Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128490 | XP_003626209.1 | 89.508 | 305 | 2 | 1 | 1 | 275 | 1 | 305 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128490 | sp|O82631|CAPZA_ARATH | 64.068 | 295 | 76 | 1 | 11 | 275 | 14 | 308 | 1.18e-141 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128490 | H2D5S1 | 89.508 | 305 | 2 | 1 | 1 | 275 | 1 | 305 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628130 | Msa1128490 | -0.802212 | 6.244543e-49 | -8.615850e-47 |
| Msa0640510 | Msa1128490 | 0.808575 | 2.895738e-50 | -8.615850e-47 |
| Msa0820850 | Msa1128490 | -0.800953 | 1.131628e-48 | -8.615850e-47 |
| Msa1004390 | Msa1128490 | -0.800332 | 1.514364e-48 | -8.615850e-47 |
| Msa1076700 | Msa1128490 | -0.800506 | 1.396086e-48 | -8.615850e-47 |
| Msa1077130 | Msa1128490 | -0.815469 | 9.096990e-52 | -8.615850e-47 |
| Msa1077200 | Msa1128490 | -0.812021 | 5.227696e-51 | -8.615850e-47 |
| Msa1077460 | Msa1128490 | -0.803625 | 3.187548e-49 | -8.615850e-47 |
| Msa0319170 | Msa1128490 | -0.805334 | 1.403339e-49 | -8.615850e-47 |
| Msa0354800 | Msa1128490 | 0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa1128440 | Msa1128490 | 0.834706 | 2.566133e-56 | -8.615850e-47 |
| Msa1128490 | Msa1128500 | 0.826461 | 2.679212e-54 | -8.615850e-47 |
| Msa1128490 | Msa1148000 | -0.808384 | 3.180109e-50 | -8.615850e-47 |
| Msa1128490 | Msa1388510 | -0.812159 | 4.877254e-51 | -8.615850e-47 |
| Msa0600710 | Msa1128490 | -0.800151 | 1.648987e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128490 | MtrunA17_Chr7g0272241 | 89.508 | 305 | 2 | 1 | 1 | 275 | 1 | 305 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128490 | AT3G05520.1 | 64.068 | 295 | 76 | 1 | 11 | 275 | 14 | 308 | 1.20e-142 | 403 |
| Msa1128490 | AT3G05520.3 | 64.068 | 295 | 76 | 1 | 11 | 275 | 41 | 335 | 1.46e-142 | 404 |
| Msa1128490 | AT3G05520.2 | 64.068 | 295 | 76 | 1 | 11 | 275 | 14 | 308 | 9.45e-142 | 404 |
Find 84 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGTCTACTGTGTAAA+TGG | 0.194304 | 7_3:-80320003 | Msa1128490:CDS |
| GTCAATGATCAATCATTCTT+AGG | 0.219011 | 7_3:-80318822 | Msa1128490:three_prime_UTR |
| ATGGGAGTTGGTGCTCAATT+TGG | 0.234047 | 7_3:-80319775 | Msa1128490:CDS |
| AAGTGTGATTTGTTGTAAAT+TGG | 0.238558 | 7_3:+80321594 | None:intergenic |
| GGCATAGCCCACAAAATTTC+TGG | 0.238634 | 7_3:-80319921 | Msa1128490:intron |
| CAACAAACAGTGGACGTAAA+AGG | 0.272987 | 7_3:-80319731 | Msa1128490:CDS |
| CCTTCCTGATTCTACTTTCA+AGG | 0.294319 | 7_3:-80319134 | Msa1128490:intron |
| CTGCATACATTGAAGAATTT+CGG | 0.307423 | 7_3:-80320915 | Msa1128490:intron |
| TAGACAGAACAGACACCTTT+TGG | 0.313335 | 7_3:+80320015 | None:intergenic |
| GGAAATAAGGTGCGGGTGAC+TGG | 0.335841 | 7_3:+80319008 | None:intergenic |
| TGGTGAATAGCTGAATATAT+AGG | 0.381480 | 7_3:+80318860 | None:intergenic |
| CCTTTGTCTTTCCCTTCTGC+CGG | 0.392253 | 7_3:-80318760 | Msa1128490:three_prime_UTR |
| GGTGAATAGCTGAATATATA+GGG | 0.403943 | 7_3:+80318861 | None:intergenic |
| TTTCTTCTCAATTCTCCTCC+TGG | 0.404211 | 7_3:-80321783 | Msa1128490:CDS |
| ATGGCAAGCGCACAATCATC+AGG | 0.408097 | 7_3:+80319332 | None:intergenic |
| ATAATTTATTGCAGGATCTT+CGG | 0.419155 | 7_3:-80319040 | Msa1128490:intron |
| TGTTTATTGCAGATTCAGTC+TGG | 0.425383 | 7_3:-80320073 | Msa1128490:intron |
| TTGACTTGAACAATTACATA+TGG | 0.430299 | 7_3:+80318840 | None:intergenic |
| GTGACGAATAATGCTTGATA+TGG | 0.433415 | 7_3:+80319313 | None:intergenic |
| AGTGTTATGCCATGGAAATA+AGG | 0.442011 | 7_3:+80318995 | None:intergenic |
| TGTACAAGATGAGAGCAAAA+AGG | 0.444181 | 7_3:+80318648 | None:intergenic |
