Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0242320 | Msa0629840 | 0.936545 | 1.463126e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGGGCTAAAATTT+TGG | 0.199599 | 4_3:-11213122 | Msa0629840:exon |
| TTCATCTGAGCTTTCATATA+AGG | 0.208720 | 4_3:-11213213 | Msa0629840:CDS |
| AGTCATGCGATGAAAATAAA+AGG | 0.286603 | 4_3:-11215161 | Msa0629840:CDS |
| TCATCTGAGCTTTCATATAA+GGG | 0.338911 | 4_3:-11213212 | Msa0629840:CDS |
| TTGTTGATGTTGTCGAAGTA+TGG | 0.351172 | 4_3:-11213181 | Msa0629840:CDS |
| TGTTGTCGAAGTATGGAATA+AGG | 0.411409 | 4_3:-11213174 | Msa0629840:CDS |
| GCAGACTATAACTAACAAAC+AGG | 0.437590 | 4_3:-11215124 | Msa0629840:intron |
| GTCATGCGATGAAAATAAAA+GGG | 0.510471 | 4_3:-11215160 | Msa0629840:CDS |
| ACAAAGCTTGAATGTTCTGA+AGG | 0.568373 | 4_3:-11215187 | Msa0629840:CDS |
| CATCTGAGCTTTCATATAAG+GGG | 0.571128 | 4_3:-11213211 | Msa0629840:CDS |
| TAAGGAGCAGACAAATATGT+TGG | 0.571260 | 4_3:-11213156 | Msa0629840:CDS |
| ATGTTTGATTAGGAAGAATG+TGG | 0.592032 | 4_3:-11213241 | Msa0629840:intron |
| AAGCTTGAATGTTCTGAAGG+TGG | 0.608655 | 4_3:-11215184 | Msa0629840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTGTCATTA+TGG | - | chr4_3:11214274-11214293 | Msa0629840:intron | 10.0% |
| !!! | TTTTTTTTATTTTGTCATTA+TGG | - | chr4_3:11214274-11214293 | Msa0629840:intron | 10.0% |
| !! | AAAATATGTAAATCATGGAA+AGG | + | chr4_3:11213388-11213407 | None:intergenic | 20.0% |
| !! | TAACGAAAATATGTAAATCA+TGG | + | chr4_3:11213393-11213412 | None:intergenic | 20.0% |
| !! | TTAGAATGTAATGAAAATAG+TGG | + | chr4_3:11213514-11213533 | None:intergenic | 20.0% |
| !!! | TACATTCTAATTGTTGTTTT+AGG | - | chr4_3:11213524-11213543 | Msa0629840:intron | 20.0% |
| !!! | TTGTTGTTTTAGGATTTTAA+TGG | - | chr4_3:11213534-11213553 | Msa0629840:intron | 20.0% |
| !! | TTATATAAGACTTCAAGAAA+TGG | + | chr4_3:11213986-11214005 | None:intergenic | 20.0% |
| !!! | ATTTGGACTTCAATTTTATT+TGG | - | chr4_3:11214101-11214120 | Msa0629840:intron | 20.0% |
| !! | TATAGTCAAAAAGTAGAAAT+AGG | + | chr4_3:11214232-11214251 | None:intergenic | 20.0% |
| !!! | TTTGACTATACTTTTTTTCT+TGG | - | chr4_3:11214242-11214261 | Msa0629840:intron | 20.0% |
| !!! | TTGTCATTATGGTTTTTAAT+TGG | - | chr4_3:11214285-11214304 | Msa0629840:intron | 20.0% |
| !! | AATTTCAGAGAAAGAAATTA+TGG | + | chr4_3:11214665-11214684 | None:intergenic | 20.0% |
| !!! | GGATTTTAAACCAATTAATA+TGG | - | chr4_3:11214767-11214786 | Msa0629840:intron | 20.0% |
| !!! | TTATCAATCTTTTCCATTTT+AGG | - | chr4_3:11214992-11215011 | Msa0629840:intron | 20.0% |
| !! | AAAATATGTAAATCATGGAA+AGG | + | chr4_3:11213388-11213407 | None:intergenic | 20.0% |
| !! | TAACGAAAATATGTAAATCA+TGG | + | chr4_3:11213393-11213412 | None:intergenic | 20.0% |
| !! | TTAGAATGTAATGAAAATAG+TGG | + | chr4_3:11213514-11213533 | None:intergenic | 20.0% |
| !!! | TACATTCTAATTGTTGTTTT+AGG | - | chr4_3:11213524-11213543 | Msa0629840:intron | 20.0% |
