Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0628590 | Msa0631610 | 0.822093 | 2.848229e-53 | -8.615850e-47 |
| Msa0628590 | Msa1267030 | 0.907445 | 5.028100e-81 | -8.615850e-47 |
| Msa0139390 | Msa0628590 | 0.817723 | 2.844339e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGATTATGAGAGAAAA+AGG | 0.211700 | 4_3:-9251560 | None:intergenic |
| TGCCATGAATAGAGAACTTT+TGG | 0.267971 | 4_3:-9254683 | None:intergenic |
| TTCAGATCAACGTTCTTCTA+TGG | 0.273926 | 4_3:+9251953 | Msa0628590:intron |
| TGCAATTGCTACAAATAATA+TGG | 0.304167 | 4_3:+9254875 | Msa0628590:three_prime_UTR |
| CATGGCAAAGACCTCATAAT+TGG | 0.358933 | 4_3:+9254699 | Msa0628590:exon |
| TGTTTATGTTTATGTTTATG+AGG | 0.374300 | 4_3:-9251653 | None:intergenic |
| TTGCAGTTAGTGTGAGATAG+TGG | 0.386743 | 4_3:-9251534 | None:intergenic |
| TACCAAAAGTTCTCTATTCA+TGG | 0.391552 | 4_3:+9254681 | Msa0628590:CDS |
| CCACGATGGGTTGAAATTTG+TGG | 0.393939 | 4_3:-9254656 | None:intergenic |
| TGAGGAAAGGGGTTTGAAGA+AGG | 0.394504 | 4_3:-9251635 | None:intergenic |
| AATTTGACATTTACATTGGA+GGG | 0.418818 | 4_3:-9254741 | None:intergenic |
| TGTTTATGTTTATGAGGAAA+GGG | 0.439878 | 4_3:-9251647 | None:intergenic |
| CTTCTATGGATAGACAAATC+TGG | 0.440589 | 4_3:+9251967 | Msa0628590:exon |
| AACCACTCTCTTACTCTCTC+TGG | 0.444798 | 4_3:+9252086 | Msa0628590:CDS |
| TGGATAGACAAATCTGGCTA+TGG | 0.454461 | 4_3:+9251973 | Msa0628590:CDS |
| TTCAAATTTGACATTTACAT+TGG | 0.455482 | 4_3:-9254745 | None:intergenic |
| ACATTGAGTTGATCATAAAA+AGG | 0.463682 | 4_3:-9254837 | None:intergenic |
| GATGAAGGAACGCACAGAAC+AGG | 0.465124 | 4_3:+9252004 | Msa0628590:CDS |
| GGTTTGTTGTTGCTGTGGTT+AGG | 0.467574 | 4_3:+9252107 | Msa0628590:CDS |
| AAGTAAACGAAGAGAGAAGA+GGG | 0.480386 | 4_3:-9251583 | None:intergenic |
| ATGTTTATGTTTATGAGGAA+AGG | 0.484789 | 4_3:-9251648 | None:intergenic |
| TAGAGAAGACATGAATAAGC+TGG | 0.500230 | 4_3:-9254780 | None:intergenic |
| AAATTTGACATTTACATTGG+AGG | 0.512690 | 4_3:-9254742 | None:intergenic |
| GGATAGACAAATCTGGCTAT+GGG | 0.538535 | 4_3:+9251974 | Msa0628590:CDS |
| TCAAATCTGGTGTTGTAGAT+CGG | 0.543928 | 4_3:-9251755 | None:intergenic |
| TCTCTGGTTTGTTGTTGCTG+TGG | 0.545340 | 4_3:+9252102 | Msa0628590:CDS |
| GCTATGGGAAAGAATGATGA+AGG | 0.551874 | 4_3:+9251989 | Msa0628590:CDS |
| AAGAATCTCGACCAATTATG+AGG | 0.554517 | 4_3:-9254710 | None:intergenic |
| GTTTATGTTTATGAGGAAAG+GGG | 0.570140 | 4_3:-9251646 | None:intergenic |
| TGCAGTTAGTGTGAGATAGT+GGG | 0.577153 | 4_3:-9251533 | None:intergenic |
| AAAGTAAACGAAGAGAGAAG+AGG | 0.579543 | 4_3:-9251584 | None:intergenic |
| TGTAGATCGGTGTTGTACAA+TGG | 0.627928 | 4_3:-9251742 | None:intergenic |
| AACCAGAGAGAGTAAGAGAG+TGG | 0.637594 | 4_3:-9252088 | None:intergenic |
