Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628590 | Msa0631610 | 0.822093 | 2.848229e-53 | -8.615850e-47 |
| Msa0631610 | Msa0853540 | 0.805750 | 1.148233e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACTAAACCAAAGTTATA+TGG | 0.204982 | 4_3:-14737542 | None:intergenic |
| TTTGAGATTATGAGAGAAAA+AGG | 0.211700 | 4_3:-14735900 | None:intergenic |
| TTCAGATCAACGTTCTTCTA+TGG | 0.273926 | 4_3:+14736287 | Msa0631610:intron |
| TAACTAAACCAAAGTTATAT+GGG | 0.371576 | 4_3:-14737541 | None:intergenic |
| ACTCCATGTTTATGTTTATG+AGG | 0.379800 | 4_3:-14735993 | None:intergenic |
| TTGCAGTTAGTGTGAGATAG+TGG | 0.386743 | 4_3:-14735874 | None:intergenic |
| AAATTGTTGAAGTGGACCTT+TGG | 0.386855 | 4_3:+14738599 | Msa0631610:three_prime_UTR |
| TGAGGAAAGGGGTTTGAAGA+AGG | 0.394504 | 4_3:-14735975 | None:intergenic |
| TCTCTTGATGGTGAGTCTGC+AGG | 0.426499 | 4_3:-14738916 | None:intergenic |
| AAACATAGTAATACAATTGA+TGG | 0.432925 | 4_3:-14738750 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.440589 | 4_3:+14736301 | Msa0631610:CDS |
| TGTTTATGTTTATGAGGAAA+GGG | 0.449748 | 4_3:-14735987 | None:intergenic |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | 4_3:+14736307 | Msa0631610:CDS |
| AAACAATTCAAGGATGTTGA+TGG | 0.456425 | 4_3:+14737566 | Msa0631610:CDS |
| TTGCAGGCCCCATATAACTT+TGG | 0.456758 | 4_3:+14737533 | Msa0631610:intron |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | 4_3:+14736338 | Msa0631610:CDS |
| AAGTAAACGAAGAGAGAAGA+GGG | 0.480386 | 4_3:-14735923 | None:intergenic |
| TTTAGTTAAGAAACAATTCA+AGG | 0.484226 | 4_3:+14737556 | Msa0631610:CDS |
| TTTCATCATTTCTATATGAT+GGG | 0.484850 | 4_3:+14738715 | Msa0631610:three_prime_UTR |
| ATGTTTATGTTTATGAGGAA+AGG | 0.494659 | 4_3:-14735988 | None:intergenic |
| TACACATCAAATTGTTGAAG+TGG | 0.494862 | 4_3:+14738591 | Msa0631610:three_prime_UTR |
| TCCACGGTACCTTTATGAAA+AGG | 0.499324 | 4_3:+14737621 | Msa0631610:three_prime_UTR |
| ATGGATAATATGTGTGCTCT+AGG | 0.502690 | 4_3:+14737594 | Msa0631610:exon |
| CAAACATCATAGTCAGCATA+GGG | 0.504424 | 4_3:+14738544 | Msa0631610:three_prime_UTR |
| TGAAATTCTTTGATAGCAAG+TGG | 0.524083 | 4_3:+14738645 | Msa0631610:three_prime_UTR |
| CTCTTGATGGTGAGTCTGCA+GGG | 0.529218 | 4_3:-14738915 | None:intergenic |
| ACTATGTTTATCCTCACTGT+TGG | 0.532305 | 4_3:+14738764 | Msa0631610:three_prime_UTR |
| ATAATTTGCATCTTTACTTG+AGG | 0.533057 | 4_3:+14738855 | Msa0631610:three_prime_UTR |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | 4_3:+14736308 | Msa0631610:CDS |
| TCAAATCTGGTGTTGTAGAT+CGG | 0.543928 | 4_3:-14736089 | None:intergenic |