| !!! | TTGTTGTTTTAGGATTTTAA+TGG | - | chr4_3:11213534-11213553 | Msa0629840:intron | 20.0% |
| !! | TTATATAAGACTTCAAGAAA+TGG | + | chr4_3:11213986-11214005 | None:intergenic | 20.0% |
| !!! | ATTTGGACTTCAATTTTATT+TGG | - | chr4_3:11214101-11214120 | Msa0629840:intron | 20.0% |
| !! | TATAGTCAAAAAGTAGAAAT+AGG | + | chr4_3:11214232-11214251 | None:intergenic | 20.0% |
| !!! | TTTGACTATACTTTTTTTCT+TGG | - | chr4_3:11214242-11214261 | Msa0629840:intron | 20.0% |
| !!! | TTGTCATTATGGTTTTTAAT+TGG | - | chr4_3:11214285-11214304 | Msa0629840:intron | 20.0% |
| !! | AATTTCAGAGAAAGAAATTA+TGG | + | chr4_3:11214665-11214684 | None:intergenic | 20.0% |
| !!! | GGATTTTAAACCAATTAATA+TGG | - | chr4_3:11214767-11214786 | Msa0629840:intron | 20.0% |
| !!! | TTATCAATCTTTTCCATTTT+AGG | - | chr4_3:11214992-11215011 | Msa0629840:intron | 20.0% |
| ! | AATTCTACTACTCTTTAGAT+AGG | - | chr4_3:11213297-11213316 | Msa0629840:intron | 25.0% |
| ! | AATCATGGAAAGGATAATTA+TGG | + | chr4_3:11213378-11213397 | None:intergenic | 25.0% |
| ! | TATCATGATTCAAAAAGGTA+GGG | + | chr4_3:11213871-11213890 | None:intergenic | 25.0% |
| ! | ATATCATGATTCAAAAAGGT+AGG | + | chr4_3:11213872-11213891 | None:intergenic | 25.0% |
| ! | AGTCATATCATGATTCAAAA+AGG | + | chr4_3:11213876-11213895 | None:intergenic | 25.0% |
| !!! | TTGCTATTTTTCAATTTCCA+AGG | - | chr4_3:11213919-11213938 | Msa0629840:intron | 25.0% |
| !! | CTTAGTTTGATTGTGTTATT+TGG | - | chr4_3:11214084-11214103 | Msa0629840:intron | 25.0% |
| !!! | ACTTCAATTTTATTTGGTGA+AGG | - | chr4_3:11214107-11214126 | Msa0629840:intron | 25.0% |
| ! | ACAAGTATAATACTCATTTC+TGG | - | chr4_3:11214356-11214375 | Msa0629840:intron | 25.0% |
| !!! | GTTTGTTAAGCAAATACTTT+TGG | - | chr4_3:11214380-11214399 | Msa0629840:intron | 25.0% |
| !!! | CAAATACTTTTGGTAATTTG+TGG | - | chr4_3:11214390-11214409 | Msa0629840:intron | 25.0% |
| ! | CATTATAAATGAATTGTGGT+AGG | + | chr4_3:11214473-11214492 | None:intergenic | 25.0% |
| ! | GAGTCATTATAAATGAATTG+TGG | + | chr4_3:11214477-11214496 | None:intergenic | 25.0% |
| ! | TAAAAATGGAAAAGGATACA+TGG | + | chr4_3:11214524-11214543 | None:intergenic | 25.0% |
| ! | TCTGGAAATAAAAATGGAAA+AGG | + | chr4_3:11214532-11214551 | None:intergenic | 25.0% |
| ! | TTATTATTCCTAACATGCAA+CGG | + | chr4_3:11214555-11214574 | None:intergenic | 25.0% |
| ! | ATCCTATACAAAAACAATGA+GGG | + | chr4_3:11214751-11214770 | None:intergenic | 25.0% |
| ! | AATCCTATACAAAAACAATG+AGG | + | chr4_3:11214752-11214771 | None:intergenic | 25.0% |
| ! | TAAACCAATTAATATGGACA+TGG | - | chr4_3:11214773-11214792 | Msa0629840:intron | 25.0% |
| !!! | TTCCATTTTAGGACTTTTAT+TGG | - | chr4_3:11215003-11215022 | Msa0629840:intron | 25.0% |
| ! | ATCCAATAAAAGTCCTAAAA+TGG | + | chr4_3:11215008-11215027 | None:intergenic | 25.0% |
| ! | ATTGGATCTTATGTTTGATT+AGG | - | chr4_3:11215021-11215040 | Msa0629840:intron | 25.0% |
