Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0630930 | XP_003604816.1 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0630930 | sp|P29501|TBB2_PEA | 97.763 | 447 | 10 | 0 | 3 | 449 | 1 | 447 | 0.0 | 928 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0630930 | Msa0669170 | 0.811619 | 6.393947e-51 | -8.615850e-47 |
Msa0590630 | Msa0630930 | 0.808042 | 3.760636e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0630930 | MtrunA17_Chr4g0008361 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
Msa0630930 | MtrunA17_Chr4g0008401 | 98.214 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
Msa0630930 | MtrunA17_Chr1g0203181 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 862 |
Msa0630930 | MtrunA17_Chr7g0255791 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
Msa0630930 | MtrunA17_Chr2g0292921 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 846 |
Msa0630930 | MtrunA17_Chr4g0007371 | 95.370 | 432 | 18 | 1 | 1 | 430 | 1 | 432 | 0.0 | 842 |
Msa0630930 | MtrunA17_Chr4g0051631 | 94.651 | 430 | 23 | 0 | 1 | 430 | 1 | 430 | 0.0 | 838 |
Msa0630930 | MtrunA17_Chr3g0142731 | 92.361 | 432 | 31 | 1 | 1 | 430 | 1 | 432 | 0.0 | 823 |
Msa0630930 | MtrunA17_Chr8g0393021 | 89.955 | 448 | 39 | 2 | 1 | 447 | 1 | 443 | 0.0 | 823 |
Msa0630930 | MtrunA17_Chr8g0386781 | 90.930 | 430 | 39 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
Msa0630930 | MtrunA17_Chr8g0378821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 7.67e-125 | 370 |
Msa0630930 | MtrunA17_Chr3g0140821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 7.56e-124 | 367 |
Msa0630930 | MtrunA17_Chr1g0206881 | 41.242 | 451 | 252 | 3 | 1 | 441 | 1 | 448 | 1.71e-123 | 366 |
Msa0630930 | MtrunA17_Chr7g0253411 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 7.96e-123 | 365 |
Msa0630930 | MtrunA17_Chr4g0054511 | 41.324 | 438 | 239 | 3 | 1 | 424 | 1 | 434 | 1.01e-121 | 362 |
Msa0630930 | MtrunA17_Chr6g0461281 | 40.177 | 453 | 255 | 3 | 1 | 442 | 1 | 448 | 9.12e-121 | 359 |
Msa0630930 | MtrunA17_Chr2g0300491 | 36.957 | 460 | 270 | 6 | 1 | 449 | 1 | 451 | 8.01e-99 | 304 |
Msa0630930 | MtrunA17_Chr2g0300671 | 37.413 | 433 | 260 | 3 | 1 | 425 | 1 | 430 | 8.25e-99 | 303 |
Msa0630930 | MtrunA17_Chr7g0275431 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 1.64e-96 | 298 |
Msa0630930 | MtrunA17_Chr3g0109241 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 5.62e-21 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0630930 | AT5G62690.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
Msa0630930 | AT5G62700.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
Msa0630930 | AT5G23860.2 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
Msa0630930 | AT5G23860.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
Msa0630930 | AT5G12250.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
Msa0630930 | AT2G29550.1 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 848 |
Msa0630930 | AT1G75780.1 | 93.735 | 431 | 26 | 1 | 1 | 430 | 1 | 431 | 0.0 | 835 |
Msa0630930 | AT1G20010.1 | 93.271 | 431 | 28 | 1 | 1 | 430 | 1 | 431 | 0.0 | 830 |
Msa0630930 | AT4G20890.1 | 93.256 | 430 | 29 | 0 | 1 | 430 | 1 | 430 | 0.0 | 827 |
Msa0630930 | AT5G44340.1 | 92.791 | 430 | 31 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
Msa0630930 | AT5G19780.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
Msa0630930 | AT5G19770.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
Msa0630930 | AT1G64740.1 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 3.31e-124 | 369 |
Msa0630930 | AT4G14960.2 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.54e-122 | 364 |
Msa0630930 | AT1G50010.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.94e-122 | 362 |
Msa0630930 | AT1G04820.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.94e-122 | 362 |
Msa0630930 | AT4G14960.1 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 5.68e-103 | 313 |
Msa0630930 | AT5G05620.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 7.86e-97 | 299 |
Msa0630930 | AT3G61650.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 1.10e-96 | 299 |
Find 140 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAGAGGGTTTGAAAATT+AGG | 0.099538 | 4_3:+13460718 | None:intergenic |