| AAGGATGTTGATGGTACAGA+TGG | 0.544451 | 4_3:+14737575 | Msa0631610:CDS |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | 4_3:+14736323 | Msa0631610:CDS |
| TCAAACATCATAGTCAGCAT+AGG | 0.556841 | 4_3:+14738543 | Msa0631610:three_prime_UTR |
| GTTTGGTATGTGCAGGTATG+TGG | 0.558241 | 4_3:+14738506 | Msa0631610:intron |
| CAGGTATGTGGCATGTGCGT+TGG | 0.570201 | 4_3:+14738518 | Msa0631610:intron |
| TGCAGTTAGTGTGAGATAGT+GGG | 0.577153 | 4_3:-14735873 | None:intergenic |
| AAAGTAAACGAAGAGAGAAG+AGG | 0.579543 | 4_3:-14735924 | None:intergenic |
| TGAGTCTGCAGGGATAAAGT+AGG | 0.594859 | 4_3:-14738905 | None:intergenic |
| AACTAAACCAAAGTTATATG+GGG | 0.603697 | 4_3:-14737540 | None:intergenic |
| GTTTATGTTTATGAGGAAAG+GGG | 0.609541 | 4_3:-14735986 | None:intergenic |
| TGTAGATCGGTGTTGTACAA+TGG | 0.627928 | 4_3:-14736076 | None:intergenic |
| CTACATGCTAAGCTGTCCAA+AGG | 0.628150 | 4_3:-14738615 | None:intergenic |
| ACAAATATAATCAATAGATG+TGG | 0.629934 | 4_3:+14738799 | Msa0631610:three_prime_UTR |
| TTTCCTCATAAACATAAACA+TGG | 0.638621 | 4_3:+14735990 | Msa0631610:exon |
| GTGTGCTCTAGGAATATCCA+CGG | 0.670350 | 4_3:+14737605 | Msa0631610:three_prime_UTR |
| AGCATAGGGGACTTAATATG+CGG | 0.675415 | 4_3:+14738558 | Msa0631610:three_prime_UTR |
| ATAAAGAAGAATGAAGAACT+CGG | 0.678421 | 4_3:-14736029 | None:intergenic |
| TTTCAACTTAACCAACAGTG+AGG | 0.718256 | 4_3:-14738775 | None:intergenic |
| AAACATCATAGTCAGCATAG+GGG | 0.726241 | 4_3:+14738545 | Msa0631610:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATAGATAAAATATAT+TGG | - | chr4_3:14738206-14738225 | None:intergenic | 10.0% |
| !!! | TTATTTTTGATCAGTTTTTT+TGG | + | chr4_3:14736048-14736067 | Msa0631610:CDS | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | - | chr4_3:14736496-14736515 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+TGG | + | chr4_3:14736895-14736914 | Msa0631610:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAT+GGG | + | chr4_3:14736896-14736915 | Msa0631610:intron | 15.0% |
| !! | AATTGAATGTATCTAAAAAA+TGG | + | chr4_3:14737905-14737924 | Msa0631610:intron | 15.0% |
| !!! | TATATTTTATCTATCAATTG+TGG | + | chr4_3:14738207-14738226 | Msa0631610:intron | 15.0% |
| !! | CTAAAGATTGAAAAAATAGA+GGG | - | chr4_3:14736246-14736265 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | - | chr4_3:14736381-14736400 | None:intergenic | 20.0% |
| !! | ATGAGTAAAAAAACGAAATT+TGG | - | chr4_3:14736387-14736406 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | - | chr4_3:14736485-14736504 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | + | chr4_3:14736485-14736504 | Msa0631610:intron | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | - | chr4_3:14736666-14736685 | None:intergenic | 20.0% |