| ! | AATTCTACTACTCTTTAGAT+AGG | - | chr4_3:11213297-11213316 | Msa0629840:intron | 25.0% |
| ! | AATCATGGAAAGGATAATTA+TGG | + | chr4_3:11213378-11213397 | None:intergenic | 25.0% |
| ! | TATCATGATTCAAAAAGGTA+GGG | + | chr4_3:11213871-11213890 | None:intergenic | 25.0% |
| ! | ATATCATGATTCAAAAAGGT+AGG | + | chr4_3:11213872-11213891 | None:intergenic | 25.0% |
| ! | AGTCATATCATGATTCAAAA+AGG | + | chr4_3:11213876-11213895 | None:intergenic | 25.0% |
| !!! | TTGCTATTTTTCAATTTCCA+AGG | - | chr4_3:11213919-11213938 | Msa0629840:intron | 25.0% |
| !! | CTTAGTTTGATTGTGTTATT+TGG | - | chr4_3:11214084-11214103 | Msa0629840:intron | 25.0% |
| !!! | ACTTCAATTTTATTTGGTGA+AGG | - | chr4_3:11214107-11214126 | Msa0629840:intron | 25.0% |
| ! | ACAAGTATAATACTCATTTC+TGG | - | chr4_3:11214356-11214375 | Msa0629840:intron | 25.0% |
| !!! | GTTTGTTAAGCAAATACTTT+TGG | - | chr4_3:11214380-11214399 | Msa0629840:intron | 25.0% |
| !!! | CAAATACTTTTGGTAATTTG+TGG | - | chr4_3:11214390-11214409 | Msa0629840:intron | 25.0% |
| ! | CATTATAAATGAATTGTGGT+AGG | + | chr4_3:11214473-11214492 | None:intergenic | 25.0% |
| ! | GAGTCATTATAAATGAATTG+TGG | + | chr4_3:11214477-11214496 | None:intergenic | 25.0% |
| ! | TAAAAATGGAAAAGGATACA+TGG | + | chr4_3:11214524-11214543 | None:intergenic | 25.0% |
| ! | TCTGGAAATAAAAATGGAAA+AGG | + | chr4_3:11214532-11214551 | None:intergenic | 25.0% |
| ! | TTATTATTCCTAACATGCAA+CGG | + | chr4_3:11214555-11214574 | None:intergenic | 25.0% |
| ! | ATCCTATACAAAAACAATGA+GGG | + | chr4_3:11214751-11214770 | None:intergenic | 25.0% |
| ! | AATCCTATACAAAAACAATG+AGG | + | chr4_3:11214752-11214771 | None:intergenic | 25.0% |
| ! | TAAACCAATTAATATGGACA+TGG | - | chr4_3:11214773-11214792 | Msa0629840:intron | 25.0% |
| !!! | TTCCATTTTAGGACTTTTAT+TGG | - | chr4_3:11215003-11215022 | Msa0629840:intron | 25.0% |
| ! | ATCCAATAAAAGTCCTAAAA+TGG | + | chr4_3:11215008-11215027 | None:intergenic | 25.0% |
| ! | ATTGGATCTTATGTTTGATT+AGG | - | chr4_3:11215021-11215040 | Msa0629840:intron | 25.0% |
| AGTCATGCGATGAAAATAAA+AGG | - | chr4_3:11213111-11213130 | Msa0629840:exon | 30.0% | |
| GTCATGCGATGAAAATAAAA+GGG | - | chr4_3:11213112-11213131 | Msa0629840:exon | 30.0% | |
| ATAACAACAAACTGATGCAT+AGG | + | chr4_3:11213350-11213369 | None:intergenic | 30.0% | |
| TTCTGCTGTGAAAATCAATT+TGG | - | chr4_3:11213454-11213473 | Msa0629840:intron | 30.0% | |
| AAGAGGATAAGTAAAGAGTA+TGG | + | chr4_3:11213748-11213767 | None:intergenic | 30.0% | |
| ATAGCAAAAACATAGGTAAG+AGG | + | chr4_3:11213765-11213784 | None:intergenic | 30.0% | |
| !! | TCTTACCTATGTTTTTGCTA+TGG | - | chr4_3:11213764-11213783 | Msa0629840:intron | 30.0% |
| TGTATCCATAGCAAAAACAT+AGG | + | chr4_3:11213772-11213791 | None:intergenic | 30.0% | |
| ACTCATCTTTCTTATAGAGA+AGG | - | chr4_3:11213943-11213962 | Msa0629840:intron | 30.0% | |