| CCACAAATTTCAACCCATCG+TGG | 0.665291 | 4_3:+9254656 | Msa0628590:CDS |
| ATAAAGAAGAATGAAGAACT+CGG | 0.678421 | 4_3:-9251695 | None:intergenic |
| AATTGCTACAAATAATATGG+TGG | 0.695190 | 4_3:+9254878 | Msa0628590:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATAGATAAAATATAT+TGG | - | chr4_3:9253868-9253887 | None:intergenic | 10.0% |
| !!! | TTATTTTTGATCAGTTTTTT+TGG | + | chr4_3:9251714-9251733 | Msa0628590:five_prime_UTR | 15.0% |
| !!! | CAAAAATACCTTTTAAAAAA+TGG | - | chr4_3:9252162-9252181 | None:intergenic | 15.0% |
| !! | AATTCTTTAAATGAATTCTA+TGG | + | chr4_3:9252560-9252579 | Msa0628590:intron | 15.0% |
| !! | ATTCTTTAAATGAATTCTAT+GGG | + | chr4_3:9252561-9252580 | Msa0628590:intron | 15.0% |
| !! | TAATGAATAAAAGATAGAAA+AGG | - | chr4_3:9253313-9253332 | None:intergenic | 15.0% |
| !! | AATTGAATGTATCTAAAAAA+TGG | + | chr4_3:9253567-9253586 | Msa0628590:intron | 15.0% |
| !!! | TATATTTTATCTATCAATTG+TGG | + | chr4_3:9253869-9253888 | Msa0628590:intron | 15.0% |
| !! | TGTTTATGTTTATGTTTATG+AGG | - | chr4_3:9251656-9251675 | None:intergenic | 20.0% |
| !! | CTAAAGATTGAAAAAATAGA+GGG | - | chr4_3:9251912-9251931 | None:intergenic | 20.0% |
| !! | AAAAAAACGAAATTTGGATT+TGG | - | chr4_3:9252047-9252066 | None:intergenic | 20.0% |
| !! | ATGAGTAAAAAAACGAAATT+TGG | - | chr4_3:9252053-9252072 | None:intergenic | 20.0% |
| !!! | TTTAAAAAATGGCTTTGTAA+TGG | - | chr4_3:9252151-9252170 | None:intergenic | 20.0% |
| !!! | TTACAAAGCCATTTTTTAAA+AGG | + | chr4_3:9252151-9252170 | Msa0628590:CDS | 20.0% |
| !! | ACATTTAATGTTAGAACAAA+GGG | - | chr4_3:9252331-9252350 | None:intergenic | 20.0% |
| !!! | CTATATTAACATTTTTTAGC+TGG | - | chr4_3:9252418-9252437 | None:intergenic | 20.0% |
| !! | TTCTTTAAATGAATTCTATG+GGG | + | chr4_3:9252562-9252581 | Msa0628590:intron | 20.0% |
| !! | TGAAATTTGCAAACATTAAT+TGG | - | chr4_3:9252729-9252748 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAAACTACACAAT+TGG | - | chr4_3:9252771-9252790 | None:intergenic | 20.0% |
| !! | TAACTAAACCAAAGTTATAT+GGG | - | chr4_3:9253206-9253225 | None:intergenic | 20.0% |
| !! | TTAACTAAACCAAAGTTATA+TGG | - | chr4_3:9253207-9253226 | None:intergenic | 20.0% |
| !! | TTTAGTTAAGAAACAATTCA+AGG | + | chr4_3:9253218-9253237 | Msa0628590:intron | 20.0% |
| !! | AATTGAATGTATCTAAAAAG+TGG | - | chr4_3:9253506-9253525 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTAGTGAT+CGG | + | chr4_3:9253591-9253610 | Msa0628590:intron | 20.0% |
| !!! | ATTTTTATATTCCTCAAACA+CGG | + | chr4_3:9253702-9253721 | Msa0628590:intron | 20.0% |
| !!! | TTTTCATCATTTCTATATGA+TGG | + | chr4_3:9254376-9254395 | Msa0628590:intron | 20.0% |
