Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0242320 | Msa0269940 | 0.810025 | 1.414743e-50 | -8.615850e-47 |
| Msa0242320 | Msa0629840 | 0.936545 | 1.463126e-97 | -8.615850e-47 |
| Msa0242320 | Msa0719080 | 0.804298 | 2.310725e-49 | -8.615850e-47 |
| Msa0242320 | Msa0719090 | 0.805466 | 1.316746e-49 | -8.615850e-47 |
| Msa0242320 | Msa0719390 | 0.809756 | 1.616378e-50 | -8.615850e-47 |
| Msa0242320 | Msa0789640 | 0.810546 | 1.092515e-50 | -8.615850e-47 |
| Msa0242320 | Msa1163330 | 0.803425 | 3.507914e-49 | -8.615850e-47 |
| Msa0242320 | Msa1305900 | 0.812912 | 3.339683e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGGGCTAAAATTT+TGG | 0.199599 | 2_2:+18423524 | Msa0242320:exon |
| TTCATCTGAGCTTTCATATA+AGG | 0.208720 | 2_2:+18423433 | Msa0242320:CDS |
| AGTCATGCGATGAAAATAAA+AGG | 0.286603 | 2_2:+18421545 | Msa0242320:CDS |
| TCATCTGAGCTTTCATATAA+GGG | 0.338911 | 2_2:+18423434 | Msa0242320:CDS |
| TTGTTGATGTTGTCGAAGTA+TGG | 0.351172 | 2_2:+18423465 | Msa0242320:CDS |
| TGTTGTCGAAGTATGGAATA+AGG | 0.411409 | 2_2:+18423472 | Msa0242320:CDS |
| GCAGACTATAACTAACAAAC+AGG | 0.437590 | 2_2:+18421582 | Msa0242320:CDS |
| GTCATGCGATGAAAATAAAA+GGG | 0.510471 | 2_2:+18421546 | Msa0242320:CDS |
| ACAAAGCTTGAATGTTCTGA+AGG | 0.568373 | 2_2:+18421519 | Msa0242320:CDS |
| CATCTGAGCTTTCATATAAG+GGG | 0.571128 | 2_2:+18423435 | Msa0242320:CDS |
| TAAGGAGCAGACAAATATGT+TGG | 0.571260 | 2_2:+18423490 | Msa0242320:CDS |
| ATGTTTGATTAGGAAGAATG+TGG | 0.592032 | 2_2:+18423405 | Msa0242320:intron |
| AAGCTTGAATGTTCTGAAGG+TGG | 0.608655 | 2_2:+18421522 | Msa0242320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTATTTTGTCATTA+TGG | + | chr2_2:18422648-18422667 | Msa0242320:intron | 15.0% |
| !!! | TTTTTTGTATTTTGTCATTA+TGG | + | chr2_2:18422648-18422667 | Msa0242320:intron | 15.0% |
| !! | AAAATATGTAAATCATGGAA+AGG | - | chr2_2:18421822-18421841 | None:intergenic | 20.0% |
| !! | TAACGAAAATATGTAAATCA+TGG | - | chr2_2:18421827-18421846 | None:intergenic | 20.0% |
| !! | TTAGAATGTAATGAAAATAG+TGG | - | chr2_2:18421948-18421967 | None:intergenic | 20.0% |
| !!! | TACATTCTAATTGTTGTTTT+AGG | + | chr2_2:18421958-18421977 | Msa0242320:intron | 20.0% |
| !!! | TTGTTGTTTTAGGATTTTAA+TGG | + | chr2_2:18421968-18421987 | Msa0242320:intron | 20.0% |
| !! | TTATATAAGACTTCAAGAAA+TGG | - | chr2_2:18422420-18422439 | None:intergenic | 20.0% |
| !!! | ATTTGGACTTCAATTTTATT+TGG | + | chr2_2:18422475-18422494 | Msa0242320:intron | 20.0% |
| !! | TATAGTCAAAAAGTAGAAAT+AGG | - | chr2_2:18422606-18422625 | None:intergenic | 20.0% |
| !!! | TTTGACTATACTTTTTTTCT+TGG | + | chr2_2:18422616-18422635 | Msa0242320:intron | 20.0% |
| !!! | TTGTCATTATGGTTTTTAAT+TGG | + | chr2_2:18422659-18422678 | Msa0242320:intron | 20.0% |
| !! | AATTTCAGAGAAAGAAATTA+TGG | - | chr2_2:18423039-18423058 | None:intergenic | 20.0% |
| !!! | GGATTTTAAACCAATTAATA+TGG | + | chr2_2:18423141-18423160 | Msa0242320:intron | 20.0% |
