTTTGCTTTTACTTTTGCTGTATCAATTAAAGTCTTTAACTTCCAACATAGATAA
Protein sequence

>Msa0628130

MATITMTLFLRTHMHKETVIDGQSYFGALFFSLIMLMFNGTIELTLTIVKLPTFFKQRDHLFYPSWAYAIPSWIVKAPVTLVDASIWVFLTYYVIGFDPNIWRFLKMYLLLILINQTATGLFRAIAAFCRDMIIAYITGFYTLLIIFTLGGFILAKDDIKHWWIWGYWISPLMYAQNAIMITPYSNVTLGVQCLKSRGFFTHAYWYWIGVGALIGYIFLHNFLYTIALTYLDPLDKQQATIKEESGGNNAPNDRNQEIELTESENSRRSTAVADSSRGMKRGMVLPFEPYSITFDEIVYSVDMPQEMKDQGVIEDRLVLLKGVSGAFRPGVLTALIGVSGAGKTTLMDVLAGRKTSGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPQVTVSESLLYSAWLRLPAEVDSNTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLLKSGGREIYVGPLGRYSNQLIKYFESIEGVSKINDGYNPATWMLEVTSPAQEVALGVDFHEIYKNSELYRRNKQLIAELGKPAIGSKDIYFPTQYSQSFLVQCLACLWKQRWSYWRNPLYTAVRFYFVTFIALMFGTMFWDLGRKYTSGLDLSNAMGSMYTAVFFIGVQNSAAVQPVVAVERTVFYRERAAGMYSALPYALAQWTVAKFFWYMFFMYFTFCYFTFYGMMAVAVTPNYHIAAVLASAFYGSWNLFSGFVVPRPRMPVWWSWYYWANPVAWSLYGLFASQFGNITDILEMEDVTVQEYIRSYYGIKHDFVGVSAAVVFGIAIIFAFTFAVSIKVFNFQHR*