| !! | TTTCATCATTTCTATATGAT+GGG | + | chr4_3:9254377-9254396 | Msa0628590:intron | 20.0% |
| !! | AAACATAGTAATACAATTGA+TGG | - | chr4_3:9254415-9254434 | None:intergenic | 20.0% |
| !! | ACAAATATAATCAATAGATG+TGG | + | chr4_3:9254461-9254480 | Msa0628590:intron | 20.0% |
| !! | ATTGTAATAAAAGAGGAAAT+AGG | - | chr4_3:9254628-9254647 | None:intergenic | 20.0% |
| !! | TTCAAATTTGACATTTACAT+TGG | - | chr4_3:9254748-9254767 | None:intergenic | 20.0% |
| !! | CATTGAAAAATATTACAACA+CGG | - | chr4_3:9254911-9254930 | None:intergenic | 20.0% |
| !! | TTTGAGATTATGAGAGAAAA+AGG | - | chr4_3:9251563-9251582 | None:intergenic | 25.0% |
| ! | TGTTTATGTTTATGAGGAAA+GGG | - | chr4_3:9251650-9251669 | None:intergenic | 25.0% |
| ! | ATGTTTATGTTTATGAGGAA+AGG | - | chr4_3:9251651-9251670 | None:intergenic | 25.0% |
| ! | ATAAAGAAGAATGAAGAACT+CGG | - | chr4_3:9251698-9251717 | None:intergenic | 25.0% |
| !!! | AACACCAGATTTGATTTTTA+AGG | + | chr4_3:9251764-9251783 | Msa0628590:five_prime_UTR | 25.0% |
| !!! | ACACCAGATTTGATTTTTAA+GGG | + | chr4_3:9251765-9251784 | Msa0628590:five_prime_UTR | 25.0% |
| ! | TTACCCTTAAAAATCAAATC+TGG | - | chr4_3:9251771-9251790 | None:intergenic | 25.0% |
| ! | GCTAAAGATTGAAAAAATAG+AGG | - | chr4_3:9251913-9251932 | None:intergenic | 25.0% |
| ! | TCATCATTTGTAGAAATTTG+AGG | + | chr4_3:9252284-9252303 | Msa0628590:intron | 25.0% |
| ! | CACATTTAATGTTAGAACAA+AGG | - | chr4_3:9252332-9252351 | None:intergenic | 25.0% |
| ! | AACAATGAAGCAACTAAAAA+AGG | + | chr4_3:9252366-9252385 | Msa0628590:intron | 25.0% |
| ! | TAAAAAAGGATTATAGCTAG+AGG | + | chr4_3:9252380-9252399 | Msa0628590:intron | 25.0% |
| !!! | TTTTGGAATAAGTTCATACA+AGG | + | chr4_3:9252592-9252611 | Msa0628590:intron | 25.0% |
| ! | AATTTGCAAACATTAATTGG+TGG | - | chr4_3:9252726-9252745 | None:intergenic | 25.0% |
| ! | AGTTGTTTAATCTGAATGTT+GGG | + | chr4_3:9253088-9253107 | Msa0628590:intron | 25.0% |
| ! | TAGAGTGTATAAATTAAAGC+TGG | + | chr4_3:9253124-9253143 | Msa0628590:intron | 25.0% |
| ! | AACTAAACCAAAGTTATATG+GGG | - | chr4_3:9253205-9253224 | None:intergenic | 25.0% |
| !! | GTTTGTTTACGTAATTTTCA+AGG | - | chr4_3:9253360-9253379 | None:intergenic | 25.0% |
| ! | ATAAATGAGCAATCACAAAA+TGG | - | chr4_3:9253447-9253466 | None:intergenic | 25.0% |
| !! | TTTTTGCTTAAATTAGTGAC+CGG | - | chr4_3:9253482-9253501 | None:intergenic | 25.0% |
| !! | TTTTTATATTCCTCAAACAC+GGG | + | chr4_3:9253703-9253722 | Msa0628590:intron | 25.0% |
| ! | GGAGGTTATATGTATTTAAT+TGG | + | chr4_3:9253724-9253743 | Msa0628590:intron | 25.0% |
| ! | ATCAAATACCTATAGTTTGA+GGG | - | chr4_3:9253767-9253786 | None:intergenic | 25.0% |
| ! | AATCAAATACCTATAGTTTG+AGG | - | chr4_3:9253768-9253787 | None:intergenic | 25.0% |