| TATAACCAAATCATTGTGTG+TGG | - | chr4_3:11214001-11214020 | Msa0629840:intron | 30.0% | |
| !! | TGGTTTTTAATTGGCATACT+TGG | - | chr4_3:11214294-11214313 | Msa0629840:intron | 30.0% |
| !! | CTTTTGGTAATTTGTGGAAT+TGG | - | chr4_3:11214396-11214415 | Msa0629840:intron | 30.0% |
| ATTGGTTGATCACATTCTAA+TGG | - | chr4_3:11214414-11214433 | Msa0629840:intron | 30.0% | |
| AGTCTAAAGACTAATGAGTA+AGG | + | chr4_3:11214622-11214641 | None:intergenic | 30.0% | |
| AGAGAAAGAAATTATGGAAG+TGG | + | chr4_3:11214659-11214678 | None:intergenic | 30.0% | |
| ACAGAGAGTAGAAAAATAAG+TGG | + | chr4_3:11214689-11214708 | None:intergenic | 30.0% | |
| !!! | ATCCCTCATTGTTTTTGTAT+AGG | - | chr4_3:11214746-11214765 | Msa0629840:intron | 30.0% |
| TTCACCATGTCCATATTAAT+TGG | + | chr4_3:11214780-11214799 | None:intergenic | 30.0% | |
| ! | GAGAAAGAAAAATGGCTTTT+GGG | + | chr4_3:11214879-11214898 | None:intergenic | 30.0% |
| ! | TTGTCATTTGGTCAGTTATT+TGG | - | chr4_3:11214913-11214932 | Msa0629840:intron | 30.0% |
| ATGTTTGATTAGGAAGAATG+TGG | - | chr4_3:11215031-11215050 | Msa0629840:intron | 30.0% | |
| TTCATCTGAGCTTTCATATA+AGG | - | chr4_3:11215059-11215078 | Msa0629840:intron | 30.0% | |
| TCATCTGAGCTTTCATATAA+GGG | - | chr4_3:11215060-11215079 | Msa0629840:intron | 30.0% | |
| !!! | GTCACTTTTAAGATTGAGAA+GGG | - | chr4_3:11215138-11215157 | Msa0629840:CDS | 30.0% |
| ! | ATTGAGAAGGGCTAAAATTT+TGG | - | chr4_3:11215150-11215169 | Msa0629840:CDS | 30.0% |
| !!! | AAGGGCTAAAATTTTGGTTT+TGG | - | chr4_3:11215156-11215175 | Msa0629840:CDS | 30.0% |
| AAAAGAGAACTCACGAAAAA+AGG | + | chr4_3:11215189-11215208 | None:intergenic | 30.0% | |
| AGTCATGCGATGAAAATAAA+AGG | - | chr4_3:11213111-11213130 | Msa0629840:exon | 30.0% | |
| GTCATGCGATGAAAATAAAA+GGG | - | chr4_3:11213112-11213131 | Msa0629840:exon | 30.0% | |
| ATAACAACAAACTGATGCAT+AGG | + | chr4_3:11213350-11213369 | None:intergenic | 30.0% | |
| TTCTGCTGTGAAAATCAATT+TGG | - | chr4_3:11213454-11213473 | Msa0629840:intron | 30.0% | |
| AAGAGGATAAGTAAAGAGTA+TGG | + | chr4_3:11213748-11213767 | None:intergenic | 30.0% | |
| ATAGCAAAAACATAGGTAAG+AGG | + | chr4_3:11213765-11213784 | None:intergenic | 30.0% | |
| !! | TCTTACCTATGTTTTTGCTA+TGG | - | chr4_3:11213764-11213783 | Msa0629840:intron | 30.0% |
| TGTATCCATAGCAAAAACAT+AGG | + | chr4_3:11213772-11213791 | None:intergenic | 30.0% | |
| ACTCATCTTTCTTATAGAGA+AGG | - | chr4_3:11213943-11213962 | Msa0629840:intron | 30.0% | |
| TATAACCAAATCATTGTGTG+TGG | - | chr4_3:11214001-11214020 | Msa0629840:intron | 30.0% | |
| !! | TGGTTTTTAATTGGCATACT+TGG | - | chr4_3:11214294-11214313 | Msa0629840:intron | 30.0% |
| !! | CTTTTGGTAATTTGTGGAAT+TGG | - | chr4_3:11214396-11214415 | Msa0629840:intron | 30.0% |
| ATTGGTTGATCACATTCTAA+TGG | - | chr4_3:11214414-11214433 | Msa0629840:intron | 30.0% | |
| AGTCTAAAGACTAATGAGTA+AGG | + | chr4_3:11214622-11214641 | None:intergenic | 30.0% | |
