Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590630 | XP_003604816.1 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590630 | sp|P29501|TBB2_PEA | 97.763 | 447 | 10 | 0 | 3 | 449 | 1 | 447 | 0.0 | 928 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0435570 | Msa0590630 | 0.817865 | 2.641963e-52 | -8.615850e-47 |
| Msa0534390 | Msa0590630 | 0.881770 | 1.821221e-70 | -8.615850e-47 |
| Msa0590630 | Msa0590640 | 0.894318 | 2.761148e-75 | -8.615850e-47 |
| Msa0590630 | Msa0630930 | 0.808042 | 3.760636e-50 | -8.615850e-47 |
| Msa0590630 | Msa0630940 | 0.851489 | 8.587058e-61 | -8.615850e-47 |
| Msa0590630 | Msa0669170 | 0.900659 | 5.870598e-78 | -8.615850e-47 |
| Msa0590630 | Msa0669180 | 0.831196 | 1.914178e-55 | -8.615850e-47 |
| Msa0590630 | Msa0692790 | 0.841565 | 4.398469e-58 | -8.615850e-47 |
| Msa0590630 | Msa0700970 | 0.800685 | 1.283652e-48 | -8.615850e-47 |
| Msa0590630 | Msa0706760 | 0.805448 | 1.328489e-49 | -8.615850e-47 |
| Msa0590630 | Msa1035060 | 0.807221 | 5.618741e-50 | -8.615850e-47 |
| Msa0590630 | Msa1085330 | 0.840757 | 7.175832e-58 | -8.615850e-47 |
| Msa0590630 | Msa1123210 | 0.802892 | 4.520676e-49 | -8.615850e-47 |
| Msa0590630 | Msa1165090 | 0.801856 | 7.391041e-49 | -8.615850e-47 |
| Msa0590630 | Msa1348090 | 0.811607 | 6.434389e-51 | -8.615850e-47 |
| Msa0590630 | Msa1427110 | 0.803953 | 2.725537e-49 | -8.615850e-47 |
| Msa0590630 | Msa1450520 | 0.800370 | 1.488064e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590630 | MtrunA17_Chr4g0008361 | 99.777 | 449 | 1 | 0 | 1 | 449 | 1 | 449 | 0.0 | 945 |
| Msa0590630 | MtrunA17_Chr4g0008401 | 98.214 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
| Msa0590630 | MtrunA17_Chr1g0203181 | 97.674 | 430 | 10 | 0 | 1 | 430 | 1 | 430 | 0.0 | 862 |
| Msa0590630 | MtrunA17_Chr7g0255791 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 852 |
| Msa0590630 | MtrunA17_Chr2g0292921 | 95.814 | 430 | 18 | 0 | 1 | 430 | 1 | 430 | 0.0 | 846 |
| Msa0590630 | MtrunA17_Chr4g0007371 | 95.370 | 432 | 18 | 1 | 1 | 430 | 1 | 432 | 0.0 | 842 |
| Msa0590630 | MtrunA17_Chr4g0051631 | 94.651 | 430 | 23 | 0 | 1 | 430 | 1 | 430 | 0.0 | 838 |
| Msa0590630 | MtrunA17_Chr3g0142731 | 92.361 | 432 | 31 | 1 | 1 | 430 | 1 | 432 | 0.0 | 823 |
| Msa0590630 | MtrunA17_Chr8g0393021 | 89.955 | 448 | 39 | 2 | 1 | 447 | 1 | 443 | 0.0 | 823 |
| Msa0590630 | MtrunA17_Chr8g0386781 | 90.930 | 430 | 39 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
| Msa0590630 | MtrunA17_Chr8g0378821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 7.67e-125 | 370 |
| Msa0590630 | MtrunA17_Chr3g0140821 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 7.56e-124 | 367 |
| Msa0590630 | MtrunA17_Chr1g0206881 | 41.242 | 451 | 252 | 3 | 1 | 441 | 1 | 448 | 1.71e-123 | 366 |
| Msa0590630 | MtrunA17_Chr7g0253411 | 41.014 | 434 | 246 | 2 | 1 | 424 | 1 | 434 | 7.96e-123 | 365 |
| Msa0590630 | MtrunA17_Chr4g0054511 | 41.324 | 438 | 239 | 3 | 1 | 424 | 1 | 434 | 1.01e-121 | 362 |
| Msa0590630 | MtrunA17_Chr6g0461281 | 40.177 | 453 | 255 | 3 | 1 | 442 | 1 | 448 | 9.12e-121 | 359 |
| Msa0590630 | MtrunA17_Chr2g0300491 | 36.957 | 460 | 270 | 6 | 1 | 449 | 1 | 451 | 8.01e-99 | 304 |
| Msa0590630 | MtrunA17_Chr2g0300671 | 37.413 | 433 | 260 | 3 | 1 | 425 | 1 | 430 | 8.25e-99 | 303 |
| Msa0590630 | MtrunA17_Chr7g0275431 | 35.160 | 438 | 267 | 7 | 2 | 423 | 3 | 439 | 1.64e-96 | 298 |
| Msa0590630 | MtrunA17_Chr3g0109241 | 31.852 | 135 | 84 | 1 | 269 | 395 | 4 | 138 | 5.62e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590630 | AT5G62690.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| Msa0590630 | AT5G62700.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| Msa0590630 | AT5G23860.2 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| Msa0590630 | AT5G23860.1 | 97.442 | 430 | 11 | 0 | 1 | 430 | 1 | 430 | 0.0 | 860 |
| Msa0590630 | AT5G12250.1 | 96.279 | 430 | 16 | 0 | 1 | 430 | 1 | 430 | 0.0 | 850 |
| Msa0590630 | AT2G29550.1 | 95.824 | 431 | 18 | 0 | 1 | 431 | 1 | 431 | 0.0 | 848 |
| Msa0590630 | AT1G75780.1 | 93.735 | 431 | 26 | 1 | 1 | 430 | 1 | 431 | 0.0 | 835 |
| Msa0590630 | AT1G20010.1 | 93.271 | 431 | 28 | 1 | 1 | 430 | 1 | 431 | 0.0 | 830 |
| Msa0590630 | AT4G20890.1 | 93.256 | 430 | 29 | 0 | 1 | 430 | 1 | 430 | 0.0 | 827 |
| Msa0590630 | AT5G44340.1 | 92.791 | 430 | 31 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa0590630 | AT5G19780.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