| GTTGAAGAAGTTTATCCAAA+AGG | 0.446811 | 7_3:-80320030 | Msa1128490:CDS |
| GGACGTAAAAGGGAAATTGC+AGG | 0.448824 | 7_3:-80319720 | Msa1128490:intron |
| GAAATTCAATACGTTGCAAA+AGG | 0.451513 | 7_3:-80321759 | Msa1128490:intron |
| CGAACCATCATCGTTGAGAA+TGG | 0.453171 | 7_3:+80321644 | None:intergenic |
| TCAATGATCAATCATTCTTA+GGG | 0.454518 | 7_3:-80318821 | Msa1128490:three_prime_UTR |
| AACAAACAGTGGACGTAAAA+GGG | 0.455021 | 7_3:-80319730 | Msa1128490:CDS |
| CAACAGATAAAAGTTGTGTT+TGG | 0.468049 | 7_3:-80318903 | Msa1128490:three_prime_UTR |
| GTTACATCTCCGCTTCGGTC+AGG | 0.469021 | 7_3:+80321555 | None:intergenic |
| GGTACCTTGAAAGTAGAATC+AGG | 0.469238 | 7_3:+80319130 | None:intergenic |
| AAGCAAGGTACTCTGTTTCA+TGG | 0.469951 | 7_3:+80319291 | None:intergenic |
| CTTTGTCTTTCCCTTCTGCC+GGG | 0.472949 | 7_3:-80318759 | Msa1128490:three_prime_UTR |
| GTTGTAAATTGGAAATGCTT+CGG | 0.474209 | 7_3:+80321605 | None:intergenic |
| CTGTTGTGATTTCTGCTGCT+AGG | 0.485098 | 7_3:-80319942 | Msa1128490:CDS |
| TGAACGGAAGAATGAAGATC+TGG | 0.494831 | 7_3:+80321937 | None:intergenic |
| TTGTTTATAGCAATGGGAGT+TGG | 0.503772 | 7_3:-80319787 | Msa1128490:intron |
| ATCTCAAAAGAACTTGGCAT+TGG | 0.506508 | 7_3:-80318948 | Msa1128490:CDS |
| GCAAGCTCAAAATCAGAACC+TGG | 0.521132 | 7_3:+80319964 | None:intergenic |
| AAATCCATTCTCAACGATGA+TGG | 0.529327 | 7_3:-80321648 | Msa1128490:CDS |
| AGTTAGTTACATCTCCGCTT+CGG | 0.532930 | 7_3:+80321550 | None:intergenic |
| TACAACTCTTGTTATTAACA+TGG | 0.533004 | 7_3:-80318629 | Msa1128490:three_prime_UTR |
| TTTGTGAGTGAGTGAGATAA+TGG | 0.534568 | 7_3:-80321865 | Msa1128490:exon |
| GTTCTGTCTACTGTGTAAAT+GGG | 0.536017 | 7_3:-80320002 | Msa1128490:CDS |
| AATCTGGACCGTTGAGGACG+TGG | 0.537261 | 7_3:+80322020 | None:intergenic |
| AGAGACATCTCAAAAGAACT+TGG | 0.537783 | 7_3:-80318954 | Msa1128490:CDS |
| TTTGAACGGTGGATTAGAGA+AGG | 0.547024 | 7_3:+80321981 | None:intergenic |
| AGTACAATACACCCGGCAGA+AGG | 0.548331 | 7_3:+80318748 | None:intergenic |
| CACTCACTCACAAAACAACA+CGG | 0.564328 | 7_3:+80321874 | None:intergenic |
| TGTGCTACAGAAAGCAAATG+AGG | 0.565497 | 7_3:+80318785 | None:intergenic |
| TCACCCGCACCTTATTTCCA+TGG | 0.565832 | 7_3:-80319004 | Msa1128490:CDS |
| AATTCTTCAATGTATGCAGA+TGG | 0.567391 | 7_3:+80320919 | None:intergenic |
| AATTGCAAAGTGTTATGCCA+TGG | 0.570664 | 7_3:+80318987 | None:intergenic |
| TACAGAGGTGAGACCTGCAC+TGG | 0.572920 | 7_3:-80320953 | Msa1128490:CDS |
| GGAAGTTCTTCATCCAGTGC+AGG | 0.573658 | 7_3:+80320940 | None:intergenic |
| GGGAAGGATACTGAGGGCCC+AGG | 0.574847 | 7_3:-80319982 | Msa1128490:CDS |
| TTATGGAAATCAATTATGAA+CGG | 0.583311 | 7_3:+80321921 | None:intergenic |
| GCAACGTATTGAATTTCACC+AGG | 0.590563 | 7_3:+80321765 | None:intergenic |
| CAAGCTCAAAATCAGAACCT+GGG | 0.599793 | 7_3:+80319965 | None:intergenic |
| CCTTGAAAGTAGAATCAGGA+AGG | 0.604482 | 7_3:+80319134 | None:intergenic |
| TGTCTACTGTGTAAATGGGA+AGG | 0.606579 | 7_3:-80319998 | Msa1128490:CDS |
| TGGCAAGCGCACAATCATCA+GGG | 0.608171 | 7_3:+80319333 | None:intergenic |
| CTTTCAATGCCTGACCGAAG+CGG | 0.608367 | 7_3:-80321564 | Msa1128490:CDS |
| AGAGTACCTTGCTTCTCTTG+AGG | 0.615925 | 7_3:-80319282 | Msa1128490:intron |
| GTACAATACACCCGGCAGAA+GGG | 0.616091 | 7_3:+80318749 | None:intergenic |
| AATAGAGTCCACGTCCTCAA+CGG | 0.620231 | 7_3:-80322028 | None:intergenic |
| GTGCTACAGAAAGCAAATGA+GGG | 0.625446 | 7_3:+80318786 | None:intergenic |
| ATTTATTGCAGGATCTTCGG+AGG | 0.625709 | 7_3:-80319037 | Msa1128490:intron |
| GAATAAGACACACGTAACAA+TGG | 0.628157 | 7_3:+80318670 | None:intergenic |