GGCTGTTATGAAATTGTTTC+TGG | 0.122307 | 4_3:-13458231 | Msa0630930:three_prime_UTR |
ACCAAATCGGAGCAAAATTC+TGG | 0.222809 | 4_3:-13460610 | Msa0630930:CDS |
CGTTCCTCGAGCGATTCTTA+TGG | 0.248775 | 4_3:-13460474 | Msa0630930:CDS |
GTTGTGAAGAAATTGAAATT+AGG | 0.267917 | 4_3:+13460676 | None:intergenic |
ACAGTTGATTTGACATTGTT+TGG | 0.282851 | 4_3:+13458637 | None:intergenic |
TTGAAATTAGGGTTTGAAAA+TGG | 0.296491 | 4_3:+13460688 | None:intergenic |
CGGAAACTCGACTTCAATTC+AGG | 0.306021 | 4_3:-13458569 | Msa0630930:CDS |
AAGAGAGGGTTTGAAAATTA+GGG | 0.307640 | 4_3:+13460719 | None:intergenic |
AGAGTGGTGCTGGGAATAAC+TGG | 0.308905 | 4_3:-13460370 | Msa0630930:CDS |
TTGTGAAGAAATTGAAATTA+GGG | 0.312935 | 4_3:+13460677 | None:intergenic |
GCAGCTTAATTAAGCAACTT+TGG | 0.320395 | 4_3:+13458115 | None:intergenic |
GTTTGGTTGAAATAGAATAA+AGG | 0.323957 | 4_3:+13458045 | None:intergenic |
TTTGGTTGAAATAGAATAAA+GGG | 0.330470 | 4_3:+13458046 | None:intergenic |
CAGCTTAATTAAGCAACTTT+GGG | 0.345575 | 4_3:+13458116 | None:intergenic |
GTGTTTGGTCAGAGTGGTGC+TGG | 0.360890 | 4_3:-13460380 | Msa0630930:CDS |
CACTTCTCATTTCAAAGATC+AGG | 0.366656 | 4_3:-13459342 | Msa0630930:CDS |
TGAGAATTGTGATTGCTTGC+AGG | 0.369709 | 4_3:-13460279 | Msa0630930:CDS |
AGCAGCACACATCATGTTCT+TGG | 0.381073 | 4_3:+13458786 | None:intergenic |
GTGAGGTATCGTCCGTGTCT+AGG | 0.392730 | 4_3:+13458760 | None:intergenic |
CTCCGATTTGGTTACCGCAT+TGG | 0.398686 | 4_3:+13460621 | None:intergenic |
CTAGGTGGAGGAACTGGATC+TGG | 0.402050 | 4_3:-13459373 | Msa0630930:CDS |
CACTGCTATGTTCAGGAGAA+AGG | 0.402943 | 4_3:-13458518 | Msa0630930:CDS |
GATTCTTATGGATCTTGAAC+CGG | 0.408209 | 4_3:-13460462 | Msa0630930:CDS |
GTTTGTGATATTCCACCAAC+AGG | 0.410840 | 4_3:-13458616 | Msa0630930:CDS |
ATTCTGTTCTTGATGTTGTT+AGG | 0.411260 | 4_3:-13460310 | Msa0630930:CDS |
TATCTGCAACTTCCTGTTGC+CGG | 0.413564 | 4_3:-13458290 | Msa0630930:three_prime_UTR |
ACCACAGTGTCGGAAACCTT+TGG | 0.416018 | 4_3:+13459271 | None:intergenic |
AAAGTAAGCATCATCCTGTC+TGG | 0.418443 | 4_3:+13459310 | None:intergenic |
TATAAACTAGCTTACAGCTT+GGG | 0.426537 | 4_3:+13459131 | None:intergenic |
CATTCACTAGGTGGAGGAAC+TGG | 0.427410 | 4_3:-13459379 | Msa0630930:CDS |
AACAGATAAAGTAGCATTGT+AGG | 0.434815 | 4_3:+13459243 | None:intergenic |
GGTTCGTAATCTCTGTTGTA+AGG | 0.435528 | 4_3:-13458269 | Msa0630930:three_prime_UTR |
CACATTTGCTGTGTGAGCTC+TGG | 0.437594 | 4_3:+13458814 | None:intergenic |
TTGATATCAGCTACCATGTC+TGG | 0.442320 | 4_3:-13458991 | Msa0630930:CDS |
CGTGAGATTCTTCACATTCA+AGG | 0.442432 | 4_3:-13460647 | Msa0630930:CDS |
AACAGTTCACTGCTATGTTC+AGG | 0.442593 | 4_3:-13458525 | Msa0630930:CDS |
CAAGAGGTTCTCAGCAGTAC+CGG | 0.448911 | 4_3:-13458849 | Msa0630930:CDS |
AGAGATTACGAACCGGCAAC+AGG | 0.449290 | 4_3:+13458278 | None:intergenic |
CACCTAGTGAATGACATACT+TGG | 0.458399 | 4_3:+13459389 | None:intergenic |
GGTAGGGTCGATTCCGTGCT+CGG | 0.466582 | 4_3:+13460574 | None:intergenic |
CTGGGAATAACTGGGCTAAA+GGG | 0.468422 | 4_3:-13460361 | Msa0630930:CDS |
ACATGTTGTTTGAGGTTCCC+TGG | 0.471364 | 4_3:-13458964 | Msa0630930:CDS |
GGCCAATGCGGTAACCAAAT+CGG | 0.477508 | 4_3:-13460623 | Msa0630930:CDS |
GGAGAAAGGCTTTCTTGCAT+TGG | 0.478824 | 4_3:-13458504 | Msa0630930:CDS |
GGAGGAACTGGATCTGGAAT+GGG | 0.479696 | 4_3:-13459367 | Msa0630930:CDS |
CTGTTTCTGTGTAACAATGT+TGG | 0.480892 | 4_3:-13458199 | Msa0630930:three_prime_UTR |
TGGAGGAACTGGATCTGGAA+TGG | 0.483395 | 4_3:-13459368 | Msa0630930:CDS |
CTGGTGTCACATGTTGTTTG+AGG | 0.483612 | 4_3:-13458972 | Msa0630930:CDS |
GCTGGGAATAACTGGGCTAA+AGG | 0.483743 | 4_3:-13460362 | Msa0630930:CDS |
GTCAAATACTAATGCAGAAG+TGG | 0.487070 | 4_3:-13458082 | Msa0630930:three_prime_UTR |
GGATGAGTATGAAGATGAAG+AGG | 0.487277 | 4_3:-13458377 | Msa0630930:CDS |
AGATCAGAGTTTAGCTGACC+AGG | 0.488565 | 4_3:+13458946 | None:intergenic |
TGAGGTATCGTCCGTGTCTA+GGG | 0.489268 | 4_3:+13458761 | None:intergenic |
GGGTGGTAAGCTTGAGAGTA+CGG | 0.497426 | 4_3:+13459152 | None:intergenic |
TGAGTATGAAGATGAAGAGG+AGG | 0.497865 | 4_3:-13458374 | Msa0630930:CDS |
AAAATGGAAGAGAGAAAGAG+AGG | 0.499500 | 4_3:+13460704 | None:intergenic |
ATCGACCCTACCGGACGTTA+CGG | 0.502581 | 4_3:-13460563 | Msa0630930:CDS |
TCCACCAACAGGGTTGAAGA+TGG | 0.506013 | 4_3:-13458605 | Msa0630930:CDS |