| Msa0590630 | AT5G19770.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 1.56e-124 | 369 |
| Msa0590630 | AT1G64740.1 | 41.244 | 434 | 245 | 2 | 1 | 424 | 1 | 434 | 3.31e-124 | 369 |
| Msa0590630 | AT4G14960.2 | 41.705 | 434 | 243 | 2 | 1 | 424 | 1 | 434 | 1.54e-122 | 364 |
| Msa0590630 | AT1G50010.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.94e-122 | 362 |
| Msa0590630 | AT1G04820.1 | 41.475 | 434 | 244 | 2 | 1 | 424 | 1 | 434 | 9.94e-122 | 362 |
| Msa0590630 | AT4G14960.1 | 41.710 | 386 | 215 | 2 | 1 | 376 | 1 | 386 | 5.68e-103 | 313 |
| Msa0590630 | AT5G05620.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 7.86e-97 | 299 |
| Msa0590630 | AT3G61650.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 1.10e-96 | 299 |
Find 140 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGAGGGTTTGAAAATT+AGG | 0.112448 | 4_2:+14198056 | None:intergenic |
| ACCAAATCGGTGCAAAATTC+TGG | 0.193523 | 4_2:-14197944 | Msa0590630:CDS |
| GTTGTGAAGAAATTGAAATT+AGG | 0.267917 | 4_2:+14198010 | None:intergenic |
| CACATGTTGTTTGAGGTTCC+CGG | 0.270190 | 4_2:-14196303 | Msa0590630:CDS |
| AAGAGAGGGTTTGAAAATTA+GGG | 0.278222 | 4_2:+14198057 | None:intergenic |
| ACAGTTGATTTGACATTGTT+TGG | 0.282851 | 4_2:+14195975 | None:intergenic |
| TTGAAATTAGGGTTTGAAAA+TGG | 0.296491 | 4_2:+14198022 | None:intergenic |
| CGGAAACTCGACTTCAATTC+AGG | 0.306021 | 4_2:-14195907 | Msa0590630:CDS |
| TTGTGAAGAAATTGAAATTA+GGG | 0.312935 | 4_2:+14198011 | None:intergenic |
| GGATCTTGAACCGGGGACTA+TGG | 0.319517 | 4_2:-14197787 | Msa0590630:CDS |
| CCCTTCTCATTTCAAAGATC+AGG | 0.337039 | 4_2:-14196681 | Msa0590630:CDS |
| TGAGAATTGTGATTGCTTGC+AGG | 0.369709 | 4_2:-14197613 | Msa0590630:CDS |
| AGCAGCACACATCATGTTCT+TGG | 0.381073 | 4_2:+14196124 | None:intergenic |
| GTGAGGTATCGTCCGTGTCT+AGG | 0.392730 | 4_2:+14196098 | None:intergenic |
| CTAGGTGGAGGAACTGGATC+TGG | 0.402050 | 4_2:-14196712 | Msa0590630:CDS |
| CACTGCTATGTTCAGGAGAA+AGG | 0.402943 | 4_2:-14195856 | Msa0590630:CDS |
| CGTTCCTCGTGCGATTCTGA+TGG | 0.410171 | 4_2:-14197808 | Msa0590630:CDS |
| GTTTGTGATATTCCACCAAC+AGG | 0.410840 | 4_2:-14195954 | Msa0590630:CDS |
| TATCTGCAACTTCCTGTTGC+CGG | 0.413564 | 4_2:-14195628 | Msa0590630:three_prime_UTR |
| AGAGTGGTGCTGGTAACAAT+TGG | 0.420469 | 4_2:-14197704 | Msa0590630:CDS |
| TGGAAGAGAGAAAGAAAGAG+AGG | 0.420760 | 4_2:+14198042 | None:intergenic |
| CCCTGATCTTTGAAATGAGA+AGG | 0.422142 | 4_2:+14196680 | None:intergenic |
| CACCGATTTGGTTACCGCAT+TGG | 0.424568 | 4_2:+14197955 | None:intergenic |
| TATAAACTAGCTTACAGCTT+GGG | 0.426537 | 4_2:+14196470 | None:intergenic |
| CATTCACTAGGTGGAGGAAC+TGG | 0.427410 | 4_2:-14196718 | Msa0590630:CDS |
| AACAGATAAAGTAGCATTGT+AGG | 0.434815 | 4_2:+14196582 | None:intergenic |
| GGTTCGTAATCTCTGTTGTA+AGG | 0.435528 | 4_2:-14195607 | Msa0590630:three_prime_UTR |
| CCAAATCGGTGCAAAATTCT+GGG | 0.441500 | 4_2:-14197943 | Msa0590630:CDS |
| TTGATATCAGCTACCATGTC+TGG | 0.442320 | 4_2:-14196329 | Msa0590630:CDS |
| CGTGAGATTCTTCACATTCA+AGG | 0.442432 | 4_2:-14197981 | Msa0590630:CDS |
| AACAGTTCACTGCTATGTTC+AGG | 0.442593 | 4_2:-14195863 | Msa0590630:CDS |
| CAAGAGGTTCTCAGCAGTAC+CGG | 0.448911 | 4_2:-14196187 | Msa0590630:CDS |
| AGAGATTACGAACCGGCAAC+AGG | 0.449290 | 4_2:+14195616 | None:intergenic |
| GATTCTGATGGATCTTGAAC+CGG | 0.450792 | 4_2:-14197796 | Msa0590630:CDS |
| ACCACAGTGTCAGAAACCTT+TGG | 0.453492 | 4_2:+14196610 | None:intergenic |
| GTGTTTGGTCAGAGTGGTGC+TGG | 0.456694 | 4_2:-14197714 | Msa0590630:CDS |
| CACCTAGTGAATGACATACT+TGG | 0.458399 | 4_2:+14196728 | None:intergenic |
| GGTAGGGTCGATTCCATGTT+CGG | 0.466690 | 4_2:+14197908 | None:intergenic |
| CACATTTGCTGTGTGAGCTC+CGG | 0.476415 | 4_2:+14196152 | None:intergenic |
| GGAGAAAGGCTTTCTTGCAT+TGG | 0.478824 | 4_2:-14195842 | Msa0590630:CDS |
| GGAGGAACTGGATCTGGAAT+GGG | 0.479696 | 4_2:-14196706 | Msa0590630:CDS |
| CTGTTTCTGTGTAACAATGT+TGG | 0.480892 | 4_2:-14195537 | Msa0590630:three_prime_UTR |
| AAAGTAAGCATCATCCTGTC+CGG | 0.480930 | 4_2:+14196649 | None:intergenic |
| GGCCAATGCGGTAACCAAAT+CGG | 0.482396 | 4_2:-14197957 | Msa0590630:CDS |
| TGGAGGAACTGGATCTGGAA+TGG | 0.483395 | 4_2:-14196707 | Msa0590630:CDS |
| CTGGTGTCACATGTTGTTTG+AGG | 0.483612 | 4_2:-14196310 | Msa0590630:CDS |
| CGGTGCAAAATTCTGGGAAG+TGG | 0.483786 | 4_2:-14197937 | Msa0590630:CDS |
| GGATGAGTATGAAGATGAAG+AGG | 0.487277 | 4_2:-14195715 | Msa0590630:CDS |