| !!! | TTATCAATCTTTTCCATTTT+AGG | + | chr2_2:18423366-18423385 | Msa0242320:intron | 20.0% |
| !! | AAAATATGTAAATCATGGAA+AGG | - | chr2_2:18421822-18421841 | None:intergenic | 20.0% |
| !! | TAACGAAAATATGTAAATCA+TGG | - | chr2_2:18421827-18421846 | None:intergenic | 20.0% |
| !! | TTAGAATGTAATGAAAATAG+TGG | - | chr2_2:18421948-18421967 | None:intergenic | 20.0% |
| !!! | TACATTCTAATTGTTGTTTT+AGG | + | chr2_2:18421958-18421977 | Msa0242320:intron | 20.0% |
| !!! | TTGTTGTTTTAGGATTTTAA+TGG | + | chr2_2:18421968-18421987 | Msa0242320:intron | 20.0% |
| !! | TTATATAAGACTTCAAGAAA+TGG | - | chr2_2:18422420-18422439 | None:intergenic | 20.0% |
| !!! | ATTTGGACTTCAATTTTATT+TGG | + | chr2_2:18422475-18422494 | Msa0242320:intron | 20.0% |
| !! | TATAGTCAAAAAGTAGAAAT+AGG | - | chr2_2:18422606-18422625 | None:intergenic | 20.0% |
| !!! | TTTGACTATACTTTTTTTCT+TGG | + | chr2_2:18422616-18422635 | Msa0242320:intron | 20.0% |
| !!! | TTGTCATTATGGTTTTTAAT+TGG | + | chr2_2:18422659-18422678 | Msa0242320:intron | 20.0% |
| !! | AATTTCAGAGAAAGAAATTA+TGG | - | chr2_2:18423039-18423058 | None:intergenic | 20.0% |
| !!! | GGATTTTAAACCAATTAATA+TGG | + | chr2_2:18423141-18423160 | Msa0242320:intron | 20.0% |
| !!! | TTATCAATCTTTTCCATTTT+AGG | + | chr2_2:18423366-18423385 | Msa0242320:intron | 20.0% |
| ! | AATTCTACTACTCTTTAGAT+AGG | + | chr2_2:18421731-18421750 | Msa0242320:intron | 25.0% |
| ! | AATCATGGAAAGGATAATTA+TGG | - | chr2_2:18421812-18421831 | None:intergenic | 25.0% |
| ! | TATCATGATTCAAAAAGGTA+GGG | - | chr2_2:18422305-18422324 | None:intergenic | 25.0% |
| ! | ATATCATGATTCAAAAAGGT+AGG | - | chr2_2:18422306-18422325 | None:intergenic | 25.0% |
| ! | AGTCATATCATGATTCAAAA+AGG | - | chr2_2:18422310-18422329 | None:intergenic | 25.0% |
| !!! | TTGCTATTTTTCAATTTCCA+AGG | + | chr2_2:18422353-18422372 | Msa0242320:intron | 25.0% |
| !! | CTTAGTTTGATTGTGTTATT+TGG | + | chr2_2:18422458-18422477 | Msa0242320:intron | 25.0% |
| !!! | ACTTCAATTTTATTTGGTGA+AGG | + | chr2_2:18422481-18422500 | Msa0242320:intron | 25.0% |
| ! | ACAAGTATAATACTCATTTC+TGG | + | chr2_2:18422730-18422749 | Msa0242320:intron | 25.0% |
| !!! | GTTTGTTAAGCAAATACTTT+TGG | + | chr2_2:18422754-18422773 | Msa0242320:intron | 25.0% |
| !!! | CAAATACTTTTGGTAATTTG+TGG | + | chr2_2:18422764-18422783 | Msa0242320:intron | 25.0% |
| ! | CATTATAAATGAATTGTGGT+AGG | - | chr2_2:18422847-18422866 | None:intergenic | 25.0% |
| ! | GAGTCATTATAAATGAATTG+TGG | - | chr2_2:18422851-18422870 | None:intergenic | 25.0% |
| ! | TAAAAATGGAAAAGGATACA+TGG | - | chr2_2:18422898-18422917 | None:intergenic | 25.0% |
| ! | TCTGGAAATAAAAATGGAAA+AGG | - | chr2_2:18422906-18422925 | None:intergenic | 25.0% |
| ! | TTATTATTCCTAACATGCAA+CGG | - | chr2_2:18422929-18422948 | None:intergenic | 25.0% |
| ! | ATCCTATACAAAAACAATGA+GGG | - | chr2_2:18423125-18423144 | None:intergenic | 25.0% |
| ! | AATCCTATACAAAAACAATG+AGG | - | chr2_2:18423126-18423145 | None:intergenic | 25.0% |