| ! | TATGATATACACACACATAT+TGG | + | chr4_3:9253825-9253844 | Msa0628590:intron | 25.0% |
| ! | TTTATCTATCAATTGTGGTA+AGG | + | chr4_3:9253874-9253893 | Msa0628590:intron | 25.0% |
| !! | AATTGTGATAACGAAAAATG+AGG | + | chr4_3:9253961-9253980 | Msa0628590:intron | 25.0% |
| !!! | ATTCAATTTTAACCAAGAGA+GGG | - | chr4_3:9254076-9254095 | None:intergenic | 25.0% |
| ! | GATTTGTCAAGAAAAATAGT+TGG | + | chr4_3:9254114-9254133 | Msa0628590:intron | 25.0% |
| !!! | ACAATTTGTTCTAAGATGTT+TGG | + | chr4_3:9254150-9254169 | Msa0628590:intron | 25.0% |
| !! | ATAATTTGCATCTTTACTTG+AGG | + | chr4_3:9254517-9254536 | Msa0628590:intron | 25.0% |
| !!! | ATAGGTTGGTTTGTATATAT+TGG | - | chr4_3:9254610-9254629 | None:intergenic | 25.0% |
| ! | TAATAAAAGAGGAAATAGGT+TGG | - | chr4_3:9254624-9254643 | None:intergenic | 25.0% |
| !! | TCCTCTTTTATTACAATAAC+AGG | + | chr4_3:9254631-9254650 | Msa0628590:intron | 25.0% |
| !! | CCTCTTTTATTACAATAACA+GGG | + | chr4_3:9254632-9254651 | Msa0628590:intron | 25.0% |
| ! | AATTTGACATTTACATTGGA+GGG | - | chr4_3:9254744-9254763 | None:intergenic | 25.0% |
| ! | AAATTTGACATTTACATTGG+AGG | - | chr4_3:9254745-9254764 | None:intergenic | 25.0% |
| !!! | ACATTGAGTTGATCATAAAA+AGG | - | chr4_3:9254840-9254859 | None:intergenic | 25.0% |
| ! | TGCAATTGCTACAAATAATA+TGG | + | chr4_3:9254875-9254894 | Msa0628590:three_prime_UTR | 25.0% |
| ! | AATTGCTACAAATAATATGG+TGG | + | chr4_3:9254878-9254897 | Msa0628590:three_prime_UTR | 25.0% |
| GAGAAGAAGAAACAATGAAA+GGG | - | chr4_3:9251616-9251635 | None:intergenic | 30.0% | |
| GTTTATGTTTATGAGGAAAG+GGG | - | chr4_3:9251649-9251668 | None:intergenic | 30.0% | |
| ATTCCTGTCACAAAATAACT+TGG | - | chr4_3:9252247-9252266 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACAGGAATTCAA+TGG | + | chr4_3:9252251-9252270 | Msa0628590:intron | 30.0% |
| !! | TTACTTACTTAAGAGCATCA+AGG | - | chr4_3:9252509-9252528 | None:intergenic | 30.0% |
| TTTCATGATATAGCTGTTAG+AGG | + | chr4_3:9252744-9252763 | Msa0628590:intron | 30.0% | |
| !! | TTTGTTGTTGAAACTCACAT+AGG | - | chr4_3:9252808-9252827 | None:intergenic | 30.0% |
| ! | GAAACTTTTGATGCTAGAAA+AGG | - | chr4_3:9252918-9252937 | None:intergenic | 30.0% |
| GAGTTGTTTAATCTGAATGT+TGG | + | chr4_3:9253087-9253106 | Msa0628590:intron | 30.0% | |
| AAACAATTCAAGGATGTTGA+TGG | + | chr4_3:9253228-9253247 | Msa0628590:intron | 30.0% | |
| !!! | AAAGGAGTACCTTTTCATAA+AGG | - | chr4_3:9253295-9253314 | None:intergenic | 30.0% |
| CATTTATATTATACACCCTC+CGG | + | chr4_3:9253460-9253479 | Msa0628590:intron | 30.0% | |
| CTTTAAATCCCTCAAACTAT+AGG | + | chr4_3:9253756-9253775 | Msa0628590:intron | 30.0% | |
| TAACGAAAAATGAGGTTTGA+CGG | + | chr4_3:9253969-9253988 | Msa0628590:intron | 30.0% | |