| GTTGTAAATCTGGACCGTTG+AGG | 0.629839 | 7_3:+80322014 | None:intergenic |
| ATGCCATGGAAATAAGGTGC+GGG | 0.634497 | 7_3:+80319001 | None:intergenic |
| AGAAAGTTGAAATCGCGAAG+TGG | 0.636965 | 7_3:-80321806 | Msa1128490:CDS |
| AAGTTGTGTTTGGTCAAACA+CGG | 0.638229 | 7_3:-80318893 | Msa1128490:three_prime_UTR |
| ACTCACTCACAAAACAACAC+GGG | 0.645342 | 7_3:+80321875 | None:intergenic |
| TGCTACAGAAAGCAAATGAG+GGG | 0.646566 | 7_3:+80318787 | None:intergenic |
| CCGGCAGAAGGGAAAGACAA+AGG | 0.648109 | 7_3:+80318760 | None:intergenic |
| TCAGAACCTCAAGAGAAGCA+AGG | 0.655359 | 7_3:+80319276 | None:intergenic |
| TGTAAATGGGAAGGATACTG+AGG | 0.655670 | 7_3:-80319989 | Msa1128490:CDS |
| GTAAATGGGAAGGATACTGA+GGG | 0.655998 | 7_3:-80319988 | Msa1128490:CDS |
| GAATTACAGTACAATACACC+CGG | 0.670574 | 7_3:+80318741 | None:intergenic |
| CAAAGACGACCAACAAACAG+TGG | 0.675897 | 7_3:-80319741 | Msa1128490:CDS |
| GGCAAGCGCACAATCATCAG+GGG | 0.679461 | 7_3:+80319334 | None:intergenic |
| TATGTTTCAGGTCTGTACAG+AGG | 0.688165 | 7_3:-80320968 | Msa1128490:intron |
| ACGTATTGAATTTCACCAGG+AGG | 0.702006 | 7_3:+80321768 | None:intergenic |
| TATGCCATGGAAATAAGGTG+CGG | 0.767155 | 7_3:+80319000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTTAATTCTTTTTTA+TGG | + | chr7_3:80318720-80318739 | None:intergenic | 10.0% |
| !!! | ATCTTACATATATTTTTGAA+CGG | + | chr7_3:80318657-80318676 | None:intergenic | 15.0% |
| !!! | TTAATTGTTTTCTAATTCTT+AGG | - | chr7_3:80319105-80319124 | Msa1128490:intron | 15.0% |
| !!! | TAATTGTTTTCTAATTCTTA+GGG | - | chr7_3:80319106-80319125 | Msa1128490:intron | 15.0% |
| !!! | AATTTTTCAATTAATTGGAT+CGG | - | chr7_3:80319151-80319170 | Msa1128490:CDS | 15.0% |
| !!! | TAATTCTTTTGGTTAAAATA+AGG | - | chr7_3:80320294-80320313 | Msa1128490:intron | 15.0% |
| !!! | TTTTAAAATGACTGATAAAT+TGG | - | chr7_3:80320363-80320382 | Msa1128490:intron | 15.0% |
| !! | AAAATGATTATGTTAAAGTA+GGG | + | chr7_3:80320975-80320994 | None:intergenic | 15.0% |
| !! | AAAAATGATTATGTTAAAGT+AGG | + | chr7_3:80320976-80320995 | None:intergenic | 15.0% |
| !!! | ATCATTTTTATCCTATTTTT+AGG | - | chr7_3:80320987-80321006 | Msa1128490:intron | 15.0% |
| !! | TTTGTATATATATTCGAAAA+TGG | - | chr7_3:80321209-80321228 | Msa1128490:intron | 15.0% |
| !! | ATATAGGATTATATAATAGA+GGG | + | chr7_3:80321515-80321534 | None:intergenic | 15.0% |
| !! | AATATAGGATTATATAATAG+AGG | + | chr7_3:80321516-80321535 | None:intergenic | 15.0% |
| !! | TTATGGAAATCAATTATGAA+CGG | + | chr7_3:80318703-80318722 | None:intergenic | 20.0% |
| !! | TTTACTTAAAAATGAGCTTT+AGG | - | chr7_3:80319380-80319399 | Msa1128490:intron | 20.0% |
| !! | AATTTCAATAAGCAGAAAAT+TGG | + | chr7_3:80319452-80319471 | None:intergenic | 20.0% |
| !! | ATTAGAAGGAAATATTTAGT+TGG | - | chr7_3:80319516-80319535 | Msa1128490:intron | 20.0% |
| !! | TATTAAAGAAGAGATCTATT+TGG | + | chr7_3:80319978-80319997 | None:intergenic | 20.0% |
| !! | AAGTAAAATATTTGAGAGAA+AGG | + | chr7_3:80320253-80320272 | None:intergenic | 20.0% |
| !! | ATTAATACAACAAAGAATTG+TGG | + | chr7_3:80320278-80320297 | None:intergenic | 20.0% |
| !!! | CTTTGTTGTATTAATTCTTT+TGG | - | chr7_3:80320283-80320302 | Msa1128490:intron | 20.0% |
| !!! | TTTTTATCCTATTTTTAGGT+CGG | - | chr7_3:80320991-80321010 | Msa1128490:intron | 20.0% |
| !! | ATTAGATTGTCAAAAATAAG+TGG | + | chr7_3:80321168-80321187 | None:intergenic | 20.0% |
| !! | TATATATACAAAAAGAGACA+AGG | + | chr7_3:80321201-80321220 | None:intergenic | 20.0% |
| !! | TGCAATAAATTATAATCAGA+AGG | + | chr7_3:80321574-80321593 | None:intergenic | 20.0% |