| AGAGAAAGAAATTATGGAAG+TGG | + | chr4_3:11214659-11214678 | None:intergenic | 30.0% | |
| ACAGAGAGTAGAAAAATAAG+TGG | + | chr4_3:11214689-11214708 | None:intergenic | 30.0% | |
| !!! | ATCCCTCATTGTTTTTGTAT+AGG | - | chr4_3:11214746-11214765 | Msa0629840:intron | 30.0% |
| TTCACCATGTCCATATTAAT+TGG | + | chr4_3:11214780-11214799 | None:intergenic | 30.0% | |
| ! | GAGAAAGAAAAATGGCTTTT+GGG | + | chr4_3:11214879-11214898 | None:intergenic | 30.0% |
| ! | TTGTCATTTGGTCAGTTATT+TGG | - | chr4_3:11214913-11214932 | Msa0629840:intron | 30.0% |
| ATGTTTGATTAGGAAGAATG+TGG | - | chr4_3:11215031-11215050 | Msa0629840:intron | 30.0% | |
| TTCATCTGAGCTTTCATATA+AGG | - | chr4_3:11215059-11215078 | Msa0629840:intron | 30.0% | |
| TCATCTGAGCTTTCATATAA+GGG | - | chr4_3:11215060-11215079 | Msa0629840:intron | 30.0% | |
| !!! | GTCACTTTTAAGATTGAGAA+GGG | - | chr4_3:11215138-11215157 | Msa0629840:CDS | 30.0% |
| ! | ATTGAGAAGGGCTAAAATTT+TGG | - | chr4_3:11215150-11215169 | Msa0629840:CDS | 30.0% |
| !!! | AAGGGCTAAAATTTTGGTTT+TGG | - | chr4_3:11215156-11215175 | Msa0629840:CDS | 30.0% |
| AAAAGAGAACTCACGAAAAA+AGG | + | chr4_3:11215189-11215208 | None:intergenic | 30.0% | |
| ACAAAGCTTGAATGTTCTGA+AGG | - | chr4_3:11213085-11213104 | Msa0629840:three_prime_UTR | 35.0% | |
| GCAGACTATAACTAACAAAC+AGG | - | chr4_3:11213148-11213167 | Msa0629840:CDS | 35.0% | |
| GATGTAGAAATAAGCATAGC+TGG | + | chr4_3:11213196-11213215 | None:intergenic | 35.0% | |
| ! | TAATTCTTTTTCCCCTTCGT+TGG | - | chr4_3:11213425-11213444 | Msa0629840:intron | 35.0% |
| TTAGCAGTGCATAATGTTGT+TGG | - | chr4_3:11213477-11213496 | Msa0629840:intron | 35.0% | |
| TATAAGAAAGATGAGTGCCT+TGG | + | chr4_3:11213939-11213958 | None:intergenic | 35.0% | |
| TTTCTTATAGAGAAGGCTAG+AGG | - | chr4_3:11213950-11213969 | Msa0629840:intron | 35.0% | |
| AACTTCCACACACAATGATT+TGG | + | chr4_3:11214009-11214028 | None:intergenic | 35.0% | |
| TCTGTGGTTGTACTAATTGA+TGG | - | chr4_3:11214152-11214171 | Msa0629840:intron | 35.0% | |
| CTTTACTTTGTGAGTGCTAT+TGG | - | chr4_3:11214199-11214218 | Msa0629840:intron | 35.0% | |
| TTTAATTGGCATACTTGGAG+AGG | - | chr4_3:11214299-11214318 | Msa0629840:intron | 35.0% | |
| CTCAAAGACATCGATACTAA+AGG | - | chr4_3:11214440-11214459 | Msa0629840:intron | 35.0% | |
| CAACGGTCTGGAAATAAAAA+TGG | + | chr4_3:11214538-11214557 | None:intergenic | 35.0% | |
| TTCTCTATTTGCTCACTTCT+TGG | - | chr4_3:11214716-11214735 | Msa0629840:CDS | 35.0% | |
| ACAAAAACAATGAGGGATGA+GGG | + | chr4_3:11214744-11214763 | None:intergenic | 35.0% | |
| TACAAAAACAATGAGGGATG+AGG | + | chr4_3:11214745-11214764 | None:intergenic | 35.0% | |
| AATATGGACATGGTGAATAG+TGG | - | chr4_3:11214783-11214802 | Msa0629840:intron | 35.0% | |
| ! | GGAGAAAGAAAAATGGCTTT+TGG | + | chr4_3:11214880-11214899 | None:intergenic | 35.0% |