| !! | CATTCAATTTTAACCAAGAG+AGG | - | chr4_3:9254077-9254096 | None:intergenic | 30.0% |
| TACACATCAAATTGTTGAAG+TGG | + | chr4_3:9254252-9254271 | Msa0628590:intron | 30.0% | |
| ! | TGAAATTCTTTGATAGCAAG+TGG | + | chr4_3:9254307-9254326 | Msa0628590:intron | 30.0% |
| TATTGGAAAGATTCTCTTGA+TGG | - | chr4_3:9254593-9254612 | None:intergenic | 30.0% | |
| CCCTGTTATTGTAATAAAAG+AGG | - | chr4_3:9254635-9254654 | None:intergenic | 30.0% | |
| TACCAAAAGTTCTCTATTCA+TGG | + | chr4_3:9254681-9254700 | Msa0628590:CDS | 30.0% | |
| !! | TTGAGTTGATCATAAAAAGG+AGG | - | chr4_3:9254837-9254856 | None:intergenic | 30.0% |
| AAGTAAACGAAGAGAGAAGA+GGG | - | chr4_3:9251586-9251605 | None:intergenic | 35.0% | |
| AAAGTAAACGAAGAGAGAAG+AGG | - | chr4_3:9251587-9251606 | None:intergenic | 35.0% | |
| GGAGAAGAAGAAACAATGAA+AGG | - | chr4_3:9251617-9251636 | None:intergenic | 35.0% | |
| !! | TCAAATCTGGTGTTGTAGAT+CGG | - | chr4_3:9251758-9251777 | None:intergenic | 35.0% |
| TTCAGATCAACGTTCTTCTA+TGG | + | chr4_3:9251953-9251972 | Msa0628590:intron | 35.0% | |
| CTTCTATGGATAGACAAATC+TGG | + | chr4_3:9251967-9251986 | Msa0628590:exon | 35.0% | |
| !!! | GGCTTTGTAATGGATTTTGT+TGG | - | chr4_3:9252141-9252160 | None:intergenic | 35.0% |
| !! | TAGCCAAGTTATTTTGTGAC+AGG | + | chr4_3:9252241-9252260 | Msa0628590:intron | 35.0% |
| !!! | TTTTTAGCTGGCATAAACCA+AGG | - | chr4_3:9252406-9252425 | None:intergenic | 35.0% |
| TGAATGGGCAAATTAACATG+TGG | + | chr4_3:9252479-9252498 | Msa0628590:intron | 35.0% | |
| ! | TTCTATGGGGCTTAAGTTTT+TGG | + | chr4_3:9252575-9252594 | Msa0628590:intron | 35.0% |
| CTCTAGATCCTAATTGAATG+AGG | + | chr4_3:9252883-9252902 | Msa0628590:intron | 35.0% | |
| !! | GACAAGAAACCATTGGTTTA+TGG | + | chr4_3:9253000-9253019 | Msa0628590:intron | 35.0% |
| !! | ACCATTGGTTTATGGCTTAA+TGG | + | chr4_3:9253008-9253027 | Msa0628590:intron | 35.0% |
| TCCATTAAGCCATAAACCAA+TGG | - | chr4_3:9253012-9253031 | None:intergenic | 35.0% | |
| CAAATAAGAGAGCAATGTCA+AGG | - | chr4_3:9253178-9253197 | None:intergenic | 35.0% | |
| ! | TGACATTGCTCTCTTATTTG+CGG | + | chr4_3:9253178-9253197 | Msa0628590:intron | 35.0% |
| ATGGATAATATGTGTGCTCT+AGG | + | chr4_3:9253256-9253275 | Msa0628590:intron | 35.0% | |
| ! | AAAACATCGCAGGTATTGTT+TGG | - | chr4_3:9253417-9253436 | None:intergenic | 35.0% |
| TTGCTTATATTAGTGATCGG+AGG | + | chr4_3:9253594-9253613 | Msa0628590:intron | 35.0% | |
| TGCTTATATTAGTGATCGGA+GGG | + | chr4_3:9253595-9253614 | Msa0628590:intron | 35.0% | |
| AACGAAAAATGAGGTTTGAC+GGG | + | chr4_3:9253970-9253989 | Msa0628590:intron | 35.0% | |
| ! | GCTGCTATTGTTGCTTATTA+AGG | + | chr4_3:9254002-9254021 | Msa0628590:intron | 35.0% |