| !! | TTCTGATTATAATTTATTGC+AGG | - | chr7_3:80321573-80321592 | Msa1128490:CDS | 20.0% |
| !! | TTTTCATTTCGTTGTAAATC+TGG | + | chr7_3:80318620-80318639 | None:intergenic | 25.0% |
| !!! | TTACATATATTTTTGAACGG+TGG | + | chr7_3:80318654-80318673 | None:intergenic | 25.0% |
| ! | GACAAATTGAAATGTAAAAG+TGG | + | chr7_3:80318927-80318946 | None:intergenic | 25.0% |
| !!! | AAGTGTGATTTGTTGTAAAT+TGG | + | chr7_3:80319030-80319049 | None:intergenic | 25.0% |
| ! | TAGGTAAGATCATTTATGTT+TGG | - | chr7_3:80319399-80319418 | Msa1128490:intron | 25.0% |
| ! | GTGAAAACATTGAAATTAGA+AGG | - | chr7_3:80319502-80319521 | Msa1128490:intron | 25.0% |
| ! | AAATATTTAGTTGGAGGTTA+GGG | - | chr7_3:80319525-80319544 | Msa1128490:intron | 25.0% |
| ! | TAAAGCAAAACAGGAAAATT+TGG | - | chr7_3:80319550-80319569 | Msa1128490:intron | 25.0% |
| ! | GACAATTTGATATATGTTTC+AGG | - | chr7_3:80319641-80319660 | Msa1128490:intron | 25.0% |
| ! | AAAATCTCAATCATGGAAAT+TGG | + | chr7_3:80319741-80319760 | None:intergenic | 25.0% |
| ! | GACATAAAAAATCTCAATCA+TGG | + | chr7_3:80319748-80319767 | None:intergenic | 25.0% |
| ! | AAGATTAACGGAATATCAAA+TGG | + | chr7_3:80319774-80319793 | None:intergenic | 25.0% |
| ! | TCACTTCAGTAAAAGATTAA+CGG | + | chr7_3:80319786-80319805 | None:intergenic | 25.0% |
| !! | ACAATGATTTTTGATGTTGA+GGG | - | chr7_3:80319811-80319830 | Msa1128490:intron | 25.0% |
| ! | ACAAATCTATACTTGTCAAA+AGG | + | chr7_3:80320072-80320091 | None:intergenic | 25.0% |
| ! | AGTAAAACAGCAATTAATCT+TGG | - | chr7_3:80320338-80320357 | Msa1128490:intron | 25.0% |
| !! | AACACTTTAAAAGAAAAGGA+GGG | - | chr7_3:80320407-80320426 | Msa1128490:intron | 25.0% |
| ! | TAAACAAAAGCCAAAGAAAA+AGG | + | chr7_3:80320821-80320840 | None:intergenic | 25.0% |
| ! | ATTCGAAAATGGTAAGATAT+AGG | - | chr7_3:80321220-80321239 | Msa1128490:intron | 25.0% |
| !!! | CTTTTGATTTATTTCTGTTC+AGG | - | chr7_3:80321264-80321283 | Msa1128490:intron | 25.0% |
| ! | CATAGGCTTAACATAAATAT+AGG | + | chr7_3:80321531-80321550 | None:intergenic | 25.0% |
| ! | ATAATTTATTGCAGGATCTT+CGG | - | chr7_3:80321581-80321600 | Msa1128490:CDS | 25.0% |
| !! | TTGACTTGAACAATTACATA+TGG | + | chr7_3:80321784-80321803 | None:intergenic | 25.0% |
| ! | TCAATGATCAATCATTCTTA+GGG | - | chr7_3:80321800-80321819 | Msa1128490:CDS | 25.0% |
| !!! | TACAACTCTTGTTATTAACA+TGG | - | chr7_3:80321992-80322011 | Msa1128490:five_prime_UTR | 25.0% |
| GAAATTCAATACGTTGCAAA+AGG | - | chr7_3:80318862-80318881 | Msa1128490:three_prime_UTR | 30.0% | |
| GTTGTAAATTGGAAATGCTT+CGG | + | chr7_3:80319019-80319038 | None:intergenic | 30.0% | |
| ACACACTTACTTGTTTAACA+TGG | + | chr7_3:80319344-80319363 | None:intergenic | 30.0% | |
| TTTATGTTTGGATTTGTGTG+TGG | - | chr7_3:80319411-80319430 | Msa1128490:intron | 30.0% | |
| TGCTTATTGAAATTGCTTGT+TGG | - | chr7_3:80319458-80319477 | Msa1128490:intron | 30.0% | |
| AGAAGGAAATATTTAGTTGG+AGG | - | chr7_3:80319519-80319538 | Msa1128490:intron | 30.0% | |
| GAAATATTTAGTTGGAGGTT+AGG | - | chr7_3:80319524-80319543 | Msa1128490:intron | 30.0% | |
| AATTCTTCAATGTATGCAGA+TGG | + | chr7_3:80319705-80319724 | None:intergenic | 30.0% | |
| CTGCATACATTGAAGAATTT+CGG | - | chr7_3:80319706-80319725 | Msa1128490:intron | 30.0% | |
| AACATCAAAAATCATTGTGC+GGG | + | chr7_3:80319809-80319828 | None:intergenic | 30.0% | |
| CAACATCAAAAATCATTGTG+CGG | + | chr7_3:80319810-80319829 | None:intergenic | 30.0% | |
| ! | CACAATGATTTTTGATGTTG+AGG | - | chr7_3:80319810-80319829 | Msa1128490:intron | 30.0% |
| ! | CAATGATTTTTGATGTTGAG+GGG | - | chr7_3:80319812-80319831 | Msa1128490:intron | 30.0% |