| CCTGATCTTTGAAATGAGAA+GGG | 0.489164 | 4_2:+14196681 | None:intergenic |
| TGAGGTATCGTCCGTGTCTA+GGG | 0.489268 | 4_2:+14196099 | None:intergenic |
| GGGTGGTAAGCTTGAGAGTA+CGG | 0.497426 | 4_2:+14196491 | None:intergenic |
| TGAGTATGAAGATGAAGAGG+AGG | 0.497865 | 4_2:-14195712 | Msa0590630:CDS |
| TCCACCAACAGGGTTGAAGA+TGG | 0.506013 | 4_2:-14195943 | Msa0590630:CDS |
| GCTTTCTTGCATTGGTACAC+TGG | 0.506815 | 4_2:-14195834 | Msa0590630:CDS |
| TATTGATTCTGTTCTTGATG+TGG | 0.507739 | 4_2:-14197649 | Msa0590630:CDS |
| TGAAAATGCAGATGAATGTA+TGG | 0.507784 | 4_2:-14196548 | Msa0590630:CDS |
| TTGCATTGGTACACTGGTGA+AGG | 0.510492 | 4_2:-14195828 | Msa0590630:CDS |
| TGACCAAACACAAAATTATC+CGG | 0.511815 | 4_2:+14197726 | None:intergenic |
| ATTCTGTTCTTGATGTGGTT+AGG | 0.512402 | 4_2:-14197644 | Msa0590630:CDS |
| TGAACTGTTCACTCACCCTT+CGG | 0.513958 | 4_2:+14195877 | None:intergenic |
| CGGAGCTCACACAGCAAATG+TGG | 0.517177 | 4_2:-14196151 | Msa0590630:CDS |
| ATTCTGATGGATCTTGAACC+GGG | 0.518607 | 4_2:-14197795 | Msa0590630:CDS |
| AGATCAGAGTTTAGCTGACC+CGG | 0.520115 | 4_2:+14196284 | None:intergenic |
| AAGATGGCTTCTACATTCAT+CGG | 0.521508 | 4_2:-14195927 | Msa0590630:CDS |
| CCTTCTCATTTCAAAGATCA+GGG | 0.521900 | 4_2:-14196680 | Msa0590630:CDS |
| GAATCGCACGAGGAACGAAC+CGG | 0.524358 | 4_2:+14197814 | None:intergenic |
| ACATGTTGTTTGAGGTTCCC+GGG | 0.524411 | 4_2:-14196302 | Msa0590630:CDS |
| GTTCGTAATCTCTGTTGTAA+GGG | 0.531633 | 4_2:-14195606 | Msa0590630:three_prime_UTR |
| GCCATCTTCAACCCTGTTGG+TGG | 0.532132 | 4_2:+14195942 | None:intergenic |
| GAGTGGTGCTGGTAACAATT+GGG | 0.532634 | 4_2:-14197703 | Msa0590630:CDS |
| AAGAGGTTCTCAGCAGTACC+GGG | 0.534007 | 4_2:-14196186 | Msa0590630:CDS |
| ACTATGGATAGTGTCCGGTC+TGG | 0.534394 | 4_2:-14197771 | Msa0590630:CDS |
| CTGGTAACAATTGGGCGAAA+GGG | 0.534664 | 4_2:-14197695 | Msa0590630:CDS |
| ACTCGTCCTACTTTGTCGAA+TGG | 0.535185 | 4_2:-14196001 | Msa0590630:CDS |
| TCCAAAGGTTTCTGACACTG+TGG | 0.539429 | 4_2:-14196611 | Msa0590630:CDS |
| GAAGTGGTTTGCGCCGAACA+TGG | 0.540201 | 4_2:-14197921 | Msa0590630:CDS |
| TTTGCACCTTTGACTTCAAG+AGG | 0.541243 | 4_2:-14196203 | Msa0590630:CDS |
| TGAAGAGGAGGATTATCAGC+AGG | 0.542245 | 4_2:-14195700 | Msa0590630:CDS |
| GTGTCAGAAACCTTTGGAGA+AGG | 0.546100 | 4_2:+14196616 | None:intergenic |
| TGTCAGAAACCTTTGGAGAA+GGG | 0.548719 | 4_2:+14196617 | None:intergenic |
| GCTGGTAACAATTGGGCGAA+AGG | 0.549775 | 4_2:-14197696 | Msa0590630:CDS |
| ATCGACCCTACCGGACGCTA+CGG | 0.553152 | 4_2:-14197897 | Msa0590630:CDS |
| TCAGGGAAGAATACCCGGAC+AGG | 0.557496 | 4_2:-14196663 | Msa0590630:CDS |
| GAGAATTGTGATTGCTTGCA+GGG | 0.561746 | 4_2:-14197612 | Msa0590630:intron |
| TTGGTACACTGGTGAAGGAA+TGG | 0.562019 | 4_2:-14195823 | Msa0590630:CDS |
| TGGAATCCATTCGACAAAGT+AGG | 0.564196 | 4_2:+14195995 | None:intergenic |
| CGGGGACTATGGATAGTGTC+CGG | 0.570224 | 4_2:-14197776 | Msa0590630:CDS |
| AGAGGTACCACCGTAGCGTC+CGG | 0.571500 | 4_2:+14197887 | None:intergenic |
| AGTGTCCGGTCTGGACCGTA+CGG | 0.574566 | 4_2:-14197762 | Msa0590630:CDS |
| AAGTAAGCATCATCCTGTCC+GGG | 0.576330 | 4_2:+14196650 | None:intergenic |
| GAACATGGAATCGACCCTAC+CGG | 0.577600 | 4_2:-14197906 | Msa0590630:CDS |
| TACTACAACGAAGCTAGTTG+TGG | 0.580397 | 4_2:-14197837 | Msa0590630:CDS |
| TGAGAACCTCTTGAAGTCAA+AGG | 0.582877 | 4_2:+14196197 | None:intergenic |
| GCGAAAGGGCATTATACTGA+AGG | 0.583564 | 4_2:-14197681 | Msa0590630:CDS |
| CAATTCAGGAAATGTTCCGA+AGG | 0.586545 | 4_2:-14195893 | Msa0590630:CDS |
| GTACCGGGCTTTGAGTGTAC+CGG | 0.586867 | 4_2:-14196171 | Msa0590630:CDS |
| GGAAGAGAGAAAGAAAGAGA+GGG | 0.588249 | 4_2:+14198043 | None:intergenic |
| TCAAGATGCTACTGCAGAGG+AGG | 0.589411 | 4_2:-14195736 | Msa0590630:CDS |
| TTACAACAGAGATTACGAAC+CGG | 0.590375 | 4_2:+14195609 | None:intergenic |
| GAAGCCATCTTCAACCCTGT+TGG | 0.595148 | 4_2:+14195939 | None:intergenic |
| CGAAAGGGCATTATACTGAA+GGG | 0.595257 | 4_2:-14197680 | Msa0590630:CDS |
| TCGCTCAAGTTGAAGTTCAG+AGG | 0.597388 | 4_2:+14197869 | None:intergenic |
| ACGGAAGCAAATATCATACA+AGG | 0.601543 | 4_2:+14196510 | None:intergenic |
| ACAGATAAAGTAGCATTGTA+GGG | 0.601899 | 4_2:+14196583 | None:intergenic |
| TGGTGAAGGAATGGATGAGA+TGG | 0.601920 | 4_2:-14195814 | Msa0590630:CDS |
| ATAAACTAGCTTACAGCTTG+GGG | 0.606377 | 4_2:+14196471 | None:intergenic |
| TCTGACCGTACGGTCCAGAC+CGG | 0.610666 | 4_2:+14197757 | None:intergenic |
| ACTGCATCAGCCATCTTCAG+AGG | 0.610984 | 4_2:-14196077 | Msa0590630:CDS |