| ! | TAAACCAATTAATATGGACA+TGG | + | chr2_2:18423147-18423166 | Msa0242320:intron | 25.0% |
| !!! | TTCCATTTTAGGACTTTTAT+TGG | + | chr2_2:18423377-18423396 | Msa0242320:intron | 25.0% |
| ! | ATCCAATAAAAGTCCTAAAA+TGG | - | chr2_2:18423382-18423401 | None:intergenic | 25.0% |
| ! | ATTGGATCTTATGTTTGATT+AGG | + | chr2_2:18423395-18423414 | Msa0242320:intron | 25.0% |
| !! | TTTGTTCTTCATCGATTAAT+AGG | - | chr2_2:18421504-18421523 | None:intergenic | 25.0% |
| ! | AATTCTACTACTCTTTAGAT+AGG | + | chr2_2:18421731-18421750 | Msa0242320:intron | 25.0% |
| ! | AATCATGGAAAGGATAATTA+TGG | - | chr2_2:18421812-18421831 | None:intergenic | 25.0% |
| ! | TATCATGATTCAAAAAGGTA+GGG | - | chr2_2:18422305-18422324 | None:intergenic | 25.0% |
| ! | ATATCATGATTCAAAAAGGT+AGG | - | chr2_2:18422306-18422325 | None:intergenic | 25.0% |
| ! | AGTCATATCATGATTCAAAA+AGG | - | chr2_2:18422310-18422329 | None:intergenic | 25.0% |
| !!! | TTGCTATTTTTCAATTTCCA+AGG | + | chr2_2:18422353-18422372 | Msa0242320:intron | 25.0% |
| !! | CTTAGTTTGATTGTGTTATT+TGG | + | chr2_2:18422458-18422477 | Msa0242320:intron | 25.0% |
| !!! | ACTTCAATTTTATTTGGTGA+AGG | + | chr2_2:18422481-18422500 | Msa0242320:intron | 25.0% |
| ! | ACAAGTATAATACTCATTTC+TGG | + | chr2_2:18422730-18422749 | Msa0242320:intron | 25.0% |
| !!! | GTTTGTTAAGCAAATACTTT+TGG | + | chr2_2:18422754-18422773 | Msa0242320:intron | 25.0% |
| !!! | CAAATACTTTTGGTAATTTG+TGG | + | chr2_2:18422764-18422783 | Msa0242320:intron | 25.0% |
| ! | CATTATAAATGAATTGTGGT+AGG | - | chr2_2:18422847-18422866 | None:intergenic | 25.0% |
| ! | GAGTCATTATAAATGAATTG+TGG | - | chr2_2:18422851-18422870 | None:intergenic | 25.0% |
| ! | TAAAAATGGAAAAGGATACA+TGG | - | chr2_2:18422898-18422917 | None:intergenic | 25.0% |
| ! | TCTGGAAATAAAAATGGAAA+AGG | - | chr2_2:18422906-18422925 | None:intergenic | 25.0% |
| ! | TTATTATTCCTAACATGCAA+CGG | - | chr2_2:18422929-18422948 | None:intergenic | 25.0% |
| ! | ATCCTATACAAAAACAATGA+GGG | - | chr2_2:18423125-18423144 | None:intergenic | 25.0% |
| ! | AATCCTATACAAAAACAATG+AGG | - | chr2_2:18423126-18423145 | None:intergenic | 25.0% |
| ! | TAAACCAATTAATATGGACA+TGG | + | chr2_2:18423147-18423166 | Msa0242320:intron | 25.0% |
| !!! | TTCCATTTTAGGACTTTTAT+TGG | + | chr2_2:18423377-18423396 | Msa0242320:intron | 25.0% |
| ! | ATCCAATAAAAGTCCTAAAA+TGG | - | chr2_2:18423382-18423401 | None:intergenic | 25.0% |
| ! | ATTGGATCTTATGTTTGATT+AGG | + | chr2_2:18423395-18423414 | Msa0242320:intron | 25.0% |
| AGTCATGCGATGAAAATAAA+AGG | + | chr2_2:18421545-18421564 | Msa0242320:CDS | 30.0% | |
| GTCATGCGATGAAAATAAAA+GGG | + | chr2_2:18421546-18421565 | Msa0242320:CDS | 30.0% | |
| ATAACAACAAACTGATGCAT+AGG | - | chr2_2:18421784-18421803 | None:intergenic | 30.0% | |
| TTCTGCTGTGAAAATCAATT+TGG | + | chr2_2:18421888-18421907 | Msa0242320:intron | 30.0% | |
| AAGAGGATAAGTAAAGAGTA+TGG | - | chr2_2:18422182-18422201 | None:intergenic | 30.0% | |