| !! | TTCGTTTTAAGCGTCTTTTA+AGG | - | chr7_3:80320180-80320199 | Msa1128490:intron | 30.0% |
| ! | GAGCAACACTTTAAAAGAAA+AGG | - | chr7_3:80320403-80320422 | Msa1128490:intron | 30.0% |
| ! | CAACACTTTAAAAGAAAAGG+AGG | - | chr7_3:80320406-80320425 | Msa1128490:intron | 30.0% |
| GTTGAAGAAGTTTATCCAAA+AGG | - | chr7_3:80320591-80320610 | Msa1128490:intron | 30.0% | |
| ! | AGTTAGTACTCCTTTTTCTT+TGG | - | chr7_3:80320808-80320827 | Msa1128490:intron | 30.0% |
| !! | TTGGCTTTTGTTTATAGCAA+TGG | - | chr7_3:80320827-80320846 | Msa1128490:intron | 30.0% |
| !! | TGGCTTTTGTTTATAGCAAT+GGG | - | chr7_3:80320828-80320847 | Msa1128490:intron | 30.0% |
| !! | AGTCAAAGAATGCTGATTTA+TGG | + | chr7_3:80321094-80321113 | None:intergenic | 30.0% |
| GATTGTCAAAAATAAGTGGA+TGG | + | chr7_3:80321164-80321183 | None:intergenic | 30.0% | |
| CAAAAATCAACGACTATCAT+AGG | + | chr7_3:80321548-80321567 | None:intergenic | 30.0% | |
| CAACAGATAAAAGTTGTGTT+TGG | - | chr7_3:80321718-80321737 | Msa1128490:intron | 30.0% | |
| GGTGAATAGCTGAATATATA+GGG | + | chr7_3:80321763-80321782 | None:intergenic | 30.0% | |
| TGGTGAATAGCTGAATATAT+AGG | + | chr7_3:80321764-80321783 | None:intergenic | 30.0% | |
| GTCAATGATCAATCATTCTT+AGG | - | chr7_3:80321799-80321818 | Msa1128490:CDS | 30.0% | |
| TTTGTGAGTGAGTGAGATAA+TGG | - | chr7_3:80318756-80318775 | Msa1128490:three_prime_UTR | 35.0% | |
| GGAATGAAAATGAAATGCTG+AGG | + | chr7_3:80318906-80318925 | None:intergenic | 35.0% | |
| AAATCCATTCTCAACGATGA+TGG | - | chr7_3:80318973-80318992 | Msa1128490:CDS | 35.0% | |
| !! | CAGGTATTGGTTACTTCATA+TGG | - | chr7_3:80319261-80319280 | Msa1128490:intron | 35.0% |
| !! | TGTGTGTGGAGAGTATTATA+AGG | - | chr7_3:80319425-80319444 | Msa1128490:intron | 35.0% |
| ! | TGAAATTGCTTGTTGGAACT+TGG | - | chr7_3:80319465-80319484 | Msa1128490:intron | 35.0% |
| GTTAGGGTATAAAGCAAAAC+AGG | - | chr7_3:80319541-80319560 | Msa1128490:intron | 35.0% | |
| ACAGCAACACAAGTCATATT+TGG | + | chr7_3:80319584-80319603 | None:intergenic | 35.0% | |
| ! | CAAAAGGCATGATTCATGAT+AGG | + | chr7_3:80320056-80320075 | None:intergenic | 35.0% |
| TGTTTATTGCAGATTCAGTC+TGG | - | chr7_3:80320548-80320567 | Msa1128490:intron | 35.0% | |
| TGTTCTGTCTACTGTGTAAA+TGG | - | chr7_3:80320618-80320637 | Msa1128490:intron | 35.0% | |
| GTTCTGTCTACTGTGTAAAT+GGG | - | chr7_3:80320619-80320638 | Msa1128490:intron | 35.0% | |
| ! | TCACACACCAGAAATTTTGT+GGG | + | chr7_3:80320710-80320729 | None:intergenic | 35.0% |
| ! | TTCACACACCAGAAATTTTG+TGG | + | chr7_3:80320711-80320730 | None:intergenic | 35.0% |
| TTGTTTATAGCAATGGGAGT+TGG | - | chr7_3:80320834-80320853 | Msa1128490:intron | 35.0% | |
| AACAAACAGTGGACGTAAAA+GGG | - | chr7_3:80320891-80320910 | Msa1128490:intron | 35.0% | |
| ! | CAAAGATGCAACTCTTTTTC+AGG | - | chr7_3:80321065-80321084 | Msa1128490:intron | 35.0% |
| GTGACGAATAATGCTTGATA+TGG | + | chr7_3:80321311-80321330 | None:intergenic | 35.0% | |
| GAATTCGATTTCTTGTAGCT+AGG | - | chr7_3:80321366-80321385 | Msa1128490:intron | 35.0% | |
| ATATGAAGCCTGTCAAGTTA+TGG | + | chr7_3:80321462-80321481 | None:intergenic | 35.0% | |
| AGTGTTATGCCATGGAAATA+AGG | + | chr7_3:80321629-80321648 | None:intergenic | 35.0% | |
| ! | AATTGCAAAGTGTTATGCCA+TGG | + | chr7_3:80321637-80321656 | None:intergenic | 35.0% |
| AGAGACATCTCAAAAGAACT+TGG | - | chr7_3:80321667-80321686 | Msa1128490:intron | 35.0% | |
| ATCTCAAAAGAACTTGGCAT+TGG | - | chr7_3:80321673-80321692 | Msa1128490:intron | 35.0% | |
| AAGTTGTGTTTGGTCAAACA+CGG | - | chr7_3:80321728-80321747 | Msa1128490:intron | 35.0% | |