| CAAGTATGTCATTCACTAGG+TGG | 0.612941 | 4_2:-14196727 | Msa0590630:CDS |
| TTCTGATGGATCTTGAACCG+GGG | 0.614023 | 4_2:-14197794 | Msa0590630:CDS |
| AAAGATCAGGGAAGAATACC+CGG | 0.614075 | 4_2:-14196668 | Msa0590630:CDS |
| TTCGTAATCTCTGTTGTAAG+GGG | 0.614198 | 4_2:-14195605 | Msa0590630:three_prime_UTR |
| CACATTCAAGGTGGCCAATG+CGG | 0.615773 | 4_2:-14197969 | Msa0590630:CDS |
| AACTAGCTTACAGCTTGGGG+TGG | 0.617330 | 4_2:+14196474 | None:intergenic |
| CAACATGAATGATCTTGTGT+CGG | 0.617924 | 4_2:-14195772 | Msa0590630:CDS |
| GTATGTCATTCACTAGGTGG+AGG | 0.621491 | 4_2:-14196724 | Msa0590630:CDS |
| GAAAGGGCATTATACTGAAG+GGG | 0.624665 | 4_2:-14197679 | Msa0590630:CDS |
| TTCCAAGTATGTCATTCACT+AGG | 0.630377 | 4_2:-14196730 | Msa0590630:CDS |
| GTACCACCGTAGCGTCCGGT+AGG | 0.632327 | 4_2:+14197891 | None:intergenic |
| GCTCCGGTACACTCAAAGCC+CGG | 0.632765 | 4_2:+14196168 | None:intergenic |
| GTCAGCTAAACTCTGATCTG+AGG | 0.634430 | 4_2:-14196280 | Msa0590630:CDS |
| ACAACGAAGCTAGTTGTGGC+CGG | 0.636769 | 4_2:-14197833 | Msa0590630:CDS |
| GTACGGTCAGATCTTTAGAC+CGG | 0.637619 | 4_2:-14197745 | Msa0590630:CDS |
| ACATGGTAGCTGATATCAAG+TGG | 0.640117 | 4_2:+14196333 | None:intergenic |
| AATTCAGGAAATGTTCCGAA+GGG | 0.640149 | 4_2:-14195892 | Msa0590630:CDS |
| ATATCAAGATGCTACTGCAG+AGG | 0.642344 | 4_2:-14195739 | Msa0590630:CDS |
| TACCACCGTAGCGTCCGGTA+GGG | 0.643273 | 4_2:+14197892 | None:intergenic |
| TGAGATGGAGTTCACTGAGG+CGG | 0.651559 | 4_2:-14195799 | Msa0590630:CDS |
| GGTCTAAAGATCTGACCGTA+CGG | 0.651719 | 4_2:+14197747 | None:intergenic |
| GATCAGAGTTTAGCTGACCC+GGG | 0.652525 | 4_2:+14196285 | None:intergenic |
| GACCCTACCGGACGCTACGG+TGG | 0.654052 | 4_2:-14197894 | Msa0590630:CDS |
| CGGACACTATCCATAGTCCC+CGG | 0.661730 | 4_2:+14197777 | None:intergenic |
| TTTGTGATATTCCACCAACA+GGG | 0.665479 | 4_2:-14195953 | Msa0590630:CDS |
| GGAGCTCACACAGCAAATGT+GGG | 0.673131 | 4_2:-14196150 | Msa0590630:CDS |
| ACAACATGTGACACCAGACA+TGG | 0.683355 | 4_2:+14196316 | None:intergenic |
| AGATCCATCAGAATCGCACG+AGG | 0.702678 | 4_2:+14197804 | None:intergenic |
| GAGATTCTTCACATTCAAGG+TGG | 0.707839 | 4_2:-14197978 | Msa0590630:CDS |
| TGTGCTGCTGACCCTAGACA+CGG | 0.727199 | 4_2:-14196110 | Msa0590630:CDS |
| TGAAGATGGCTGATGCAGTG+AGG | 0.739156 | 4_2:+14196081 | None:intergenic |
| GGATGAGATGGAGTTCACTG+AGG | 0.753115 | 4_2:-14195802 | Msa0590630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTGTTTTTGAAATTT+AGG | - | chr4_2:14195988-14196007 | Msa0590630:CDS | 15.0% |
| !!! | TGATTTGTTTTTGAAATTTA+GGG | - | chr4_2:14195989-14196008 | Msa0590630:CDS | 15.0% |
| !!! | GTATTAATTTTAATATGAAG+TGG | - | chr4_2:14196422-14196441 | Msa0590630:intron | 15.0% |
| !! | TTGTGAAGAAATTGAAATTA+GGG | + | chr4_2:14195550-14195569 | None:intergenic | 20.0% |
| !!! | TTACTTTTTACAGAATTTTG+TGG | - | chr4_2:14196101-14196120 | Msa0590630:CDS | 20.0% |
| !!! | TACTTTTTACAGAATTTTGT+GGG | - | chr4_2:14196102-14196121 | Msa0590630:CDS | 20.0% |
| !!! | ACTTCATTGTTTATGAATTT+TGG | - | chr4_2:14196696-14196715 | Msa0590630:CDS | 20.0% |
| !!! | CTTCATTGTTTATGAATTTT+GGG | - | chr4_2:14196697-14196716 | Msa0590630:CDS | 20.0% |
| !! | AACAAACTTGAAAACATATA+TGG | + | chr4_2:14197140-14197159 | None:intergenic | 20.0% |
| !! | TTTGTTACATTTGTTCAAAA+AGG | - | chr4_2:14197154-14197173 | Msa0590630:intron | 20.0% |
| !!! | TTCAAAAAGGTTTCTAATTT+TGG | - | chr4_2:14197167-14197186 | Msa0590630:intron | 20.0% |
| ! | TTGAAATTAGGGTTTGAAAA+TGG | + | chr4_2:14195539-14195558 | None:intergenic | 25.0% |
| ! | GTTGTGAAGAAATTGAAATT+AGG | + | chr4_2:14195551-14195570 | None:intergenic | 25.0% |
| !!! | GTATGTGTTAATTTTGCTAT+AGG | - | chr4_2:14196139-14196158 | Msa0590630:CDS | 25.0% |
| !! | GGAATATTTTGCATGATTTA+TGG | - | chr4_2:14196163-14196182 | Msa0590630:CDS | 25.0% |
| ! | TTAATGAAATGAAGTCTACA+TGG | - | chr4_2:14196229-14196248 | Msa0590630:CDS | 25.0% |
| !! | TTTTGCATCTGATTTTGAAT+TGG | - | chr4_2:14196564-14196583 | Msa0590630:CDS | 25.0% |
| !! | TTTGCATCTGATTTTGAATT+GGG | - | chr4_2:14196565-14196584 | Msa0590630:CDS | 25.0% |
| !! | ATGTTGCTGTTAAGTTAATT+GGG | - | chr4_2:14196635-14196654 | Msa0590630:CDS | 25.0% |
| !!! | TTTGGGTTTGCTATATAATA+TGG | - | chr4_2:14196714-14196733 | Msa0590630:CDS | 25.0% |
| !!! | TTGGGTTTGCTATATAATAT+GGG | - | chr4_2:14196715-14196734 | Msa0590630:CDS | 25.0% |
| !!! | TGGGTGTTTTTTAATGTAAA+AGG | - | chr4_2:14196734-14196753 | Msa0590630:CDS | 25.0% |