| !!! | CTATATTAACATTTTTTAGC+TGG | - | chr4_3:14736753-14736772 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTATG+GGG | + | chr4_3:14736897-14736916 | Msa0631610:intron | 20.0% |
| !! | TGAAATTTGCAAACATTAAT+TGG | - | chr4_3:14737064-14737083 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAAACTACACAAT+TGG | - | chr4_3:14737106-14737125 | None:intergenic | 20.0% |
| !! | TAACTAAACCAAAGTTATAT+GGG | - | chr4_3:14737544-14737563 | None:intergenic | 20.0% |
| !! | TTAACTAAACCAAAGTTATA+TGG | - | chr4_3:14737545-14737564 | None:intergenic | 20.0% |
| !! | TTTAGTTAAGAAACAATTCA+AGG | + | chr4_3:14737556-14737575 | Msa0631610:CDS | 20.0% |
| !! | TAATGACTAAAAGATAGAAA+AGG | - | chr4_3:14737651-14737670 | None:intergenic | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr4_3:14737844-14737863 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTAGTGAT+CGG | + | chr4_3:14737929-14737948 | Msa0631610:intron | 20.0% |
| !!! | ATTTTTATATTCCTCAAACA+CGG | + | chr4_3:14738040-14738059 | Msa0631610:intron | 20.0% |
| !!! | TTTTCATCATTTCTATATGA+TGG | + | chr4_3:14738714-14738733 | Msa0631610:three_prime_UTR | 20.0% |
| !! | TTTCATCATTTCTATATGAT+GGG | + | chr4_3:14738715-14738734 | Msa0631610:three_prime_UTR | 20.0% |
| !! | AAACATAGTAATACAATTGA+TGG | - | chr4_3:14738753-14738772 | None:intergenic | 20.0% |
| !! | ACAAATATAATCAATAGATG+TGG | + | chr4_3:14738799-14738818 | Msa0631610:three_prime_UTR | 20.0% |
| !! | TTTGAGATTATGAGAGAAAA+AGG | - | chr4_3:14735903-14735922 | None:intergenic | 25.0% |
| ! | TGTTTATGTTTATGAGGAAA+GGG | - | chr4_3:14735990-14736009 | None:intergenic | 25.0% |
| ! | ATGTTTATGTTTATGAGGAA+AGG | - | chr4_3:14735991-14736010 | None:intergenic | 25.0% |
| ! | TTTCCTCATAAACATAAACA+TGG | + | chr4_3:14735990-14736009 | Msa0631610:exon | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | - | chr4_3:14736032-14736051 | None:intergenic | 25.0% |
| !!! | AACACCAGATTTGATTTTTA+AGG | + | chr4_3:14736098-14736117 | Msa0631610:CDS | 25.0% |
| !!! | ACACCAGATTTGATTTTTAA+GGG | + | chr4_3:14736099-14736118 | Msa0631610:CDS | 25.0% |
| ! | TTACCCTTAAAAATCAAATC+TGG | - | chr4_3:14736105-14736124 | None:intergenic | 25.0% |
| ! | GCTAAAGATTGAAAAAATAG+AGG | - | chr4_3:14736247-14736266 | None:intergenic | 25.0% |
| ! | TCAAATTTCTACAAATGATG+AGG | - | chr4_3:14736619-14736638 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | + | chr4_3:14736618-14736637 | Msa0631610:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | - | chr4_3:14736667-14736686 | None:intergenic | 25.0% |
| ! | AACAATGAAGCAACTAAAAA+AGG | + | chr4_3:14736701-14736720 | Msa0631610:intron | 25.0% |