| GAATTACAGTACAATACACC+CGG | + | chr7_3:80321883-80321902 | None:intergenic | 35.0% | |
| GAATAAGACACACGTAACAA+TGG | + | chr7_3:80321954-80321973 | None:intergenic | 35.0% | |
| TGTACAAGATGAGAGCAAAA+AGG | + | chr7_3:80321976-80321995 | None:intergenic | 35.0% | |
| !! | TTTGAACGGTGGATTAGAGA+AGG | + | chr7_3:80318643-80318662 | None:intergenic | 40.0% |
| TGAACGGAAGAATGAAGATC+TGG | + | chr7_3:80318687-80318706 | None:intergenic | 40.0% | |
| ACTCACTCACAAAACAACAC+GGG | + | chr7_3:80318749-80318768 | None:intergenic | 40.0% | |
| CACTCACTCACAAAACAACA+CGG | + | chr7_3:80318750-80318769 | None:intergenic | 40.0% | |
| AGAAAGTTGAAATCGCGAAG+TGG | - | chr7_3:80318815-80318834 | Msa1128490:three_prime_UTR | 40.0% | |
| TTTCTTCTCAATTCTCCTCC+TGG | - | chr7_3:80318838-80318857 | Msa1128490:three_prime_UTR | 40.0% | |
| ACGTATTGAATTTCACCAGG+AGG | + | chr7_3:80318856-80318875 | None:intergenic | 40.0% | |
| GCAACGTATTGAATTTCACC+AGG | + | chr7_3:80318859-80318878 | None:intergenic | 40.0% | |
| AGTTAGTTACATCTCCGCTT+CGG | + | chr7_3:80319074-80319093 | None:intergenic | 40.0% | |
| TAACACAAATCCCCTGACTT+GGG | - | chr7_3:80319225-80319244 | Msa1128490:intron | 40.0% | |
| ! | ATTGCTACTTGAGCAGTTCT+AGG | + | chr7_3:80319315-80319334 | None:intergenic | 40.0% |
| TTTGTGCTAAGCTGTATCGT+TGG | - | chr7_3:80319605-80319624 | Msa1128490:CDS | 40.0% | |
| ! | TATGTTTCAGGTCTGTACAG+AGG | - | chr7_3:80319653-80319672 | Msa1128490:intron | 40.0% |
| CTCAATCATGGAAATTGGAG+AGG | + | chr7_3:80319736-80319755 | None:intergenic | 40.0% | |
| TAAGTTCACGCAGATGATTG+AGG | + | chr7_3:80319926-80319945 | None:intergenic | 40.0% | |
| ! | GAAAACTGAAAAGGCTTTGG+TGG | + | chr7_3:80320007-80320026 | None:intergenic | 40.0% |
| TGGGAAAACTGAAAAGGCTT+TGG | + | chr7_3:80320010-80320029 | None:intergenic | 40.0% | |
| ATCTGGTGGGAAAACTGAAA+AGG | + | chr7_3:80320016-80320035 | None:intergenic | 40.0% | |
| ! | TTTTCAGTTTTCCCACCAGA+TGG | - | chr7_3:80320015-80320034 | Msa1128490:CDS | 40.0% |
| ! | TTTCAGTTTTCCCACCAGAT+GGG | - | chr7_3:80320016-80320035 | Msa1128490:CDS | 40.0% |
| ACATTGTAACTAACCCCATC+TGG | + | chr7_3:80320033-80320052 | None:intergenic | 40.0% | |
| CATATATGAGTCTCACTTCC+TGG | + | chr7_3:80320139-80320158 | None:intergenic | 40.0% | |
| !! | AAAGAAAAGGAGGGAGCATT+TGG | - | chr7_3:80320416-80320435 | Msa1128490:intron | 40.0% |
| ATGATGCATGCAAAAGACAC+AGG | + | chr7_3:80320508-80320527 | None:intergenic | 40.0% | |
| ! | TAGACAGAACAGACACCTTT+TGG | + | chr7_3:80320609-80320628 | None:intergenic | 40.0% |
| TGTCTACTGTGTAAATGGGA+AGG | - | chr7_3:80320623-80320642 | Msa1128490:intron | 40.0% | |
| TGTAAATGGGAAGGATACTG+AGG | - | chr7_3:80320632-80320651 | Msa1128490:intron | 40.0% | |
| GTAAATGGGAAGGATACTGA+GGG | - | chr7_3:80320633-80320652 | Msa1128490:intron | 40.0% | |
| CAAGCTCAAAATCAGAACCT+GGG | + | chr7_3:80320659-80320678 | None:intergenic | 40.0% | |
| ! | CTTTTACGTCCACTGTTTGT+TGG | + | chr7_3:80320892-80320911 | None:intergenic | 40.0% |
| CAACAAACAGTGGACGTAAA+AGG | - | chr7_3:80320890-80320909 | Msa1128490:intron | 40.0% | |
| !! | ATGAGCACCGACCTAAAAAT+AGG | + | chr7_3:80321001-80321020 | None:intergenic | 40.0% |
| !!! | GGTGCTCATTATTTTGAGGA+AGG | - | chr7_3:80321012-80321031 | Msa1128490:intron | 40.0% |
| ATAAGTGGATGGACATGTAC+AGG | + | chr7_3:80321153-80321172 | None:intergenic | 40.0% | |
| ! | AAGCAAGGTACTCTGTTTCA+TGG | + | chr7_3:80321333-80321352 | None:intergenic | 40.0% |
| GCTAATGACCATAACTTGAC+AGG | - | chr7_3:80321451-80321470 | Msa1128490:intron | 40.0% | |
| CCTTGAAAGTAGAATCAGGA+AGG | + | chr7_3:80321490-80321509 | None:intergenic | 40.0% | |