| ATAGCAAAAACATAGGTAAG+AGG | - | chr2_2:18422199-18422218 | None:intergenic | 30.0% | |
| !! | TCTTACCTATGTTTTTGCTA+TGG | + | chr2_2:18422198-18422217 | Msa0242320:intron | 30.0% |
| TGTATCCATAGCAAAAACAT+AGG | - | chr2_2:18422206-18422225 | None:intergenic | 30.0% | |
| ACTCATCTTTCTTATAGAGA+AGG | + | chr2_2:18422377-18422396 | Msa0242320:intron | 30.0% | |
| TTTGTGGTTGTACTAATTGA+TGG | + | chr2_2:18422526-18422545 | Msa0242320:intron | 30.0% | |
| !! | TGGTTTTTAATTGGCATACT+TGG | + | chr2_2:18422668-18422687 | Msa0242320:intron | 30.0% |
| !! | CTTTTGGTAATTTGTGGAAT+TGG | + | chr2_2:18422770-18422789 | Msa0242320:intron | 30.0% |
| ATTGGTTGATCACATTCTAA+TGG | + | chr2_2:18422788-18422807 | Msa0242320:intron | 30.0% | |
| CTCAAAGACATTGATACTAA+AGG | + | chr2_2:18422814-18422833 | Msa0242320:intron | 30.0% | |
| AGTCTAAAGACTAATGAGTA+AGG | - | chr2_2:18422996-18423015 | None:intergenic | 30.0% | |
| AGAGAAAGAAATTATGGAAG+TGG | - | chr2_2:18423033-18423052 | None:intergenic | 30.0% | |
| ACAGAGAGTAGAAAAATAAG+TGG | - | chr2_2:18423063-18423082 | None:intergenic | 30.0% | |
| !!! | ATCCCTCATTGTTTTTGTAT+AGG | + | chr2_2:18423120-18423139 | Msa0242320:intron | 30.0% |
| TTCACCATGTCCATATTAAT+TGG | - | chr2_2:18423154-18423173 | None:intergenic | 30.0% | |
| ! | GAGAAAGAAAAATGGCTTTT+GGG | - | chr2_2:18423253-18423272 | None:intergenic | 30.0% |
| ! | TTGTCATTTGGTCAGTTATT+TGG | + | chr2_2:18423287-18423306 | Msa0242320:intron | 30.0% |
| ATGTTTGATTAGGAAGAATG+TGG | + | chr2_2:18423405-18423424 | Msa0242320:intron | 30.0% | |
| TTCATCTGAGCTTTCATATA+AGG | + | chr2_2:18423433-18423452 | Msa0242320:CDS | 30.0% | |
| TCATCTGAGCTTTCATATAA+GGG | + | chr2_2:18423434-18423453 | Msa0242320:CDS | 30.0% | |
| !!! | GTCACTTTTAAGATTGAGAA+GGG | + | chr2_2:18423512-18423531 | Msa0242320:CDS | 30.0% |
| ! | ATTGAGAAGGGCTAAAATTT+TGG | + | chr2_2:18423524-18423543 | Msa0242320:exon | 30.0% |
| !!! | AAGGGCTAAAATTTTGGTTT+TGG | + | chr2_2:18423530-18423549 | Msa0242320:exon | 30.0% |
| AAAAGAGAACTCACGAAAAA+AGG | - | chr2_2:18423563-18423582 | None:intergenic | 30.0% | |
| AGTCATGCGATGAAAATAAA+AGG | + | chr2_2:18421545-18421564 | Msa0242320:CDS | 30.0% | |
| GTCATGCGATGAAAATAAAA+GGG | + | chr2_2:18421546-18421565 | Msa0242320:CDS | 30.0% | |
| ATAACAACAAACTGATGCAT+AGG | - | chr2_2:18421784-18421803 | None:intergenic | 30.0% | |
| TTCTGCTGTGAAAATCAATT+TGG | + | chr2_2:18421888-18421907 | Msa0242320:intron | 30.0% | |
| AAGAGGATAAGTAAAGAGTA+TGG | - | chr2_2:18422182-18422201 | None:intergenic | 30.0% | |
| ATAGCAAAAACATAGGTAAG+AGG | - | chr2_2:18422199-18422218 | None:intergenic | 30.0% | |
| !! | TCTTACCTATGTTTTTGCTA+TGG | + | chr2_2:18422198-18422217 | Msa0242320:intron | 30.0% |
| TGTATCCATAGCAAAAACAT+AGG | - | chr2_2:18422206-18422225 | None:intergenic | 30.0% | |
| ACTCATCTTTCTTATAGAGA+AGG | + | chr2_2:18422377-18422396 | Msa0242320:intron | 30.0% | |
| TTTGTGGTTGTACTAATTGA+TGG | + | chr2_2:18422526-18422545 | Msa0242320:intron | 30.0% | |