| TTCCAATTCCAAATTCTTCC+TGG | - | chr4_3:9254031-9254050 | None:intergenic | 35.0% | |
| ATATCAATTTCTCCCTCTCT+TGG | + | chr4_3:9254061-9254080 | Msa0628590:intron | 35.0% | |
| TCAAACATCATAGTCAGCAT+AGG | + | chr4_3:9254204-9254223 | Msa0628590:intron | 35.0% | |
| CAAACATCATAGTCAGCATA+GGG | + | chr4_3:9254205-9254224 | Msa0628590:intron | 35.0% | |
| AAACATCATAGTCAGCATAG+GGG | + | chr4_3:9254206-9254225 | Msa0628590:intron | 35.0% | |
| AAATTGTTGAAGTGGACCTT+TGG | + | chr4_3:9254260-9254279 | Msa0628590:intron | 35.0% | |
| ACTATGTTTATCCTCACTGT+TGG | + | chr4_3:9254426-9254445 | Msa0628590:intron | 35.0% | |
| TTTCAACTTAACCAACAGTG+AGG | - | chr4_3:9254440-9254459 | None:intergenic | 35.0% | |
| ! | AACTTTTGGTATTCCACGAT+GGG | - | chr4_3:9254672-9254691 | None:intergenic | 35.0% |
| ! | TGCCATGAATAGAGAACTTT+TGG | - | chr4_3:9254686-9254705 | None:intergenic | 35.0% |
| AAGAATCTCGACCAATTATG+AGG | - | chr4_3:9254713-9254732 | None:intergenic | 35.0% | |
| TAGAGAAGACATGAATAAGC+TGG | - | chr4_3:9254783-9254802 | None:intergenic | 35.0% | |
| TTGCAGTTAGTGTGAGATAG+TGG | - | chr4_3:9251537-9251556 | None:intergenic | 40.0% | |
| !! | TGTAGATCGGTGTTGTACAA+TGG | - | chr4_3:9251745-9251764 | None:intergenic | 40.0% |
| GAGAGATAAGCTATAACCAG+TGG | - | chr4_3:9251890-9251909 | None:intergenic | 40.0% | |
| TGGATAGACAAATCTGGCTA+TGG | + | chr4_3:9251973-9251992 | Msa0628590:CDS | 40.0% | |
| GGATAGACAAATCTGGCTAT+GGG | + | chr4_3:9251974-9251993 | Msa0628590:CDS | 40.0% | |
| GCTATGGGAAAGAATGATGA+AGG | + | chr4_3:9251989-9252008 | Msa0628590:CDS | 40.0% | |
| ACAGAACAGGTATCAGAAGT+AGG | + | chr4_3:9252017-9252036 | Msa0628590:intron | 40.0% | |
| CAGCCTCAACATGTATGAAT+GGG | + | chr4_3:9252464-9252483 | Msa0628590:intron | 40.0% | |
| TTGCCCATTCATACATGTTG+AGG | - | chr4_3:9252470-9252489 | None:intergenic | 40.0% | |
| CTGAGAGAAATGAAGACAGT+GGG | - | chr4_3:9252682-9252701 | None:intergenic | 40.0% | |
| ACTGAGAGAAATGAAGACAG+TGG | - | chr4_3:9252683-9252702 | None:intergenic | 40.0% | |
| GATCCTAATTGAATGAGGTC+AGG | + | chr4_3:9252888-9252907 | Msa0628590:intron | 40.0% | |
| TGACCTGACCTCATTCAATT+AGG | - | chr4_3:9252894-9252913 | None:intergenic | 40.0% | |
| CAATGGTTTCTTGTCATGCT+TGG | - | chr4_3:9252995-9253014 | None:intergenic | 40.0% | |
| CAAGCATGACAAGAAACCAT+TGG | + | chr4_3:9252993-9253012 | Msa0628590:intron | 40.0% | |
| !! | CTAGCATCAAAAGTGTCATG+TGG | + | chr4_3:9253049-9253068 | Msa0628590:intron | 40.0% |
| ! | GACATTGCTCTCTTATTTGC+GGG | + | chr4_3:9253179-9253198 | Msa0628590:intron | 40.0% |
| !! | AAGGATGTTGATGGTACAGA+TGG | + | chr4_3:9253237-9253256 | Msa0628590:intron | 40.0% |