| !!! | GGGTGTTTTTTAATGTAAAA+GGG | - | chr4_2:14196735-14196754 | Msa0590630:CDS | 25.0% |
| ! | AAAGAAAGTGATTAGAAATG+AGG | + | chr4_2:14197114-14197133 | None:intergenic | 25.0% |
| ! | AGAAAAAATTTCATAACAGC+CGG | + | chr4_2:14197990-14198009 | None:intergenic | 25.0% |
| AAGAGAGGGTTTGAAAATTA+GGG | + | chr4_2:14195504-14195523 | None:intergenic | 30.0% | |
| AAAGAGAGGGTTTGAAAATT+AGG | + | chr4_2:14195505-14195524 | None:intergenic | 30.0% | |
| TGACCAAACACAAAATTATC+CGG | + | chr4_2:14195835-14195854 | None:intergenic | 30.0% | |
| !! | TATTGATTCTGTTCTTGATG+TGG | - | chr4_2:14195909-14195928 | Msa0590630:CDS | 30.0% |
| !!! | TTGTTGATTTTGAGTGTTTG+TGG | - | chr4_2:14196014-14196033 | Msa0590630:CDS | 30.0% |
| !!! | TTTTGTGGGTTAATTTGTCA+TGG | - | chr4_2:14196116-14196135 | Msa0590630:CDS | 30.0% |
| !! | TTTGTGGGTTAATTTGTCAT+GGG | - | chr4_2:14196117-14196136 | Msa0590630:CDS | 30.0% |
| !! | TGTGTTAATTTTGCTATAGG+TGG | - | chr4_2:14196142-14196161 | Msa0590630:CDS | 30.0% |
| ATTCATTGTGTCATATGTGT+TGG | - | chr4_2:14196323-14196342 | Msa0590630:CDS | 30.0% | |
| !! | ATAGTTTATAGAGCGTTTTG+CGG | - | chr4_2:14196392-14196411 | Msa0590630:intron | 30.0% |
| !!! | AAATGAGTGCCTTTTTTTGT+CGG | - | chr4_2:14196506-14196525 | Msa0590630:CDS | 30.0% |
| CATTCAATTCCGACAAAAAA+AGG | + | chr4_2:14196518-14196537 | None:intergenic | 30.0% | |
| ! | CATGTTGCTGTTAAGTTAAT+TGG | - | chr4_2:14196634-14196653 | Msa0590630:CDS | 30.0% |
| GGTATACTTTGATTGTTATG+TGG | - | chr4_2:14196756-14196775 | Msa0590630:intron | 30.0% | |
| !! | TTATGTGGCTGATTTTGAAA+TGG | - | chr4_2:14196771-14196790 | Msa0590630:intron | 30.0% |
| !!! | TATGTGGCTGATTTTGAAAT+GGG | - | chr4_2:14196772-14196791 | Msa0590630:intron | 30.0% |
| ! | TTTTATTCTTTTGTCTGTGC+AGG | - | chr4_2:14196804-14196823 | Msa0590630:intron | 30.0% |
| ACAGATAAAGTAGCATTGTA+GGG | + | chr4_2:14196978-14196997 | None:intergenic | 30.0% | |
| AACAGATAAAGTAGCATTGT+AGG | + | chr4_2:14196979-14196998 | None:intergenic | 30.0% | |
| TGAAAATGCAGATGAATGTA+TGG | - | chr4_2:14197010-14197029 | Msa0590630:intron | 30.0% | |
| ! | TATAAACTAGCTTACAGCTT+GGG | + | chr4_2:14197091-14197110 | None:intergenic | 30.0% |
| !! | ACAGTTGATTTGACATTGTT+TGG | + | chr4_2:14197586-14197605 | None:intergenic | 30.0% |
| !!! | GGCTGTTATGAAATTTTTTC+TGG | - | chr4_2:14197989-14198008 | Msa0590630:exon | 30.0% |
| ! | AGACCGGATAATTTTGTGTT+TGG | - | chr4_2:14195829-14195848 | Msa0590630:CDS | 35.0% |
| ! | AATTTTGTGTTTGGTCAGAG+TGG | - | chr4_2:14195838-14195857 | Msa0590630:CDS | 35.0% |
| ATTCTGTTCTTGATGTGGTT+AGG | - | chr4_2:14195914-14195933 | Msa0590630:CDS | 35.0% | |
| TGATTATGAAGCACGAACAT+TGG | - | chr4_2:14196258-14196277 | Msa0590630:CDS | 35.0% | |
| GCTCTATAAACTATGAAGCA+CGG | + | chr4_2:14196386-14196405 | None:intergenic | 35.0% | |
| TTCCAAGTATGTCATTCACT+AGG | - | chr4_2:14196828-14196847 | Msa0590630:intron | 35.0% | |
| !! | CCTGATCTTTGAAATGAGAA+GGG | + | chr4_2:14196880-14196899 | None:intergenic | 35.0% |
| CCTTCTCATTTCAAAGATCA+GGG | - | chr4_2:14196878-14196897 | Msa0590630:intron | 35.0% | |
| ACGGAAGCAAATATCATACA+AGG | + | chr4_2:14197051-14197070 | None:intergenic | 35.0% | |
| ! | ATAAACTAGCTTACAGCTTG+GGG | + | chr4_2:14197090-14197109 | None:intergenic | 35.0% |
| ! | GTATAAACTAGCTTACAGCT+TGG | + | chr4_2:14197092-14197111 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTTGTGATGCAGT+TGG | - | chr4_2:14197193-14197212 | Msa0590630:intron | 35.0% |
| AACCCAACATGAAAAAGTGA+AGG | + | chr4_2:14197336-14197355 | None:intergenic | 35.0% | |
| TTTGTGATATTCCACCAACA+GGG | - | chr4_2:14197605-14197624 | Msa0590630:intron | 35.0% | |
| AAGATGGCTTCTACATTCAT+CGG | - | chr4_2:14197631-14197650 | Msa0590630:CDS | 35.0% | |
| AATTCAGGAAATGTTCCGAA+GGG | - | chr4_2:14197666-14197685 | Msa0590630:CDS | 35.0% | |
| CAACATGAATGATCTTGTGT+CGG | - | chr4_2:14197786-14197805 | Msa0590630:CDS | 35.0% | |
| ! | TATGTTGATGCTTTTCGCAA+TGG | - | chr4_2:14197899-14197918 | Msa0590630:CDS | 35.0% |
| TTACAACAGAGATTACGAAC+CGG | + | chr4_2:14197952-14197971 | None:intergenic | 35.0% | |
| GTTCGTAATCTCTGTTGTAA+GGG | - | chr4_2:14197952-14197971 | Msa0590630:CDS | 35.0% | |
| TTCGTAATCTCTGTTGTAAG+GGG | - | chr4_2:14197953-14197972 | Msa0590630:CDS | 35.0% | |
| !! | CTGTTTCTGTGTAACAATGT+TGG | - | chr4_2:14198021-14198040 | Msa0590630:five_prime_UTR | 35.0% |
| GGAAGAGAGAAAGAAAGAGA+GGG | + | chr4_2:14195518-14195537 | None:intergenic | 40.0% | |