| !! | TGGTTTTTAATTGGCATACT+TGG | + | chr2_2:18422668-18422687 | Msa0242320:intron | 30.0% |
| !! | CTTTTGGTAATTTGTGGAAT+TGG | + | chr2_2:18422770-18422789 | Msa0242320:intron | 30.0% |
| ATTGGTTGATCACATTCTAA+TGG | + | chr2_2:18422788-18422807 | Msa0242320:intron | 30.0% | |
| CTCAAAGACATTGATACTAA+AGG | + | chr2_2:18422814-18422833 | Msa0242320:intron | 30.0% | |
| AGTCTAAAGACTAATGAGTA+AGG | - | chr2_2:18422996-18423015 | None:intergenic | 30.0% | |
| AGAGAAAGAAATTATGGAAG+TGG | - | chr2_2:18423033-18423052 | None:intergenic | 30.0% | |
| ACAGAGAGTAGAAAAATAAG+TGG | - | chr2_2:18423063-18423082 | None:intergenic | 30.0% | |
| !!! | ATCCCTCATTGTTTTTGTAT+AGG | + | chr2_2:18423120-18423139 | Msa0242320:intron | 30.0% |
| TTCACCATGTCCATATTAAT+TGG | - | chr2_2:18423154-18423173 | None:intergenic | 30.0% | |
| ! | GAGAAAGAAAAATGGCTTTT+GGG | - | chr2_2:18423253-18423272 | None:intergenic | 30.0% |
| ! | TTGTCATTTGGTCAGTTATT+TGG | + | chr2_2:18423287-18423306 | Msa0242320:intron | 30.0% |
| ATGTTTGATTAGGAAGAATG+TGG | + | chr2_2:18423405-18423424 | Msa0242320:intron | 30.0% | |
| TTCATCTGAGCTTTCATATA+AGG | + | chr2_2:18423433-18423452 | Msa0242320:CDS | 30.0% | |
| TCATCTGAGCTTTCATATAA+GGG | + | chr2_2:18423434-18423453 | Msa0242320:CDS | 30.0% | |
| !!! | GTCACTTTTAAGATTGAGAA+GGG | + | chr2_2:18423512-18423531 | Msa0242320:CDS | 30.0% |
| ! | ATTGAGAAGGGCTAAAATTT+TGG | + | chr2_2:18423524-18423543 | Msa0242320:exon | 30.0% |
| !!! | AAGGGCTAAAATTTTGGTTT+TGG | + | chr2_2:18423530-18423549 | Msa0242320:exon | 30.0% |
| AAAAGAGAACTCACGAAAAA+AGG | - | chr2_2:18423563-18423582 | None:intergenic | 30.0% | |
| ACAAAGCTTGAATGTTCTGA+AGG | + | chr2_2:18421519-18421538 | Msa0242320:CDS | 35.0% | |
| GCAGACTATAACTAACAAAC+AGG | + | chr2_2:18421582-18421601 | Msa0242320:CDS | 35.0% | |
| GATGTAGAAATAAGCATAGC+TGG | - | chr2_2:18421630-18421649 | None:intergenic | 35.0% | |
| ! | TAATTCTTTTTCCCCTTCGT+TGG | + | chr2_2:18421859-18421878 | Msa0242320:intron | 35.0% |
| TTAGCAGTGCATAATGTTGT+TGG | + | chr2_2:18421911-18421930 | Msa0242320:intron | 35.0% | |
| TATAAGAAAGATGAGTGCCT+TGG | - | chr2_2:18422373-18422392 | None:intergenic | 35.0% | |
| TTTCTTATAGAGAAGGCTAG+AGG | + | chr2_2:18422384-18422403 | Msa0242320:intron | 35.0% | |
| CTAAGCAACACACAATGATT+TGG | - | chr2_2:18422443-18422462 | None:intergenic | 35.0% | |
| !! | GCTTGCAATTTATGGTTTTG+TGG | + | chr2_2:18422510-18422529 | Msa0242320:intron | 35.0% |
| CTTTACTTTGTGAGTGCTAT+TGG | + | chr2_2:18422573-18422592 | Msa0242320:intron | 35.0% | |
| TTTAATTGGCATACTTGGAG+AGG | + | chr2_2:18422673-18422692 | Msa0242320:intron | 35.0% | |
| CAACGGTCTGGAAATAAAAA+TGG | - | chr2_2:18422912-18422931 | None:intergenic | 35.0% | |
| TTCTCTATTTGCTCACTTCT+TGG | + | chr2_2:18423090-18423109 | Msa0242320:intron | 35.0% | |
| ACAAAAACAATGAGGGATGA+GGG | - | chr2_2:18423118-18423137 | None:intergenic | 35.0% | |