| TCCACGGTACCTTTATGAAA+AGG | + | chr4_3:9253283-9253302 | Msa0628590:intron | 40.0% | |
| !!! | ACCTTTTCATAAAGGTACCG+TGG | - | chr4_3:9253287-9253306 | None:intergenic | 40.0% |
| TGGAAATGAGAAAACATCGC+AGG | - | chr4_3:9253427-9253446 | None:intergenic | 40.0% | |
| TGCTTAAATTAGTGACCGGA+GGG | - | chr4_3:9253478-9253497 | None:intergenic | 40.0% | |
| TTGCTTAAATTAGTGACCGG+AGG | - | chr4_3:9253479-9253498 | None:intergenic | 40.0% | |
| TTATATTCCTCAAACACGGG+AGG | + | chr4_3:9253706-9253725 | Msa0628590:intron | 40.0% | |
| ! | TGCCAGGAAGAATTTGGAAT+TGG | + | chr4_3:9254026-9254045 | Msa0628590:intron | 40.0% |
| CTAAGATGTTTGGTATGTGC+AGG | + | chr4_3:9254160-9254179 | Msa0628590:intron | 40.0% | |
| AGCATAGGGGACTTAATATG+CGG | + | chr4_3:9254219-9254238 | Msa0628590:intron | 40.0% | |
| ! | GAACTTTTGGTATTCCACGA+TGG | - | chr4_3:9254673-9254692 | None:intergenic | 40.0% |
| CATGGCAAAGACCTCATAAT+TGG | + | chr4_3:9254699-9254718 | Msa0628590:exon | 40.0% | |
| TGAGGAAAGGGGTTTGAAGA+AGG | - | chr4_3:9251638-9251657 | None:intergenic | 45.0% | |
| CTATAACCAGTGGAACACGA+TGG | - | chr4_3:9251880-9251899 | None:intergenic | 45.0% | |
| AACCACTCTCTTACTCTCTC+TGG | + | chr4_3:9252086-9252105 | Msa0628590:CDS | 45.0% | |
| AACCAGAGAGAGTAAGAGAG+TGG | - | chr4_3:9252091-9252110 | None:intergenic | 45.0% | |
| !! | TCTCTGGTTTGTTGTTGCTG+TGG | + | chr4_3:9252102-9252121 | Msa0628590:CDS | 45.0% |
| !! | GGTTTGTTGTTGCTGTGGTT+AGG | + | chr4_3:9252107-9252126 | Msa0628590:CDS | 45.0% |
| AGGATTATAGCTAGAGGCCT+TGG | + | chr4_3:9252386-9252405 | Msa0628590:intron | 45.0% | |
| GCAGCCTCAACATGTATGAA+TGG | + | chr4_3:9252463-9252482 | Msa0628590:intron | 45.0% | |
| !! | GTGTGCTCTAGGAATATCCA+CGG | + | chr4_3:9253267-9253286 | Msa0628590:intron | 45.0% |
| CATATAACCTCCCGTGTTTG+AGG | - | chr4_3:9253716-9253735 | None:intergenic | 45.0% | |
| ! | TGTTGCTTATTAAGGCTGCC+AGG | + | chr4_3:9254010-9254029 | Msa0628590:intron | 45.0% |
| TAAGGCTGCCAGGAAGAATT+TGG | + | chr4_3:9254020-9254039 | Msa0628590:intron | 45.0% | |
| GTTTGGTATGTGCAGGTATG+TGG | + | chr4_3:9254167-9254186 | Msa0628590:intron | 45.0% | |
| CTACATGCTAAGCTGTCCAA+AGG | - | chr4_3:9254279-9254298 | None:intergenic | 45.0% | |
| TGAGTCTGCAGGGATAAAGT+AGG | - | chr4_3:9254570-9254589 | None:intergenic | 45.0% | |
| !! | CCACGATGGGTTGAAATTTG+TGG | - | chr4_3:9254659-9254678 | None:intergenic | 45.0% |
| CCACAAATTTCAACCCATCG+TGG | + | chr4_3:9254656-9254675 | Msa0628590:CDS | 45.0% | |
| ! | GTTGGTTCCAATCGGAGAGA+GGG | - | chr4_3:9251848-9251867 | None:intergenic | 50.0% |
| ! | AGTTGGTTCCAATCGGAGAG+AGG | - | chr4_3:9251849-9251868 | None:intergenic | 50.0% |
| TAACCAGTGGAACACGATGG+TGG | - | chr4_3:9251877-9251896 | None:intergenic | 50.0% | |