| TGGAAGAGAGAAAGAAAGAG+AGG | + | chr4_2:14195519-14195538 | None:intergenic | 40.0% | |
| CGTGAGATTCTTCACATTCA+AGG | - | chr4_2:14195577-14195596 | Msa0590630:three_prime_UTR | 40.0% | |
| GAGATTCTTCACATTCAAGG+TGG | - | chr4_2:14195580-14195599 | Msa0590630:three_prime_UTR | 40.0% | |
| ACCAAATCGGTGCAAAATTC+TGG | - | chr4_2:14195614-14195633 | Msa0590630:three_prime_UTR | 40.0% | |
| CCAAATCGGTGCAAAATTCT+GGG | - | chr4_2:14195615-14195634 | Msa0590630:three_prime_UTR | 40.0% | |
| TACTACAACGAAGCTAGTTG+TGG | - | chr4_2:14195721-14195740 | Msa0590630:CDS | 40.0% | |
| ! | GATTCTGATGGATCTTGAAC+CGG | - | chr4_2:14195762-14195781 | Msa0590630:CDS | 40.0% |
| ! | ATTCTGATGGATCTTGAACC+GGG | - | chr4_2:14195763-14195782 | Msa0590630:CDS | 40.0% |
| !! | CGAAAGGGCATTATACTGAA+GGG | - | chr4_2:14195878-14195897 | Msa0590630:CDS | 40.0% |
| !! | GAAAGGGCATTATACTGAAG+GGG | - | chr4_2:14195879-14195898 | Msa0590630:CDS | 40.0% |
| TGAGAATTGTGATTGCTTGC+AGG | - | chr4_2:14195945-14195964 | Msa0590630:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+GGG | - | chr4_2:14195946-14195965 | Msa0590630:CDS | 40.0% | |
| !! | TTGTGTGTGAGCTTTTTCTC+AGG | - | chr4_2:14196591-14196610 | Msa0590630:CDS | 40.0% |
| CACCTAGTGAATGACATACT+TGG | + | chr4_2:14196833-14196852 | None:intergenic | 40.0% | |
| CAAGTATGTCATTCACTAGG+TGG | - | chr4_2:14196831-14196850 | Msa0590630:intron | 40.0% | |
| CCCTTCTCATTTCAAAGATC+AGG | - | chr4_2:14196877-14196896 | Msa0590630:intron | 40.0% | |
| !! | CCCTGATCTTTGAAATGAGA+AGG | + | chr4_2:14196881-14196900 | None:intergenic | 40.0% |
| AAAGATCAGGGAAGAATACC+CGG | - | chr4_2:14196890-14196909 | Msa0590630:intron | 40.0% | |
| AAAGTAAGCATCATCCTGTC+CGG | + | chr4_2:14196912-14196931 | None:intergenic | 40.0% | |
| ! | TGTCAGAAACCTTTGGAGAA+GGG | + | chr4_2:14196944-14196963 | None:intergenic | 40.0% |
| ! | CATCTGCATTTTCAACAAGC+TGG | + | chr4_2:14197004-14197023 | None:intergenic | 40.0% |
| ACATGGTAGCTGATATCAAG+TGG | + | chr4_2:14197228-14197247 | None:intergenic | 40.0% | |
| TTGATATCAGCTACCATGTC+TGG | - | chr4_2:14197229-14197248 | Msa0590630:intron | 40.0% | |
| ACATGAAAAAGTGAAGGCGA+GGG | + | chr4_2:14197330-14197349 | None:intergenic | 40.0% | |
| AACATGAAAAAGTGAAGGCG+AGG | + | chr4_2:14197331-14197350 | None:intergenic | 40.0% | |
| !!! | TCGCCTTCACTTTTTCATGT+TGG | - | chr4_2:14197330-14197349 | Msa0590630:intron | 40.0% |
| !!! | CGCCTTCACTTTTTCATGTT+GGG | - | chr4_2:14197331-14197350 | Msa0590630:intron | 40.0% |
| ! | TTTGCACCTTTGACTTCAAG+AGG | - | chr4_2:14197355-14197374 | Msa0590630:intron | 40.0% |
| TGAGAACCTCTTGAAGTCAA+AGG | + | chr4_2:14197364-14197383 | None:intergenic | 40.0% | |
| TGGAATCCATTCGACAAAGT+AGG | + | chr4_2:14197566-14197585 | None:intergenic | 40.0% | |
| GTTTGTGATATTCCACCAAC+AGG | - | chr4_2:14197604-14197623 | Msa0590630:intron | 40.0% | |
| CAATTCAGGAAATGTTCCGA+AGG | - | chr4_2:14197665-14197684 | Msa0590630:CDS | 40.0% | |
| AACAGTTCACTGCTATGTTC+AGG | - | chr4_2:14197695-14197714 | Msa0590630:CDS | 40.0% | |
| ATATCAAGATGCTACTGCAG+AGG | - | chr4_2:14197819-14197838 | Msa0590630:CDS | 40.0% | |
| GGATGAGTATGAAGATGAAG+AGG | - | chr4_2:14197843-14197862 | Msa0590630:CDS | 40.0% | |
| TGAGTATGAAGATGAAGAGG+AGG | - | chr4_2:14197846-14197865 | Msa0590630:CDS | 40.0% | |
| GGTTCGTAATCTCTGTTGTA+AGG | - | chr4_2:14197951-14197970 | Msa0590630:CDS | 40.0% | |
| ! | GTAAGGGGATACTTTTGTTC+CGG | - | chr4_2:14197968-14197987 | Msa0590630:CDS | 40.0% |
| !!! | CCCAGAATTTTGCACCGATT+TGG | + | chr4_2:14195618-14195637 | None:intergenic | 45.0% |
| !! | TCGCTCAAGTTGAAGTTCAG+AGG | + | chr4_2:14195692-14195711 | None:intergenic | 45.0% |
| ! | TTCTGATGGATCTTGAACCG+GGG | - | chr4_2:14195764-14195783 | Msa0590630:CDS | 45.0% |
| GGTCTAAAGATCTGACCGTA+CGG | + | chr4_2:14195814-14195833 | None:intergenic | 45.0% | |
| GTACGGTCAGATCTTTAGAC+CGG | - | chr4_2:14195813-14195832 | Msa0590630:CDS | 45.0% | |
| !! | AGAGTGGTGCTGGTAACAAT+TGG | - | chr4_2:14195854-14195873 | Msa0590630:CDS | 45.0% |
| !! | GAGTGGTGCTGGTAACAATT+GGG | - | chr4_2:14195855-14195874 | Msa0590630:CDS | 45.0% |
| CTGGTAACAATTGGGCGAAA+GGG | - | chr4_2:14195863-14195882 | Msa0590630:CDS | 45.0% | |
| !! | GCGAAAGGGCATTATACTGA+AGG | - | chr4_2:14195877-14195896 | Msa0590630:CDS | 45.0% |
| ATTAGGCATGTCCTGGTTGT+CGG | + | chr4_2:14196352-14196371 | None:intergenic | 45.0% | |
| !! | GTTTATAGAGCGTTTTGCGG+TGG | - | chr4_2:14196395-14196414 | Msa0590630:intron | 45.0% |