| ! | AGCAACTAAAAAAGGATTAT+AGG | + | chr4_3:14736709-14736728 | Msa0631610:intron | 25.0% |
| ! | TAAAAAAGGATTATAGGTAG+AGG | + | chr4_3:14736715-14736734 | Msa0631610:intron | 25.0% |
| !!! | TTTTGGAATAAGTTCATACA+AGG | + | chr4_3:14736927-14736946 | Msa0631610:intron | 25.0% |
| ! | AATTTGCAAACATTAATTGG+TGG | - | chr4_3:14737061-14737080 | None:intergenic | 25.0% |
| ! | AGTTGTTTAATCTGAATGTT+GGG | + | chr4_3:14737426-14737445 | Msa0631610:intron | 25.0% |
| ! | TAGAGTGTATAAATTAAAGC+TGG | + | chr4_3:14737462-14737481 | Msa0631610:intron | 25.0% |
| ! | AACTAAACCAAAGTTATATG+GGG | - | chr4_3:14737543-14737562 | None:intergenic | 25.0% |
| !! | GTTTGTTTACGTAATTTTCA+AGG | - | chr4_3:14737698-14737717 | None:intergenic | 25.0% |
| ! | ATAAATGAGCAATCACAAAA+TGG | - | chr4_3:14737785-14737804 | None:intergenic | 25.0% |
| !! | TTTTTGCTTAAATTAGTGAC+CGG | - | chr4_3:14737820-14737839 | None:intergenic | 25.0% |
| !! | TTTTTATATTCCTCAAACAC+GGG | + | chr4_3:14738041-14738060 | Msa0631610:intron | 25.0% |
| ! | GGAGGTTATATGTATTTAAT+TGG | + | chr4_3:14738062-14738081 | Msa0631610:intron | 25.0% |
| ! | ATCAAATACCTATAGTTTGA+GGG | - | chr4_3:14738105-14738124 | None:intergenic | 25.0% |
| ! | AATCAAATACCTATAGTTTG+AGG | - | chr4_3:14738106-14738125 | None:intergenic | 25.0% |
| ! | TATGATATACACACACATAT+TGG | + | chr4_3:14738163-14738182 | Msa0631610:intron | 25.0% |
| ! | TTTATCTATCAATTGTGGTA+AGG | + | chr4_3:14738212-14738231 | Msa0631610:intron | 25.0% |
| !! | AATTGTGATAACGAAAAATG+AGG | + | chr4_3:14738299-14738318 | Msa0631610:intron | 25.0% |
| !!! | ATTCAATTTTAACCAAGAGA+GGG | - | chr4_3:14738415-14738434 | None:intergenic | 25.0% |
| ! | GATTTGTCAAGAAAAATAGT+TGG | + | chr4_3:14738453-14738472 | Msa0631610:intron | 25.0% |
| !!! | ACAATTTGTTCTAAGATGTT+TGG | + | chr4_3:14738489-14738508 | Msa0631610:intron | 25.0% |
| !! | ATAATTTGCATCTTTACTTG+AGG | + | chr4_3:14738855-14738874 | Msa0631610:three_prime_UTR | 25.0% |
| GAGAAGAAGAAACAATGAAA+GGG | - | chr4_3:14735956-14735975 | None:intergenic | 30.0% | |
| GTTTATGTTTATGAGGAAAG+GGG | - | chr4_3:14735989-14736008 | None:intergenic | 30.0% | |
| ACTCCATGTTTATGTTTATG+AGG | - | chr4_3:14735996-14736015 | None:intergenic | 30.0% | |
| ATTCCTGTCACAAAATAACT+TGG | - | chr4_3:14736581-14736600 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACAGGAATTCAA+TGG | + | chr4_3:14736585-14736604 | Msa0631610:intron | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | - | chr4_3:14736844-14736863 | None:intergenic | 30.0% |
| TTTCATGATATAGCTGTTAG+AGG | + | chr4_3:14737079-14737098 | Msa0631610:intron | 30.0% | |