| TACAAAAACAATGAGGGATG+AGG | - | chr2_2:18423119-18423138 | None:intergenic | 35.0% | |
| AATATGGACATGGTGAATAG+TGG | + | chr2_2:18423157-18423176 | Msa0242320:intron | 35.0% | |
| ! | GGAGAAAGAAAAATGGCTTT+TGG | - | chr2_2:18423254-18423273 | None:intergenic | 35.0% |
| CTGCTAAGGAGAAAGAAAAA+TGG | - | chr2_2:18423261-18423280 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTTCTCCTTAGC+AGG | + | chr2_2:18423259-18423278 | Msa0242320:intron | 35.0% |
| AATGACAATAGTTCCTGCTA+AGG | - | chr2_2:18423275-18423294 | None:intergenic | 35.0% | |
| TAGCAGGAACTATTGTCATT+TGG | + | chr2_2:18423275-18423294 | Msa0242320:intron | 35.0% | |
| ! | TGGTTTATGCATGTTTGCTA+TGG | + | chr2_2:18423307-18423326 | Msa0242320:intron | 35.0% |
| !! | GGTTTATGCATGTTTGCTAT+GGG | + | chr2_2:18423308-18423327 | Msa0242320:intron | 35.0% |
| CATCTGAGCTTTCATATAAG+GGG | + | chr2_2:18423435-18423454 | Msa0242320:CDS | 35.0% | |
| TTGTTGATGTTGTCGAAGTA+TGG | + | chr2_2:18423465-18423484 | Msa0242320:CDS | 35.0% | |
| TGTTGTCGAAGTATGGAATA+AGG | + | chr2_2:18423472-18423491 | Msa0242320:CDS | 35.0% | |
| TAAGGAGCAGACAAATATGT+TGG | + | chr2_2:18423490-18423509 | Msa0242320:CDS | 35.0% | |
| !!! | GGTCACTTTTAAGATTGAGA+AGG | + | chr2_2:18423511-18423530 | Msa0242320:CDS | 35.0% |
| ! | TTTCGTGAGTTCTCTTTTGA+AGG | + | chr2_2:18423565-18423584 | Msa0242320:three_prime_UTR | 35.0% |
| ACAAAGCTTGAATGTTCTGA+AGG | + | chr2_2:18421519-18421538 | Msa0242320:CDS | 35.0% | |
| GCAGACTATAACTAACAAAC+AGG | + | chr2_2:18421582-18421601 | Msa0242320:CDS | 35.0% | |
| GATGTAGAAATAAGCATAGC+TGG | - | chr2_2:18421630-18421649 | None:intergenic | 35.0% | |
| ! | TAATTCTTTTTCCCCTTCGT+TGG | + | chr2_2:18421859-18421878 | Msa0242320:intron | 35.0% |
| TTAGCAGTGCATAATGTTGT+TGG | + | chr2_2:18421911-18421930 | Msa0242320:intron | 35.0% | |
| TATAAGAAAGATGAGTGCCT+TGG | - | chr2_2:18422373-18422392 | None:intergenic | 35.0% | |
| TTTCTTATAGAGAAGGCTAG+AGG | + | chr2_2:18422384-18422403 | Msa0242320:intron | 35.0% | |
| CTAAGCAACACACAATGATT+TGG | - | chr2_2:18422443-18422462 | None:intergenic | 35.0% | |
| !! | GCTTGCAATTTATGGTTTTG+TGG | + | chr2_2:18422510-18422529 | Msa0242320:intron | 35.0% |
| CTTTACTTTGTGAGTGCTAT+TGG | + | chr2_2:18422573-18422592 | Msa0242320:intron | 35.0% | |
| TTTAATTGGCATACTTGGAG+AGG | + | chr2_2:18422673-18422692 | Msa0242320:intron | 35.0% | |
| CAACGGTCTGGAAATAAAAA+TGG | - | chr2_2:18422912-18422931 | None:intergenic | 35.0% | |
| TTCTCTATTTGCTCACTTCT+TGG | + | chr2_2:18423090-18423109 | Msa0242320:intron | 35.0% | |
| ACAAAAACAATGAGGGATGA+GGG | - | chr2_2:18423118-18423137 | None:intergenic | 35.0% | |
| TACAAAAACAATGAGGGATG+AGG | - | chr2_2:18423119-18423138 | None:intergenic | 35.0% | |
| AATATGGACATGGTGAATAG+TGG | + | chr2_2:18423157-18423176 | Msa0242320:intron | 35.0% | |
| ! | GGAGAAAGAAAAATGGCTTT+TGG | - | chr2_2:18423254-18423273 | None:intergenic | 35.0% |