| CTGCTAAGGAGAAAGAAAAA+TGG | + | chr4_3:11214887-11214906 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTTCTCCTTAGC+AGG | - | chr4_3:11214885-11214904 | Msa0629840:intron | 35.0% |
| AATGACAATAGTTCCTGCTA+AGG | + | chr4_3:11214901-11214920 | None:intergenic | 35.0% | |
| TAGCAGGAACTATTGTCATT+TGG | - | chr4_3:11214901-11214920 | Msa0629840:intron | 35.0% | |
| ! | TGGTTTATGCATGTTTGCTA+TGG | - | chr4_3:11214933-11214952 | Msa0629840:intron | 35.0% |
| !! | GGTTTATGCATGTTTGCTAT+GGG | - | chr4_3:11214934-11214953 | Msa0629840:intron | 35.0% |
| CATCTGAGCTTTCATATAAG+GGG | - | chr4_3:11215061-11215080 | Msa0629840:intron | 35.0% | |
| TTGTTGATGTTGTCGAAGTA+TGG | - | chr4_3:11215091-11215110 | Msa0629840:intron | 35.0% | |
| TGTTGTCGAAGTATGGAATA+AGG | - | chr4_3:11215098-11215117 | Msa0629840:intron | 35.0% | |
| TAAGGAGCAGACAAATATGT+TGG | - | chr4_3:11215116-11215135 | Msa0629840:intron | 35.0% | |
| !!! | GGTCACTTTTAAGATTGAGA+AGG | - | chr4_3:11215137-11215156 | Msa0629840:CDS | 35.0% |
| ! | TTTCGTGAGTTCTCTTTTGA+AGG | - | chr4_3:11215191-11215210 | Msa0629840:CDS | 35.0% |
| ACAAAGCTTGAATGTTCTGA+AGG | - | chr4_3:11213085-11213104 | Msa0629840:three_prime_UTR | 35.0% | |
| GCAGACTATAACTAACAAAC+AGG | - | chr4_3:11213148-11213167 | Msa0629840:CDS | 35.0% | |
| GATGTAGAAATAAGCATAGC+TGG | + | chr4_3:11213196-11213215 | None:intergenic | 35.0% | |
| ! | TAATTCTTTTTCCCCTTCGT+TGG | - | chr4_3:11213425-11213444 | Msa0629840:intron | 35.0% |
| TTAGCAGTGCATAATGTTGT+TGG | - | chr4_3:11213477-11213496 | Msa0629840:intron | 35.0% | |
| TATAAGAAAGATGAGTGCCT+TGG | + | chr4_3:11213939-11213958 | None:intergenic | 35.0% | |
| TTTCTTATAGAGAAGGCTAG+AGG | - | chr4_3:11213950-11213969 | Msa0629840:intron | 35.0% | |
| AACTTCCACACACAATGATT+TGG | + | chr4_3:11214009-11214028 | None:intergenic | 35.0% | |
| TCTGTGGTTGTACTAATTGA+TGG | - | chr4_3:11214152-11214171 | Msa0629840:intron | 35.0% | |
| CTTTACTTTGTGAGTGCTAT+TGG | - | chr4_3:11214199-11214218 | Msa0629840:intron | 35.0% | |
| TTTAATTGGCATACTTGGAG+AGG | - | chr4_3:11214299-11214318 | Msa0629840:intron | 35.0% | |
| CTCAAAGACATCGATACTAA+AGG | - | chr4_3:11214440-11214459 | Msa0629840:intron | 35.0% | |
| CAACGGTCTGGAAATAAAAA+TGG | + | chr4_3:11214538-11214557 | None:intergenic | 35.0% | |
| TTCTCTATTTGCTCACTTCT+TGG | - | chr4_3:11214716-11214735 | Msa0629840:CDS | 35.0% | |
| ACAAAAACAATGAGGGATGA+GGG | + | chr4_3:11214744-11214763 | None:intergenic | 35.0% | |
| TACAAAAACAATGAGGGATG+AGG | + | chr4_3:11214745-11214764 | None:intergenic | 35.0% | |
| AATATGGACATGGTGAATAG+TGG | - | chr4_3:11214783-11214802 | Msa0629840:intron | 35.0% | |
| ! | GGAGAAAGAAAAATGGCTTT+TGG | + | chr4_3:11214880-11214899 | None:intergenic | 35.0% |
| CTGCTAAGGAGAAAGAAAAA+TGG | + | chr4_3:11214887-11214906 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTTCTCCTTAGC+AGG | - | chr4_3:11214885-11214904 | Msa0629840:intron | 35.0% |