| ! | GAAACTTTTGATGCTAGAAA+AGG | - | chr4_3:14737256-14737275 | None:intergenic | 30.0% |
| GAGTTGTTTAATCTGAATGT+TGG | + | chr4_3:14737425-14737444 | Msa0631610:intron | 30.0% | |
| AAACAATTCAAGGATGTTGA+TGG | + | chr4_3:14737566-14737585 | Msa0631610:CDS | 30.0% | |
| !!! | AAAGGAGTACCTTTTCATAA+AGG | - | chr4_3:14737633-14737652 | None:intergenic | 30.0% |
| CATTTATATTATACACCCTC+CGG | + | chr4_3:14737798-14737817 | Msa0631610:intron | 30.0% | |
| CTTTAAATCCCTCAAACTAT+AGG | + | chr4_3:14738094-14738113 | Msa0631610:intron | 30.0% | |
| TAACGAAAAATGAGGTTTGA+CGG | + | chr4_3:14738307-14738326 | Msa0631610:intron | 30.0% | |
| !! | CATTCAATTTTAACCAAGAG+AGG | - | chr4_3:14738416-14738435 | None:intergenic | 30.0% |
| TACACATCAAATTGTTGAAG+TGG | + | chr4_3:14738591-14738610 | Msa0631610:three_prime_UTR | 30.0% | |
| ! | TGAAATTCTTTGATAGCAAG+TGG | + | chr4_3:14738645-14738664 | Msa0631610:three_prime_UTR | 30.0% |
| AAGTAAACGAAGAGAGAAGA+GGG | - | chr4_3:14735926-14735945 | None:intergenic | 35.0% | |
| AAAGTAAACGAAGAGAGAAG+AGG | - | chr4_3:14735927-14735946 | None:intergenic | 35.0% | |
| GGAGAAGAAGAAACAATGAA+AGG | - | chr4_3:14735957-14735976 | None:intergenic | 35.0% | |
| !! | TCAAATCTGGTGTTGTAGAT+CGG | - | chr4_3:14736092-14736111 | None:intergenic | 35.0% |
| TTCAGATCAACGTTCTTCTA+TGG | + | chr4_3:14736287-14736306 | Msa0631610:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | + | chr4_3:14736301-14736320 | Msa0631610:CDS | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | - | chr4_3:14736475-14736494 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+AGG | + | chr4_3:14736575-14736594 | Msa0631610:intron | 35.0% |
| !!! | TTTTTAGCTGGCATAAACCA+AGG | - | chr4_3:14736741-14736760 | None:intergenic | 35.0% |
| ! | TTCTATGGGGCTTAAGTTTT+TGG | + | chr4_3:14736910-14736929 | Msa0631610:intron | 35.0% |
| ! | GTTGTTGTTGAAACTCACAT+AGG | - | chr4_3:14737143-14737162 | None:intergenic | 35.0% |
| CTCTAGATCCTAATTGAATG+AGG | + | chr4_3:14737221-14737240 | Msa0631610:intron | 35.0% | |
| !! | GACAAGAAACCATTGGTTTA+TGG | + | chr4_3:14737338-14737357 | Msa0631610:intron | 35.0% |
| !! | ACCATTGGTTTATGGCTTAA+TGG | + | chr4_3:14737346-14737365 | Msa0631610:intron | 35.0% |
| TCCATTAAGCCATAAACCAA+TGG | - | chr4_3:14737350-14737369 | None:intergenic | 35.0% | |
| CAAATAAGAGAGCAATGTCA+AGG | - | chr4_3:14737516-14737535 | None:intergenic | 35.0% | |
| ATGGATAATATGTGTGCTCT+AGG | + | chr4_3:14737594-14737613 | Msa0631610:exon | 35.0% | |
| ! | AAAACATCGCAGGTATTGTT+TGG | - | chr4_3:14737755-14737774 | None:intergenic | 35.0% |
| TTGCTTATATTAGTGATCGG+AGG | + | chr4_3:14737932-14737951 | Msa0631610:intron | 35.0% | |