CCAAATCGGAGCAAAATTCT+GGG | 0.506377 | 4_3:-13460609 | Msa0630930:CDS |
GCTTTCTTGCATTGGTACAC+TGG | 0.506815 | 4_3:-13458496 | Msa0630930:CDS |
TGAAAATGCAGATGAATGTA+TGG | 0.507784 | 4_3:-13459209 | Msa0630930:CDS |
TTGCATTGGTACACTGGTGA+AGG | 0.510492 | 4_3:-13458490 | Msa0630930:CDS |
TGACCAAACACAAAATTATC+CGG | 0.511815 | 4_3:+13460392 | None:intergenic |
TGAACTGTTCACTCACCCTT+CGG | 0.513958 | 4_3:+13458539 | None:intergenic |
AAGATGGCTTCTACATTCAT+CGG | 0.521508 | 4_3:-13458589 | Msa0630930:CDS |
CAGAGCTCACACAGCAAATG+TGG | 0.526687 | 4_3:-13458813 | Msa0630930:CDS |
ACGATGGATAGTGTCCGGTC+TGG | 0.529195 | 4_3:-13460437 | Msa0630930:CDS |
GTTCGTAATCTCTGTTGTAA+GGG | 0.531633 | 4_3:-13458268 | Msa0630930:three_prime_UTR |
GCCATCTTCAACCCTGTTGG+TGG | 0.532132 | 4_3:+13458604 | None:intergenic |
AAGAGGTTCTCAGCAGTACC+GGG | 0.534007 | 4_3:-13458848 | Msa0630930:CDS |
ACTCGTCCTACTTTGTCGAA+TGG | 0.535185 | 4_3:-13458663 | Msa0630930:CDS |
GAATCGCTCGAGGAACGAAA+CGG | 0.540981 | 4_3:+13460480 | None:intergenic |
TTTGCACCTTTGACTTCAAG+AGG | 0.541243 | 4_3:-13458865 | Msa0630930:CDS |
TGAAGAGGAGGATTATCAGC+AGG | 0.542245 | 4_3:-13458362 | Msa0630930:CDS |
ACTTCTCATTTCAAAGATCA+GGG | 0.548263 | 4_3:-13459341 | Msa0630930:CDS |
GTGTCGGAAACCTTTGGAGA+AGG | 0.548396 | 4_3:+13459277 | None:intergenic |
ATTCTTATGGATCTTGAACC+GGG | 0.550014 | 4_3:-13460461 | Msa0630930:CDS |
AAATGGAAGAGAGAAAGAGA+GGG | 0.554509 | 4_3:+13460705 | None:intergenic |
AGAAACAATTTCATAACAGC+CGG | 0.560256 | 4_3:+13458233 | None:intergenic |
GAGAATTGTGATTGCTTGCA+GGG | 0.561746 | 4_3:-13460278 | Msa0630930:intron |
TTGGTACACTGGTGAAGGAA+TGG | 0.562019 | 4_3:-13458485 | Msa0630930:CDS |
TGGAATCCATTCGACAAAGT+AGG | 0.564196 | 4_3:+13458657 | None:intergenic |
TGTTTGGTCAGAGTGGTGCT+GGG | 0.566395 | 4_3:-13460379 | Msa0630930:CDS |
TCAGGGAAGAATACCCAGAC+AGG | 0.570015 | 4_3:-13459324 | Msa0630930:CDS |
TGTCGGAAACCTTTGGAGAA+GGG | 0.570735 | 4_3:+13459278 | None:intergenic |
AGAGGTACCACCGTAACGTC+CGG | 0.571590 | 4_3:+13460553 | None:intergenic |
AGTGTCCGGTCTGGACCGTA+CGG | 0.574566 | 4_3:-13460428 | Msa0630930:CDS |
CGGACACTATCCATCGTTCC+CGG | 0.575504 | 4_3:+13460443 | None:intergenic |
TTGGTTGAAATAGAATAAAG+GGG | 0.576122 | 4_3:+13458047 | None:intergenic |
CGGGAACGATGGATAGTGTC+CGG | 0.578391 | 4_3:-13460442 | Msa0630930:CDS |
TACTACAACGAAGCTAGTTG+TGG | 0.580397 | 4_3:-13460503 | Msa0630930:CDS |
GGATCTTGAACCGGGAACGA+TGG | 0.581835 | 4_3:-13460453 | Msa0630930:CDS |
TGAGAACCTCTTGAAGTCAA+AGG | 0.582877 | 4_3:+13458859 | None:intergenic |
AAGTAAGCATCATCCTGTCT+GGG | 0.586190 | 4_3:+13459311 | None:intergenic |
CAATTCAGGAAATGTTCCGA+AGG | 0.586545 | 4_3:-13458555 | Msa0630930:CDS |
TCAAGATGCTACTGCAGAGG+AGG | 0.589411 | 4_3:-13458398 | Msa0630930:CDS |
TTACAACAGAGATTACGAAC+CGG | 0.590375 | 4_3:+13458271 | None:intergenic |
GAAGCCATCTTCAACCCTGT+TGG | 0.595148 | 4_3:+13458601 | None:intergenic |
TCGCTCAAGTTGAAGTTCAG+AGG | 0.597388 | 4_3:+13460535 | None:intergenic |
ACGGAAGCAAATATCATACA+AGG | 0.601543 | 4_3:+13459171 | None:intergenic |
ACAGATAAAGTAGCATTGTA+GGG | 0.601899 | 4_3:+13459244 | None:intergenic |
TGGTGAAGGAATGGATGAGA+TGG | 0.601920 | 4_3:-13458476 | Msa0630930:CDS |
GCTAAAGGGCATTACACTGA+AGG | 0.603983 | 4_3:-13460347 | Msa0630930:CDS |
ATAAACTAGCTTACAGCTTG+GGG | 0.606377 | 4_3:+13459132 | None:intergenic |
TCTGACCGTACGGTCCAGAC+CGG | 0.610666 | 4_3:+13460423 | None:intergenic |
ACTGCATCAGCCATCTTCAG+AGG | 0.610984 | 4_3:-13458739 | Msa0630930:CDS |
CAAGTATGTCATTCACTAGG+TGG | 0.612941 | 4_3:-13459388 | Msa0630930:CDS |
GAGCACGGAATCGACCCTAC+CGG | 0.613065 | 4_3:-13460572 | Msa0630930:CDS |
TTCGTAATCTCTGTTGTAAG+GGG | 0.614198 | 4_3:-13458267 | Msa0630930:three_prime_UTR |
CACATTCAAGGTGGCCAATG+CGG | 0.615773 | 4_3:-13460635 | Msa0630930:CDS |
GAAGTCGTTTGCGCCGAGCA+CGG | 0.617171 | 4_3:-13460587 | Msa0630930:CDS |
AACTAGCTTACAGCTTGGGG+TGG | 0.617330 | 4_3:+13459135 | None:intergenic |
CAACATGAATGATCTTGTGT+CGG | 0.617924 | 4_3:-13458434 | Msa0630930:CDS |
GTATGTCATTCACTAGGTGG+AGG | 0.621491 | 4_3:-13459385 | Msa0630930:CDS |
GAGTGGTGCTGGGAATAACT+GGG | 0.622575 | 4_3:-13460369 | Msa0630930:CDS |
TTCCAAGTATGTCATTCACT+AGG | 0.630377 | 4_3:-13459391 | Msa0630930:CDS |