| CTGCTAAGGAGAAAGAAAAA+TGG | - | chr2_2:18423261-18423280 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTTCTCCTTAGC+AGG | + | chr2_2:18423259-18423278 | Msa0242320:intron | 35.0% |
| AATGACAATAGTTCCTGCTA+AGG | - | chr2_2:18423275-18423294 | None:intergenic | 35.0% | |
| TAGCAGGAACTATTGTCATT+TGG | + | chr2_2:18423275-18423294 | Msa0242320:intron | 35.0% | |
| ! | TGGTTTATGCATGTTTGCTA+TGG | + | chr2_2:18423307-18423326 | Msa0242320:intron | 35.0% |
| !! | GGTTTATGCATGTTTGCTAT+GGG | + | chr2_2:18423308-18423327 | Msa0242320:intron | 35.0% |
| CATCTGAGCTTTCATATAAG+GGG | + | chr2_2:18423435-18423454 | Msa0242320:CDS | 35.0% | |
| TTGTTGATGTTGTCGAAGTA+TGG | + | chr2_2:18423465-18423484 | Msa0242320:CDS | 35.0% | |
| TGTTGTCGAAGTATGGAATA+AGG | + | chr2_2:18423472-18423491 | Msa0242320:CDS | 35.0% | |
| TAAGGAGCAGACAAATATGT+TGG | + | chr2_2:18423490-18423509 | Msa0242320:CDS | 35.0% | |
| !!! | GGTCACTTTTAAGATTGAGA+AGG | + | chr2_2:18423511-18423530 | Msa0242320:CDS | 35.0% |
| ! | TTTCGTGAGTTCTCTTTTGA+AGG | + | chr2_2:18423565-18423584 | Msa0242320:three_prime_UTR | 35.0% |
| !! | AAGCTTGAATGTTCTGAAGG+TGG | + | chr2_2:18421522-18421541 | Msa0242320:CDS | 40.0% |
| TATTGCAGTTGAGTGCCTTA+GGG | + | chr2_2:18422054-18422073 | Msa0242320:intron | 40.0% | |
| GCACTTCAACAATATCCCTA+AGG | - | chr2_2:18422072-18422091 | None:intergenic | 40.0% | |
| ACAAAGGTAAGGTCTAGGTT+TGG | + | chr2_2:18422274-18422293 | Msa0242320:intron | 40.0% | |
| ! | GGTGAGTAGCTTGCAATTTA+TGG | + | chr2_2:18422502-18422521 | Msa0242320:intron | 40.0% |
| !! | AAGCTTGAATGTTCTGAAGG+TGG | + | chr2_2:18421522-18421541 | Msa0242320:CDS | 40.0% |
| TATTGCAGTTGAGTGCCTTA+GGG | + | chr2_2:18422054-18422073 | Msa0242320:intron | 40.0% | |
| GCACTTCAACAATATCCCTA+AGG | - | chr2_2:18422072-18422091 | None:intergenic | 40.0% | |
| ACAAAGGTAAGGTCTAGGTT+TGG | + | chr2_2:18422274-18422293 | Msa0242320:intron | 40.0% | |
| ! | GGTGAGTAGCTTGCAATTTA+TGG | + | chr2_2:18422502-18422521 | Msa0242320:intron | 40.0% |
| CAGAAGAGAAACCAACGAAG+GGG | - | chr2_2:18421873-18421892 | None:intergenic | 45.0% | |
| GCAGAAGAGAAACCAACGAA+GGG | - | chr2_2:18421874-18421893 | None:intergenic | 45.0% | |
| AGCAGAAGAGAAACCAACGA+AGG | - | chr2_2:18421875-18421894 | None:intergenic | 45.0% | |
| CTATTGCAGTTGAGTGCCTT+AGG | + | chr2_2:18422053-18422072 | Msa0242320:intron | 45.0% | |
| TTAGTCCTTCAAGAGAGACG+TGG | + | chr2_2:18422248-18422267 | Msa0242320:intron | 45.0% | |
| ! | GGTTGTACTAATTGATGGCC+AGG | + | chr2_2:18422531-18422550 | Msa0242320:intron | 45.0% |
| ! | GTACTAATTGATGGCCAGGA+TGG | + | chr2_2:18422535-18422554 | Msa0242320:intron | 45.0% |
| TTTCCAGACCGTTGCATGTT+AGG | + | chr2_2:18422918-18422937 | Msa0242320:intron | 45.0% | |
| ATTCCTAACATGCAACGGTC+TGG | - | chr2_2:18422924-18422943 | None:intergenic | 45.0% | |
| CAGAAGAGAAACCAACGAAG+GGG | - | chr2_2:18421873-18421892 | None:intergenic | 45.0% | |
| GCAGAAGAGAAACCAACGAA+GGG | - | chr2_2:18421874-18421893 | None:intergenic | 45.0% | |