| TGCTTATATTAGTGATCGGA+GGG | + | chr4_3:14737933-14737952 | Msa0631610:intron | 35.0% | |
| AACGAAAAATGAGGTTTGAC+GGG | + | chr4_3:14738308-14738327 | Msa0631610:intron | 35.0% | |
| ! | GCTGCTATTGTTGCTTATTA+AGG | + | chr4_3:14738341-14738360 | Msa0631610:intron | 35.0% |
| TTCCAATTCCAAATTCTTCC+TGG | - | chr4_3:14738370-14738389 | None:intergenic | 35.0% | |
| ATATCAATTTCTCCCTCTCT+TGG | + | chr4_3:14738400-14738419 | Msa0631610:intron | 35.0% | |
| TCAAACATCATAGTCAGCAT+AGG | + | chr4_3:14738543-14738562 | Msa0631610:three_prime_UTR | 35.0% | |
| CAAACATCATAGTCAGCATA+GGG | + | chr4_3:14738544-14738563 | Msa0631610:three_prime_UTR | 35.0% | |
| AAACATCATAGTCAGCATAG+GGG | + | chr4_3:14738545-14738564 | Msa0631610:three_prime_UTR | 35.0% | |
| AAATTGTTGAAGTGGACCTT+TGG | + | chr4_3:14738599-14738618 | Msa0631610:three_prime_UTR | 35.0% | |
| ACTATGTTTATCCTCACTGT+TGG | + | chr4_3:14738764-14738783 | Msa0631610:three_prime_UTR | 35.0% | |
| TTTCAACTTAACCAACAGTG+AGG | - | chr4_3:14738778-14738797 | None:intergenic | 35.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | - | chr4_3:14735877-14735896 | None:intergenic | 40.0% | |
| !! | TGTAGATCGGTGTTGTACAA+TGG | - | chr4_3:14736079-14736098 | None:intergenic | 40.0% |
| GAGAGATAAGCTATAACCAG+TGG | - | chr4_3:14736224-14736243 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | + | chr4_3:14736307-14736326 | Msa0631610:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | + | chr4_3:14736308-14736327 | Msa0631610:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | + | chr4_3:14736323-14736342 | Msa0631610:CDS | 40.0% | |
| ACAGAACAGGTATCAGAAGT+AGG | + | chr4_3:14736351-14736370 | Msa0631610:intron | 40.0% | |
| ! | TTTTGCAGCCTCAACATGTA+TGG | + | chr4_3:14736794-14736813 | Msa0631610:intron | 40.0% |
| TGGATGGGCAAATTAACATG+TGG | + | chr4_3:14736814-14736833 | Msa0631610:intron | 40.0% | |
| TGGGCAAATTAACATGTGGT+TGG | + | chr4_3:14736818-14736837 | Msa0631610:intron | 40.0% | |
| CTGAGAGAAATGAAGACAGT+GGG | - | chr4_3:14737017-14737036 | None:intergenic | 40.0% | |
| ACTGAGAGAAATGAAGACAG+TGG | - | chr4_3:14737018-14737037 | None:intergenic | 40.0% | |
| GATCCTAATTGAATGAGGTC+AGG | + | chr4_3:14737226-14737245 | Msa0631610:intron | 40.0% | |
| TGACCTGACCTCATTCAATT+AGG | - | chr4_3:14737232-14737251 | None:intergenic | 40.0% | |
| CAATGGTTTCTTGTCATGCT+TGG | - | chr4_3:14737333-14737352 | None:intergenic | 40.0% | |
| CAAGCATGACAAGAAACCAT+TGG | + | chr4_3:14737331-14737350 | Msa0631610:intron | 40.0% | |
| !! | CTAGCATCAAAAGTGTCATG+TGG | + | chr4_3:14737387-14737406 | Msa0631610:intron | 40.0% |
| ! | GACATTGCTCTCTTATTTGC+AGG | + | chr4_3:14737517-14737536 | Msa0631610:intron | 40.0% |