GTCAGCTAAACTCTGATCTG+AGG | 0.631991 | 4_3:-13458942 | Msa0630930:CDS |
TACCACCGTAACGTCCGGTA+GGG | 0.636328 | 4_3:+13460558 | None:intergenic |
GTACGGTCAGATCTTTAGAC+CGG | 0.637619 | 4_3:-13460411 | Msa0630930:CDS |
ACATGGTAGCTGATATCAAG+TGG | 0.640117 | 4_3:+13458995 | None:intergenic |
AATTCAGGAAATGTTCCGAA+GGG | 0.640149 | 4_3:-13458554 | Msa0630930:CDS |
ATATCAAGATGCTACTGCAG+AGG | 0.642344 | 4_3:-13458401 | Msa0630930:CDS |
GTACCACCGTAACGTCCGGT+AGG | 0.644006 | 4_3:+13460557 | None:intergenic |
TCCAAAGGTTTCCGACACTG+TGG | 0.648616 | 4_3:-13459272 | Msa0630930:CDS |
TGGTTGAAATAGAATAAAGG+GGG | 0.650222 | 4_3:+13458048 | None:intergenic |
TGAGATGGAGTTCACTGAGG+CGG | 0.651559 | 4_3:-13458461 | Msa0630930:CDS |
GGTCTAAAGATCTGACCGTA+CGG | 0.651719 | 4_3:+13460413 | None:intergenic |
GATCAGAGTTTAGCTGACCA+GGG | 0.652134 | 4_3:+13458947 | None:intergenic |
GCTCTGGTACACTCAAAGCC+CGG | 0.656554 | 4_3:+13458830 | None:intergenic |
GTAGGGTTCAACCACAGTGT+CGG | 0.658333 | 4_3:+13459261 | None:intergenic |
TTTGTGATATTCCACCAACA+GGG | 0.665479 | 4_3:-13458615 | Msa0630930:CDS |
GACCCTACCGGACGTTACGG+TGG | 0.670261 | 4_3:-13460560 | Msa0630930:CDS |
AGAGCTCACACAGCAAATGT+GGG | 0.671631 | 4_3:-13458812 | Msa0630930:CDS |
ACAACATGTGACACCAGACA+TGG | 0.683355 | 4_3:+13458978 | None:intergenic |
GAGATTCTTCACATTCAAGG+TGG | 0.707839 | 4_3:-13460644 | Msa0630930:CDS |
TGTGCTGCTGACCCTAGACA+CGG | 0.727199 | 4_3:-13458772 | Msa0630930:CDS |
AGATCCATAAGAATCGCTCG+AGG | 0.734475 | 4_3:+13460470 | None:intergenic |
TGAAGATGGCTGATGCAGTG+AGG | 0.739156 | 4_3:+13458743 | None:intergenic |
GGATGAGATGGAGTTCACTG+AGG | 0.753115 | 4_3:-13458464 | Msa0630930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTTTTTTTTTACTTGTTTT+TGG | - | chr4_3:13458528-13458547 | Msa0630930:CDS | 15.0% |
!! | TTGTGAAGAAATTGAAATTA+GGG | + | chr4_3:13458096-13458115 | None:intergenic | 20.0% |
!!! | TTTACTTGTTTTTGGAATTT+AGG | - | chr4_3:13458536-13458555 | Msa0630930:CDS | 20.0% |
!!! | TTACTTGTTTTTGGAATTTA+GGG | - | chr4_3:13458537-13458556 | Msa0630930:CDS | 20.0% |
!!! | AAATTATTGAAGTGTTTGAT+TGG | - | chr4_3:13458621-13458640 | Msa0630930:CDS | 20.0% |
!!! | TCATTTTCTGAAATTATCAT+CGG | + | chr4_3:13458843-13458862 | None:intergenic | 20.0% |
!!! | TCTTTGTGTTAATTTTGATA+TGG | - | chr4_3:13458972-13458991 | Msa0630930:CDS | 20.0% |
!!! | TTTGAGTTTACTATATGATA+TGG | - | chr4_3:13459265-13459284 | Msa0630930:CDS | 20.0% |
!! | TTGAGTTTACTATATGATAT+GGG | - | chr4_3:13459266-13459285 | Msa0630930:CDS | 20.0% |
!! | AACAAACTTGAAAACATATA+TGG | + | chr4_3:13459691-13459710 | None:intergenic | 20.0% |
!! | TTTGGTTGAAATAGAATAAA+GGG | + | chr4_3:13460727-13460746 | None:intergenic | 20.0% |
!!! | CAATAGATTTTAGTTTTGTT+TGG | + | chr4_3:13460745-13460764 | None:intergenic | 20.0% |
! | TTGAAATTAGGGTTTGAAAA+TGG | + | chr4_3:13458085-13458104 | None:intergenic | 25.0% |
! | GTTGTGAAGAAATTGAAATT+AGG | + | chr4_3:13458097-13458116 | None:intergenic | 25.0% |
!!! | TTGGTTTTTACAGAATTTTG+TGG | - | chr4_3:13458640-13458659 | Msa0630930:CDS | 25.0% |
!! | TGGTTTTTACAGAATTTTGT+GGG | - | chr4_3:13458641-13458660 | Msa0630930:CDS | 25.0% |
!!! | GTATGTGTTAATTTTGCTAT+AGG | - | chr4_3:13458678-13458697 | Msa0630930:CDS | 25.0% |
! | TTAATGAAATGAAGTCTACA+TGG | - | chr4_3:13458766-13458785 | Msa0630930:CDS | 25.0% |
! | ATTCAATGTATCATATGTGT+TGG | - | chr4_3:13458867-13458886 | Msa0630930:CDS | 25.0% |
!!! | TAGTTTATAGAGTGTTTTGT+GGG | - | chr4_3:13458936-13458955 | Msa0630930:CDS | 25.0% |
!! | TTTTGCATCTGATTTTGAAT+TGG | - | chr4_3:13459117-13459136 | Msa0630930:intron | 25.0% |
!! | TTTGCATCTGATTTTGAATT+GGG | - | chr4_3:13459118-13459137 | Msa0630930:intron | 25.0% |
!! | ATGTTGCTGTTAAGTTAATT+GGG | - | chr4_3:13459188-13459207 | Msa0630930:CDS | 25.0% |
!!! | TGGGTATTTTTTTATGTAAG+AGG | - | chr4_3:13459285-13459304 | Msa0630930:CDS | 25.0% |
!!! | GGGTATTTTTTTATGTAAGA+GGG | - | chr4_3:13459286-13459305 | Msa0630930:CDS | 25.0% |
!!! | TTTTATTCTTTTGTTTGTGC+AGG | - | chr4_3:13459355-13459374 | Msa0630930:CDS | 25.0% |
! | AAAGAAAGTGATTAGAAATG+AGG | + | chr4_3:13459665-13459684 | None:intergenic | 25.0% |
!! | GTTTGTTACATTTGTTCAAA+AGG | - | chr4_3:13459704-13459723 | Msa0630930:intron | 25.0% |
!! | GTTCAAAAGGTTTCTAATTT+TGG | - | chr4_3:13459717-13459736 | Msa0630930:intron | 25.0% |