| ! | TGGATCTTTTGCCTGCTTTG+TGG | - | chr4_2:14196442-14196461 | Msa0590630:intron | 45.0% |
| TTTGTGGCTGATTGCGCATT+TGG | - | chr4_2:14196458-14196477 | Msa0590630:intron | 45.0% | |
| GTATGTCATTCACTAGGTGG+AGG | - | chr4_2:14196834-14196853 | Msa0590630:intron | 45.0% | |
| AAGTAAGCATCATCCTGTCC+GGG | + | chr4_2:14196911-14196930 | None:intergenic | 45.0% | |
| ! | CTCTGTTTTCCCTTCTCCAA+AGG | - | chr4_2:14196932-14196951 | Msa0590630:intron | 45.0% |
| ! | GTGTCAGAAACCTTTGGAGA+AGG | + | chr4_2:14196945-14196964 | None:intergenic | 45.0% |
| TCCAAAGGTTTCTGACACTG+TGG | - | chr4_2:14196947-14196966 | Msa0590630:intron | 45.0% | |
| ACCACAGTGTCAGAAACCTT+TGG | + | chr4_2:14196951-14196970 | None:intergenic | 45.0% | |
| ACAACATGTGACACCAGACA+TGG | + | chr4_2:14197245-14197264 | None:intergenic | 45.0% | |
| !! | CTGGTGTCACATGTTGTTTG+AGG | - | chr4_2:14197248-14197267 | Msa0590630:intron | 45.0% |
| ! | CACATGTTGTTTGAGGTTCC+CGG | - | chr4_2:14197255-14197274 | Msa0590630:intron | 45.0% |
| ! | ACATGTTGTTTGAGGTTCCC+GGG | - | chr4_2:14197256-14197275 | Msa0590630:intron | 45.0% |
| AGATCAGAGTTTAGCTGACC+CGG | + | chr4_2:14197277-14197296 | None:intergenic | 45.0% | |
| GTCAGCTAAACTCTGATCTG+AGG | - | chr4_2:14197278-14197297 | Msa0590630:intron | 45.0% | |
| AAAAAGTGAAGGCGAGGGAA+TGG | + | chr4_2:14197325-14197344 | None:intergenic | 45.0% | |
| AGCAGCACACATCATGTTCT+TGG | + | chr4_2:14197437-14197456 | None:intergenic | 45.0% | |
| !! | GCTCATTTTGCCTCTGAAGA+TGG | + | chr4_2:14197494-14197513 | None:intergenic | 45.0% |
| ACTCGTCCTACTTTGTCGAA+TGG | - | chr4_2:14197557-14197576 | Msa0590630:intron | 45.0% | |
| CGGAAACTCGACTTCAATTC+AGG | - | chr4_2:14197651-14197670 | Msa0590630:CDS | 45.0% | |
| TGAACTGTTCACTCACCCTT+CGG | + | chr4_2:14197684-14197703 | None:intergenic | 45.0% | |
| CACTGCTATGTTCAGGAGAA+AGG | - | chr4_2:14197702-14197721 | Msa0590630:CDS | 45.0% | |
| GGAGAAAGGCTTTCTTGCAT+TGG | - | chr4_2:14197716-14197735 | Msa0590630:CDS | 45.0% | |
| ! | GCTTTCTTGCATTGGTACAC+TGG | - | chr4_2:14197724-14197743 | Msa0590630:CDS | 45.0% |
| ! | TTGCATTGGTACACTGGTGA+AGG | - | chr4_2:14197730-14197749 | Msa0590630:CDS | 45.0% |
| TTGGTACACTGGTGAAGGAA+TGG | - | chr4_2:14197735-14197754 | Msa0590630:CDS | 45.0% | |
| TGGTGAAGGAATGGATGAGA+TGG | - | chr4_2:14197744-14197763 | Msa0590630:CDS | 45.0% | |
| TGAAGAGGAGGATTATCAGC+AGG | - | chr4_2:14197858-14197877 | Msa0590630:CDS | 45.0% | |
| TATCTGCAACTTCCTGTTGC+CGG | - | chr4_2:14197930-14197949 | Msa0590630:CDS | 45.0% | |
| CACATTCAAGGTGGCCAATG+CGG | - | chr4_2:14195589-14195608 | Msa0590630:three_prime_UTR | 50.0% | |
| GGCCAATGCGGTAACCAAAT+CGG | - | chr4_2:14195601-14195620 | Msa0590630:three_prime_UTR | 50.0% | |
| !! | CACCGATTTGGTTACCGCAT+TGG | + | chr4_2:14195606-14195625 | None:intergenic | 50.0% |
| ! | CGGTGCAAAATTCTGGGAAG+TGG | - | chr4_2:14195621-14195640 | Msa0590630:three_prime_UTR | 50.0% |
| ! | GGTAGGGTCGATTCCATGTT+CGG | + | chr4_2:14195653-14195672 | None:intergenic | 50.0% |
| GAACATGGAATCGACCCTAC+CGG | - | chr4_2:14195652-14195671 | Msa0590630:three_prime_UTR | 50.0% | |
| ACAACGAAGCTAGTTGTGGC+CGG | - | chr4_2:14195725-14195744 | Msa0590630:CDS | 50.0% | |
| AGATCCATCAGAATCGCACG+AGG | + | chr4_2:14195757-14195776 | None:intergenic | 50.0% | |
| ACTATGGATAGTGTCCGGTC+TGG | - | chr4_2:14195787-14195806 | Msa0590630:CDS | 50.0% | |
| GCTGGTAACAATTGGGCGAA+AGG | - | chr4_2:14195862-14195881 | Msa0590630:CDS | 50.0% | |
| ACCAGGACATGCCTAATCCT+AGG | - | chr4_2:14196355-14196374 | Msa0590630:intron | 50.0% | |
| TCCTAGGATTAGGCATGTCC+TGG | + | chr4_2:14196359-14196378 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+AGG | + | chr4_2:14196375-14196394 | None:intergenic | 50.0% | |
| CATTCACTAGGTGGAGGAAC+TGG | - | chr4_2:14196840-14196859 | Msa0590630:intron | 50.0% | |
| TGGAGGAACTGGATCTGGAA+TGG | - | chr4_2:14196851-14196870 | Msa0590630:intron | 50.0% | |
| ! | GGAGGAACTGGATCTGGAAT+GGG | - | chr4_2:14196852-14196871 | Msa0590630:intron | 50.0% |
| GGGTGGTAAGCTTGAGAGTA+CGG | + | chr4_2:14197070-14197089 | None:intergenic | 50.0% | |
| ! | AACTAGCTTACAGCTTGGGG+TGG | + | chr4_2:14197087-14197106 | None:intergenic | 50.0% |
| GATCAGAGTTTAGCTGACCC+GGG | + | chr4_2:14197276-14197295 | None:intergenic | 50.0% | |
| CAAGAGGTTCTCAGCAGTAC+CGG | - | chr4_2:14197371-14197390 | Msa0590630:intron | 50.0% | |
| AAGAGGTTCTCAGCAGTACC+GGG | - | chr4_2:14197372-14197391 | Msa0590630:intron | 50.0% | |