| !! | AAGGATGTTGATGGTACAGA+TGG | + | chr4_3:14737575-14737594 | Msa0631610:CDS | 40.0% |
| TCCACGGTACCTTTATGAAA+AGG | + | chr4_3:14737621-14737640 | Msa0631610:three_prime_UTR | 40.0% | |
| !!! | ACCTTTTCATAAAGGTACCG+TGG | - | chr4_3:14737625-14737644 | None:intergenic | 40.0% |
| TGGAAATGAGAAAACATCGC+AGG | - | chr4_3:14737765-14737784 | None:intergenic | 40.0% | |
| TGCTTAAATTAGTGACCGGA+GGG | - | chr4_3:14737816-14737835 | None:intergenic | 40.0% | |
| TTGCTTAAATTAGTGACCGG+AGG | - | chr4_3:14737817-14737836 | None:intergenic | 40.0% | |
| TTATATTCCTCAAACACGGG+AGG | + | chr4_3:14738044-14738063 | Msa0631610:intron | 40.0% | |
| ! | TGCCAGGAAGAATTTGGAAT+TGG | + | chr4_3:14738365-14738384 | Msa0631610:intron | 40.0% |
| CTAAGATGTTTGGTATGTGC+AGG | + | chr4_3:14738499-14738518 | Msa0631610:intron | 40.0% | |
| AGCATAGGGGACTTAATATG+CGG | + | chr4_3:14738558-14738577 | Msa0631610:three_prime_UTR | 40.0% | |
| TGAGGAAAGGGGTTTGAAGA+AGG | - | chr4_3:14735978-14735997 | None:intergenic | 45.0% | |
| CTATAACCAGTGGAACACGA+TGG | - | chr4_3:14736214-14736233 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTC+TGG | + | chr4_3:14736420-14736439 | Msa0631610:intron | 45.0% | |
| AACCAGAGAGAGTAAGAGAG+TGG | - | chr4_3:14736425-14736444 | None:intergenic | 45.0% | |
| !! | TCTCTGGTTTGTTGTTGCTG+TGG | + | chr4_3:14736436-14736455 | Msa0631610:intron | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | + | chr4_3:14736441-14736460 | Msa0631610:intron | 45.0% |
| AGGATTATAGGTAGAGGCCT+TGG | + | chr4_3:14736721-14736740 | Msa0631610:intron | 45.0% | |
| CAGCCTCAACATGTATGGAT+GGG | + | chr4_3:14736799-14736818 | Msa0631610:intron | 45.0% | |
| TTGCCCATCCATACATGTTG+AGG | - | chr4_3:14736805-14736824 | None:intergenic | 45.0% | |
| TTGCAGGCCCCATATAACTT+TGG | + | chr4_3:14737533-14737552 | Msa0631610:intron | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | + | chr4_3:14737605-14737624 | Msa0631610:three_prime_UTR | 45.0% |
| CATATAACCTCCCGTGTTTG+AGG | - | chr4_3:14738054-14738073 | None:intergenic | 45.0% | |
| ! | TGTTGCTTATTAAGGCTGCC+AGG | + | chr4_3:14738349-14738368 | Msa0631610:intron | 45.0% |
| TAAGGCTGCCAGGAAGAATT+TGG | + | chr4_3:14738359-14738378 | Msa0631610:intron | 45.0% | |
| GTTTGGTATGTGCAGGTATG+TGG | + | chr4_3:14738506-14738525 | Msa0631610:intron | 45.0% | |
| CTACATGCTAAGCTGTCCAA+AGG | - | chr4_3:14738618-14738637 | None:intergenic | 45.0% | |
| ! | GTTGGTTCCAATCGGAGAGA+GGG | - | chr4_3:14736182-14736201 | None:intergenic | 50.0% |