! | TTGGTTGAAATAGAATAAAG+GGG | + | chr4_3:13460726-13460745 | None:intergenic | 25.0% |
! | GTTTGGTTGAAATAGAATAA+AGG | + | chr4_3:13460728-13460747 | None:intergenic | 25.0% |
AAGAGAGGGTTTGAAAATTA+GGG | + | chr4_3:13458054-13458073 | None:intergenic | 30.0% | |
AAAGAGAGGGTTTGAAAATT+AGG | + | chr4_3:13458055-13458074 | None:intergenic | 30.0% | |
TGACCAAACACAAAATTATC+CGG | + | chr4_3:13458381-13458400 | None:intergenic | 30.0% | |
ATTCTGTTCTTGATGTTGTT+AGG | - | chr4_3:13458460-13458479 | Msa0630930:CDS | 30.0% | |
!!! | TGTTGATTTTGAAGTGTTTG+TGG | - | chr4_3:13458563-13458582 | Msa0630930:CDS | 30.0% |
!!! | TTTTGTGGGTTAATTTGTGA+TGG | - | chr4_3:13458655-13458674 | Msa0630930:CDS | 30.0% |
!! | TTTGTGGGTTAATTTGTGAT+GGG | - | chr4_3:13458656-13458675 | Msa0630930:CDS | 30.0% |
!! | TGTGTTAATTTTGCTATAGG+TGG | - | chr4_3:13458681-13458700 | Msa0630930:CDS | 30.0% |
!! | GTGTTAATTTTGCTATAGGT+GGG | - | chr4_3:13458682-13458701 | Msa0630930:CDS | 30.0% |
!! | GTAGTTTATAGAGTGTTTTG+TGG | - | chr4_3:13458935-13458954 | Msa0630930:CDS | 30.0% |
!! | GTGTTAATTTTGATATGGAG+TGG | - | chr4_3:13458977-13458996 | Msa0630930:CDS | 30.0% |
! | CATGTTGCTGTTAAGTTAAT+TGG | - | chr4_3:13459187-13459206 | Msa0630930:CDS | 30.0% |
!! | TTATGAGGCTGATTTTGAAA+TGG | - | chr4_3:13459322-13459341 | Msa0630930:CDS | 30.0% |
!!! | TATGAGGCTGATTTTGAAAT+GGG | - | chr4_3:13459323-13459342 | Msa0630930:CDS | 30.0% |
ACTTCTCATTTCAAAGATCA+GGG | - | chr4_3:13459429-13459448 | Msa0630930:intron | 30.0% | |
ACAGATAAAGTAGCATTGTA+GGG | + | chr4_3:13459529-13459548 | None:intergenic | 30.0% | |
AACAGATAAAGTAGCATTGT+AGG | + | chr4_3:13459530-13459549 | None:intergenic | 30.0% | |
TGAAAATGCAGATGAATGTA+TGG | - | chr4_3:13459561-13459580 | Msa0630930:intron | 30.0% | |
! | TATAAACTAGCTTACAGCTT+GGG | + | chr4_3:13459642-13459661 | None:intergenic | 30.0% |
!! | ACAGTTGATTTGACATTGTT+TGG | + | chr4_3:13460136-13460155 | None:intergenic | 30.0% |
AGAAACAATTTCATAACAGC+CGG | + | chr4_3:13460540-13460559 | None:intergenic | 30.0% | |
CAGCTTAATTAAGCAACTTT+GGG | + | chr4_3:13460657-13460676 | None:intergenic | 30.0% | |
TGGTTGAAATAGAATAAAGG+GGG | + | chr4_3:13460725-13460744 | None:intergenic | 30.0% | |
AAATGGAAGAGAGAAAGAGA+GGG | + | chr4_3:13458068-13458087 | None:intergenic | 35.0% | |
AAAATGGAAGAGAGAAAGAG+AGG | + | chr4_3:13458069-13458088 | None:intergenic | 35.0% | |
GATTCTTATGGATCTTGAAC+CGG | - | chr4_3:13458308-13458327 | Msa0630930:three_prime_UTR | 35.0% | |
ATTCTTATGGATCTTGAACC+GGG | - | chr4_3:13458309-13458328 | Msa0630930:three_prime_UTR | 35.0% | |
! | AGACCGGATAATTTTGTGTT+TGG | - | chr4_3:13458375-13458394 | Msa0630930:CDS | 35.0% |
! | AATTTTGTGTTTGGTCAGAG+TGG | - | chr4_3:13458384-13458403 | Msa0630930:CDS | 35.0% |
!! | GGGTTATTTTGCATGATTTG+TGG | - | chr4_3:13458702-13458721 | Msa0630930:CDS | 35.0% |
!! | TTCTGAAATTATCATCGGTG+TGG | + | chr4_3:13458838-13458857 | None:intergenic | 35.0% |
!! | TTTATAGAGTGTTTTGTGGG+TGG | - | chr4_3:13458939-13458958 | Msa0630930:CDS | 35.0% |
AACTTAACAGCAACATGACA+TGG | + | chr4_3:13459184-13459203 | None:intergenic | 35.0% | |
GGTGTACTTTGATTGTTATG+AGG | - | chr4_3:13459307-13459326 | Msa0630930:CDS | 35.0% | |
TTCCAAGTATGTCATTCACT+AGG | - | chr4_3:13459379-13459398 | Msa0630930:CDS | 35.0% | |
CACTTCTCATTTCAAAGATC+AGG | - | chr4_3:13459428-13459447 | Msa0630930:intron | 35.0% | |
ACGGAAGCAAATATCATACA+AGG | + | chr4_3:13459602-13459621 | None:intergenic | 35.0% | |
! | ATAAACTAGCTTACAGCTTG+GGG | + | chr4_3:13459641-13459660 | None:intergenic | 35.0% |
! | GTATAAACTAGCTTACAGCT+TGG | + | chr4_3:13459643-13459662 | None:intergenic | 35.0% |
!!! | TTGCTTTTTTGTGATGCAGT+TGG | - | chr4_3:13459743-13459762 | Msa0630930:intron | 35.0% |
AACCCAACATGAAAAAGTGA+AGG | + | chr4_3:13459886-13459905 | None:intergenic | 35.0% | |
TTTGTGATATTCCACCAACA+GGG | - | chr4_3:13460155-13460174 | Msa0630930:intron | 35.0% | |
AAGATGGCTTCTACATTCAT+CGG | - | chr4_3:13460181-13460200 | Msa0630930:intron | 35.0% | |
AATTCAGGAAATGTTCCGAA+GGG | - | chr4_3:13460216-13460235 | Msa0630930:intron | 35.0% | |
CAACATGAATGATCTTGTGT+CGG | - | chr4_3:13460336-13460355 | Msa0630930:CDS | 35.0% | |
! | TATGTTGATGCTTTTCGCAA+TGG | - | chr4_3:13460449-13460468 | Msa0630930:CDS | 35.0% |