| GATGAAGGAACGCACAGAAC+AGG | + | chr4_3:9252004-9252023 | Msa0628590:CDS | 50.0% | |
| TTGCGGGCCCCATATAACTT+TGG | + | chr4_3:9253195-9253214 | Msa0628590:intron | 50.0% | |
| !! | CTCTTGATGGTGAGTCTGCA+GGG | - | chr4_3:9254580-9254599 | None:intergenic | 50.0% |
| !! | TCTCTTGATGGTGAGTCTGC+AGG | - | chr4_3:9254581-9254600 | None:intergenic | 50.0% |
| TATCCCTCCCTCTCTCCGAT+TGG | + | chr4_3:9251838-9251857 | Msa0628590:intron | 55.0% | |
| GTTCCAATCGGAGAGAGGGA+GGG | - | chr4_3:9251844-9251863 | None:intergenic | 55.0% | |
| CAGGTATGTGGCATGTGCGT+TGG | + | chr4_3:9254179-9254198 | Msa0628590:intron | 55.0% | |
| GGTTCCAATCGGAGAGAGGG+AGG | - | chr4_3:9251845-9251864 | None:intergenic | 60.0% | |
| !! | GGCGGCGAGTTGGTTCCAAT+CGG | - | chr4_3:9251856-9251875 | None:intergenic | 60.0% |
| ! | CCAGTGGAACACGATGGTGG+CGG | - | chr4_3:9251874-9251893 | None:intergenic | 60.0% |
| !! | ACACGATGGTGGCGGCGAGT+TGG | - | chr4_3:9251866-9251885 | None:intergenic | 65.0% |
| CCGCCACCATCGTGTTCCAC+TGG | + | chr4_3:9251871-9251890 | Msa0628590:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9251534 | 9254963 | 9251534 | ID=Msa0628590;Name=Msa0628590 |
| chr4_3 | mRNA | 9251534 | 9254963 | 9251534 | ID=Msa0628590-mRNA-1;Parent=Msa0628590;Name=Msa0628590-mRNA-1;_AED=0.35;_eAED=0.35;_QI=247|0.5|0.8|1|0|0|5|246|70 |
| chr4_3 | exon | 9251534 | 9251603 | 9251534 | ID=Msa0628590-mRNA-1:exon:2768;Parent=Msa0628590-mRNA-1 |
| chr4_3 | exon | 9251624 | 9251786 | 9251624 | ID=Msa0628590-mRNA-1:exon:2769;Parent=Msa0628590-mRNA-1 |
| chr4_3 | exon | 9251958 | 9252025 | 9251958 | ID=Msa0628590-mRNA-1:exon:2770;Parent=Msa0628590-mRNA-1 |
| chr4_3 | exon | 9252079 | 9252172 | 9252079 | ID=Msa0628590-mRNA-1:exon:2771;Parent=Msa0628590-mRNA-1 |
| chr4_3 | exon | 9254653 | 9254963 | 9254653 | ID=Msa0628590-mRNA-1:exon:2772;Parent=Msa0628590-mRNA-1 |
| chr4_3 | five_prime_UTR | 9251534 | 9251603 | 9251534 | ID=Msa0628590-mRNA-1:five_prime_utr;Parent=Msa0628590-mRNA-1 |
| chr4_3 | five_prime_UTR | 9251624 | 9251786 | 9251624 | ID=Msa0628590-mRNA-1:five_prime_utr;Parent=Msa0628590-mRNA-1 |
| chr4_3 | five_prime_UTR | 9251958 | 9251971 | 9251958 | ID=Msa0628590-mRNA-1:five_prime_utr;Parent=Msa0628590-mRNA-1 |
| chr4_3 | CDS | 9251972 | 9252025 | 9251972 | ID=Msa0628590-mRNA-1:cds;Parent=Msa0628590-mRNA-1 |
| chr4_3 | CDS | 9252079 | 9252172 | 9252079 | ID=Msa0628590-mRNA-1:cds;Parent=Msa0628590-mRNA-1 |
| chr4_3 | CDS | 9254653 | 9254717 | 9254653 | ID=Msa0628590-mRNA-1:cds;Parent=Msa0628590-mRNA-1 |
| chr4_3 | three_prime_UTR | 9254718 | 9254963 | 9254718 | ID=Msa0628590-mRNA-1:three_prime_utr;Parent=Msa0628590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