| AATGACAATAGTTCCTGCTA+AGG | + | chr4_3:11214901-11214920 | None:intergenic | 35.0% | |
| TAGCAGGAACTATTGTCATT+TGG | - | chr4_3:11214901-11214920 | Msa0629840:intron | 35.0% | |
| ! | TGGTTTATGCATGTTTGCTA+TGG | - | chr4_3:11214933-11214952 | Msa0629840:intron | 35.0% |
| !! | GGTTTATGCATGTTTGCTAT+GGG | - | chr4_3:11214934-11214953 | Msa0629840:intron | 35.0% |
| CATCTGAGCTTTCATATAAG+GGG | - | chr4_3:11215061-11215080 | Msa0629840:intron | 35.0% | |
| TTGTTGATGTTGTCGAAGTA+TGG | - | chr4_3:11215091-11215110 | Msa0629840:intron | 35.0% | |
| TGTTGTCGAAGTATGGAATA+AGG | - | chr4_3:11215098-11215117 | Msa0629840:intron | 35.0% | |
| TAAGGAGCAGACAAATATGT+TGG | - | chr4_3:11215116-11215135 | Msa0629840:intron | 35.0% | |
| !!! | GGTCACTTTTAAGATTGAGA+AGG | - | chr4_3:11215137-11215156 | Msa0629840:CDS | 35.0% |
| ! | TTTCGTGAGTTCTCTTTTGA+AGG | - | chr4_3:11215191-11215210 | Msa0629840:CDS | 35.0% |
| !! | AAGCTTGAATGTTCTGAAGG+TGG | - | chr4_3:11213088-11213107 | Msa0629840:three_prime_UTR | 40.0% |
| TATTGCAGTTGAGTGCCTTA+GGG | - | chr4_3:11213620-11213639 | Msa0629840:intron | 40.0% | |
| GCACTTCAACAATATCCCTA+AGG | + | chr4_3:11213638-11213657 | None:intergenic | 40.0% | |
| ACAAAGGTAAGGTCTAGGTT+TGG | - | chr4_3:11213840-11213859 | Msa0629840:intron | 40.0% | |
| ! | GGTGAGTAGCTTGCAATTTA+TGG | - | chr4_3:11214128-11214147 | Msa0629840:intron | 40.0% |
| ! | GCTTGCAATTTATGGTTCTG+TGG | - | chr4_3:11214136-11214155 | Msa0629840:intron | 40.0% |
| ! | GTACTAATTGATGGCCAGTA+TGG | - | chr4_3:11214161-11214180 | Msa0629840:intron | 40.0% |
| !! | AAGCTTGAATGTTCTGAAGG+TGG | - | chr4_3:11213088-11213107 | Msa0629840:three_prime_UTR | 40.0% |
| TATTGCAGTTGAGTGCCTTA+GGG | - | chr4_3:11213620-11213639 | Msa0629840:intron | 40.0% | |
| GCACTTCAACAATATCCCTA+AGG | + | chr4_3:11213638-11213657 | None:intergenic | 40.0% | |
| ACAAAGGTAAGGTCTAGGTT+TGG | - | chr4_3:11213840-11213859 | Msa0629840:intron | 40.0% | |
| ! | GGTGAGTAGCTTGCAATTTA+TGG | - | chr4_3:11214128-11214147 | Msa0629840:intron | 40.0% |
| ! | GCTTGCAATTTATGGTTCTG+TGG | - | chr4_3:11214136-11214155 | Msa0629840:intron | 40.0% |
| ! | GTACTAATTGATGGCCAGTA+TGG | - | chr4_3:11214161-11214180 | Msa0629840:intron | 40.0% |
| CAGAAGAGAAACCAACGAAG+GGG | + | chr4_3:11213439-11213458 | None:intergenic | 45.0% | |
| GCAGAAGAGAAACCAACGAA+GGG | + | chr4_3:11213440-11213459 | None:intergenic | 45.0% | |
| AGCAGAAGAGAAACCAACGA+AGG | + | chr4_3:11213441-11213460 | None:intergenic | 45.0% | |
| CTATTGCAGTTGAGTGCCTT+AGG | - | chr4_3:11213619-11213638 | Msa0629840:intron | 45.0% | |
| TTAGTCCTTCAAGAGAGACG+TGG | - | chr4_3:11213814-11213833 | Msa0629840:intron | 45.0% | |
| ! | CTAATTGATGGCCAGTATGG+TGG | - | chr4_3:11214164-11214183 | Msa0629840:intron | 45.0% |
| ACCTAAAAGCTCCACCATAC+TGG | + | chr4_3:11214178-11214197 | None:intergenic | 45.0% | |
| TTTCCAGACCGTTGCATGTT+AGG | - | chr4_3:11214544-11214563 | Msa0629840:intron | 45.0% | |