TTACAACAGAGATTACGAAC+CGG | + | chr4_3:13460502-13460521 | None:intergenic | 35.0% | |
GTTCGTAATCTCTGTTGTAA+GGG | - | chr4_3:13460502-13460521 | Msa0630930:CDS | 35.0% | |
TTCGTAATCTCTGTTGTAAG+GGG | - | chr4_3:13460503-13460522 | Msa0630930:CDS | 35.0% | |
GGCTGTTATGAAATTGTTTC+TGG | - | chr4_3:13460539-13460558 | Msa0630930:CDS | 35.0% | |
!! | CTGTTTCTGTGTAACAATGT+TGG | - | chr4_3:13460571-13460590 | Msa0630930:CDS | 35.0% |
GCAGCTTAATTAAGCAACTT+TGG | + | chr4_3:13460658-13460677 | None:intergenic | 35.0% | |
GTCAAATACTAATGCAGAAG+TGG | - | chr4_3:13460688-13460707 | Msa0630930:five_prime_UTR | 35.0% | |
CGTGAGATTCTTCACATTCA+AGG | - | chr4_3:13458123-13458142 | Msa0630930:three_prime_UTR | 40.0% | |
GAGATTCTTCACATTCAAGG+TGG | - | chr4_3:13458126-13458145 | Msa0630930:three_prime_UTR | 40.0% | |
ACCAAATCGGAGCAAAATTC+TGG | - | chr4_3:13458160-13458179 | Msa0630930:three_prime_UTR | 40.0% | |
CCAAATCGGAGCAAAATTCT+GGG | - | chr4_3:13458161-13458180 | Msa0630930:three_prime_UTR | 40.0% | |
TACTACAACGAAGCTAGTTG+TGG | - | chr4_3:13458267-13458286 | Msa0630930:three_prime_UTR | 40.0% | |
TGAGAATTGTGATTGCTTGC+AGG | - | chr4_3:13458491-13458510 | Msa0630930:CDS | 40.0% | |
GAGAATTGTGATTGCTTGCA+GGG | - | chr4_3:13458492-13458511 | Msa0630930:CDS | 40.0% | |
TGACTATGAAGCACGAACAT+TGG | - | chr4_3:13458795-13458814 | Msa0630930:CDS | 40.0% | |
! | TGGATCTTTTGCCTGTTTTG+TGG | - | chr4_3:13458997-13459016 | Msa0630930:CDS | 40.0% |
!! | TTGCATGTGAGCTTTTTCTC+AGG | - | chr4_3:13459144-13459163 | Msa0630930:intron | 40.0% |
CACCTAGTGAATGACATACT+TGG | + | chr4_3:13459384-13459403 | None:intergenic | 40.0% | |
CAAGTATGTCATTCACTAGG+TGG | - | chr4_3:13459382-13459401 | Msa0630930:CDS | 40.0% | |
AAGTAAGCATCATCCTGTCT+GGG | + | chr4_3:13459462-13459481 | None:intergenic | 40.0% | |
AAAGTAAGCATCATCCTGTC+TGG | + | chr4_3:13459463-13459482 | None:intergenic | 40.0% | |
! | CATCTGCATTTTCAACAAGC+TGG | + | chr4_3:13459555-13459574 | None:intergenic | 40.0% |
ACATGGTAGCTGATATCAAG+TGG | + | chr4_3:13459778-13459797 | None:intergenic | 40.0% | |
TTGATATCAGCTACCATGTC+TGG | - | chr4_3:13459779-13459798 | Msa0630930:intron | 40.0% | |
ACATGAAAAAGTGAAGGCGA+GGG | + | chr4_3:13459880-13459899 | None:intergenic | 40.0% | |
AACATGAAAAAGTGAAGGCG+AGG | + | chr4_3:13459881-13459900 | None:intergenic | 40.0% | |
!!! | TCGCCTTCACTTTTTCATGT+TGG | - | chr4_3:13459880-13459899 | Msa0630930:intron | 40.0% |
!!! | CGCCTTCACTTTTTCATGTT+GGG | - | chr4_3:13459881-13459900 | Msa0630930:intron | 40.0% |
! | TTTGCACCTTTGACTTCAAG+AGG | - | chr4_3:13459905-13459924 | Msa0630930:intron | 40.0% |
TGAGAACCTCTTGAAGTCAA+AGG | + | chr4_3:13459914-13459933 | None:intergenic | 40.0% | |
TGGAATCCATTCGACAAAGT+AGG | + | chr4_3:13460116-13460135 | None:intergenic | 40.0% | |
GTTTGTGATATTCCACCAAC+AGG | - | chr4_3:13460154-13460173 | Msa0630930:intron | 40.0% | |
CAATTCAGGAAATGTTCCGA+AGG | - | chr4_3:13460215-13460234 | Msa0630930:intron | 40.0% | |
AACAGTTCACTGCTATGTTC+AGG | - | chr4_3:13460245-13460264 | Msa0630930:intron | 40.0% | |
ATATCAAGATGCTACTGCAG+AGG | - | chr4_3:13460369-13460388 | Msa0630930:CDS | 40.0% | |
GGATGAGTATGAAGATGAAG+AGG | - | chr4_3:13460393-13460412 | Msa0630930:CDS | 40.0% | |
TGAGTATGAAGATGAAGAGG+AGG | - | chr4_3:13460396-13460415 | Msa0630930:CDS | 40.0% | |
GGTTCGTAATCTCTGTTGTA+AGG | - | chr4_3:13460501-13460520 | Msa0630930:CDS | 40.0% | |
! | GTAAGGGGATACTTTTGTTC+CGG | - | chr4_3:13460518-13460537 | Msa0630930:CDS | 40.0% |
TGAAATAGAATAAAGGGGGC+AGG | + | chr4_3:13460721-13460740 | None:intergenic | 40.0% | |
! | CCCAGAATTTTGCTCCGATT+TGG | + | chr4_3:13458164-13458183 | None:intergenic | 45.0% |
!! | TCGCTCAAGTTGAAGTTCAG+AGG | + | chr4_3:13458238-13458257 | None:intergenic | 45.0% |
AGATCCATAAGAATCGCTCG+AGG | + | chr4_3:13458303-13458322 | None:intergenic | 45.0% | |
GGTCTAAAGATCTGACCGTA+CGG | + | chr4_3:13458360-13458379 | None:intergenic | 45.0% | |
GTACGGTCAGATCTTTAGAC+CGG | - | chr4_3:13458359-13458378 | Msa0630930:CDS | 45.0% | |
CTGGGAATAACTGGGCTAAA+GGG | - | chr4_3:13458409-13458428 | Msa0630930:CDS | 45.0% | |
!! | GCTAAAGGGCATTACACTGA+AGG | - | chr4_3:13458423-13458442 | Msa0630930:CDS | 45.0% |