| ! | AGTTGGTTCCAATCGGAGAG+AGG | - | chr4_3:14736183-14736202 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | - | chr4_3:14736211-14736230 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | + | chr4_3:14736338-14736357 | Msa0631610:CDS | 50.0% | |
| GCAGCCTCAACATGTATGGA+TGG | + | chr4_3:14736798-14736817 | Msa0631610:intron | 50.0% | |
| TATCCCTCCCTCTCTCCGAT+TGG | + | chr4_3:14736172-14736191 | Msa0631610:intron | 55.0% | |
| GTTCCAATCGGAGAGAGGGA+GGG | - | chr4_3:14736178-14736197 | None:intergenic | 55.0% | |
| CAGGTATGTGGCATGTGCGT+TGG | + | chr4_3:14738518-14738537 | Msa0631610:intron | 55.0% | |
| GGTTCCAATCGGAGAGAGGG+AGG | - | chr4_3:14736179-14736198 | None:intergenic | 60.0% | |
| !! | GGCGGCGAGTTGGTTCCAAT+CGG | - | chr4_3:14736190-14736209 | None:intergenic | 60.0% |
| ! | CCAGTGGAACACGATGGTGG+CGG | - | chr4_3:14736208-14736227 | None:intergenic | 60.0% |
| !! | ACACGATGGTGGCGGCGAGT+TGG | - | chr4_3:14736200-14736219 | None:intergenic | 65.0% |
| CCGCCACCATCGTGTTCCAC+TGG | + | chr4_3:14736205-14736224 | Msa0631610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 14735874 | 14738926 | 14735874 | ID=Msa0631610;Name=Msa0631610 |
| chr4_3 | mRNA | 14735874 | 14738926 | 14735874 | ID=Msa0631610-mRNA-1;Parent=Msa0631610;Name=Msa0631610-mRNA-1;_AED=0.34;_eAED=0.34;_QI=115|0.75|1|1|0.5|0.2|5|447|80 |
| chr4_3 | exon | 14735874 | 14735943 | 14735874 | ID=Msa0631610-mRNA-1:exon:4144;Parent=Msa0631610-mRNA-1 |
| chr4_3 | exon | 14735964 | 14736120 | 14735964 | ID=Msa0631610-mRNA-1:exon:4145;Parent=Msa0631610-mRNA-1 |
| chr4_3 | exon | 14736292 | 14736359 | 14736292 | ID=Msa0631610-mRNA-1:exon:4146;Parent=Msa0631610-mRNA-1 |
| chr4_3 | exon | 14737539 | 14737642 | 14737539 | ID=Msa0631610-mRNA-1:exon:4147;Parent=Msa0631610-mRNA-1 |
| chr4_3 | exon | 14738521 | 14738926 | 14738521 | ID=Msa0631610-mRNA-1:exon:4148;Parent=Msa0631610-mRNA-1 |
| chr4_3 | five_prime_UTR | 14735874 | 14735943 | 14735874 | ID=Msa0631610-mRNA-1:five_prime_utr;Parent=Msa0631610-mRNA-1 |
| chr4_3 | five_prime_UTR | 14735964 | 14736008 | 14735964 | ID=Msa0631610-mRNA-1:five_prime_utr;Parent=Msa0631610-mRNA-1 |
| chr4_3 | CDS | 14736009 | 14736120 | 14736009 | ID=Msa0631610-mRNA-1:cds;Parent=Msa0631610-mRNA-1 |
| chr4_3 | CDS | 14736292 | 14736359 | 14736292 | ID=Msa0631610-mRNA-1:cds;Parent=Msa0631610-mRNA-1 |
| chr4_3 | CDS | 14737539 | 14737601 | 14737539 | ID=Msa0631610-mRNA-1:cds;Parent=Msa0631610-mRNA-1 |
| chr4_3 | three_prime_UTR | 14737602 | 14737642 | 14737602 | ID=Msa0631610-mRNA-1:three_prime_utr;Parent=Msa0631610-mRNA-1 |
| chr4_3 | three_prime_UTR | 14738521 | 14738926 | 14738521 | ID=Msa0631610-mRNA-1:three_prime_utr;Parent=Msa0631610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