| ATTCCTAACATGCAACGGTC+TGG | + | chr4_3:11214550-11214569 | None:intergenic | 45.0% | |
| CAGAAGAGAAACCAACGAAG+GGG | + | chr4_3:11213439-11213458 | None:intergenic | 45.0% | |
| GCAGAAGAGAAACCAACGAA+GGG | + | chr4_3:11213440-11213459 | None:intergenic | 45.0% | |
| AGCAGAAGAGAAACCAACGA+AGG | + | chr4_3:11213441-11213460 | None:intergenic | 45.0% | |
| CTATTGCAGTTGAGTGCCTT+AGG | - | chr4_3:11213619-11213638 | Msa0629840:intron | 45.0% | |
| TTAGTCCTTCAAGAGAGACG+TGG | - | chr4_3:11213814-11213833 | Msa0629840:intron | 45.0% | |
| ! | CTAATTGATGGCCAGTATGG+TGG | - | chr4_3:11214164-11214183 | Msa0629840:intron | 45.0% |
| ACCTAAAAGCTCCACCATAC+TGG | + | chr4_3:11214178-11214197 | None:intergenic | 45.0% | |
| TTTCCAGACCGTTGCATGTT+AGG | - | chr4_3:11214544-11214563 | Msa0629840:intron | 45.0% | |
| ATTCCTAACATGCAACGGTC+TGG | + | chr4_3:11214550-11214569 | None:intergenic | 45.0% | |
| AAGAGAGACGTGGAGCACAA+AGG | - | chr4_3:11213824-11213843 | Msa0629840:intron | 50.0% | |
| AGACGTGGAGCACAAAGGTA+AGG | - | chr4_3:11213829-11213848 | Msa0629840:intron | 50.0% | |
| GGAGCACAAAGGTAAGGTCT+AGG | - | chr4_3:11213835-11213854 | Msa0629840:intron | 50.0% | |
| !! | GCCAGTATGGTGGAGCTTTT+AGG | - | chr4_3:11214174-11214193 | Msa0629840:intron | 50.0% |
| AAGAGAGACGTGGAGCACAA+AGG | - | chr4_3:11213824-11213843 | Msa0629840:intron | 50.0% | |
| AGACGTGGAGCACAAAGGTA+AGG | - | chr4_3:11213829-11213848 | Msa0629840:intron | 50.0% | |
| GGAGCACAAAGGTAAGGTCT+AGG | - | chr4_3:11213835-11213854 | Msa0629840:intron | 50.0% | |
| !! | GCCAGTATGGTGGAGCTTTT+AGG | - | chr4_3:11214174-11214193 | Msa0629840:intron | 50.0% |
| GTGCTCCACGTCTCTCTTGA+AGG | + | chr4_3:11213822-11213841 | None:intergenic | 55.0% | |
| GTGCTCCACGTCTCTCTTGA+AGG | + | chr4_3:11213822-11213841 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 11213068 | 11215226 | 11213068 | ID=Msa0629840;Name=Msa0629840 |
| chr4_3 | mRNA | 11213068 | 11215226 | 11213068 | ID=Msa0629840-mRNA-1;Parent=Msa0629840;Name=Msa0629840-mRNA-1;_AED=0.36;_eAED=0.57;_QI=0|0|0.33|1|0|0|3|62|93 |
| chr4_3 | exon | 11213068 | 11213251 | 11213068 | ID=Msa0629840-mRNA-1:exon:3399;Parent=Msa0629840-mRNA-1 |
| chr4_3 | exon | 11214691 | 11214748 | 11214691 | ID=Msa0629840-mRNA-1:exon:3398;Parent=Msa0629840-mRNA-1 |
| chr4_3 | exon | 11215125 | 11215226 | 11215125 | ID=Msa0629840-mRNA-1:exon:3397;Parent=Msa0629840-mRNA-1 |
| chr4_3 | CDS | 11215125 | 11215226 | 11215125 | ID=Msa0629840-mRNA-1:cds;Parent=Msa0629840-mRNA-1 |
| chr4_3 | CDS | 11214691 | 11214748 | 11214691 | ID=Msa0629840-mRNA-1:cds;Parent=Msa0629840-mRNA-1 |
| chr4_3 | CDS | 11213130 | 11213251 | 11213130 | ID=Msa0629840-mRNA-1:cds;Parent=Msa0629840-mRNA-1 |
| chr4_3 | three_prime_UTR | 11213068 | 11213129 | 11213068 | ID=Msa0629840-mRNA-1:three_prime_utr;Parent=Msa0629840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