! | TTCCTCGGATTAGGCATGTA+CGG | + | chr4_3:13458903-13458922 | None:intergenic | 45.0% |
TACGAAGCGCAAACATTCCT+CGG | + | chr4_3:13458918-13458937 | None:intergenic | 45.0% | |
TGCACAATCAGCCACAAAAC+AGG | + | chr4_3:13459011-13459030 | None:intergenic | 45.0% | |
GTATGTCATTCACTAGGTGG+AGG | - | chr4_3:13459385-13459404 | Msa0630930:CDS | 45.0% | |
! | CTCTGTTTTCCCTTCTCCAA+AGG | - | chr4_3:13459483-13459502 | Msa0630930:intron | 45.0% |
! | TGTCGGAAACCTTTGGAGAA+GGG | + | chr4_3:13459495-13459514 | None:intergenic | 45.0% |
ACAACATGTGACACCAGACA+TGG | + | chr4_3:13459795-13459814 | None:intergenic | 45.0% | |
!! | CTGGTGTCACATGTTGTTTG+AGG | - | chr4_3:13459798-13459817 | Msa0630930:intron | 45.0% |
! | ACATGTTGTTTGAGGTTCCC+TGG | - | chr4_3:13459806-13459825 | Msa0630930:intron | 45.0% |
GATCAGAGTTTAGCTGACCA+GGG | + | chr4_3:13459826-13459845 | None:intergenic | 45.0% | |
AGATCAGAGTTTAGCTGACC+AGG | + | chr4_3:13459827-13459846 | None:intergenic | 45.0% | |
GTCAGCTAAACTCTGATCTG+AGG | - | chr4_3:13459828-13459847 | Msa0630930:intron | 45.0% | |
AAAAAGTGAAGGCGAGGGAA+TGG | + | chr4_3:13459875-13459894 | None:intergenic | 45.0% | |
AGAGCTCACACAGCAAATGT+GGG | - | chr4_3:13459958-13459977 | Msa0630930:intron | 45.0% | |
AGCAGCACACATCATGTTCT+TGG | + | chr4_3:13459987-13460006 | None:intergenic | 45.0% | |
!! | GCTCATTTTGCCTCTGAAGA+TGG | + | chr4_3:13460044-13460063 | None:intergenic | 45.0% |
ACTCGTCCTACTTTGTCGAA+TGG | - | chr4_3:13460107-13460126 | Msa0630930:intron | 45.0% | |
CGGAAACTCGACTTCAATTC+AGG | - | chr4_3:13460201-13460220 | Msa0630930:intron | 45.0% | |
TGAACTGTTCACTCACCCTT+CGG | + | chr4_3:13460234-13460253 | None:intergenic | 45.0% | |
CACTGCTATGTTCAGGAGAA+AGG | - | chr4_3:13460252-13460271 | Msa0630930:intron | 45.0% | |
GGAGAAAGGCTTTCTTGCAT+TGG | - | chr4_3:13460266-13460285 | Msa0630930:intron | 45.0% | |
! | GCTTTCTTGCATTGGTACAC+TGG | - | chr4_3:13460274-13460293 | Msa0630930:intron | 45.0% |
! | TTGCATTGGTACACTGGTGA+AGG | - | chr4_3:13460280-13460299 | Msa0630930:CDS | 45.0% |
TTGGTACACTGGTGAAGGAA+TGG | - | chr4_3:13460285-13460304 | Msa0630930:CDS | 45.0% | |
TGGTGAAGGAATGGATGAGA+TGG | - | chr4_3:13460294-13460313 | Msa0630930:CDS | 45.0% | |
TGAAGAGGAGGATTATCAGC+AGG | - | chr4_3:13460408-13460427 | Msa0630930:CDS | 45.0% | |
TATCTGCAACTTCCTGTTGC+CGG | - | chr4_3:13460480-13460499 | Msa0630930:CDS | 45.0% | |
CACATTCAAGGTGGCCAATG+CGG | - | chr4_3:13458135-13458154 | Msa0630930:three_prime_UTR | 50.0% | |
GGCCAATGCGGTAACCAAAT+CGG | - | chr4_3:13458147-13458166 | Msa0630930:three_prime_UTR | 50.0% | |
!! | CTCCGATTTGGTTACCGCAT+TGG | + | chr4_3:13458152-13458171 | None:intergenic | 50.0% |
GAATCGCTCGAGGAACGAAA+CGG | + | chr4_3:13458293-13458312 | None:intergenic | 50.0% | |
CGTTCCTCGAGCGATTCTTA+TGG | - | chr4_3:13458296-13458315 | Msa0630930:three_prime_UTR | 50.0% | |
TGTTTGGTCAGAGTGGTGCT+GGG | - | chr4_3:13458391-13458410 | Msa0630930:CDS | 50.0% | |
! | AGAGTGGTGCTGGGAATAAC+TGG | - | chr4_3:13458400-13458419 | Msa0630930:CDS | 50.0% |
! | GAGTGGTGCTGGGAATAACT+GGG | - | chr4_3:13458401-13458420 | Msa0630930:CDS | 50.0% |
GCTGGGAATAACTGGGCTAA+AGG | - | chr4_3:13458408-13458427 | Msa0630930:CDS | 50.0% | |
CATTGGACACTGACACGACA+CGG | - | chr4_3:13458812-13458831 | Msa0630930:CDS | 50.0% | |
! | TCCTCGGATTAGGCATGTAC+GGG | + | chr4_3:13458902-13458921 | None:intergenic | 50.0% |
GCGCAAACATTCCTCGGATT+AGG | + | chr4_3:13458912-13458931 | None:intergenic | 50.0% | |
CATTCACTAGGTGGAGGAAC+TGG | - | chr4_3:13459391-13459410 | Msa0630930:CDS | 50.0% | |
TGGAGGAACTGGATCTGGAA+TGG | - | chr4_3:13459402-13459421 | Msa0630930:intron | 50.0% | |
! | GGAGGAACTGGATCTGGAAT+GGG | - | chr4_3:13459403-13459422 | Msa0630930:intron | 50.0% |
TCAGGGAAGAATACCCAGAC+AGG | - | chr4_3:13459446-13459465 | Msa0630930:intron | 50.0% | |
! | GTGTCGGAAACCTTTGGAGA+AGG | + | chr4_3:13459496-13459515 | None:intergenic | 50.0% |
TCCAAAGGTTTCCGACACTG+TGG | - | chr4_3:13459498-13459517 | Msa0630930:intron | 50.0% | |
! | ACCACAGTGTCGGAAACCTT+TGG | + | chr4_3:13459502-13459521 | None:intergenic | 50.0% |
GTAGGGTTCAACCACAGTGT+CGG | + | chr4_3:13459512-13459531 | None:intergenic | 50.0% | |
GGGTGGTAAGCTTGAGAGTA+CGG | + | chr4_3:13459621-13459640 | None:intergenic | 50.0% | |