| CCTTCCTGATTCTACTTTCA+AGG | - | chr7_3:80321487-80321506 | Msa1128490:intron | 40.0% | |
| GGTACCTTGAAAGTAGAATC+AGG | + | chr7_3:80321494-80321513 | None:intergenic | 40.0% | |
| ATTTATTGCAGGATCTTCGG+AGG | - | chr7_3:80321584-80321603 | Msa1128490:CDS | 40.0% | |
| TATGCCATGGAAATAAGGTG+CGG | + | chr7_3:80321624-80321643 | None:intergenic | 40.0% | |
| TGCTACAGAAAGCAAATGAG+GGG | + | chr7_3:80321837-80321856 | None:intergenic | 40.0% | |
| GTGCTACAGAAAGCAAATGA+GGG | + | chr7_3:80321838-80321857 | None:intergenic | 40.0% | |
| TGTGCTACAGAAAGCAAATG+AGG | + | chr7_3:80321839-80321858 | None:intergenic | 40.0% | |
| GTTGTAAATCTGGACCGTTG+AGG | + | chr7_3:80318610-80318629 | None:intergenic | 45.0% | |
| CGAACCATCATCGTTGAGAA+TGG | + | chr7_3:80318980-80318999 | None:intergenic | 45.0% | |
| GTAACACAAATCCCCTGACT+TGG | - | chr7_3:80319224-80319243 | Msa1128490:intron | 45.0% | |
| TACTTCATATGGCGAGCTTG+AGG | - | chr7_3:80319272-80319291 | Msa1128490:intron | 45.0% | |
| ! | AACTGAAAAGGCTTTGGTGG+TGG | + | chr7_3:80320004-80320023 | None:intergenic | 45.0% |
| ! | TTCAGTTTTCCCACCAGATG+GGG | - | chr7_3:80320017-80320036 | Msa1128490:CDS | 45.0% |
| TGTAACTAACCCCATCTGGT+GGG | + | chr7_3:80320029-80320048 | None:intergenic | 45.0% | |
| TTGTAACTAACCCCATCTGG+TGG | + | chr7_3:80320030-80320049 | None:intergenic | 45.0% | |
| CTCACTTCCTGGCTACAATA+GGG | + | chr7_3:80320128-80320147 | None:intergenic | 45.0% | |
| TCTCACTTCCTGGCTACAAT+AGG | + | chr7_3:80320129-80320148 | None:intergenic | 45.0% | |
| CATCATCGCTTGCATAACAC+AGG | - | chr7_3:80320522-80320541 | Msa1128490:intron | 45.0% | |
| GCAAGCTCAAAATCAGAACC+TGG | + | chr7_3:80320660-80320679 | None:intergenic | 45.0% | |
| CTGTTGTGATTTCTGCTGCT+AGG | - | chr7_3:80320679-80320698 | Msa1128490:intron | 45.0% | |
| GGCATAGCCCACAAAATTTC+TGG | - | chr7_3:80320700-80320719 | Msa1128490:intron | 45.0% | |
| !! | ATGGGAGTTGGTGCTCAATT+TGG | - | chr7_3:80320846-80320865 | Msa1128490:intron | 45.0% |
| CAAAGACGACCAACAAACAG+TGG | - | chr7_3:80320880-80320899 | Msa1128490:intron | 45.0% | |
| GGACGTAAAAGGGAAATTGC+AGG | - | chr7_3:80320901-80320920 | Msa1128490:intron | 45.0% | |
| !! | GGTCGGTGCTCATTATTTTG+AGG | - | chr7_3:80321008-80321027 | Msa1128490:intron | 45.0% |
| ! | AGAGTACCTTGCTTCTCTTG+AGG | - | chr7_3:80321339-80321358 | Msa1128490:intron | 45.0% |
| TCAGAACCTCAAGAGAAGCA+AGG | + | chr7_3:80321348-80321367 | None:intergenic | 45.0% | |
| ATGCCATGGAAATAAGGTGC+GGG | + | chr7_3:80321623-80321642 | None:intergenic | 45.0% | |
| !!! | TATTTAATTTTTCAATTAAT+TGG | - | chr7_3:80319146-80319165 | Msa1128490:CDS | 5.0% |
| CTTTCAATGCCTGACCGAAG+CGG | - | chr7_3:80319057-80319076 | Msa1128490:intron | 50.0% | |
| AACCTGCTGCATGCAGGTAT+TGG | - | chr7_3:80319248-80319267 | Msa1128490:intron | 50.0% | |
| AACCAATACCTGCATGCAGC+AGG | + | chr7_3:80319253-80319272 | None:intergenic | 50.0% | |
| GGAAGTTCTTCATCCAGTGC+AGG | + | chr7_3:80319684-80319703 | None:intergenic | 50.0% | |
| ACGTGAACCCTATTGTAGCC+AGG | - | chr7_3:80320118-80320137 | Msa1128490:intron | 50.0% | |
| TGGCAAGCGCACAATCATCA+GGG | + | chr7_3:80321291-80321310 | None:intergenic | 50.0% | |
| ATGGCAAGCGCACAATCATC+AGG | + | chr7_3:80321292-80321311 | None:intergenic | 50.0% | |
| ! | TCACCCGCACCTTATTTCCA+TGG | - | chr7_3:80321617-80321636 | Msa1128490:CDS | 50.0% |
| CCTTTGTCTTTCCCTTCTGC+CGG | - | chr7_3:80321861-80321880 | Msa1128490:exon | 50.0% | |
| CTTTGTCTTTCCCTTCTGCC+GGG | - | chr7_3:80321862-80321881 | Msa1128490:exon | 50.0% | |