| AGCAGAAGAGAAACCAACGA+AGG | - | chr2_2:18421875-18421894 | None:intergenic | 45.0% | |
| CTATTGCAGTTGAGTGCCTT+AGG | + | chr2_2:18422053-18422072 | Msa0242320:intron | 45.0% | |
| TTAGTCCTTCAAGAGAGACG+TGG | + | chr2_2:18422248-18422267 | Msa0242320:intron | 45.0% | |
| ! | GGTTGTACTAATTGATGGCC+AGG | + | chr2_2:18422531-18422550 | Msa0242320:intron | 45.0% |
| ! | GTACTAATTGATGGCCAGGA+TGG | + | chr2_2:18422535-18422554 | Msa0242320:intron | 45.0% |
| TTTCCAGACCGTTGCATGTT+AGG | + | chr2_2:18422918-18422937 | Msa0242320:intron | 45.0% | |
| ATTCCTAACATGCAACGGTC+TGG | - | chr2_2:18422924-18422943 | None:intergenic | 45.0% | |
| AAGAGAGACGTGGAGCACAA+AGG | + | chr2_2:18422258-18422277 | Msa0242320:intron | 50.0% | |
| AGACGTGGAGCACAAAGGTA+AGG | + | chr2_2:18422263-18422282 | Msa0242320:intron | 50.0% | |
| GGAGCACAAAGGTAAGGTCT+AGG | + | chr2_2:18422269-18422288 | Msa0242320:intron | 50.0% | |
| ! | CTAATTGATGGCCAGGATGG+TGG | + | chr2_2:18422538-18422557 | Msa0242320:intron | 50.0% |
| ACCTAAAAGCTCCACCATCC+TGG | - | chr2_2:18422552-18422571 | None:intergenic | 50.0% | |
| AAGAGAGACGTGGAGCACAA+AGG | + | chr2_2:18422258-18422277 | Msa0242320:intron | 50.0% | |
| AGACGTGGAGCACAAAGGTA+AGG | + | chr2_2:18422263-18422282 | Msa0242320:intron | 50.0% | |
| GGAGCACAAAGGTAAGGTCT+AGG | + | chr2_2:18422269-18422288 | Msa0242320:intron | 50.0% | |
| ! | CTAATTGATGGCCAGGATGG+TGG | + | chr2_2:18422538-18422557 | Msa0242320:intron | 50.0% |
| ACCTAAAAGCTCCACCATCC+TGG | - | chr2_2:18422552-18422571 | None:intergenic | 50.0% | |
| GTGCTCCACGTCTCTCTTGA+AGG | - | chr2_2:18422256-18422275 | None:intergenic | 55.0% | |
| !!! | GCCAGGATGGTGGAGCTTTT+AGG | + | chr2_2:18422548-18422567 | Msa0242320:intron | 55.0% |
| GTGCTCCACGTCTCTCTTGA+AGG | - | chr2_2:18422256-18422275 | None:intergenic | 55.0% | |
| !!! | GCCAGGATGGTGGAGCTTTT+AGG | + | chr2_2:18422548-18422567 | Msa0242320:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18421502 | 18423600 | 18421502 | ID=Msa0242320;Name=Msa0242320 |
| chr2_2 | mRNA | 18421502 | 18423600 | 18421502 | ID=Msa0242320-mRNA-1;Parent=Msa0242320;Name=Msa0242320-mRNA-1;_AED=0.36;_eAED=0.57;_QI=0|0|0.33|1|0|0|3|62|93 |
| chr2_2 | exon | 18421502 | 18421603 | 18421502 | ID=Msa0242320-mRNA-1:exon:7497;Parent=Msa0242320-mRNA-1 |
| chr2_2 | exon | 18421980 | 18422037 | 18421980 | ID=Msa0242320-mRNA-1:exon:7498;Parent=Msa0242320-mRNA-1 |
| chr2_2 | exon | 18423417 | 18423600 | 18423417 | ID=Msa0242320-mRNA-1:exon:7499;Parent=Msa0242320-mRNA-1 |
| chr2_2 | CDS | 18421502 | 18421603 | 18421502 | ID=Msa0242320-mRNA-1:cds;Parent=Msa0242320-mRNA-1 |
| chr2_2 | CDS | 18421980 | 18422037 | 18421980 | ID=Msa0242320-mRNA-1:cds;Parent=Msa0242320-mRNA-1 |
| chr2_2 | CDS | 18423417 | 18423538 | 18423417 | ID=Msa0242320-mRNA-1:cds;Parent=Msa0242320-mRNA-1 |
| chr2_2 | three_prime_UTR | 18423539 | 18423600 | 18423539 | ID=Msa0242320-mRNA-1:three_prime_utr;Parent=Msa0242320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