| !! | CACATTTGCTGTGTGAGCTC+CGG | + | chr4_2:14197409-14197428 | None:intergenic | 50.0% |
| GGAGCTCACACAGCAAATGT+GGG | - | chr4_2:14197408-14197427 | Msa0590630:intron | 50.0% | |
| !! | TGAGGTATCGTCCGTGTCTA+GGG | + | chr4_2:14197462-14197481 | None:intergenic | 50.0% |
| TGAAGATGGCTGATGCAGTG+AGG | + | chr4_2:14197480-14197499 | None:intergenic | 50.0% | |
| ACTGCATCAGCCATCTTCAG+AGG | - | chr4_2:14197481-14197500 | Msa0590630:intron | 50.0% | |
| TCCACCAACAGGGTTGAAGA+TGG | - | chr4_2:14197615-14197634 | Msa0590630:CDS | 50.0% | |
| GAAGCCATCTTCAACCCTGT+TGG | + | chr4_2:14197622-14197641 | None:intergenic | 50.0% | |
| GGATGAGATGGAGTTCACTG+AGG | - | chr4_2:14197756-14197775 | Msa0590630:CDS | 50.0% | |
| TGAGATGGAGTTCACTGAGG+CGG | - | chr4_2:14197759-14197778 | Msa0590630:CDS | 50.0% | |
| TCAAGATGCTACTGCAGAGG+AGG | - | chr4_2:14197822-14197841 | Msa0590630:CDS | 50.0% | |
| AGAGATTACGAACCGGCAAC+AGG | + | chr4_2:14197945-14197964 | None:intergenic | 50.0% | |
| ! | GAAGTGGTTTGCGCCGAACA+TGG | - | chr4_2:14195637-14195656 | Msa0590630:three_prime_UTR | 55.0% |
| GAATCGCACGAGGAACGAAC+CGG | + | chr4_2:14195747-14195766 | None:intergenic | 55.0% | |
| CGTTCCTCGTGCGATTCTGA+TGG | - | chr4_2:14195750-14195769 | Msa0590630:CDS | 55.0% | |
| GGATCTTGAACCGGGGACTA+TGG | - | chr4_2:14195771-14195790 | Msa0590630:CDS | 55.0% | |
| CGGACACTATCCATAGTCCC+CGG | + | chr4_2:14195784-14195803 | None:intergenic | 55.0% | |
| CGGGGACTATGGATAGTGTC+CGG | - | chr4_2:14195782-14195801 | Msa0590630:CDS | 55.0% | |
| GTGTTTGGTCAGAGTGGTGC+TGG | - | chr4_2:14195844-14195863 | Msa0590630:CDS | 55.0% | |
| ! | TGTGTTGGTGTCCGACAACC+AGG | - | chr4_2:14196338-14196357 | Msa0590630:CDS | 55.0% |
| GCACGGACACTCCTAGGATT+AGG | + | chr4_2:14196369-14196388 | None:intergenic | 55.0% | |
| TGCGCAATCAGCCACAAAGC+AGG | + | chr4_2:14196456-14196475 | None:intergenic | 55.0% | |
| CTAGGTGGAGGAACTGGATC+TGG | - | chr4_2:14196846-14196865 | Msa0590630:intron | 55.0% | |
| TCAGGGAAGAATACCCGGAC+AGG | - | chr4_2:14196895-14196914 | Msa0590630:intron | 55.0% | |
| !! | GTACCGGGCTTTGAGTGTAC+CGG | - | chr4_2:14197387-14197406 | Msa0590630:intron | 55.0% |
| CGGAGCTCACACAGCAAATG+TGG | - | chr4_2:14197407-14197426 | Msa0590630:intron | 55.0% | |
| ! | TGTGCTGCTGACCCTAGACA+CGG | - | chr4_2:14197448-14197467 | Msa0590630:intron | 55.0% |
| !! | GTGAGGTATCGTCCGTGTCT+AGG | + | chr4_2:14197463-14197482 | None:intergenic | 55.0% |
| GCCATCTTCAACCCTGTTGG+TGG | + | chr4_2:14197619-14197638 | None:intergenic | 55.0% | |
| ATCGACCCTACCGGACGCTA+CGG | - | chr4_2:14195661-14195680 | Msa0590630:three_prime_UTR | 60.0% | |
| TACCACCGTAGCGTCCGGTA+GGG | + | chr4_2:14195669-14195688 | None:intergenic | 60.0% | |
| !! | AGAGGTACCACCGTAGCGTC+CGG | + | chr4_2:14195674-14195693 | None:intergenic | 60.0% |
| AGTGTCCGGTCTGGACCGTA+CGG | - | chr4_2:14195796-14195815 | Msa0590630:CDS | 60.0% | |
| TCTGACCGTACGGTCCAGAC+CGG | + | chr4_2:14195804-14195823 | None:intergenic | 60.0% | |
| GCTCCGGTACACTCAAAGCC+CGG | + | chr4_2:14197393-14197412 | None:intergenic | 60.0% | |
| GTACCACCGTAGCGTCCGGT+AGG | + | chr4_2:14195670-14195689 | None:intergenic | 65.0% | |
| GACCCTACCGGACGCTACGG+TGG | - | chr4_2:14195664-14195683 | Msa0590630:exon | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 14195493 | 14198087 | 14195493 | ID=Msa0590630;Name=Msa0590630 |
| chr4_2 | mRNA | 14195493 | 14198087 | 14195493 | ID=Msa0590630-mRNA-1;Parent=Msa0590630;Name=Msa0590630-mRNA-1;_AED=0.28;_eAED=0.28;_QI=81|1|1|1|1|1|3|190|449 |
| chr4_2 | exon | 14195493 | 14196368 | 14195493 | ID=Msa0590630-mRNA-1:exon:4149;Parent=Msa0590630-mRNA-1 |
| chr4_2 | exon | 14196485 | 14196754 | 14196485 | ID=Msa0590630-mRNA-1:exon:4148;Parent=Msa0590630-mRNA-1 |
| chr4_2 | exon | 14197613 | 14198087 | 14197613 | ID=Msa0590630-mRNA-1:exon:4147;Parent=Msa0590630-mRNA-1 |
| chr4_2 | five_prime_UTR | 14198007 | 14198087 | 14198007 | ID=Msa0590630-mRNA-1:five_prime_utr;Parent=Msa0590630-mRNA-1 |
| chr4_2 | CDS | 14197613 | 14198006 | 14197613 | ID=Msa0590630-mRNA-1:cds;Parent=Msa0590630-mRNA-1 |
| chr4_2 | CDS | 14196485 | 14196754 | 14196485 | ID=Msa0590630-mRNA-1:cds;Parent=Msa0590630-mRNA-1 |
| chr4_2 | CDS | 14195683 | 14196368 | 14195683 | ID=Msa0590630-mRNA-1:cds;Parent=Msa0590630-mRNA-1 |
| chr4_2 | three_prime_UTR | 14195493 | 14195682 | 14195493 | ID=Msa0590630-mRNA-1:three_prime_utr;Parent=Msa0590630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