! | AACTAGCTTACAGCTTGGGG+TGG | + | chr4_3:13459638-13459657 | None:intergenic | 50.0% |
CAAGAGGTTCTCAGCAGTAC+CGG | - | chr4_3:13459921-13459940 | Msa0630930:intron | 50.0% | |
AAGAGGTTCTCAGCAGTACC+GGG | - | chr4_3:13459922-13459941 | Msa0630930:intron | 50.0% | |
!! | CACATTTGCTGTGTGAGCTC+TGG | + | chr4_3:13459959-13459978 | None:intergenic | 50.0% |
CAGAGCTCACACAGCAAATG+TGG | - | chr4_3:13459957-13459976 | Msa0630930:intron | 50.0% | |
!! | TGAGGTATCGTCCGTGTCTA+GGG | + | chr4_3:13460012-13460031 | None:intergenic | 50.0% |
TGAAGATGGCTGATGCAGTG+AGG | + | chr4_3:13460030-13460049 | None:intergenic | 50.0% | |
ACTGCATCAGCCATCTTCAG+AGG | - | chr4_3:13460031-13460050 | Msa0630930:intron | 50.0% | |
TCCACCAACAGGGTTGAAGA+TGG | - | chr4_3:13460165-13460184 | Msa0630930:intron | 50.0% | |
GAAGCCATCTTCAACCCTGT+TGG | + | chr4_3:13460172-13460191 | None:intergenic | 50.0% | |
GGATGAGATGGAGTTCACTG+AGG | - | chr4_3:13460306-13460325 | Msa0630930:CDS | 50.0% | |
TGAGATGGAGTTCACTGAGG+CGG | - | chr4_3:13460309-13460328 | Msa0630930:CDS | 50.0% | |
TCAAGATGCTACTGCAGAGG+AGG | - | chr4_3:13460372-13460391 | Msa0630930:CDS | 50.0% | |
AGAGATTACGAACCGGCAAC+AGG | + | chr4_3:13460495-13460514 | None:intergenic | 50.0% | |
ATCGACCCTACCGGACGTTA+CGG | - | chr4_3:13458207-13458226 | Msa0630930:three_prime_UTR | 55.0% | |
TACCACCGTAACGTCCGGTA+GGG | + | chr4_3:13458215-13458234 | None:intergenic | 55.0% | |
!! | AGAGGTACCACCGTAACGTC+CGG | + | chr4_3:13458220-13458239 | None:intergenic | 55.0% |
GGATCTTGAACCGGGAACGA+TGG | - | chr4_3:13458317-13458336 | Msa0630930:three_prime_UTR | 55.0% | |
CGGACACTATCCATCGTTCC+CGG | + | chr4_3:13458330-13458349 | None:intergenic | 55.0% | |
CGGGAACGATGGATAGTGTC+CGG | - | chr4_3:13458328-13458347 | Msa0630930:exon | 55.0% | |
ACGATGGATAGTGTCCGGTC+TGG | - | chr4_3:13458333-13458352 | Msa0630930:exon | 55.0% | |
GTGTTTGGTCAGAGTGGTGC+TGG | - | chr4_3:13458390-13458409 | Msa0630930:CDS | 55.0% | |
TCCCGTACATGCCTAATCCG+AGG | - | chr4_3:13458898-13458917 | Msa0630930:CDS | 55.0% | |
CTAGGTGGAGGAACTGGATC+TGG | - | chr4_3:13459397-13459416 | Msa0630930:intron | 55.0% | |
GCTCTGGTACACTCAAAGCC+CGG | + | chr4_3:13459943-13459962 | None:intergenic | 55.0% | |
! | TGTGCTGCTGACCCTAGACA+CGG | - | chr4_3:13459998-13460017 | Msa0630930:intron | 55.0% |
!! | GTGAGGTATCGTCCGTGTCT+AGG | + | chr4_3:13460013-13460032 | None:intergenic | 55.0% |
GCCATCTTCAACCCTGTTGG+TGG | + | chr4_3:13460169-13460188 | None:intergenic | 55.0% | |
GAAGTCGTTTGCGCCGAGCA+CGG | - | chr4_3:13458183-13458202 | Msa0630930:three_prime_UTR | 60.0% | |
! | GGTAGGGTCGATTCCGTGCT+CGG | + | chr4_3:13458199-13458218 | None:intergenic | 60.0% |
GAGCACGGAATCGACCCTAC+CGG | - | chr4_3:13458198-13458217 | Msa0630930:three_prime_UTR | 60.0% | |
GTACCACCGTAACGTCCGGT+AGG | + | chr4_3:13458216-13458235 | None:intergenic | 60.0% | |
AGTGTCCGGTCTGGACCGTA+CGG | - | chr4_3:13458342-13458361 | Msa0630930:exon | 60.0% | |
TCTGACCGTACGGTCCAGAC+CGG | + | chr4_3:13458350-13458369 | None:intergenic | 60.0% | |
GACCCTACCGGACGTTACGG+TGG | - | chr4_3:13458210-13458229 | Msa0630930:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 13458023 | 13460769 | 13458023 | ID=Msa0630930;Name=Msa0630930 |
chr4_3 | mRNA | 13458023 | 13460769 | 13458023 | ID=Msa0630930-mRNA-1;Parent=Msa0630930;Name=Msa0630930-mRNA-1;_AED=0.27;_eAED=0.27;_QI=97|1|1|1|1|1|3|322|449 |
chr4_3 | exon | 13458023 | 13459030 | 13458023 | ID=Msa0630930-mRNA-1:exon:3800;Parent=Msa0630930-mRNA-1 |
chr4_3 | exon | 13459146 | 13459415 | 13459146 | ID=Msa0630930-mRNA-1:exon:3799;Parent=Msa0630930-mRNA-1 |
chr4_3 | exon | 13460279 | 13460769 | 13460279 | ID=Msa0630930-mRNA-1:exon:3798;Parent=Msa0630930-mRNA-1 |
chr4_3 | five_prime_UTR | 13460673 | 13460769 | 13460673 | ID=Msa0630930-mRNA-1:five_prime_utr;Parent=Msa0630930-mRNA-1 |
chr4_3 | CDS | 13460279 | 13460672 | 13460279 | ID=Msa0630930-mRNA-1:cds;Parent=Msa0630930-mRNA-1 |
chr4_3 | CDS | 13459146 | 13459415 | 13459146 | ID=Msa0630930-mRNA-1:cds;Parent=Msa0630930-mRNA-1 |
chr4_3 | CDS | 13458345 | 13459030 | 13458345 | ID=Msa0630930-mRNA-1:cds;Parent=Msa0630930-mRNA-1 |
chr4_3 | three_prime_UTR | 13458023 | 13458344 | 13458023 | ID=Msa0630930-mRNA-1:three_prime_utr;Parent=Msa0630930-mRNA-1 |
Gene Sequence |
Protein sequence |