| GTACAATACACCCGGCAGAA+GGG | + | chr7_3:80321875-80321894 | None:intergenic | 50.0% | |
| AGTACAATACACCCGGCAGA+AGG | + | chr7_3:80321876-80321895 | None:intergenic | 50.0% | |
| AATCTGGACCGTTGAGGACG+TGG | + | chr7_3:80318604-80318623 | None:intergenic | 55.0% | |
| GTTACATCTCCGCTTCGGTC+AGG | + | chr7_3:80319069-80319088 | None:intergenic | 55.0% | |
| TGCAGCAGGTTCCCAAGTCA+GGG | + | chr7_3:80319239-80319258 | None:intergenic | 55.0% | |
| ATGCAGCAGGTTCCCAAGTC+AGG | + | chr7_3:80319240-80319259 | None:intergenic | 55.0% | |
| TACAGAGGTGAGACCTGCAC+TGG | - | chr7_3:80319668-80319687 | Msa1128490:intron | 55.0% | |
| GGCAAGCGCACAATCATCAG+GGG | + | chr7_3:80321290-80321309 | None:intergenic | 55.0% | |
| GGAAATAAGGTGCGGGTGAC+TGG | + | chr7_3:80321616-80321635 | None:intergenic | 55.0% | |
| CCGGCAGAAGGGAAAGACAA+AGG | + | chr7_3:80321864-80321883 | None:intergenic | 55.0% | |
| GCAGCAGGTTCCCAAGTCAG+GGG | + | chr7_3:80319238-80319257 | None:intergenic | 60.0% | |
| CTTGGGAACCTGCTGCATGC+AGG | - | chr7_3:80319242-80319261 | Msa1128490:intron | 60.0% | |
| GGGAAGGATACTGAGGGCCC+AGG | - | chr7_3:80320639-80320658 | Msa1128490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80318600 | 80322043 | 80318600 | ID=Msa1128490;Name=Msa1128490 |
| chr7_3 | mRNA | 80318600 | 80322043 | 80318600 | ID=Msa1128490-mRNA-1;Parent=Msa1128490;Name=Msa1128490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=175|0.87|1|1|1|1|9|341|275 |
| chr7_3 | exon | 80318600 | 80319048 | 80318600 | ID=Msa1128490-mRNA-1:exon:22975;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80319135 | 80319170 | 80319135 | ID=Msa1128490-mRNA-1:exon:22974;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80319283 | 80319357 | 80319283 | ID=Msa1128490-mRNA-1:exon:22973;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80319557 | 80319634 | 80319557 | ID=Msa1128490-mRNA-1:exon:22972;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80319721 | 80319799 | 80319721 | ID=Msa1128490-mRNA-1:exon:22971;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80319922 | 80320083 | 80319922 | ID=Msa1128490-mRNA-1:exon:22970;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80320916 | 80320980 | 80320916 | ID=Msa1128490-mRNA-1:exon:22969;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80321560 | 80321675 | 80321560 | ID=Msa1128490-mRNA-1:exon:22968;Parent=Msa1128490-mRNA-1 |
| chr7_3 | exon | 80321760 | 80322043 | 80321760 | ID=Msa1128490-mRNA-1:exon:22967;Parent=Msa1128490-mRNA-1 |
| chr7_3 | five_prime_UTR | 80321869 | 80322043 | 80321869 | ID=Msa1128490-mRNA-1:five_prime_utr;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80321760 | 80321868 | 80321760 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80321560 | 80321675 | 80321560 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80320916 | 80320980 | 80320916 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80319922 | 80320083 | 80319922 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80319721 | 80319799 | 80319721 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80319557 | 80319634 | 80319557 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80319283 | 80319357 | 80319283 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80319135 | 80319170 | 80319135 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | CDS | 80318941 | 80319048 | 80318941 | ID=Msa1128490-mRNA-1:cds;Parent=Msa1128490-mRNA-1 |
| chr7_3 | three_prime_UTR | 80318600 | 80318940 | 80318600 | ID=Msa1128490-mRNA-1:three_prime_utr;Parent=Msa1128490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
